Citrus Sinensis ID: 043370
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | 2.2.26 [Sep-21-2011] | |||||||
| Q8S9M4 | 650 | Pentatricopeptide repeat- | yes | no | 0.986 | 0.652 | 0.616 | 1e-158 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 1.0 | 0.722 | 0.404 | 3e-98 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.988 | 0.594 | 0.398 | 3e-98 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.997 | 0.494 | 0.388 | 3e-97 | |
| P93011 | 583 | Pentatricopeptide repeat- | no | no | 1.0 | 0.737 | 0.393 | 2e-96 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.997 | 0.521 | 0.403 | 2e-96 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.965 | 0.531 | 0.400 | 2e-96 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.995 | 0.402 | 0.401 | 3e-96 | |
| Q9M4P3 | 656 | Pentatricopeptide repeat- | no | no | 0.988 | 0.647 | 0.425 | 3e-95 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.997 | 0.677 | 0.396 | 8e-95 |
| >sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 278/451 (61%), Positives = 341/451 (75%), Gaps = 27/451 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G ELDLV SSLAHMYM++G L +GE VIR MP+RN++AW TLI G AQNG E VL Y
Sbjct: 206 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 265
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M++ G RP+KITFV+V+SSCS+LA GQGQQIHAE +K GAS V V+SSLISMYS+C
Sbjct: 266 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 325
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM-EQKEFEANDVTFVSL 179
GCL D+ K F E E D V+WSSMI+AYGFHG+G+EAI LF M EQ E N+V F++L
Sbjct: 326 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 385
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSH GLK+KG+E FD+MV+KY KP L+HYTCVVDLLGR G LD+A A+IR+MP+K
Sbjct: 386 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 445
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
+ +IWKTLLSAC HK+ +MA R+ +EIL ++P D+A YVLL+N+HASAKRW+ VSE R+
Sbjct: 446 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 505
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
+MR++NVKKE G+SW E K +VHQF MGD+S +S EI YL+ELT EMKL+GY PDT +
Sbjct: 506 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 565
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP--------------------FKY 399
+HDMD EEKE +L HSEKLA+AFA +++LP FKY
Sbjct: 566 VLHDMDEEEKESDLVQHSEKLAVAFA------LMILPEGAPIRIIKNLRVCSDCHVAFKY 619
Query: 400 ISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
IS IKNREI +RD SRFHHF NGKCSCGDYW
Sbjct: 620 ISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 359 bits (921), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 180/445 (40%), Positives = 274/445 (61%), Gaps = 15/445 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF + +SL H+Y G + KV MP ++++AW ++I G A+NG E+ L Y
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALY 210
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G +PD T VS++S+C+++ L G+++H ++K G + ++ + L+ +Y+RC
Sbjct: 211 TEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC 270
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSL 179
G ++++ F E + V W+S+I +G G+EAI LF+ ME E ++TFV +
Sbjct: 271 GRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGI 330
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSHCG+ ++G E+F M ++Y+ +PR+EH+ C+VDLL R G + +A I++MP++
Sbjct: 331 LYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQP 390
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
N +IW+TLL AC H +D+A +IL + P + YVLLSN++AS +RW V + R+
Sbjct: 391 NVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRK 450
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
M VKK PG S +E+ N+VH+F MGDKSHP+S I L+E+T ++ GYVP
Sbjct: 451 QMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISN 510
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAF---AEHTRGLIVM-----------LPFKYISEIKN 405
D++ EEKE + +HSEK+AIAF + R I + L K +S++ N
Sbjct: 511 VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYN 570
Query: 406 REIIVRDASRFHHFRNGKCSCGDYW 430
REI+VRD SRFHHF+NG CSC DYW
Sbjct: 571 REIVVRDRSRFHHFKNGSCSCQDYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (920), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 179/449 (39%), Positives = 267/449 (59%), Gaps = 24/449 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + D+ GSSL MY KS + + E+V + R+ I+W +L+AG QNG + L +
Sbjct: 272 GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLF 331
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M +P + F SVI +C+ LATL G+Q+H V++ G ++ + S+L+ MYS+C
Sbjct: 332 RQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKC 391
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + + K F D V W+++I + HG G EA++LFE+M+++ + N V FV++L
Sbjct: 392 GNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVL 451
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL ++ +F+ M K Y LEHY V DLLGR G L+EA I M V+
Sbjct: 452 TACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPT 511
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+W TLLS+C HK+ ++A ++AE+I V+ ++ YVL+ N++AS RW+ +++ R
Sbjct: 512 GSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLR 571
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MR++ ++K+P SW+E+KN+ H F GD+SHP +I+ +L+ + +M+ GYV DT
Sbjct: 572 MRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGV 631
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYIS 401
+HD+D E K L HSE+LA+AF G+I P K+IS
Sbjct: 632 LHDVDEEHKRELLFGHSERLAVAF-----GIINTEPGTTIRVTKNIRICTDCHVAIKFIS 686
Query: 402 EIKNREIIVRDASRFHHFRNGKCSCGDYW 430
+I REIIVRD SRFHHF G CSCGDYW
Sbjct: 687 KITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 283/445 (63%), Gaps = 16/445 (3%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
+E G++L Y+K G + E KV + ++++AW ++AG AQ G E + +
Sbjct: 424 YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG 483
Query: 62 LMRMVGFRPDKITFVSVISSCSEL-ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ G +P++ TF S+++ C+ A++GQG+Q H +K+ + V S+L++MY++
Sbjct: 484 ELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 543
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++ + + F D+V W+SMI+ Y HG+ +A+++F++M++++ + + VTF+ +
Sbjct: 544 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 603
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
AC+H GL E+G ++FD+MV+ + P EH +C+VDL R G L++A +I NMP A
Sbjct: 604 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 663
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+ IW+T+L+AC+ HK T++ AE+I+ + P+D+A YVLLSN++A + WQ ++ R+
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M ERNVKKEPG SW+E+KN+ + F GD+SHP +I + LE+L++ +K GY PDT
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 783
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA-----EHTRGLIVM---------LPFKYISEIKNR 406
+ D+D E KE L HSE+LAIAF + + LI+ L K I++I+ R
Sbjct: 784 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 843
Query: 407 EIIVRDASRFHHF-RNGKCSCGDYW 430
EI+VRD++RFHHF +G CSCGD+W
Sbjct: 844 EIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/447 (39%), Positives = 272/447 (60%), Gaps = 17/447 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF LD ++L Y K G + +V MP ++++AW +L++G QNGLA++ + +
Sbjct: 137 GFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVF 196
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
MR GF PD TFVS++S+C++ + G +H ++ G L+V + ++LI++YSRC
Sbjct: 197 YQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRC 256
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE-ANDVTFVSL 179
G + + + F + + ++V W++MI+AYG HG G++A+ LF +ME N+VTFV++
Sbjct: 257 GDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAV 316
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
L AC+H GL E+G + M K YR P +EH+ C+VD+LGR G+LDEA I +
Sbjct: 317 LSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATG 376
Query: 240 NAI---IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296
A +W +L ACK H++ D+ IA+ ++ + P + +V+LSNI+A + + VS
Sbjct: 377 KATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSH 436
Query: 297 FREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPD 356
R+ M N++K+ G S +E++N+ + F+MGD+SH + EI YLE L S K GY P
Sbjct: 437 IRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPV 496
Query: 357 TGADMHDMDSEEKEYNLKHHSEKLAIAFA-EHTRGLIVML------------PFKYISEI 403
+ MH ++ EEKE+ L++HSEKLA+AF T + + + FKYIS +
Sbjct: 497 SEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDVAITIVKNLRICEDCHSAFKYISIV 556
Query: 404 KNREIIVRDASRFHHFRNGKCSCGDYW 430
NR+I VRD RFHHF+NG CSC DYW
Sbjct: 557 SNRQITVRDKLRFHHFQNGSCSCLDYW 583
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/444 (40%), Positives = 274/444 (61%), Gaps = 15/444 (3%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
F D+ G+++ MY K G + V +P +VI+W T+I+G AQNG A + ++ YN
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439
Query: 62 LMRMVG-FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M G ++ T+VSV+ +CS+ L QG ++H ++K G LDV V++SL MY +C
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKC 499
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G L+D++ F + + V W+++IA +GFHG GE+A+ LF++M + + + +TFV+LL
Sbjct: 500 GRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL 559
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL ++G F++M Y P L+HY C+VD+ GR G L+ A I++M ++ +
Sbjct: 560 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 619
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A IW LLSAC+ H + D+ +E + V P+ +VLLSN++ASA +W+GV E R
Sbjct: 620 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSI 679
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
+ ++K PG S +E+ N+V F G+++HP E+ L L +++K+ GYVPD
Sbjct: 680 AHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFV 739
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAE-HTRGLIVMLPF-------------KYISEIKNR 406
+ D++ +EKE+ L HSE+LAIAFA T + F K+IS+I R
Sbjct: 740 LQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITER 799
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRD++RFHHF+NG CSCGDYW
Sbjct: 800 EIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/429 (40%), Positives = 267/429 (62%), Gaps = 14/429 (3%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75
Y + G + E + + MP R+ ++W +IAG +Q+G + + L + M G R ++ +F
Sbjct: 353 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 412
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135
S +S+C+++ L G+Q+H +VK G V ++L+ MY +CG ++++ F E
Sbjct: 413 SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 472
Query: 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195
D+V W++MIA Y HG GE A+ FE M+++ + +D T V++L ACSH GL +KG ++
Sbjct: 473 KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQY 532
Query: 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255
F M + Y P +HY C+VDLLGR G L++A L++NMP + +A IW TLL A + H
Sbjct: 533 FYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 592
Query: 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWL 315
+T++A A++I + P+++ YVLLSN++AS+ RW V + R MR++ VKK PG SW+
Sbjct: 593 NTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Query: 316 EIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKH 375
EI+N+ H F++GD+ HP EI +LEEL MK GYV T +HD++ EEKE +++
Sbjct: 653 EIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRY 712
Query: 376 HSEKLAIAFA----EHTRGLIVML----------PFKYISEIKNREIIVRDASRFHHFRN 421
HSE+LA+A+ R + V+ KY++ I R II+RD +RFHHF++
Sbjct: 713 HSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKD 772
Query: 422 GKCSCGDYW 430
G CSCGDYW
Sbjct: 773 GSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 179/446 (40%), Positives = 262/446 (58%), Gaps = 18/446 (4%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF DL ++L +Y + G + E + IAW L++G Q+G E+ L +
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G + TF S + + SE A + QG+Q+HA + K G + V ++LISMY++C
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + D+ K FLE + V W+++I AY HG G EA++ F+QM N VT V +L
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL +KG+ +F+ M +Y P+ EHY CVVD+L R G L A I+ MP+K +
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD 860
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A++W+TLLSAC HK+ ++ A +L + P+D+A YVLLSN++A +K+W R+
Sbjct: 861 ALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQK 920
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E+ VKKEPG SW+E+KN +H F +GD++HP + EI Y ++LT GYV D +
Sbjct: 921 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSL 980
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP----------------FKYISEIK 404
++++ E+K+ + HSEKLAI+F L +P K++S++
Sbjct: 981 LNELQHEQKDPIIFIHSEKLAISFG--LLSLPATVPINVMKNLRVCNDCHAWIKFVSKVS 1038
Query: 405 NREIIVRDASRFHHFRNGKCSCGDYW 430
NREIIVRDA RFHHF G CSC DYW
Sbjct: 1039 NREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 349 bits (895), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 187/440 (42%), Positives = 276/440 (62%), Gaps = 15/440 (3%)
Query: 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPI-RNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
+VA +++ YMK+ + E + + M + +N++ W +I+G +N ED L + M
Sbjct: 217 VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAML 276
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
G RP+ S + CSEL+ L G+QIH V K+ DV ++SLISMY +CG L
Sbjct: 277 EEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELG 336
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
D+ K F + DVV W++MI+ Y HG ++A+ LF +M + + +TFV++L AC+
Sbjct: 337 DAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACN 396
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
H GL GM +F+ MV+ Y+ +P+ +HYTC+VDLLGR G L+EA LIR+MP + +A ++
Sbjct: 397 HAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVF 456
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
TLL AC+ HK+ ++A AE++L +N Q+AA YV L+NI+AS RW+ V+ R+ M+E
Sbjct: 457 GTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKES 516
Query: 305 NVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDM 364
NV K PG SW+EI+N+VH F D+ HP I L+EL +MKL GY P+ +H++
Sbjct: 517 NVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNV 576
Query: 365 DSEEKEYNLKHHSEKLAIAFA--EHTRGLIVML------------PFKYISEIKNREIIV 410
+ E+KE L HSEKLA+AF + +G + + K+ISEI+ REIIV
Sbjct: 577 EEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIV 636
Query: 411 RDASRFHHFRNGKCSCGDYW 430
RD +RFHHF++G CSCGDYW
Sbjct: 637 RDTTRFHHFKDGSCSCGDYW 656
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 176/444 (39%), Positives = 265/444 (59%), Gaps = 15/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF+ ++ GS+L +Y + G + + + V + RN ++W LIAG A+ E L+ +
Sbjct: 191 GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF 250
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M GFRP ++ S+ +CS L QG+ +HA ++K+G L ++L+ MY++
Sbjct: 251 QGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS 310
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + D+ K F DVV W+S++ AY HG G+EA+ FE+M + N+++F+S+L
Sbjct: 311 GSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVL 370
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL ++G +++LM KK P HY VVDLLGR G L+ A I MP++
Sbjct: 371 TACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPT 429
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A IWK LL+AC+ HK+T++ AE + ++P D P+V+L NI+AS RW + R+
Sbjct: 430 AAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKK 489
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E VKKEP SW+EI+N +H F D+ HP+ EI EE+ +++K GYVPDT
Sbjct: 490 MKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHV 549
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAE---------HTRGLIVM-----LPFKYISEIKNR 406
+ +D +E+E NL++HSEK+A+AFA H + I + K S++ R
Sbjct: 550 IVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGR 609
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRD +RFHHF++G CSC DYW
Sbjct: 610 EIIVRDTNRFHHFKDGNCSCKDYW 633
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 225446691 | 657 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.654 | 0.725 | 0.0 | |
| 449438512 | 667 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.644 | 0.689 | 0.0 | |
| 224138422 | 562 | predicted protein [Populus trichocarpa] | 0.988 | 0.756 | 0.699 | 1e-180 | |
| 356528130 | 674 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.637 | 0.668 | 1e-169 | |
| 218546768 | 650 | RecName: Full=Pentatricopeptide repeat-c | 0.986 | 0.652 | 0.616 | 1e-156 | |
| 30688521 | 565 | pentatricopeptide repeat-containing prot | 0.986 | 0.750 | 0.616 | 1e-156 | |
| 3402709 | 563 | hypothetical protein [Arabidopsis thalia | 0.986 | 0.753 | 0.616 | 1e-156 | |
| 297824049 | 565 | pentatricopeptide repeat-containing prot | 0.986 | 0.750 | 0.611 | 1e-155 | |
| 357125908 | 647 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.664 | 0.549 | 1e-141 | |
| 115456187 | 708 | Os03g0816600 [Oryza sativa Japonica Grou | 1.0 | 0.607 | 0.547 | 1e-140 |
| >gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/444 (72%), Positives = 371/444 (83%), Gaps = 14/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GFE +LV SSLAHMYMK GSL EGE++IR MP +NV+AW TLIAG+AQNG E+VLDQY
Sbjct: 214 GFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQY 273
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
N+M+M GFRPDKITFVSVISSCSELATLGQGQQIHAEV+KAGASL V VISSLISMYSRC
Sbjct: 274 NMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRC 333
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
GCL+ S+K FLECE DVV WSSMIAAYGFHG+G EAI+LF QMEQ++ EANDVTF+SLL
Sbjct: 334 GCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLL 393
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
YACSHCGLKEKG++FFDLMV+KY KPRLEHYTC+VDLLGR G ++EA ALIR+MPVKA+
Sbjct: 394 YACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKAD 453
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
I WKTLLSACK HK T+MA RI+EE+ ++P+D PYVLLSNIHAS KRW VS+ R+A
Sbjct: 454 VITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKA 513
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MR+R +KKEPG+SWLE+KNQ+HQF MGDKSHP+S+EI YL ELTSEMK RGYVPD +
Sbjct: 514 MRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSV 573
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA----------EHTRGLIVM----LPFKYISEIKNR 406
+HDMD E+KEY+L HHSEKLAIAFA + L V + KYISEI NR
Sbjct: 574 LHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNR 633
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRD+SRFHHF+NG+CSCGDYW
Sbjct: 634 EIIVRDSSRFHHFKNGRCSCGDYW 657
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like [Cucumis sativus] gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/444 (68%), Positives = 365/444 (82%), Gaps = 14/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GFEL V GSSLAHMY+KSGSL +GEK+I+ MPIR V+AW TLIAGKAQNG E+VL+QY
Sbjct: 224 GFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQY 283
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
N+M+M GFRPDKITFVSV+S+CSELATLGQGQQIHAEV+KAGAS + V+SSLISMYSR
Sbjct: 284 NMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRS 343
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
GCL+DS+K F++ E DVVLWSSMIAAYGFHG+GEEA+ LF QME + EAN+VTF+SLL
Sbjct: 344 GCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLL 403
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
YACSH GLKEKG E+FDLMVKKY+ KPR+EHYTCVVDLLGR G L+EA +IR+MPV+ +
Sbjct: 404 YACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPD 463
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
IIWKTLL+ACK HK +MA RI+EEI+ ++P DAA YVLLSNIHASA+ W VS+ R+A
Sbjct: 464 GIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKA 523
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MR+R+V+KEPG+SWLE+KN VHQF+MGDKSHP+ EIDLYL+EL SE+K GYVP+ G+
Sbjct: 524 MRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSV 583
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVML--------------PFKYISEIKNR 406
+HDMD+EEKEYNL HHSEK AIAFA V + K IS I+NR
Sbjct: 584 LHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNR 643
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRDASRFHHF++G+CSCG+YW
Sbjct: 644 EIIVRDASRFHHFKDGECSCGNYW 667
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa] gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/449 (69%), Positives = 360/449 (80%), Gaps = 24/449 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G+E +LV GSSLAHMYMKSGSL EGEKVI+ M IRNV+AW TLIAG AQNG E VLD Y
Sbjct: 119 GYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLY 178
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
N+M+M G RPDKIT VSVISS +ELATL QGQQIHAE +KAGA+ V V+SSLISMYS+C
Sbjct: 179 NMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKC 238
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
GCL+DS+K L+CE+ D VLWSSMIAAYGFHG+GEEA++LFEQMEQ+ NDVTF+SLL
Sbjct: 239 GCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLL 298
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
YACSH GLKEKGM FF LMV+KY KPRLEHYTCVVDLLGR G LDEA A+IR+MP++A+
Sbjct: 299 YACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEAD 358
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+IWKTLLSAC+ H++ DMA R AEEIL +NPQD+A YVLLSNIHASAKRW+ VS+ R
Sbjct: 359 VVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTT 418
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MR+RNVKKEPGVSWLE+KN+V QF+MGDKSHP S EIDLYL+EL EMKLRGYVPDT
Sbjct: 419 MRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATV 478
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYIS 401
HD DSEEKE +L +HSEKLAIAF GL+ + P K IS
Sbjct: 479 FHDTDSEEKENSLVNHSEKLAIAF-----GLMNIPPGSPIRVMKNLRICSDCHVAIKLIS 533
Query: 402 EIKNREIIVRDASRFHHFRNGKCSCGDYW 430
+I NREIIVRD SRFHHF++GKCSCGDYW
Sbjct: 534 DINNREIIVRDTSRFHHFKHGKCSCGDYW 562
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/444 (66%), Positives = 363/444 (81%), Gaps = 14/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GFE +LV G SLAHMYMK+GS+ +GE+VI MP +++AW TL++GKAQ G E VLDQY
Sbjct: 231 GFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQY 290
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M+M GFRPDKITFVSVISSCSELA L QG+QIHAE VKAGAS +V V+SSL+SMYSRC
Sbjct: 291 CMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRC 350
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
GCL DS+KTFLEC+ DVVLWSSMIAAYGFHG+GEEAI LF +MEQ+ N++TF+SLL
Sbjct: 351 GCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLL 410
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
YACSHCGLK+KG+ FD+MVKKY K RL+HYTC+VDLLGR G L+EA A+IR+MPVKA+
Sbjct: 411 YACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKAD 470
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
AIIWKTLLSACK HK+ ++A R+A+E+L ++PQD+A YVLL+NI++SA RWQ VSE R A
Sbjct: 471 AIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRA 530
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+++ VKKEPG+SW+E+KNQVHQF MGD+ HP+ +EI+ YLEELTSE+K +GYVPDT +
Sbjct: 531 MKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSV 590
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVM------------LPFKYISEIKNR 406
+HDMD+EEKE L+HHSEKLAIAFA G+ + + KYISEIK
Sbjct: 591 LHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKL 650
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRD+SRFHHF+NG CSCGDYW
Sbjct: 651 EIIVRDSSRFHHFKNGTCSCGDYW 674
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080 | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/451 (61%), Positives = 341/451 (75%), Gaps = 27/451 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G ELDLV SSLAHMYM++G L +GE VIR MP+RN++AW TLI G AQNG E VL Y
Sbjct: 206 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 265
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M++ G RP+KITFV+V+SSCS+LA GQGQQIHAE +K GAS V V+SSLISMYS+C
Sbjct: 266 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 325
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM-EQKEFEANDVTFVSL 179
GCL D+ K F E E D V+WSSMI+AYGFHG+G+EAI LF M EQ E N+V F++L
Sbjct: 326 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 385
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSH GLK+KG+E FD+MV+KY KP L+HYTCVVDLLGR G LD+A A+IR+MP+K
Sbjct: 386 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 445
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
+ +IWKTLLSAC HK+ +MA R+ +EIL ++P D+A YVLL+N+HASAKRW+ VSE R+
Sbjct: 446 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 505
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
+MR++NVKKE G+SW E K +VHQF MGD+S +S EI YL+ELT EMKL+GY PDT +
Sbjct: 506 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 565
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP--------------------FKY 399
+HDMD EEKE +L HSEKLA+AFA +++LP FKY
Sbjct: 566 VLHDMDEEEKESDLVQHSEKLAVAFA------LMILPEGAPIRIIKNLRVCSDCHVAFKY 619
Query: 400 ISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
IS IKNREI +RD SRFHHF NGKCSCGDYW
Sbjct: 620 ISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana] gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/451 (61%), Positives = 341/451 (75%), Gaps = 27/451 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G ELDLV SSLAHMYM++G L +GE VIR MP+RN++AW TLI G AQNG E VL Y
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M++ G RP+KITFV+V+SSCS+LA GQGQQIHAE +K GAS V V+SSLISMYS+C
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 240
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM-EQKEFEANDVTFVSL 179
GCL D+ K F E E D V+WSSMI+AYGFHG+G+EAI LF M EQ E N+V F++L
Sbjct: 241 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 300
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSH GLK+KG+E FD+MV+KY KP L+HYTCVVDLLGR G LD+A A+IR+MP+K
Sbjct: 301 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 360
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
+ +IWKTLLSAC HK+ +MA R+ +EIL ++P D+A YVLL+N+HASAKRW+ VSE R+
Sbjct: 361 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 420
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
+MR++NVKKE G+SW E K +VHQF MGD+S +S EI YL+ELT EMKL+GY PDT +
Sbjct: 421 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 480
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP--------------------FKY 399
+HDMD EEKE +L HSEKLA+AFA +++LP FKY
Sbjct: 481 VLHDMDEEEKESDLVQHSEKLAVAFA------LMILPEGAPIRIIKNLRVCSDCHVAFKY 534
Query: 400 ISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
IS IKNREI +RD SRFHHF NGKCSCGDYW
Sbjct: 535 ISVIKNREITLRDGSRFHHFINGKCSCGDYW 565
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/451 (61%), Positives = 341/451 (75%), Gaps = 27/451 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G ELDLV SSLAHMYM++G L +GE VIR MP+RN++AW TLI G AQNG E VL Y
Sbjct: 119 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 178
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M++ G RP+KITFV+V+SSCS+LA GQGQQIHAE +K GAS V V+SSLISMYS+C
Sbjct: 179 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 238
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM-EQKEFEANDVTFVSL 179
GCL D+ K F E E D V+WSSMI+AYGFHG+G+EAI LF M EQ E N+V F++L
Sbjct: 239 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 298
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSH GLK+KG+E FD+MV+KY KP L+HYTCVVDLLGR G LD+A A+IR+MP+K
Sbjct: 299 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 358
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
+ +IWKTLLSAC HK+ +MA R+ +EIL ++P D+A YVLL+N+HASAKRW+ VSE R+
Sbjct: 359 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 418
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
+MR++NVKKE G+SW E K +VHQF MGD+S +S EI YL+ELT EMKL+GY PDT +
Sbjct: 419 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 478
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP--------------------FKY 399
+HDMD EEKE +L HSEKLA+AFA +++LP FKY
Sbjct: 479 VLHDMDEEEKESDLVQHSEKLAVAFA------LMILPEGAPIRIIKNLRVCSDCHVAFKY 532
Query: 400 ISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
IS IKNREI +RD SRFHHF NGKCSCGDYW
Sbjct: 533 ISVIKNREITLRDGSRFHHFINGKCSCGDYW 563
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/451 (61%), Positives = 341/451 (75%), Gaps = 27/451 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G ELDLV SSLAHMYM++G L +GE VIR MP+RN++AW TLI G AQNG E VL Y
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M++ G RP+KITFV+V+SSCS+LA GQGQQIHAE +K GAS V V+SSLISMYS+C
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 240
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM-EQKEFEANDVTFVSL 179
GCL D+ K F E E D V+WSSMI+AYGFHG+G+EAI LF M EQ E E N+V F++L
Sbjct: 241 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNL 300
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSH GLK+KG+E FD+MV+KY KP L+HYTCVVDLLGR G LD+A A+I++MP+K
Sbjct: 301 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKP 360
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
+ +IWKTLLSAC HK+ +MA ++ +EIL ++P D+A YVLL+N+HASAKRW+ VSE R+
Sbjct: 361 DPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRK 420
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
+MR++NVKKE G+SW E K +VHQF MGD+S +S EI YL+ELT EMKL+GY PDT +
Sbjct: 421 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 480
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP--------------------FKY 399
+HDMD EEKE +L HSEKLA+AFA +++LP FKY
Sbjct: 481 VLHDMDEEEKESDLVQHSEKLAVAFA------LMILPEGAPIRIIKNLRVCSDCHVAFKY 534
Query: 400 ISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
IS I NREI +RD SRFHHF NGKCSCGDYW
Sbjct: 535 ISVIMNREITLRDGSRFHHFINGKCSCGDYW 565
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/444 (54%), Positives = 321/444 (72%), Gaps = 14/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + D+ G+SLAHMYM+ G L EGE V+R +P ++++ T IAG+ QNG +E L+ +
Sbjct: 204 GMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYF 263
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
++MR V PD +TFVS IS CS+LA L QGQQ+HA+V+KAG V VI+SL+ MYSRC
Sbjct: 264 SMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRC 323
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
GCL DS + + D+ L S+MI+A GFHG+G +A+ LF+QM E N+VTF++LL
Sbjct: 324 GCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALL 383
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
YACSH GLK++G+EFF+LM K Y +P ++HY C+VDLLGR G LDEA ALI +MPV+A+
Sbjct: 384 YACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRAD 443
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+IWKTLLSACKT K+ DMA RIAE ++ +P+D+APYVLLSNI A++KRW V+E R+
Sbjct: 444 GVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKI 503
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MRE++++KEPGVSW+E K QVHQF GDKSHPR EID YL+E+ +++ GY PD
Sbjct: 504 MREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMV 563
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVM------------LPFKYISEIKNR 406
HDM+ EEKE +L HHSEKLAIAFA G+ + + K IS++ R
Sbjct: 564 FHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGR 623
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EI+VRD SRFHHFR+G+CSCGDYW
Sbjct: 624 EIVVRDVSRFHHFRDGRCSCGDYW 647
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group] gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/444 (54%), Positives = 319/444 (71%), Gaps = 14/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + D+ GSSLAHMYM+ G L EGE V+R++P ++++ T+IAG+ QNG +E L+ +
Sbjct: 265 GLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYF 324
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+MR VG D +TFVS ISSCS+LA L QGQQIH +V+KAG V V++ L+ MYSRC
Sbjct: 325 CMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRC 384
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
GCL DS + F SD L S+MI+AYGFHG G++AI LF+QM E +DVTF++LL
Sbjct: 385 GCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALL 444
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
YACSH GLKE+GM+ F+LM K Y +P ++HYTCVVDLLGR G LDEA ALI +MP+ +
Sbjct: 445 YACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPD 504
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+IWKTLLSACKT K+ DMA RIA+ ++ ++P D+A YVLLSNI A+++RW VSE R+A
Sbjct: 505 GVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKA 564
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MR+ NV+KEPGVSW+E+K +HQF GD+SHPR EID LEE+ ++++ GY PD
Sbjct: 565 MRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMV 624
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVM------------LPFKYISEIKNR 406
+HDM+ EEKE +L HHSEKLAIAFA G+ + L K +S++ R
Sbjct: 625 LHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGR 684
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EI+VRD SRFHHF++G+CSC DYW
Sbjct: 685 EIVVRDVSRFHHFKDGRCSCRDYW 708
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 1.0 | 0.722 | 0.404 | 1.2e-90 | |
| TAIR|locus:2097365 | 721 | AT3G49710 "AT3G49710" [Arabido | 0.893 | 0.532 | 0.382 | 2.9e-90 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.997 | 0.494 | 0.391 | 3.1e-90 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 1.0 | 0.404 | 0.405 | 2.8e-89 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.988 | 0.516 | 0.409 | 7.5e-89 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.965 | 0.531 | 0.400 | 9.6e-89 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.995 | 0.679 | 0.380 | 2.9e-87 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.960 | 0.585 | 0.405 | 4.7e-87 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.890 | 0.450 | 0.363 | 1.3e-86 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.990 | 0.539 | 0.376 | 1.6e-86 |
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 180/445 (40%), Positives = 274/445 (61%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF + +SL H+Y G + KV MP ++++AW ++I G A+NG E+ L Y
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALY 210
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G +PD T VS++S+C+++ L G+++H ++K G + ++ + L+ +Y+RC
Sbjct: 211 TEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC 270
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSL 179
G ++++ F E + V W+S+I +G G+EAI LF+ ME E ++TFV +
Sbjct: 271 GRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGI 330
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSHCG+ ++G E+F M ++Y+ +PR+EH+ C+VDLL R G + +A I++MP++
Sbjct: 331 LYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQP 390
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
N +IW+TLL AC H +D+A +IL + P + YVLLSN++AS +RW V + R+
Sbjct: 391 NVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRK 450
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
M VKK PG S +E+ N+VH+F MGDKSHP+S I L+E+T ++ GYVP
Sbjct: 451 QMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISN 510
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFA-----EHTRGLIVM---------LPFKYISEIKN 405
D++ EEKE + +HSEK+AIAF E + +V L K +S++ N
Sbjct: 511 VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYN 570
Query: 406 REIIVRDASRFHHFRNGKCSCGDYW 430
REI+VRD SRFHHF+NG CSC DYW
Sbjct: 571 REIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2097365 AT3G49710 "AT3G49710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 2.9e-90, Sum P(3) = 2.9e-90
Identities = 150/392 (38%), Positives = 236/392 (60%)
Query: 1 GFELDLVAGSSLAHMYMKSGS---LVEGEKVIRLMPIRNVIAWITLIAGKAQNG-LAEDV 56
GF + GS L Y K G + + EKV + + +++ W T+I+G + N L+E+
Sbjct: 270 GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEA 329
Query: 57 LDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGA-SLDVGVISSLIS 115
+ + M+ +G RPD +FV V S+CS L++ Q +QIH +K+ S + V ++LIS
Sbjct: 330 VKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALIS 389
Query: 116 MYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVT 175
+Y + G L D+ F + V ++ MI Y HG G EA+ L+++M N +T
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKIT 449
Query: 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235
FV++L AC+HCG ++G E+F+ M + ++ +P EHY+C++DLLGR G L+EA I M
Sbjct: 450 FVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAM 509
Query: 236 PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295
P K ++ W LL AC+ HK+ +A R A E++ + P A PYV+L+N++A A++W+ ++
Sbjct: 510 PYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMA 569
Query: 296 EFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVP 355
R++MR + ++K+PG SW+E+K + H F D SHP E++ YLEE+ +MK GYV
Sbjct: 570 SVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVM 629
Query: 356 DTGADM--HDMDSE-EKEYNLKHHSEKLAIAF 384
D M D E ++E L HHSEKLA+AF
Sbjct: 630 DKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAF 661
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 174/445 (39%), Positives = 283/445 (63%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
+E G++L Y+K G + E KV + ++++AW ++AG AQ G E + +
Sbjct: 424 YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG 483
Query: 62 LMRMVGFRPDKITFVSVISSCSEL-ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ G +P++ TF S+++ C+ A++GQG+Q H +K+ + V S+L++MY++
Sbjct: 484 ELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 543
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++ + + F D+V W+SMI+ Y HG+ +A+++F++M++++ + + VTF+ +
Sbjct: 544 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 603
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
AC+H GL E+G ++FD+MV+ + P EH +C+VDL R G L++A +I NMP A
Sbjct: 604 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 663
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+ IW+T+L+AC+ HK T++ AE+I+ + P+D+A YVLLSN++A + WQ ++ R+
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M ERNVKKEPG SW+E+KN+ + F GD+SHP +I + LE+L++ +K GY PDT
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 783
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA--EHTRG---LIVM---------LPFKYISEIKNR 406
+ D+D E KE L HSE+LAIAF +G LI+ L K I++I+ R
Sbjct: 784 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 843
Query: 407 EIIVRDASRFHHFRN-GKCSCGDYW 430
EI+VRD++RFHHF + G CSCGD+W
Sbjct: 844 EIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 180/444 (40%), Positives = 263/444 (59%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF DL ++L +Y + G + E + IAW L++G Q+G E+ L +
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G + TF S + + SE A + QG+Q+HA + K G + V ++LISMY++C
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + D+ K FLE + V W+++I AY HG G EA++ F+QM N VT V +L
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL +KG+ +F+ M +Y P+ EHY CVVD+L R G L A I+ MP+K +
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD 860
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A++W+TLLSAC HK+ ++ A +L + P+D+A YVLLSN++A +K+W R+
Sbjct: 861 ALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQK 920
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E+ VKKEPG SW+E+KN +H F +GD++HP + EI Y ++LT GYV D +
Sbjct: 921 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSL 980
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA----EHTRGLIVMLPF----------KYISEIKNR 406
++++ E+K+ + HSEKLAI+F T + VM K++S++ NR
Sbjct: 981 LNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNR 1040
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRDA RFHHF G CSC DYW
Sbjct: 1041 EIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 181/442 (40%), Positives = 277/442 (62%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D+ G+++ MY K G + V +P +VI+W T+I+G AQNG A + ++ YN+M
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIME 442
Query: 65 MVG-FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123
G ++ T+VSV+ +CS+ L QG ++H ++K G LDV V++SL MY +CG L
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRL 502
Query: 124 DDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183
+D++ F + + V W+++IA +GFHG GE+A+ LF++M + + + +TFV+LL AC
Sbjct: 503 EDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562
Query: 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAII 243
SH GL ++G F++M Y P L+HY C+VD+ GR G L+ A I++M ++ +A I
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622
Query: 244 WKTLLSACKTHKSTDMAGRIAEE-ILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302
W LLSAC+ H + D+ G+IA E + V P+ +VLLSN++ASA +W+GV E R
Sbjct: 623 WGALLSACRVHGNVDL-GKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAH 681
Query: 303 ERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMH 362
+ ++K PG S +E+ N+V F G+++HP E+ L L +++K+ GYVPD +
Sbjct: 682 GKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQ 741
Query: 363 DMDSEEKEYNLKHHSEKLAIAFA------EHTRGLIVMLPF--------KYISEIKNREI 408
D++ +EKE+ L HSE+LAIAFA + T + L K+IS+I REI
Sbjct: 742 DVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREI 801
Query: 409 IVRDASRFHHFRNGKCSCGDYW 430
IVRD++RFHHF+NG CSCGDYW
Sbjct: 802 IVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 172/429 (40%), Positives = 267/429 (62%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75
Y + G + E + + MP R+ ++W +IAG +Q+G + + L + M G R ++ +F
Sbjct: 353 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 412
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135
S +S+C+++ L G+Q+H +VK G V ++L+ MY +CG ++++ F E
Sbjct: 413 SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 472
Query: 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195
D+V W++MIA Y HG GE A+ FE M+++ + +D T V++L ACSH GL +KG ++
Sbjct: 473 KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQY 532
Query: 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255
F M + Y P +HY C+VDLLGR G L++A L++NMP + +A IW TLL A + H
Sbjct: 533 FYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 592
Query: 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWL 315
+T++A A++I + P+++ YVLLSN++AS+ RW V + R MR++ VKK PG SW+
Sbjct: 593 NTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Query: 316 EIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKH 375
EI+N+ H F++GD+ HP EI +LEEL MK GYV T +HD++ EEKE +++
Sbjct: 653 EIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRY 712
Query: 376 HSEKLAIAFA----EHTRGLIVML----------PFKYISEIKNREIIVRDASRFHHFRN 421
HSE+LA+A+ R + V+ KY++ I R II+RD +RFHHF++
Sbjct: 713 HSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKD 772
Query: 422 GKCSCGDYW 430
G CSCGDYW
Sbjct: 773 GSCSCGDYW 781
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 169/444 (38%), Positives = 268/444 (60%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G E D+ S+L ++ K G + V M + I W ++I G AQN ++ L+ +
Sbjct: 189 GLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELF 248
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M+ GF ++ T SV+ +C+ LA L G Q H +VK L + ++L+ MY +C
Sbjct: 249 KRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILN--NALVDMYCKC 306
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G L+D+++ F + + DV+ WS+MI+ +G +EA+ LFE+M+ + N +T V +L
Sbjct: 307 GSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVL 366
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
+ACSH GL E G +F M K Y P EHY C++DLLG+ G LD+A L+ M + +
Sbjct: 367 FACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPD 426
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A+ W+TLL AC+ ++ +A A++++ ++P+DA Y LLSNI+A++++W V E R
Sbjct: 427 AVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTR 486
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MR+R +KKEPG SW+E+ Q+H F +GD SHP+ +E+ L +L + GYVP+T
Sbjct: 487 MRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFV 546
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGL--IVMLP-----------F-KYISEIKNR 406
+ D++ E+ E +L+HHSEKLA+AF T + ++ + F K S+++ R
Sbjct: 547 LQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIR 606
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
I++RD R+HHF++GKCSCGDYW
Sbjct: 607 SIVIRDPIRYHHFQDGKCSCGDYW 630
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 174/429 (40%), Positives = 267/429 (62%)
Query: 18 KSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVS 77
+ G + + +V M RN +W T+I +NG + LD + LM+ G RP T +S
Sbjct: 277 QKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLIS 336
Query: 78 VISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD 137
++S C+ LA+L G+Q+HA++V+ +DV V S L++MY +CG L S F D
Sbjct: 337 ILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKD 396
Query: 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQK-EFEANDVTFVSLLYACSHCGLKEKGMEFF 196
+++W+S+I+ Y HG GEEA+ +F +M + N+VTFV+ L ACS+ G+ E+G++ +
Sbjct: 397 IIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIY 456
Query: 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKS 256
+ M + KP HY C+VD+LGR G +EA +I +M V+ +A +W +LL AC+TH
Sbjct: 457 ESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQ 516
Query: 257 TDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLE 316
D+A A++++ + P+++ Y+LLSN++AS RW V+E R+ M+ R V+K PG SW E
Sbjct: 517 LDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTE 576
Query: 317 IKNQVHQFTMGD-KSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKH 375
++N+VH FT G SHP I L+EL ++ GY PD +HD+D EEK +LK+
Sbjct: 577 VENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKY 636
Query: 376 HSEKLAIAFA--EHTRGLIVML------------PFKYISEIKNREIIVRDASRFHHFRN 421
HSE+LA+A+A + + G+ + + K IS++K REII+RDA+RFHHFRN
Sbjct: 637 HSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRN 696
Query: 422 GKCSCGDYW 430
G+CSC DYW
Sbjct: 697 GECSCKDYW 705
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 142/391 (36%), Positives = 238/391 (60%)
Query: 2 FELDLVAGSSLAH----MYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVL 57
F+ L + SS+A+ M++KS + + ++ + +N++++ T + G +N E
Sbjct: 400 FKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAF 459
Query: 58 DQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117
+ + TF S++S + + ++ +G+QIH++VVK G S + V ++LISMY
Sbjct: 460 KLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMY 519
Query: 118 SRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177
S+CG +D + + F E +V+ W+SMI + HG + F QM ++ + N+VT+V
Sbjct: 520 SKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYV 579
Query: 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPV 237
++L ACSH GL +G F+ M + ++ KP++EHY C+VDLL R G L +A I MP
Sbjct: 580 AILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPF 639
Query: 238 KANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEF 297
+A+ ++W+T L AC+ H +T++ A +IL ++P + A Y+ LSNI+A A +W+ +E
Sbjct: 640 QADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEM 699
Query: 298 REAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDT 357
R M+ERN+ KE G SW+E+ +++H+F +GD +HP + +I L+ L +E+K GYVPDT
Sbjct: 700 RRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDT 759
Query: 358 GADMHDMDSE----EKEYNLKHHSEKLAIAF 384
+H ++ E EKE L HSEK+A+AF
Sbjct: 760 DLVLHKLEEENDEAEKERLLYQHSEKIAVAF 790
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 166/441 (37%), Positives = 273/441 (61%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
DLV+ ++L Y+ SG + E + + + M +N+++W+ +I+G A+NG E+ L ++ M+
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
GF P F I SC+ L GQQ HA+++K G + ++LI+MY++CG ++
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVE 469
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
++ + F D V W+++IAA G HG G EA++++E+M +K + +T +++L ACS
Sbjct: 470 EARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACS 529
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
H GL ++G ++FD M YR P +HY ++DLL R G +A ++I ++P K A IW
Sbjct: 530 HAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIW 589
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
+ LLS C+ H + ++ A+++ G+ P+ Y+LLSN+HA+ +W+ V+ R+ MR+R
Sbjct: 590 EALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDR 649
Query: 305 NVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDM 364
VKKE SW+E++ QVH F + D SHP + + +YL++L EM+ GYVPDT +HD+
Sbjct: 650 GVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDV 709
Query: 365 DSE-EKEYNLKHHSEKLAIAFA--EHTRGLIVMLP------------FKYISEIKNREII 409
+S+ KE L HSEK+A+AF + G + + F+++S + R+II
Sbjct: 710 ESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDII 769
Query: 410 VRDASRFHHFRNGKCSCGDYW 430
+RD RFHHFRNG+CSCG++W
Sbjct: 770 LRDRKRFHHFRNGECSCGNFW 790
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8S9M4 | PP198_ARATH | No assigned EC number | 0.6164 | 0.9860 | 0.6523 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-110 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-103 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-40 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-35 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-31 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-110
Identities = 165/439 (37%), Positives = 256/439 (58%), Gaps = 24/439 (5%)
Query: 11 SLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP 70
+L MY K G + + V MP + +AW +++AG A +G +E+ L Y MR G
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTF 130
D+ TF +I S LA L +Q HA +++ G LD+ ++L+ +YS+ G ++D+ F
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 131 LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE 190
+++ W+++IA YG HG+G +A+ +FE+M + N VTF+++L AC + GL E
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 191 KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
+G E F M + +R KPR HY C+++LLGR G LDEA A+IR P K +W LL+A
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503
Query: 251 CKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEP 310
C+ HK+ ++ AE++ G+ P+ YV+L N++ S+ R ++ E ++ + + P
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
Query: 311 GVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKE 370
+W+E+K Q H F GD+ HP+S EI L+EL E+ GYV + + D+D +E++
Sbjct: 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEK 623
Query: 371 YNLKHHSEKLAIAFAEHTRGLIVMLPF-------------------KYISEIKNREIIVR 411
+ ++HSEKLAIAF GLI + K+I+ + REI+VR
Sbjct: 624 VSGRYHSEKLAIAF-----GLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVR 678
Query: 412 DASRFHHFRNGKCSCGDYW 430
DASRFHHF+ GKCSCGDYW
Sbjct: 679 DASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 324 bits (833), Expect = e-103
Identities = 158/447 (35%), Positives = 249/447 (55%), Gaps = 27/447 (6%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G +V ++L MY K + + +V +P ++VI+W ++IAG N + L +
Sbjct: 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M + +P+ +T ++ +S+C+ + L G++IHA V++ G D + ++L+ +Y RC
Sbjct: 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++ + F E DVV W+ ++ Y HGKG A+ LF +M + ++VTF+SLL
Sbjct: 538 GRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACS G+ +G+E+F M +KY P L+HY CVVDLLGR G L EA I MP+ +
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+W LL+AC+ H+ ++ A+ I ++P Y+LL N++A A +W V+ R+
Sbjct: 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MRE + +PG SW+E+K +VH F D+SHP+ EI+ LE +MK G +
Sbjct: 717 MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSS 776
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYIS 401
M +++ + + HSE+LAIAF GLI +P K+IS
Sbjct: 777 MDEIEVSKDDI-FCGHSERLAIAF-----GLINTVPGMPIWVTKNLYMCENCHNTVKFIS 830
Query: 402 EIKNREIIVRDASRFHHFRNGKCSCGD 428
+I REI VRD +FHHF++G+CSCGD
Sbjct: 831 KIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 1e-40
Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 11/261 (4%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GFELD+ ++L MY+K G +V V MP R+ I+W +I+G +NG + L+ +
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
MR + PD +T SVIS+C L G+++H VVK G ++DV V +SLI MY
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++ K F E D V W++MI+ Y +G ++A+ + MEQ +++T S+L
Sbjct: 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCV----VDLLGRCGYLDEAAALIRNMP 236
AC+ G + G++ +L +K L Y V +++ +C +D+A + N+P
Sbjct: 397 SACACLGDLDVGVKLHELAERK-----GLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
Query: 237 VKANAIIWKTLLSA-CKTHKS 256
K + I W ++++ ++
Sbjct: 452 EK-DVISWTSIIAGLRLNNRC 471
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 2e-35
Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 10/301 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF +D+ +SL MY+ GS E EKV M ++ ++W +I+G +NGL + L+ Y
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
LM PD+IT SV+S+C+ L L G ++H + G V V ++LI MYS+C
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
C+D +++ F DV+ W+S+IA + + EA+ F QM + N VT ++ L
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAAL 496
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY--TCVVDLLGRCGYLDEAAALIRNMPVK 238
AC+ G G E + R + + ++DL RCG ++ A + +
Sbjct: 497 SACARIGALMCGKE---IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--E 551
Query: 239 ANAIIWKTLLSACKTHKSTDMAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSE 296
+ + W LL+ H MA + ++ GVNP + LL S QG+
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611
Query: 297 F 297
F
Sbjct: 612 F 612
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-32
Identities = 88/309 (28%), Positives = 138/309 (44%), Gaps = 31/309 (10%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GFE D + + M++K G L++ ++ MP RN+ +W T+I G G + +
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G + TFV ++ + + L + GQQ+H V+K G D V +LI MYS+C
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++D+ F V W+SM+A Y HG EEA+ L+ +M + TF ++
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 181 YACS-----------HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229
S H GL G D++ T +VDL + G +++A
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFP-LDIVAN-----------TALVDLYSKWGRMEDAR 380
Query: 230 ALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL--GVNPQDAAPYVLLSNIHAS 287
+ MP K N I W L++ H A + E ++ GV P +L S
Sbjct: 381 NVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL-----S 434
Query: 288 AKRWQGVSE 296
A R+ G+SE
Sbjct: 435 ACRYSGLSE 443
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 75/268 (27%), Positives = 132/268 (49%), Gaps = 4/268 (1%)
Query: 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF 68
G+++ M+++ G LV V MP R++ +W L+ G A+ G ++ L Y+ M G
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128
RPD TF V+ +C + L +G+++HA VV+ G LDV V+++LI+MY +CG + +
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188
F D + W++MI+ Y +G+ E + LF M + + + +T S++ AC G
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
+ G E +VK + ++ + G EA + M K +A+ W ++
Sbjct: 304 ERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMI 361
Query: 249 SACKTHKSTDMAGRIAE--EILGVNPQD 274
S + + D A E V+P +
Sbjct: 362 SGYEKNGLPDKALETYALMEQDNVSPDE 389
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 50/126 (39%), Positives = 65/126 (51%), Gaps = 25/126 (19%)
Query: 310 PGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEK 369
PG W E K + GD SHP S EEL +K+ G VP+T HD+D+EE
Sbjct: 1 PGCVWSEGK----KTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 370 EYN------LKHHSEKLAIAFAE-HTRGLIVMLP--------FKYISEIKNREIIVRDAS 414
N L H+EK A+A+ TR + V+ F+YI++ REIIVRD S
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPS 110
Query: 415 RFHHFR 420
RFHHF+
Sbjct: 111 RFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 6e-13
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF LD+VA ++L +Y K G + + V MP +N+I+W LIAG +G ++ +
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQI 94
M G P+ +TF++V+S+C QG +I
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185
DVV ++++I Y GK EEA+ LF +M+++ + N T+ L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 2/200 (1%)
Query: 50 NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV 109
+G E L M+ + D+ +V++ C + +G ++ + + + SL V +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 110 ISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF 169
++++SM+ R G L + F + D+ W+ ++ Y G +EA+ L+ +M
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 170 EANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229
+ TF +L C +G E V ++ + ++ ++ + +CG + A
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGRE-VHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 230 ALIRNMPVKANAIIWKTLLS 249
+ MP + + I W ++S
Sbjct: 243 LVFDRMPRR-DCISWNAMIS 261
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 43/194 (22%), Positives = 90/194 (46%), Gaps = 4/194 (2%)
Query: 68 FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127
F T+ +++ +C L ++ + ++ V +G D +++ ++ M+ +CG L D+
Sbjct: 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
Query: 128 KTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187
+ F E ++ W ++I G EA LF +M + +A TFV +L A + G
Sbjct: 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
Query: 188 LKEKGMEFFDLMVKKYRRKPRLEHYTC-VVDLLGRCGYLDEAAALIRNMPVKANAIIWKT 246
G + ++K +C ++D+ +CG +++A + MP K + W +
Sbjct: 239 SARAGQQLHCCVLKTGVVGDT--FVSCALIDMYSKCGDIEDARCVFDGMPEKT-TVAWNS 295
Query: 247 LLSACKTHKSTDMA 260
+L+ H ++ A
Sbjct: 296 MLAGYALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 39/314 (12%)
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
L++ G + D + ++IS+C++ + ++ E+V AG +V +LI +R G
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521
Query: 122 CL-----------DDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM--EQKE 168
+ +VK D V+++++I+A G G + A ++ +M E
Sbjct: 522 QVAKAFGAYGIMRSKNVK-------PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 169 FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEA 228
+ + +T +L+ AC++ G ++ E + M+ +Y K E YT V+ + G D A
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633
Query: 229 AALIRNMP---VKANAIIWKTLLSACKTHKSTDMAGRIAEE--ILGVNPQDAAPYVLLSN 283
++ +M VK + + + L+ D A I ++ G+ Y L
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMG 692
Query: 284 IHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEE 343
++AK W+ E E + +++K P VS + N + P+++E+
Sbjct: 693 ACSNAKNWKKALELYEDI--KSIKLRPTVSTM---NALITALCEGNQLPKALEV------ 741
Query: 344 LTSEMKLRGYVPDT 357
SEMK G P+T
Sbjct: 742 -LSEMKRLGLCPNT 754
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 51/270 (18%), Positives = 109/270 (40%), Gaps = 47/270 (17%)
Query: 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95
NV + LI G A+ G Y +MR +PD++ F ++IS+C + + + +
Sbjct: 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565
Query: 96 AEVVKAGASL---DVGVISSLISMYSRCGCLDDS-----------VKTFLEC-------- 133
AE+ KA D + +L+ + G +D + +K E
Sbjct: 566 AEM-KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 134 ------EYS--------------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173
+++ D V +S+++ G G ++A + + ++ +
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAAL-- 231
V++ SL+ ACS+ +K +E ++ +K + +P + ++ L L +A +
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYE-DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 232 -IRNMPVKANAIIWKTLLSACKTHKSTDMA 260
++ + + N I + LL A + D+
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82
+V+ + TLI G + G E+ L +N M+ G +P+ T+ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEF 169
V ++S+I+ Y GK EEA+ LF++M++K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.89 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.76 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.72 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.71 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.62 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.47 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.43 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.28 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.26 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.2 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.19 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.09 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.06 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.02 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.02 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.97 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.95 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.92 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.57 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.57 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.4 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.4 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.37 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.36 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.32 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.28 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.27 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.24 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.2 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.17 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.13 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.11 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.03 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.01 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.9 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.77 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.76 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.76 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.66 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.65 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.59 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.54 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.54 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.51 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.44 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.42 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.42 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.4 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.37 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.35 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.33 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.25 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.24 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.23 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.12 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.08 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.0 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.93 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.83 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.79 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.64 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.64 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.61 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.3 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.27 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.23 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.07 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.02 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.94 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.84 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.72 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.7 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.61 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.59 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.54 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.34 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.16 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.15 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.8 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.7 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.63 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.52 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.51 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.48 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.13 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.09 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.96 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.72 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.6 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.19 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.19 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.14 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.05 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.04 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.58 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.45 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.01 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.49 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.46 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.42 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.4 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.27 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.99 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.86 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.85 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.8 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.55 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.3 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.16 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 89.96 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.4 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.35 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.78 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.43 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.34 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.9 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 87.87 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.77 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.41 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.34 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 86.96 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 86.62 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.44 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.4 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.34 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.07 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.81 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.78 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.1 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.95 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.66 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 84.38 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.23 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.22 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 83.98 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 83.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.75 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.78 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.67 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.08 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.04 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.09 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 80.27 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-96 Score=740.86 Aligned_cols=430 Identities=38% Similarity=0.687 Sum_probs=423.9
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
|+.||..+||+||++|+++|++++|.++|+.|+++|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+|++.|++++|.++|+.|.+.|++||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|++.|+
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~ 493 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT 493 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQ 320 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~ 320 (430)
..+|++|+.+|+.+|+++.|..+++++.+++|.+..+|..|+++|++.|+|++|.++++.|+++|+.+.|++||+++++.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~ 573 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCe
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchhhhhhhcccccHHHHHHHhhhhcc----ceee--
Q 043370 321 VHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKHHSEKLAIAFAEHTRG----LIVM-- 394 (430)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~l~~~~e~la~~~~l~~~~----~~~~-- 394 (430)
+|.|.+|+..||+..+|+..|+++..+|++.||.||+.++++++++++|+..+.+||||||++|||+++| |||+
T Consensus 574 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~kn 653 (697)
T PLN03081 574 DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQS 653 (697)
T ss_pred EEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 6766
Q ss_pred --------chhhhhhhccCceEEEecCCccccccccccccCCCC
Q 043370 395 --------LPFKYISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430 (430)
Q Consensus 395 --------~~~k~is~~~~~~~~~~~~~~~h~f~~g~csc~~~~ 430 (430)
+++|+||++++|+|||||.+|||||++|+|||+|||
T Consensus 654 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 654 HRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 899999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-89 Score=707.54 Aligned_cols=425 Identities=37% Similarity=0.690 Sum_probs=415.5
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
|+.||..+||+||++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||++++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999986 58999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|+++||
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999997789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQ 320 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~ 320 (430)
..+|++|+.+|..+|+.+.|+.+.+++.+++|++...|..|.+.|+..|+|++|.++++.|+++|++++|++||+++++.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchhhhhhhcccccHHHHHHHhhhhcc----ceee--
Q 043370 321 VHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKHHSEKLAIAFAEHTRG----LIVM-- 394 (430)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~l~~~~e~la~~~~l~~~~----~~~~-- 394 (430)
+|.|..+|.+||+.++||..|+++..+|++.||.||+..++ ++++++|+..+.+||||||+||||++|| |||+
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~kn 815 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKN 815 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCC
Confidence 99999999999999999999999999999999999999887 5578899999999999999999999998 6666
Q ss_pred --------chhhhhhhccCceEEEecCCccccccccccccCC
Q 043370 395 --------LPFKYISEIKNREIIVRDASRFHHFRNGKCSCGD 428 (430)
Q Consensus 395 --------~~~k~is~~~~~~~~~~~~~~~h~f~~g~csc~~ 428 (430)
+++|+||++++|+|||||.+|||||++|+|||+|
T Consensus 816 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 816 LYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 8999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=440.99 Aligned_cols=349 Identities=23% Similarity=0.337 Sum_probs=320.1
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
|+.||+.+||+|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+|++.|..+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d 390 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKN 390 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCC
Confidence 999999999999999999999999999999999999999887 999999999999999999999999999999996 589
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhccchhHHHHHHHHHHh-CCCCCCCceeEEEE
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGV--NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE-RNVKKEPGVSWLEI 317 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~i 317 (430)
..+|++||.+|+++|+.++|.++|++|.+. .| |..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+...+...+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 999999999999999999999999999854 45 999999999999999999999999999975 68888764433322
Q ss_pred CCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchh
Q 043370 318 KNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSE 367 (430)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~ 367 (430)
.+....++.++++ +.+++.++.|+..++..-+..+
T Consensus 470 --------~~l~r~G~~~eA~-------~~~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 470 --------ELLGREGLLDEAY-------AMIRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred --------HHHHhcCCHHHHH-------HHHHHCCCCCCHHHHHHHHHHH
Confidence 3334455555554 3345678889886544333333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=450.58 Aligned_cols=398 Identities=23% Similarity=0.357 Sum_probs=352.4
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
|+.||+.++|+||++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+|++.|+++.|.++|..|.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++|++|+ +||
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d 454 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKD 454 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Confidence 999999999999999999999999999999999999999887 999999999999999999999999999999997 479
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQ 320 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~ 320 (430)
..+|+++|.+|++.|+.++|..+|++|.+..++|..+|..++.+|++.|..+.+.+++..|.+.|+.++.......+...
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 99999999999999999999999999985544599999999999999999999999999999999877654332221100
Q ss_pred ----------------------EEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchhhhhhhc---cc
Q 043370 321 ----------------------VHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNL---KH 375 (430)
Q Consensus 321 ----------------------~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~l---~~ 375 (430)
....+.++..|++..++. +++++|++.|+.||..++...+..+.+.+.+ ..
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 001134455677766666 8899999999999999988777777766554 33
Q ss_pred ccHHHHHHHhhhhcc---ceee----------chhhhhhhcc
Q 043370 376 HSEKLAIAFAEHTRG---LIVM----------LPFKYISEIK 404 (430)
Q Consensus 376 ~~e~la~~~~l~~~~---~~~~----------~~~k~is~~~ 404 (430)
..+.+.-.+|+.++. -+++ +|.+++.+++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 445555457776664 1111 6777777764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=433.81 Aligned_cols=358 Identities=17% Similarity=0.239 Sum_probs=321.3
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCC----CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP----IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV 76 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 76 (430)
|+.||..+||+||++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999999999999999997 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH--cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHh
Q 043370 77 SVISSCSELATLGQGQQIHAEVVK--AGASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDVVLWSSMIAAYGF 150 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~ 150 (430)
+++.+|++.|++++|.++|++|.+ .|+.||..+|++|+++|+++|++++|.++|++|. .++..+||++|.+|++
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 999999999999999999999986 6789999999999999999999999999999997 4577999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|++||.+|+++|++++|.+
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887 999999999999999999999999999
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 231 LIRNM---PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGV--NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 231 ~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+|++| ++.||..+|++||.+|++.|++++|.++|++|.+. .| |..+|..|+.+|.+.|++++|.+++++|.+.|
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99998 68899999999999999999999999999999854 45 89999999999999999999999999999999
Q ss_pred CCCCCceeEEEEC-------------CEEEEEEeCCCCCCCc-hHHHHHHHHHHHHHHHcCcccCCCCcccc
Q 043370 306 VKKEPGVSWLEIK-------------NQVHQFTMGDKSHPRS-MEIDLYLEELTSEMKLRGYVPDTGADMHD 363 (430)
Q Consensus 306 ~~~~~~~~~~~i~-------------~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~m~~~g~~p~~~~~~~~ 363 (430)
+.|+..++...++ ..+..|-.+ +++. .......-.++++|.+.|+.||..++...
T Consensus 785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 9988754433221 011111111 1111 01112234889999999999998765443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=421.58 Aligned_cols=344 Identities=18% Similarity=0.262 Sum_probs=318.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCC----CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP----IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
.||..+|+.||.+|++.|+++.|.++|+.|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4899999999999999999999999999996 579999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC------CCCHhHHHHHHHHHHhcC
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE------YSDVVLWSSMIAAYGFHG 152 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~d~~~~~~li~~~~~~g 152 (430)
|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999984 579999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALI 232 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 232 (430)
++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|++|+++|++.|++++|.++|
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 99999999999999999999999999999
Q ss_pred HhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 233 RNM---PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGV--NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 233 ~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
++| ++.||..+|++||.+|++.|++++|.++|++|.+. .| +..+|+.|+.+|++.|++++|.+++++|.+.|+.
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999 78899999999999999999999999999999754 45 8899999999999999999999999999999998
Q ss_pred CCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCc
Q 043370 308 KEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360 (430)
Q Consensus 308 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~ 360 (430)
|+..++...+ .+....+..+++. +++.+|++.|+.||....
T Consensus 752 Pd~~Ty~sLL--------~a~~k~G~le~A~----~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 752 PNTITYSILL--------VASERKDDADVGL----DLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred CCHHHHHHHH--------HHHHHCCCHHHHH----HHHHHHHHcCCCCCHHHH
Confidence 8875544433 3334455555544 899999999999997543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=186.84 Aligned_cols=297 Identities=11% Similarity=0.071 Sum_probs=246.9
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--C-CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPI--R-NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD---KITFVSVISSCSEL 85 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~ 85 (430)
....+...|++++|...|+++.. | +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456788999999999999863 3 556899999999999999999999999987542222 25678889999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--------HhHHHHHHHHHHhcCChHHH
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD--------VVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d--------~~~~~~li~~~~~~g~~~~A 157 (430)
|+++.|..+|.++.+.. +++..+++.++..|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 4478899999999999999999999999875321 22456778888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +.......++.++.+|.+.|++++|...++++ .
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998763 334567788889999999999999999999864 21222466888999999999999999999998 5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh---ccchhHHHHHHHHHHhCCCCCCCce
Q 043370 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS---AKRWQGVSEFREAMRERNVKKEPGV 312 (430)
Q Consensus 237 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 312 (430)
..|+...+..+...+.+.|++++|..+++++.+..| +...+..++..+.. .|+.+++..++++|.++++.++|..
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 567777778888899999999999999999999999 44567777766654 5689999999999999999999863
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-20 Score=194.71 Aligned_cols=296 Identities=11% Similarity=0.081 Sum_probs=233.9
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
.+...+..++..|.+.|++++|..+++.+. ..+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345667788888999999999999888775 3467788888899999999999999998888754 446677888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A 157 (430)
++...|++++|...++.+.+.. +.+..++..++..+.+.|++++|.++++.+.. .+...+..+...+...|++++|
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH
Confidence 8888899999999998888764 33677888888888888888888888888753 3667778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+. .+.+...+..+...|.+.|++++|...|+++ .
T Consensus 723 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 723 IQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 8888888775 355567777888888888888888888888763 3456777888888888888888888888877 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 237 VK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 237 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
.. ++..+++.+...+...|+ ++|+..++++.+..|+++..+..+..+|...|++++|.+.++++.+.+.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33 356777777777888887 7788888888877787777777888888888888888888888876553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=191.55 Aligned_cols=294 Identities=12% Similarity=0.061 Sum_probs=256.8
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
.+..++..+...|.+.|+.++|...|+++. ..+...+..++..|.+.|++++|+.+++++.+.. +.+..+|..+..
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 456788899999999999999999999874 3466788889999999999999999999998754 667888999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A 157 (430)
++...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++. +.+..+|..++..+...|++++|
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998865 3467888899999999999999999998865 34678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
.++++.+.+.+ +++...+..+...+...|++++|...|..+... .|+..++..+..++.+.|++++|.+.++++ .
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998875 567778888889999999999999999998754 466678888999999999999999999887 3
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 237 VK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 237 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.. .+...+..+...|...|+.++|...++++.+..|+++.++..++..+...|+ .+|...+++..+.
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 33 3677888888889999999999999999999999999999999999999999 8899999988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=175.76 Aligned_cols=303 Identities=11% Similarity=0.050 Sum_probs=237.6
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHh
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD---VGVISSLISMYSR 119 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~ 119 (430)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999874 44566889999999999999999999999988643322 3567889999999
Q ss_pred cCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhhcCcHHHH
Q 043370 120 CGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND----VTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 192 (430)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..++. ..+..+...+...|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999864 46789999999999999999999999999886533322 2355677788899999999
Q ss_pred HHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 193 MEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
..+++++.+. .+.+...+..+...|.+.|++++|.++++++ ...|+ ..++..+..+|...|+.++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999864 2334667888999999999999999999998 33454 45688899999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 043370 270 VNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMK 349 (430)
Q Consensus 270 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 349 (430)
..|+ ...+..++..+.+.|++++|..+++++.+.. |+.......+.. ......+++..+.. .++++|.
T Consensus 278 ~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~-----~~~~~~~g~~~~a~----~~~~~~~ 345 (389)
T PRK11788 278 EYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDY-----HLAEAEEGRAKESL----LLLRDLV 345 (389)
T ss_pred hCCC-chHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHH-----hhhccCCccchhHH----HHHHHHH
Confidence 9994 4566899999999999999999999887653 332111101100 00011234455555 5677788
Q ss_pred HcCcccCCCCc
Q 043370 350 LRGYVPDTGAD 360 (430)
Q Consensus 350 ~~g~~p~~~~~ 360 (430)
+.+++||+.++
T Consensus 346 ~~~~~~~p~~~ 356 (389)
T PRK11788 346 GEQLKRKPRYR 356 (389)
T ss_pred HHHHhCCCCEE
Confidence 88888887744
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-23 Score=157.29 Aligned_cols=98 Identities=58% Similarity=0.880 Sum_probs=87.3
Q ss_pred ceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchhhh--------hhhcccccHHHHH
Q 043370 311 GVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEK--------EYNLKHHSEKLAI 382 (430)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~l~~~~e~la~ 382 (430)
+++|+++ |.|.+|+.+||+. ++..+|...||.|+...+.++++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5788887 9999999999998 566788889999999999988877765 5688999999999
Q ss_pred HHhhhhcc----c-eee----chhhhhhhccCceEEEecCCcccccc
Q 043370 383 AFAEHTRG----L-IVM----LPFKYISEIKNREIIVRDASRFHHFR 420 (430)
Q Consensus 383 ~~~l~~~~----~-~~~----~~~k~is~~~~~~~~~~~~~~~h~f~ 420 (430)
||||+++. . ||+ +++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINTRVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HhcccceeEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999963 4 676 89999999999999999999999996
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-17 Score=163.18 Aligned_cols=292 Identities=10% Similarity=-0.051 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE 84 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 84 (430)
....++..+...|++++|...|+++.. .+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++..
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVL 156 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 444555666678888888888887752 356677778888888888888888888887752 3345667777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CHhHHHHHHHHHHhcCChHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS----DVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
.|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+. +...+..+...+.+.|++++|+..
T Consensus 157 ~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 157 MDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888877665443 33333333 3467788888888888775432 233445556777888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH----HHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEK----GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM- 235 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 235 (430)
|++..+.. +.+...+..+...+...|+.++ |...|++..+. .+.+...+..+...+.+.|++++|...+++.
T Consensus 235 ~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 235 GESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88887753 3345667777788888888875 78888887753 2235677888888888888888888888877
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 236 PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 236 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
...| +...+..+...+...|++++|...++++.+.+|.+...+..+..++...|++++|...++...+..
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4445 355666777778888888888888888888888666656666778888888888888888876543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-16 Score=158.60 Aligned_cols=289 Identities=9% Similarity=-0.046 Sum_probs=222.2
Q ss_pred HHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
++..+.+.|++++|..+++... ..+...+..++.+....|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 4556677889999988887764 2345566667777788999999999999988763 44566777788888888999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
++|...++++.+.. +.+..++..+...+...|+.++|...++.+. ..+...+..+ ..+.+.|++++|+..++.+.
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 99999998888763 3367788888888999999999988887653 2234444333 34778899999999998887
Q ss_pred HCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH----HHHHHHhC-CCCC-
Q 043370 166 QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE----AAALIRNM-PVKA- 239 (430)
Q Consensus 166 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~~~p- 239 (430)
+....++......+..++...|+.++|...++.+... .+.+...+..+..+|.+.|++++ |...|++. ...|
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 7643344455555667788889999999999888753 23356777888888888898885 78888877 4455
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+...+..+...+...|++++|...++++.+++|.++..+..+..+|...|++++|...++.+.+.+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 466788888888889999999999999988888888888888889999999999998888887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-16 Score=154.61 Aligned_cols=224 Identities=12% Similarity=-0.001 Sum_probs=121.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcC
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHG 152 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g 152 (430)
..+...+...|++++|...+++.++... .+...|..+...+...|++++|...|++.. +.+...|..+...+...|
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3333344445555555555555554321 134455555555555566666655555432 234555555666666666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALI 232 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 232 (430)
++++|+..|++..+.. +.+...+..+...+.+.|++++|...|+...+. .+.+...++.+..++...|++++|.+.|
T Consensus 414 ~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666665542 223444555555566666666666666665542 1223455666666666666666666666
Q ss_pred HhC-CCCCCH-H-------HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 233 RNM-PVKANA-I-------IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 233 ~~m-~~~p~~-~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
++. ...|+. . .++..+..+...|++++|..++++.++++|.+..++..++.++...|++++|.+.+++..+
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 654 222210 0 1111112233346666666666666666666666666666666677777777666666543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-17 Score=149.85 Aligned_cols=287 Identities=17% Similarity=0.152 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH-------
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV------- 76 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------- 76 (430)
.+|+.+.+.+-..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+.++. .|+.....
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 5788899999999999999999998763 36789999999999999999999999888764 45443322
Q ss_pred ----------------------------HHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 77 ----------------------------SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 77 ----------------------------~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
.|...+...|+...|++-|++.++..+. -...|..|.+.|...+.++.|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHH
Confidence 2222334446666666666666654321 34566667777777777777777
Q ss_pred HHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC
Q 043370 129 TFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR 204 (430)
Q Consensus 129 ~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 204 (430)
.|.... ....+.+..|...|...|+.+-|++.|++.++. .|+ ...|+.|..++-..|++.+|.+.+.+...
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--- 348 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--- 348 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH---
Confidence 665432 234444555555555566666666666665553 343 34566666666666666666666665543
Q ss_pred Ccc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 205 RKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 205 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
+.| .....+.|...|...|.+++|..+|... .+.|. ....+.|...|.++|++++|+..+++.+++.|.-..+|+.+
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 122 2344455555555555555555555544 33443 23445555555555555555555555555555545555555
Q ss_pred HHHHHhccchhHHHHHHHHH
Q 043370 282 SNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 282 ~~~~~~~g~~~~a~~~~~~m 301 (430)
.+.|-..|+.+.|.+.+.+.
T Consensus 429 Gnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred chHHHHhhhHHHHHHHHHHH
Confidence 55555555555555554443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-15 Score=149.93 Aligned_cols=292 Identities=9% Similarity=0.003 Sum_probs=234.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
+......|.+.|+++.|+..|++.. .|+...|..+..+|.+.|++++|++.+++.++.. +.+...+..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4467788999999999999999864 5678889999999999999999999999999864 445678888999999999
Q ss_pred ChHHHHHHHHHHHHcCCC-----------------------------CcHhHHHHH------------------------
Q 043370 87 TLGQGQQIHAEVVKAGAS-----------------------------LDVGVISSL------------------------ 113 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~-----------------------------~~~~~~~~l------------------------ 113 (430)
++++|..-+..+...+.. ++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 999998765443321100 000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHhccCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH
Q 043370 114 ------ISMY------SRCGCLDDSVKTFLECEY------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DV 174 (430)
Q Consensus 114 ------i~~~------~~~g~~~~A~~~~~~~~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 174 (430)
+..+ ...+++++|.+.|+.... .+...|+.+...+...|++++|+..|++..+. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 0100 123578899999987652 24567888889999999999999999999885 454 56
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACK 252 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 252 (430)
.|..+...+...|++++|...|+.+.+. .+.+...|..+...|...|++++|...|++. ...| +...|..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 7888888999999999999999999764 2335788999999999999999999999987 5556 4677778888899
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+.|++++|+..+++.++..|.++..+..+..++...|++++|.+.+++..+..
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999876543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=146.37 Aligned_cols=279 Identities=14% Similarity=0.121 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCCCC---HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPIRN---VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD-KITFVSVISSC 82 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 82 (430)
++|+.|...+-..|++..|+.-|++..+-| ...|-.|...|-..+.+++|+..+.+.... +|+ ...+..+...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIY 296 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEE
Confidence 457777777778888888888887765432 457777888888888888888888877764 444 56677777777
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~ 159 (430)
...|+++.|+..|++.++..+. -...|+.|.+++-..|++.+|.+.|+... .....+.+.|...|...|..++|..
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 8888888888888888775322 46778888888888888888888888754 3456777888888888888888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 160 LFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 160 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
+|....+ +.|. ...++.|...|-+.|++++|...+++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+. .
T Consensus 376 ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 376 LYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 8888776 3454 4567888888888888888888888876 56775 467888888888888888888888776 6
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH
Q 043370 237 VKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 237 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
++|. ....+.|.+.|...|++.+|+..++..++++|+-+.+|..++.+.--..+|.+
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 6675 45677788888888888888888888888888888888888777765555555
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-14 Score=153.52 Aligned_cols=285 Identities=13% Similarity=0.063 Sum_probs=155.5
Q ss_pred HHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHHHH------------H
Q 043370 13 AHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP-DKITF------------V 76 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~------------~ 76 (430)
...+...|++++|+..|++... .+...+..|...|.+.|++++|+..|++..+..... +...+ .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4445556666666666655431 245556666666666666666666666655532111 11111 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHH------------
Q 043370 77 SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLW------------ 141 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~------------ 141 (430)
.....+.+.|++++|...++++++... .+...+..+...|...|++++|++.|++... .+...+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 112344555666666666666655432 2444555556666666666666666655431 112222
Q ss_pred ------------------------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH
Q 043370 142 ------------------------------SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 142 ------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 191 (430)
..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 122333445677777777777776642 2234556666677777777777
Q ss_pred HHHHHHHHhhhcCCccCHhHHH--------------------------------------------HHHHHHhhcCCHHH
Q 043370 192 GMEFFDLMVKKYRRKPRLEHYT--------------------------------------------CVVDLLGRCGYLDE 227 (430)
Q Consensus 192 a~~~~~~~~~~~~~~p~~~~~~--------------------------------------------~li~~~~~~g~~~~ 227 (430)
|...++++.+... .+...+. .+.+.+...|+.++
T Consensus 514 A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 7777777654311 1221111 12233444455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 228 AAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 228 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|.++++.-+ ++...+..+...+...|+.++|+..++++++.+|.++.++..++.+|...|++++|.+.++...+
T Consensus 592 A~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 555554322 23334455555566677777777777777777776666777777777777777777776665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-14 Score=151.82 Aligned_cols=285 Identities=8% Similarity=0.009 Sum_probs=200.5
Q ss_pred HHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--------
Q 043370 13 AHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS-------- 81 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-------- 81 (430)
...+.+.|++++|...|++... .+...+..+...+...|++++|++.|++..+.. +.+...+..+...
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 4567789999999999987752 366788888999999999999999999998753 2334444433333
Q ss_pred ----------------------------------HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 82 ----------------------------------CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 82 ----------------------------------~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
+...|++++|.+.+++.++..+. +..++..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 23456666666666666655322 4555566666666666666666
Q ss_pred HHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHhhhcCcHHHHHHH
Q 043370 128 KTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDV---------TFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 128 ~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~ 195 (430)
..|+++. ..+...+..+...+...++.++|+..++++......++.. .+..+...+...|+.++|.++
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 6666542 2244444444444555666666666666543322111111 122344556677777777777
Q ss_pred HHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
++. .+++...+..+...|.+.|++++|.+.|++. ...| +...+..+...+...|+.++|...++.+.+..|+
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 662 2345567788899999999999999999987 4455 5778888999999999999999999999999998
Q ss_pred CChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 274 DAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
++..+..+..++...|++++|.++++.+....
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888899999999999999999999987654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-13 Score=141.09 Aligned_cols=296 Identities=8% Similarity=-0.045 Sum_probs=220.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
...+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l 126 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHH
Confidence 3468889999999999999999999843 3467788889999999999999999999998863 44555 88888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---------------------------
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--------------------------- 135 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------- 135 (430)
...|+.++|...++++.+..+. +..++..+...+.+.|..++|.+.++....
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 9999999999999999987544 666767778888777777766655553221
Q ss_pred ------------------------CCHh-HH----HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhh
Q 043370 136 ------------------------SDVV-LW----SSMIAAYGFHGKGEEAINLFEQMEQKEFE-ANDVTFVSLLYACSH 185 (430)
Q Consensus 136 ------------------------~d~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~ 185 (430)
|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. .-..+..++..
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~ 284 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLK 284 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh
Confidence 1100 00 01123345678899999999999887532 332 22235678889
Q ss_pred cCcHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------C---HHHHHH
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-------------N---AIIWKT 246 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~---~~~~~~ 246 (430)
.|++++|..+|+++.+.....+ .......+..++...|++++|..+++.+ ...| + ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 9999999999999875311111 1345666777888999999999998887 2222 2 123455
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+...+...|+.++|+.+++++....|.++..+..++.++...|++++|++.+++..+..
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 66678888999999999999999999899999999999999999999999999876643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-13 Score=137.87 Aligned_cols=298 Identities=9% Similarity=0.001 Sum_probs=221.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPI--R-NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+...+..+...+.+.|++++|...+++... | +.. |..+...+...|++++|+..++++.+.. +.+...+..+..+
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~ 159 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA 159 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456677888999999999999999998752 3 556 8889999999999999999999999863 3344445555555
Q ss_pred HhccCChHH----------------------------------------------HHHHHHHHHHc-CCCCcHh-H----
Q 043370 82 CSELATLGQ----------------------------------------------GQQIHAEVVKA-GASLDVG-V---- 109 (430)
Q Consensus 82 ~~~~g~~~~----------------------------------------------a~~~~~~~~~~-g~~~~~~-~---- 109 (430)
+...+..+. |...++.+.+. ...|+.. .
T Consensus 160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 555455443 33344444432 1122211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---H-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYSD---V-VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA---NDVTFVSLLYA 182 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~d---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a 182 (430)
....+..+...|++++|+..|+.+...+ + ..-..+...|...|++++|+..|+++.+..... .......+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1111234457799999999999987432 1 112225678999999999999999987653111 12445667778
Q ss_pred hhhcCcHHHHHHHHHHHhhhcC----------CccC---HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYR----------RKPR---LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTL 247 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 247 (430)
+...|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~l 399 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDY 399 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8999999999999999976410 1122 234567788899999999999999997 3345 57788889
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
...+...|+++.|+..++++++++|++...+..++..+...|++++|+.+++.+.+.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=141.39 Aligned_cols=256 Identities=17% Similarity=0.153 Sum_probs=112.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKIT-FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 120 (430)
.+...+.+.|++++|++++++......+|+... |..+...+...++.+.|.+.++++.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456778899999999999976554432344444 444555666788999999999999887644 66777778877 789
Q ss_pred CCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 121 GCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 121 g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
+++++|.+++...- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887753 3567778888999999999999999999987543 34566778888888999999999999999
Q ss_pred HHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 198 LMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 198 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
+..+. .| +......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...+++....+|.|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99864 55 5778889999999999999988887776 112456778899999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
+.....+..++...|+.++|.+++++.-
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-13 Score=125.98 Aligned_cols=274 Identities=11% Similarity=0.089 Sum_probs=211.1
Q ss_pred cCChHHHHHHHccCCCC--CHH-HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 043370 19 SGSLVEGEKVIRLMPIR--NVI-AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV--SVISSCSELATLGQGQQ 93 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 93 (430)
.|+++.|.+.+...++. ++. .|-....+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 59999999999876643 233 3333344458999999999999999875 56654333 34567788999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CH--------hHHHHHHHHHHhcCChHHHHHHHH
Q 043370 94 IHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS---DV--------VLWSSMIAAYGFHGKGEEAINLFE 162 (430)
Q Consensus 94 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~--------~~~~~li~~~~~~g~~~~A~~~~~ 162 (430)
.++.+.+..+. +..+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999988644 7889999999999999999999999887642 11 234444444445556677777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 043370 163 QMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-N 240 (430)
Q Consensus 163 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 240 (430)
.+.+. .+.+......+..++...|+.++|..++++..+. +|+... .++.+....++.+++.+..++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76443 3557778888999999999999999999998753 445432 2233344569999999999887 4556 4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
...+.++...|...+++++|...|+.+.+..| +...|..|..++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55677888889999999999999999999999 67788899999999999999999998653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-12 Score=134.75 Aligned_cols=260 Identities=9% Similarity=0.015 Sum_probs=202.1
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56677777777766 7888899988887765 466655555566667889999999999887654 344455667788
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHhHHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYSDVVLWS---SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~d~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
.+.+.|+.++|...|+.....++..++ .+.....+.|++++|+..|++..+. .|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 888999999999999876543332222 3333344559999999999998875 56778888888899999999999
Q ss_pred HHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 193 MEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
...+++.... .| +...++.+...+...|++++|...+++. ...| +...+..+..++...|++++|+..+++..+
T Consensus 629 ~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998753 44 5677888888899999999999999887 4555 567788888889999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 270 VNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 270 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
++|++..+............+++.+.+.++.--...
T Consensus 706 l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999888888888888888888888888777654433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-12 Score=131.08 Aligned_cols=288 Identities=11% Similarity=0.040 Sum_probs=220.3
Q ss_pred HHHHHHHHcCChHHHHHHHccCCC-C-----CHHHHHHHHHHHHHCCC---hhHHHHH----------------------
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPI-R-----NVIAWITLIAGKAQNGL---AEDVLDQ---------------------- 59 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~---------------------- 59 (430)
.+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+. ..+++.+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 344455678999999999987653 1 33455567777777766 3334333
Q ss_pred HHHHHHC-CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 043370 60 YNLMRMV-GF-RP--DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135 (430)
Q Consensus 60 ~~~m~~~-g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 135 (430)
+...... +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++..
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1111111 11 33 56677777777666 88889999888877653 4544444556666799999999999997653
Q ss_pred --CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH
Q 043370 136 --SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213 (430)
Q Consensus 136 --~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 213 (430)
++...+..+...+.+.|+.++|...|++..+.+ +++...+..+.......|++++|...+++..+ ..|+...+.
T Consensus 538 ~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~ 613 (987)
T PRK09782 538 HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYV 613 (987)
T ss_pred cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHH
Confidence 455567778888999999999999999998864 33333344444555677999999999999985 467888999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 214 CVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
.+..++.+.|++++|...+++. ...| +...+..+...+...|+.++|+..+++.++.+|.++..+..+..++...|++
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999988 5566 4667777777899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 043370 292 QGVSEFREAMRERN 305 (430)
Q Consensus 292 ~~a~~~~~~m~~~g 305 (430)
++|...+++..+..
T Consensus 694 ~eA~~~l~~Al~l~ 707 (987)
T PRK09782 694 AATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-11 Score=116.68 Aligned_cols=277 Identities=12% Similarity=0.017 Sum_probs=184.4
Q ss_pred HcCChHHHHHHHccCCC--CC-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHH
Q 043370 18 KSGSLVEGEKVIRLMPI--RN-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK--ITFVSVISSCSELATLGQGQ 92 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~ 92 (430)
..|+++.|.+.+.+..+ |+ ...+-....++.+.|++++|.+.+.+..+. .|+. ....+....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46888888888876653 33 333444456677788888888888888764 3443 23344566777788888888
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHH----HHHHHHHhcCChHHHHHHHHHHH
Q 043370 93 QIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS---DVVLWS----SMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 93 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
..++.+.+..+. +..+...+...|.+.|++++|.+.+....+. +...+. ....++...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888887633 6778888888888889998888888876632 332221 11112233333334444555554
Q ss_pred HCC---CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH-HHHHHHH--hhcCCHHHHHHHHHhC-CCC
Q 043370 166 QKE---FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY-TCVVDLL--GRCGYLDEAAALIRNM-PVK 238 (430)
Q Consensus 166 ~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~m-~~~ 238 (430)
... .+.+...+..+...+...|+.++|.+.+++..+. .|+.... ..++..+ ...++.+.+.+.++.. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 432 1136677777888888889999999888888764 3433210 0122222 3346777777777766 333
Q ss_pred CC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 239 AN-A--IIWKTLLSACKTHKSTDMAGRIAE--EILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 239 p~-~--~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
|+ + ....++...|.+.|++++|.+.|+ ...+..| ++..+..+...+.+.|+.++|.+++++-
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 2 455677777888899999999888 4566777 5566778888889999998888888864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=121.97 Aligned_cols=274 Identities=12% Similarity=-0.012 Sum_probs=212.7
Q ss_pred ChHHHHHHHccCCC--CCHH-HHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043370 21 SLVEGEKVIRLMPI--RNVI-AWITLIAGKAQNGLAEDVLDQYNLMRMVG--FRPDKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 21 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
+..+|...|...+. +|+- ....+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 56788999988763 3443 34456788999999999999999998752 11256788888765432 2222333
Q ss_pred H-HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 96 A-EVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS---DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 96 ~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
. .+.+. -+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2 23333 2346889999999999999999999999987643 5678888888888889999999999988753 33
Q ss_pred C-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043370 172 N-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTL 247 (430)
Q Consensus 172 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 247 (430)
. --.|..+...|.+.++++.|.-.|+++. .+.| +.....++...+.+.|+.|+|++++++. ..+| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 3 2456677888999999999999999987 4566 5567777888999999999999999998 4444 44444445
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
...+...++.++|+..++++.++-|++...|..++..|-+.|+.+.|..-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 556778899999999999999999999999999999999999999999888776543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-12 Score=121.44 Aligned_cols=244 Identities=14% Similarity=0.126 Sum_probs=196.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHhcCCHHH-HHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGA--SLDVGVISSLISMYSRCGCLDD-SVK 128 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~-A~~ 128 (430)
+..+|+.+|.++... +.-+......+..+|...+++++++.+|+.+.+... .-+..+|.+.+--.-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568999999996554 333446667789999999999999999999877531 1267788777665543222222 222
Q ss_pred HHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc
Q 043370 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP 207 (430)
Q Consensus 129 ~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 207 (430)
+. .+.+..+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+ ..
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22 233457899999999999999999999999999885 45 67899988888888999999999999876 34
Q ss_pred CHhHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 208 RLEHYTC---VVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 208 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
+..+|++ |.-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|+++++++..++|.|+..-.--+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5666665 566789999999999999998 7788 5666777777799999999999999999999999999999999
Q ss_pred HHHHhccchhHHHHHHHHHHhC
Q 043370 283 NIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..+...+++++|.+.++++++-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999763
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-14 Score=127.91 Aligned_cols=251 Identities=13% Similarity=0.181 Sum_probs=110.0
Q ss_pred HHHHHHHHcCChHHHHHHHcc-CC----CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043370 11 SLAHMYMKSGSLVEGEKVIRL-MP----IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL 85 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~-m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 85 (430)
.+..++.+.|++++|.++++. .. ..|..-|..+.......+++++|++.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 568889999999999999954 32 2366677777778888999999999999999875 2255566677766 688
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE-----YSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+++++|.++.....+.. ++...+..++..|.+.|+++++.++++... +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988776543 466777889999999999999999998853 35778899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043370 161 FEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVK 238 (430)
Q Consensus 161 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 238 (430)
|++..+. .| |......++..+...|+.+++.+++....+. .+.+...+..+..+|...|+.++|...|++. ...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999986 45 4677888999999999999999999998765 2556778889999999999999999999998 434
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 239 A-NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 239 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
| |+.....+..++...|+.++|..+.+++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 677777888889999999999999888753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=117.00 Aligned_cols=252 Identities=10% Similarity=0.063 Sum_probs=193.9
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
..|++++|.+.+....+..-.| ...|.....+..+.|+++.+.+.+.++.+....+...........+...|+++.|..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3699999998888765542111 233444455557899999999999999875433222333345789999999999999
Q ss_pred HHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhhcCcHHHHHHHHHH
Q 043370 129 TFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-------VTFVSLLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 129 ~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~ 198 (430)
.++.+. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999875 347788889999999999999999999999988754332 2334444444455566777777777
Q ss_pred HhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 199 MVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 199 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
+.+. .+.++.....+...+.+.|+.++|.+.+++. ...||.... ++.+....++.+.+.+.++...+..|+|+..
T Consensus 255 lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l 330 (398)
T PRK10747 255 QSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLL 330 (398)
T ss_pred CCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHH
Confidence 7553 3457888899999999999999999999887 544555322 3334456699999999999999999999999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+..+...+...|+|++|.+.|+...+..
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-11 Score=118.01 Aligned_cols=268 Identities=9% Similarity=-0.006 Sum_probs=195.1
Q ss_pred HHHHHHHHH--HHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 39 AWITLIAGK--AQNGLAEDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 39 ~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
.+..+..+. ...|+++.|.+.+.+..+. .|+. ..+.....+..+.|+.+.+.+.+.+..+....+...+.-....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 344455553 4689999999999888765 4554 4445556777888999999999999887643433445555688
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHh---hhcCc
Q 043370 116 MYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV-SLLYAC---SHCGL 188 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~---~~~g~ 188 (430)
.+...|+++.|...++.+. +.+...+..+...|.+.|++++|.+++..+.+.++. +...+. .-..++ ...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999876 347778889999999999999999999999998754 333332 111221 22333
Q ss_pred HHHHHHHHHHHhhhc--CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCChhHHHH
Q 043370 189 KEKGMEFFDLMVKKY--RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAII---WKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~---~~~ll~~~~~~~~~~~a~~ 262 (430)
.+++.+.+..+.+.. ..+.+...+..++..+...|+.++|.+++++. ...||... ...........++.+.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 333444555554431 11237888999999999999999999999988 44565442 1122222344578899999
Q ss_pred HHHHHhcCCCCCC--hhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCC
Q 043370 263 IAEEILGVNPQDA--APYVLLSNIHASAKRWQGVSEFREAMRERNVKKE 309 (430)
Q Consensus 263 ~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 309 (430)
.+++..+..|+|+ ....++...+.+.|+|++|.+.|+........|+
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 9999999999999 8888999999999999999999995433333343
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=126.30 Aligned_cols=270 Identities=15% Similarity=0.189 Sum_probs=200.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 043370 58 DQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD 137 (430)
Q Consensus 58 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d 137 (430)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667888999999999999999999999999998 9999988888889999999999999999988775 778
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
..+|++|..+|.++||... |+...+ -...+...++..|....-..++..+.-..+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8999999999999999765 333332 23344455666666666666666553333444444 34566
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHH
Q 043370 218 LLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKS-TDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
...-.|.++.+.++...+|...-......++.-+..... +++-....+...+ .| ++.+|..++..-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 677788999999999888644211122223555555443 3333344444444 55 89999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchh
Q 043370 297 FREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSE 367 (430)
Q Consensus 297 ~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~ 367 (430)
++.+|+++|++..+.+.|..+-+ . +....++.+++-|++.|+.|+..+...-+.++
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 99999999999999999987633 1 12345668889999999999998765544333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-10 Score=117.44 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=128.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC----CccCHhHHHHHHHHHhh
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR----RKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~ 221 (430)
-++...|++.++++.|+.|...|.+....+-..+.++|...+.+++|..++..+....+ ..++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 45677888999999999999888665566788899999999999999999999876422 23344556788999999
Q ss_pred cCCHHHHHHHHHhCCC--------------CC--CH-HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 222 CGYLDEAAALIRNMPV--------------KA--NA-IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 222 ~g~~~~A~~~~~~m~~--------------~p--~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
.+++++|..+++++.- .| |= .....++..+.-.|+..+|++.++++....|.|......+..+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999998821 12 21 2234455668889999999999999999999999999999999
Q ss_pred HHhccchhHHHHHHHHHHhC
Q 043370 285 HASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~ 304 (430)
+...|.+.+|++.++.....
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-11 Score=109.96 Aligned_cols=272 Identities=13% Similarity=0.141 Sum_probs=209.8
Q ss_pred HHHHcCChHHHHHHHccCCCCCHHH-----HHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 15 MYMKSGSLVEGEKVIRLMPIRNVIA-----WITLIAGKAQNG-LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 15 ~~~~~g~~~~A~~~f~~m~~~~~~~-----~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
-|.+.|+++.|.+++.-..++|..+ -|.-+--|.+-| ++..|.+.-+..+... +-|......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4778999999998888776554322 232233344444 5777777776665432 33344433333444567999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
++|.+.|++.+...-......|| +.-.+-+.|++++|++.|-.+. ..++...-.+.+.|-...+...|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999998764433333333 4556788999999999997754 4677777788889999999999999998776
Q ss_pred HCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 043370 166 QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIW 244 (430)
Q Consensus 166 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 244 (430)
.. ++.|+..+..|...|-+.|+-.+|.+++-.--+ -++.+.++...|..-|....-+++|...|++. -++|+..-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 54 566788899999999999999999988765432 24558889999999999999999999999998 678999999
Q ss_pred HHHHHHH-HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 245 KTLLSAC-KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 245 ~~ll~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
..|+..| ++.|++..|..+++...+..|.+......|++.+...|..
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999885 6689999999999999999999999999999999887743
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-11 Score=108.47 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=92.2
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 043370 27 KVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD 106 (430)
Q Consensus 27 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 106 (430)
-+|+..| +...+|..||.+.++-...+.|.+++++-.....+.+..+||.+|.+-. +..++++..+|......||
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCc
Confidence 4444444 3567889999999999999999999999888777889999999988754 3445888999999999999
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHh----ccC----CCCHhHHHHHHHHHHhcCCh
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFL----ECE----YSDVVLWSSMIAAYGFHGKG 154 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~----~~~----~~d~~~~~~li~~~~~~g~~ 154 (430)
..|+|+++.+.++.|+++.|.+.+- +|+ +|...+|..+|..+++.++.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 9999999999999998887755432 222 34455555555555555444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-11 Score=106.52 Aligned_cols=197 Identities=13% Similarity=0.047 Sum_probs=157.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
....+..+...|...|++++|...|++.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677778888888888888888888654 3356778888888888999999999999888763 3455677777888
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 260 (430)
+...|++++|.+.++...+..........+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988764222234456777888889999999999999887 3344 456777888889999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...+++.....|.++..+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888777888888889999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-10 Score=113.35 Aligned_cols=288 Identities=19% Similarity=0.216 Sum_probs=201.7
Q ss_pred HHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
..+...-.|++++|.+++.++.+ ++...|.+|...|-+.|+.++++..+-..-..+ +-|...|..+.....+.|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33444445999999999988753 467889999999999999999988775554432 45677888888888899999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH------------------------------
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDV------------------------------ 138 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~------------------------------ 138 (430)
++|.-.|.++++.. +++....---..+|-+.|+...|...|.++-+.++
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998875 44677777778888889998888888776542111
Q ss_pred --------------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HH
Q 043370 139 --------------VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF--------------------------VS 178 (430)
Q Consensus 139 --------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ 178 (430)
..++.++..|.+...++.|......+......+|..-+ ..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 12233333344444444444444444331111111100 01
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSACKT 253 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~ 253 (430)
+.-++.+....+....+....... ...| +...|.-+.++|...|++.+|+.+|..+ +..-+...|-.+..+|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 111112222222222222222222 3223 4567888999999999999999999998 222367899999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
.|..+.|.+.++.++.+.|.+..+-..|...+-..|+.++|.+++..|.
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999886
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-10 Score=115.77 Aligned_cols=287 Identities=10% Similarity=0.045 Sum_probs=203.4
Q ss_pred HHHHHcCChHHHHHHHccCCC--CCH-HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 043370 14 HMYMKSGSLVEGEKVIRLMPI--RNV-IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQ 90 (430)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 90 (430)
-...+.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.... -+........+...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 345689999999999998864 332 12338888889999999999999998721 12334444445667888899999
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043370 91 GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS--DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 91 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 168 (430)
|.++++++++..+. +..++..++..|.+.++.++|++.++.+.+. +...+-.++..+...++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99999999988654 6788888899999999999999999998754 43444333333333566667999999998863
Q ss_pred CCCCHHHHHHHHHHhhhcCcHHHHH------------------------------------------------HHHHHHh
Q 043370 169 FEANDVTFVSLLYACSHCGLKEKGM------------------------------------------------EFFDLMV 200 (430)
Q Consensus 169 ~~p~~~t~~~ll~a~~~~g~~~~a~------------------------------------------------~~~~~~~ 200 (430)
+-+...+..+..+..+.|....|. .-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 334555555556665555433333 3333333
Q ss_pred hhcCCccCH-hHH----HHHHHHHhhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 201 KKYRRKPRL-EHY----TCVVDLLGRCGYLDEAAALIRNMPVKA---NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 201 ~~~~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
...+..|.. ..| .-.+-++...|++.++.+.++.++..+ ...+-.++.++|...+++++|..+++.+..-.|
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 222222321 111 223446678899999999999995322 345667888999999999999999999975442
Q ss_pred ------CCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 273 ------QDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 273 ------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.+......|..+|...+++++|..+++.+.+
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 2333357899999999999999999999986
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-10 Score=103.21 Aligned_cols=296 Identities=11% Similarity=0.069 Sum_probs=209.5
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHH--------------------------------HHHHHHHCC
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWIT--------------------------------LIAGKAQNG 51 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--------------------------------li~~~~~~g 51 (430)
-|++..-...-.+-+.|..+.|.+.|......-+..|.+ +..++-...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 344444445555667788888888876653211111111 123334444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CcHhHHHHHHHHHHhcCCHH-HHHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS--LDVGVISSLISMYSRCGCLD-DSVK 128 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~-~A~~ 128 (430)
+.++++.-.......|++-+...-+....+.-...++++|+.+|+++.+..+- .|..+|..++-.--.+..+. -|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 55666666666666665544444444444445667788888888887776321 14556655443322222221 1222
Q ss_pred HHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC
Q 043370 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR 208 (430)
Q Consensus 129 ~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 208 (430)
+++ +.+--+.|...+.+-|+-.++.++|...|+..++.+ +-....|+.+..-|....+...|.+-++..++- .+.|
T Consensus 322 v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~D 397 (559)
T KOG1155|consen 322 VSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRD 397 (559)
T ss_pred HHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cchh
Confidence 221 222234566667777888899999999999998864 334567888889999999999999999999853 3448
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
-..|-.|.++|.-.+...=|+-.|++. ..+| |...|.+|...|.+.++.++|++.|.+....+-.+...+..|..+|-
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 899999999999999999999999998 6777 78999999999999999999999999999887668899999999999
Q ss_pred hccchhHHHHHHHHHHh
Q 043370 287 SAKRWQGVSEFREAMRE 303 (430)
Q Consensus 287 ~~g~~~~a~~~~~~m~~ 303 (430)
+.++.++|.+.+++-.+
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999887654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-10 Score=114.42 Aligned_cols=261 Identities=9% Similarity=0.019 Sum_probs=189.1
Q ss_pred CCHHHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHH
Q 043370 35 RNVIAWITLIAGKAQN-----GLAEDVLDQYNLMRMVGFRPD-KITFVSVISSCS---------ELATLGQGQQIHAEVV 99 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~---------~~g~~~~a~~~~~~~~ 99 (430)
.+...|...+.+-... +.+++|+++|++..+. .|+ ...|..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4667777777774321 3467999999999876 454 455555554433 2345889999999999
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HH
Q 043370 100 KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-VT 175 (430)
Q Consensus 100 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 175 (430)
+..+. +..++..+...+...|++++|...|++.. +.+...|..+...+...|++++|+..+++..+. .|+. ..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 87644 78889999999999999999999999854 346778899999999999999999999999886 4443 23
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHH
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAI-IWKTLLSACK 252 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~ 252 (430)
+..++..+...|++++|...++++.+. ..| +...+..+..+|...|++++|...++++ +..|+.. .++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566789999999999998754 234 4556778888999999999999999987 4455544 4455555567
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..| +.|...++.+.+..-..+..+..+...|.-.|+-+.+... +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4788888887643221222222366667777777777766 7776654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-13 Score=86.50 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE 84 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 84 (430)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-10 Score=103.24 Aligned_cols=298 Identities=12% Similarity=0.075 Sum_probs=212.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCCC----CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPI----RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
+.+..+++.+|.+.||--..+.|.+++++-.. -+..++|.+|.+-.- ....++..+|....++||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 34667999999999999999999999987653 377889999876442 2337899999999999999999999
Q ss_pred HHHHhccCChHH----HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHhccC------------CCCHhHH
Q 043370 79 ISSCSELATLGQ----GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD-SVKTFLECE------------YSDVVLW 141 (430)
Q Consensus 79 l~~~~~~g~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~------------~~d~~~~ 141 (430)
+++.++.|+++. |.+++.+|++.|++|...+|.-+|..+.+-++..+ |..++.++. ..|...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998766 45788899999999999999999999999888755 333443332 2255666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKE----FEAND---VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTC 214 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 214 (430)
-.-+..|.+..+.+-|.++-.-+.... +.|+. .-|..+..+.++....+.-...|+.|.-. -.-|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHH
Confidence 777777778888888887765543211 34442 34667777888888999999999999876 56678888888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcC-Ch-------------hHHHHHH-------HHHhcC
Q 043370 215 VVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSACKTHK-ST-------------DMAGRIA-------EEILGV 270 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~-~~-------------~~a~~~~-------~~~~~~ 270 (430)
++++..-.|.++-.-+++..+ +-.-+...-.-++..+++.. +. +-|..++ .++...
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 888888888888777777666 21111122222222222222 11 0111111 112222
Q ss_pred CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 271 NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 271 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
+ -.+...+..+-.+.+.|+.++|.+++..+.+.+-
T Consensus 519 ~-~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 519 D-WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred c-CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 2 2456677788888999999999999999965543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-13 Score=85.69 Aligned_cols=50 Identities=30% Similarity=0.538 Sum_probs=47.2
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 136 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-09 Score=97.42 Aligned_cols=275 Identities=13% Similarity=0.119 Sum_probs=174.2
Q ss_pred cCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
.|++..|+++..+-.+ ..+..|-.-+.+--+.|+.+.+-.++.+..+..-.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4667777776655332 2344444455556666777777777776665422344444555555666667777777766
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-----------DVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
.++.+.+.. ++.+......+|.+.|++.....+...+.+. ...+|+.++.=....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 666666533 5666666777777777777777777666532 1235555555555444444444455554
Q ss_pred HHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHH----hCCCCCC
Q 043370 165 EQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIR----NMPVKAN 240 (430)
Q Consensus 165 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~p~ 240 (430)
... .+-++..-.+++.-+...|+.++|.++..+..+. +..|+.. ..-...+-++.+.-.+..+ ..|..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~-- 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED-- 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC--
Confidence 332 3444455556666667777777777777776665 4444411 1111223344333333332 22443
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+..+.+|...|.+++.+.+|...|+..+...| +..+|..+..++.+.|+..+|.+++++-..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47788898899999999999999999999988 889999999999999999999999887653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-10 Score=96.47 Aligned_cols=253 Identities=9% Similarity=0.071 Sum_probs=193.8
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-c--HhHHHHHHHHHHhcCCH
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASL-D--VGVISSLISMYSRCGCL 123 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~ 123 (430)
|.-+.+.++|+++|-+|.+.. +-+..+-.+|.+.+-+.|..+.|+++|+.+.++.--+ + ..+...|..-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 345678999999999999853 3345566788899999999999999999988752111 1 23455688889999999
Q ss_pred HHHHHHHhccCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhhcCcHHHHHHHH
Q 043370 124 DDSVKTFLECEYSD---VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND----VTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 124 ~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
|.|+.+|..+.+.+ ......|+..|-...+|++|++.-+++.+.|-.+.. ..|.-+...+....+++.|..++
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999987633 355667899999999999999999999887655443 34555666666778999999999
Q ss_pred HHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+..+. .+..+..--.+.+.+...|+++.|.+.++.. .-+|+ ..+...|..+|...|+.+++...+.++.+..+
T Consensus 204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~- 280 (389)
T COG2956 204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT- 280 (389)
T ss_pred HHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 998753 2334555567788899999999999999888 33444 45678888999999999999999999998887
Q ss_pred CChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 274 DAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.+..-..|...-....-.+.|.....+-..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 566666666666666666676666554433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-10 Score=96.46 Aligned_cols=299 Identities=12% Similarity=0.102 Sum_probs=224.5
Q ss_pred cCChHHHHHHHccCCCCCHHHH---HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCChH
Q 043370 19 SGSLVEGEKVIRLMPIRNVIAW---ITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK------ITFVSVISSCSELATLG 89 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~ 89 (430)
+++.+.|.++|-.|.+-|..++ -+|...|-+.|..+.|+++-+.+.++ ||. .....|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4678999999999986655554 46778899999999999999998864 432 23445667788899999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH--------hHHHHHHHHHHhcCChHHHHHHH
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDV--------VLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~--------~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
.|+.+|..+.+.|.- -.....-|+..|-+..++++|+++-+++.+.+. ..|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999876532 456777899999999999999999887654332 33455556666678999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043370 162 EQMEQKEFEAND-VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA 239 (430)
Q Consensus 162 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 239 (430)
.+..+.+ |+. ..-..+.......|+++.|.+.++.+.++ +..--..+...|..+|...|+.++...++.++ ...+
T Consensus 204 ~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9998864 333 33334557788999999999999999876 44334577889999999999999999998887 4445
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH---hccchhHHHHHHHHHHhCCCCCCCceeEEE
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA---SAKRWQGVSEFREAMRERNVKKEPGVSWLE 316 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 316 (430)
....-..+-..-....-.+.|...+.+-+...| +...+..|+.... ..|++.+....++.|....++..|.+....
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 555555555554555567888888888888888 7777777777654 445678888889999887777777655554
Q ss_pred ECCEEEEEE
Q 043370 317 IKNQVHQFT 325 (430)
Q Consensus 317 i~~~~~~~~ 325 (430)
.+-..|.|.
T Consensus 360 CGF~a~~l~ 368 (389)
T COG2956 360 CGFTAHTLY 368 (389)
T ss_pred cCCcceeee
Confidence 444444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-10 Score=97.93 Aligned_cols=194 Identities=9% Similarity=0.055 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 35667778888888888888888888887653 34466677777778888888888888888877643 35566667777
Q ss_pred HHHhcCCHHHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH
Q 043370 116 MYSRCGCLDDSVKTFLECEY-----SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE 190 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 190 (430)
.|...|++++|.+.|++... .....+..+...+...|++++|...|++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777776532 123455556666666677777777776666542 223445555566666666666
Q ss_pred HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043370 191 KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRN 234 (430)
Q Consensus 191 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (430)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666543 122344444555555555666666555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-09 Score=99.53 Aligned_cols=262 Identities=15% Similarity=0.114 Sum_probs=196.4
Q ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH-----------------------------HHHHHhc
Q 043370 34 IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVS-----------------------------VISSCSE 84 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----------------------------ll~~~~~ 84 (430)
+.|..-+-.....+-+.|....|.+.|...... .+-.-..|.. +..++-.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 445555555555577788888888888777543 1112222211 2233444
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC------CHhHHHHHHHHHHhcCChHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS------DVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------d~~~~~~li~~~~~~g~~~~A~ 158 (430)
..+.+++.+-.......|++.+...-+-...++-...++|.|+.+|+++.+. |..+|+.++ |.++.+.. +
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk--L 315 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK--L 315 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH--H
Confidence 4566677777777777888877777777777777888999999999998753 567777765 33333221 2
Q ss_pred HHHHHH-HH-CCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 159 NLFEQM-EQ-KEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 159 ~~~~~m-~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.++-+- .. ...+ +.|...+.+.|+-.++.+.|..+|+...+ +.| ....|+.|..-|....+...|.+-++..
T Consensus 316 s~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 222211 11 1233 35777888889999999999999999984 455 4578999999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 236 -PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 236 -~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
.+.| |-..|-.|..+|...+...=|+-.|++...+.|+|+..|.+|..+|.+.++.++|.+.++....-|
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 6666 788999999999999999999999999999999999999999999999999999999999876554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-10 Score=102.92 Aligned_cols=261 Identities=10% Similarity=-0.016 Sum_probs=211.4
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
|++.--....-+-..+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44555555667888999999999999998864 666666766677888888877777777777776 4557888999999
Q ss_pred HHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
-|.-.|+.++|++.|.+... .-...|-....+|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999987553 34578999999999999999999999877654 222333345566678999999999
Q ss_pred HHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCChhHHHH
Q 043370 193 MEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM--P------VKA-NAIIWKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~------~~p-~~~~~~~ll~~~~~~~~~~~a~~ 262 (430)
.++|.+.. ++.| |+...+-+.-..-..+.+.+|...|+.. + ..+ -..+++.|..+|++.+..++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999987 5556 5666777776777789999999998866 1 112 34567888889999999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 263 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
.+++.+.+.|.+..+|.++.-.|...|+++.|...|.+-.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-09 Score=94.24 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=213.0
Q ss_pred HHHHHHHHH--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 41 ITLIAGKAQ--NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 41 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
..+..+..+ .|+|.+|.++..+-.+.+-. ....|.....+.-+.|+.+.+-..+.++.+....++..+.-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 345555443 69999999999998877633 345677788888899999999999999988755678888889999999
Q ss_pred hcCCHHHHHHHHhc---cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhhcCc
Q 043370 119 RCGCLDDSVKTFLE---CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-------VTFVSLLYACSHCGL 188 (430)
Q Consensus 119 ~~g~~~~A~~~~~~---~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~ 188 (430)
..|+++.|..-.++ |...++........+|.+.|++.+...++.+|.+.|.--|+ .++..++.-+...+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999988776 45678899999999999999999999999999999866554 478888888888888
Q ss_pred HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
.+.-...++..... ..-++..-.+++.-+.++|+.++|.+++++. +-.-|... ..+-.+.+-++.+.-++..++-
T Consensus 245 ~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L--~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 245 SEGLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL--CRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred chHHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH--HHHHhhcCCCCchHHHHHHHHH
Confidence 88877788887653 4556677788899999999999999998877 32333331 2223577888889999999999
Q ss_pred hcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 268 LGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 268 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
....|+++..+..|...|.+.+.|.+|...++.-.+.+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999765544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-10 Score=105.21 Aligned_cols=231 Identities=17% Similarity=0.190 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----CC-CCcH-hHHHHHHHHHHhcCCHHHHHHHHhccCC---------
Q 043370 72 KITFVSVISSCSELATLGQGQQIHAEVVKA-----GA-SLDV-GVISSLISMYSRCGCLDDSVKTFLECEY--------- 135 (430)
Q Consensus 72 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 135 (430)
..+...+...|...|+++.|..++++.++. |. .|.. ...+.+...|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456777999999999999999999988764 21 1222 2344577899999999999999987641
Q ss_pred -C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCc
Q 043370 136 -S-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-----KEF-EAND-VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK 206 (430)
Q Consensus 136 -~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 206 (430)
| -..+++.|..+|.+.|++++|..+++...+ .|. .|.. .-++.+...|...+.+++|..+++...+.+.-.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 246788888899999999999888877643 121 2332 346677788999999999999999877654322
Q ss_pred c------CHhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc-
Q 043370 207 P------RLEHYTCVVDLLGRCGYLDEAAALIRNM---------PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILG- 269 (430)
Q Consensus 207 p------~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~- 269 (430)
| -..+++.|...|...|++++|+++++++ +..+ ....++.|..+|.+.++.+.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2 2367999999999999999999999877 1122 244567788889999999999999988752
Q ss_pred ---CCC---CCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 270 ---VNP---QDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 270 ---~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
.+| +...+|..|+.+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334 445688999999999999999999988775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.9e-10 Score=108.95 Aligned_cols=241 Identities=10% Similarity=0.001 Sum_probs=175.5
Q ss_pred CChHHHHHHHccCCC--C-CHHHHHHHHHHHHH---------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043370 20 GSLVEGEKVIRLMPI--R-NVIAWITLIAGKAQ---------NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT 87 (430)
Q Consensus 20 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 87 (430)
+++++|...|++..+ | +...|..+..+|.. .+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 346789999988753 3 45667666655542 345899999999999874 4467788888888889999
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--S-DVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
+++|...++++++.++. +...+..+...|...|++++|...|++..+ | +...+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999998633 677888999999999999999999998653 3 3334444555677789999999999998
Q ss_pred HHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 043370 165 EQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNM----PVK 238 (430)
Q Consensus 165 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 238 (430)
.+.. +|+ ...+..+..++...|+.++|.+.+.++... .|+ ....+.+...|.+.| ++|...++.+ ...
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7753 354 445666777888999999999999987643 343 445566667777777 4777666655 333
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 239 ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
|....+..+ .+.-+|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 433344333 35567777777666 7776544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-08 Score=95.31 Aligned_cols=295 Identities=14% Similarity=0.139 Sum_probs=244.5
Q ss_pred HHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHh
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLM----RMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~ 83 (430)
-|.-+|++..-++.|.+++.+.. ..+...|.+-...--.+|+.+...++.++- ...|+..+...|..=..+|-
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 34556777778888888887665 347788887777777889998888887654 45688889999999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLD--VGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
..|..-.+..+....+..|++.. -.+|+.-.+.|.+.+.++-|+.+|.... ..+...|...+..=-.+|..++-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999988888887642 4678888889999999999999998755 346778888888778899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV 237 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 237 (430)
.+|++.... ++-....+......+...|++..|+.++..+.+. .+-+...|.+-+........++.|..+|.+. ..
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 999999887 4445566666677788899999999999998764 2336788999999999999999999999998 56
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCce
Q 043370 238 KANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGV 312 (430)
Q Consensus 238 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 312 (430)
.|+...|.--+......++.++|.+++++.++..|.-...|..+...+.+.++.+.|...|.. |.++-|.+
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~----G~k~cP~~ 718 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ----GTKKCPNS 718 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh----ccccCCCC
Confidence 689999988888888899999999999999999998889999999999999999999998864 66665544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-08 Score=98.89 Aligned_cols=253 Identities=14% Similarity=0.092 Sum_probs=192.7
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
..|++++|..++.+..+.. +.+...|.+|...|-+.|+.+++...+-.+-... +.|...|..+.+...+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3499999999999999875 6678899999999999999999988775554443 4477999999999999999999999
Q ss_pred HHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-H----HHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 129 TFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-V----TFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 129 ~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~----t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
+|.+..+ ++....---+..|-+.|+...|.+.|.++.+.. +|.. . +--.++..+-..++.+.|.+.++...
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998654 344444445678889999999999999998863 3332 2 22234555666677788888887776
Q ss_pred hhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C-------------------------------------------
Q 043370 201 KKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P------------------------------------------- 236 (430)
Q Consensus 201 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~------------------------------------------- 236 (430)
...+-..+...++.++.+|.+..+++.|...+..+ .
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 65444455666677777777766666665543322 0
Q ss_pred --------------------CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC-CCChhHHHHHHHHHhccchhH
Q 043370 237 --------------------VKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP-QDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 237 --------------------~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~ 293 (430)
+.| ++..|.-+..++...|++.+|..++..+....+ .+...|..++.+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 011 234456677789999999999999999987776 467899999999999999999
Q ss_pred HHHHHHHHHhC
Q 043370 294 VSEFREAMRER 304 (430)
Q Consensus 294 a~~~~~~m~~~ 304 (430)
|.+.+++....
T Consensus 468 A~e~y~kvl~~ 478 (895)
T KOG2076|consen 468 AIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHhc
Confidence 99999988653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-09 Score=102.79 Aligned_cols=312 Identities=13% Similarity=0.111 Sum_probs=234.1
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCCC------HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH--HHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRN------VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK--ITF 75 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 75 (430)
.|+.+.+.|.+.|.-.|+++.++.+.+.+...+ ..+|-.+.++|-..|++++|...|.+..+. .||. ..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 467888899999999999999988887765322 346778999999999999999999888765 4444 445
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----CHHHHHHHHhccCC---CCHhHHHHHHHHH
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG----CLDDSVKTFLECEY---SDVVLWSSMIAAY 148 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~---~d~~~~~~li~~~ 148 (430)
..+...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+... .|...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 567888899999999999999998874 457888888888898876 56677777766553 3677787776666
Q ss_pred HhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC--CccCH------hHHHHHH
Q 043370 149 GFHGKGEEAINLFEQM----EQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR--RKPRL------EHYTCVV 216 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li 216 (430)
-.. +...++..|... ...+-.+.....|.+.......|+++.|...|........ ..++. .+--.+.
T Consensus 425 e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 654 444457777654 3455557778899999999999999999999998865311 11222 2233456
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHH
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 294 (430)
.++-..++.+.|.+.+..+ ...|+ ...|-.+.......++..+|...++.+...+..++..+..+.+.|.....|.-|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 6667778999999999988 44565 344555655566678899999999999999988999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCceeEEEECC
Q 043370 295 SEFREAMRERNVKKEPGVSWLEIKN 319 (430)
Q Consensus 295 ~~~~~~m~~~g~~~~~~~~~~~i~~ 319 (430)
.+-|....+.-...+..++.+.+++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhH
Confidence 9977777655444433344454444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=94.78 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=137.3
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 043370 41 ITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120 (430)
Q Consensus 41 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 120 (430)
+.|.++|.+.|-+.+|.+-|+.-++. .|-+.||..|-.+|.+..+.+.|..++.+-++. ++-|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45556666666666666666655554 455555666666666666666666666655554 233444444455555555
Q ss_pred CCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 121 GCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 121 g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
++.++|.++|+...+ .++.+...+..+|.-.++++-|+..|+++++.|+. +...|+.+.-.|.-.+++|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555555432 23444444444555555555555555555555532 44445555555555555555444444
Q ss_pred HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 198 LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 198 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
..... ..+.++ -..+|-.+-......|++..|.+.|+-.+..+|++..+
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 43321 111111 23345555555677888999999999988888888999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
++.|.-.-.+.|++++|..++......
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999998877654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-08 Score=93.73 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=122.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV 216 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 216 (430)
+..+|..-...+.-.+++++|..=|++.+... +-+...|..+..+..+.+.++++...|++..++ ++.-+++|+-..
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fA 469 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFA 469 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHH
Confidence 33444444444455566777777777766642 224556777777777889999999999999875 555678999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKAN---------AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
..+...+++++|.+.|+.. ...|+ +.+-.+++-. .=.+++..|..++++..+++|....+|..|...-.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFEL 548 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 9999999999999999876 33333 2222333322 22389999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHH
Q 043370 287 SAKRWQGVSEFREAMR 302 (430)
Q Consensus 287 ~~g~~~~a~~~~~~m~ 302 (430)
..|+.++|.++|++-.
T Consensus 549 Q~~~i~eAielFEksa 564 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 9999999999998753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.8e-08 Score=90.42 Aligned_cols=271 Identities=10% Similarity=0.037 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
-.+|+.-...|.+.+.++-|..+|...++- ++.+...|..+...=-..|..+.-..++++++..- +-....|-....-
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Confidence 357888888888899999999999988875 35566778777777777889999999999998873 3355666667777
Q ss_pred HHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
+-..|++..|+.++...- ..+...|-+-+..-..+..+++|..+|.+... ..|+...|.--+..-.-.++.++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 888899999999988754 34678899999999999999999999999876 4678877777777777789999999
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
+++++..+.| +.-...|..+.+.+.+.++++.|.+.|..- ..-| ....|-.|...--+.|++-.|..++++..-.+
T Consensus 672 rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 9999998753 333467889999999999999999988765 4456 46788888888888999999999999999999
Q ss_pred CCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEE
Q 043370 272 PQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWL 315 (430)
Q Consensus 272 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (430)
|.+...|...+++-.+.|+.+.|..+..+..+.- |..+.-|.
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 9999999999999999999999998876655432 55555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=94.30 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=163.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 043370 104 SLDVGVISSLISMYSRCGCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV-SLL 180 (430)
Q Consensus 104 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll 180 (430)
..|-.--+-+..+|.+.|.+.+|.+.|+.-. .+-+.||-.|-..|.+..++..|+.+|.+-.+. -|-.+||. ...
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3344455778999999999999999998754 567889999999999999999999999998775 56667764 455
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCh
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSACKTHKST 257 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~ 257 (430)
..+-..++.++|.++++...+.+ +.+++...++...|.-.++.+-|+.+++++ +.. ++..|+.+.-+|.-.+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 67778899999999999998752 346788888999999999999999999876 655 788888888889999999
Q ss_pred hHHHHHHHHHhcCC--C-CCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 258 DMAGRIAEEILGVN--P-QDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 258 ~~a~~~~~~~~~~~--p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+.++..|++.+..- | .-...|..|.......|++.-|.+.|+.-...+
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999999997543 3 246689999999999999999999998765544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-09 Score=93.79 Aligned_cols=209 Identities=8% Similarity=-0.022 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHcC-CCC--cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAG-ASL--DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555555321 111 23445566666666666666666666543 33556666666666666777777776
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 043370 161 FEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PV 237 (430)
Q Consensus 161 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 237 (430)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.+. ..
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 6666653 333 455556666666666777776666666543 333221111122233455666666666443 11
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-------cCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 238 KANAIIWKTLLSACKTHKSTDMAGRIAEEIL-------GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 238 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.|+. |..- ......|+...+ ..++.+. ++.|....+|..+...+...|++++|...|++..+.
T Consensus 196 ~~~~--~~~~-~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 DKEQ--WGWN-IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred Cccc--cHHH-HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2222 2211 112223444333 2333332 223334456666777777777777777777666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-08 Score=89.34 Aligned_cols=220 Identities=12% Similarity=-0.002 Sum_probs=158.2
Q ss_pred CCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVG-FRPD--KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS 126 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 126 (430)
.+..+.++.-+.+++... +.|+ ...|..+...+...|+.++|...|++.++..+ .+..+|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 356778888888888643 2232 34577778888899999999999999998754 3789999999999999999999
Q ss_pred HHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc
Q 043370 127 VKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 127 ~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 203 (430)
...|+... +.+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 99999864 346788888999999999999999999999885 454432222222344567899999999776542
Q ss_pred CCccCHhHHHHHHHHHhhcCCHHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 204 RRKPRLEHYTCVVDLLGRCGYLDE--AAALIRNM-PVK----A-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 204 ~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~~----p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
..|+... ..++..+ .|++.+ +.+.+.+. ... | ....|..+...+...|+.++|...|++..+.+|++.
T Consensus 195 -~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3333322 2333333 444433 33333221 111 2 245788899999999999999999999999997554
Q ss_pred hh
Q 043370 276 AP 277 (430)
Q Consensus 276 ~~ 277 (430)
.-
T Consensus 271 ~e 272 (296)
T PRK11189 271 VE 272 (296)
T ss_pred HH
Confidence 33
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-08 Score=96.14 Aligned_cols=230 Identities=13% Similarity=0.128 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHc-----CCC--
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMV-----G-FRPDKITF-VSVISSCSELATLGQGQQIHAEVVKA-----GAS-- 104 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~~-- 104 (430)
+...+...|...|+++.|..++...++. | ..|...+. +.+...|...+++++|..+|+.++.. |-.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444888999999999999999988764 2 13444443 34777888999999999999988653 211
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccC----------CCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC
Q 043370 105 LDVGVISSLISMYSRCGCLDDSVKTFLECE----------YSDV-VLWSSMIAAYGFHGKGEEAINLFEQMEQK---EFE 170 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 170 (430)
.-..+++.|..+|.+.|++++|...++... .+++ ...+.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 124567778888999999999988877642 1233 34566777888899999999999876542 122
Q ss_pred CC----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc-----CCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-----
Q 043370 171 AN----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY-----RRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM----- 235 (430)
Q Consensus 171 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 235 (430)
++ ..+++.|...|...|++++|.++|++++... +..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3678999999999999999999999987642 1122 2456788999999999999999998876
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 236 ---PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 236 ---~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+..|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23354 4679999999999999999999999886
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-08 Score=90.31 Aligned_cols=255 Identities=11% Similarity=0.066 Sum_probs=186.9
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVS--VISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
..|.++|+++.|+++++-..+..-+.-...-+. ++.-+..-.++..|.+.-+..+... .-|....+.-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 347889999999999988876542222222222 2222222346777777766665432 2234444444444556799
Q ss_pred HHHHHHHHhccCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 123 LDDSVKTFLECEYSDVVLWSSM---IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 123 ~~~A~~~~~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
+++|...|.+....|...-.+| .-.+-..|+.++|++.|-++... +.-+...+..+.+.|....+..+|.+++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999887776544333 33567789999999999988654 3446777888889999999999999999888
Q ss_pred hhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 200 VKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 200 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
.. -++.|+....-|.+.|-+.|+-..|++..-+- ..-| |..+...|..-|....-.+.++.+|++..-+.| +..-
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~k 661 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSK 661 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHH
Confidence 63 35557889999999999999999999875444 3333 666777777778888899999999999988889 7777
Q ss_pred HHHHHH-HHHhccchhHHHHHHHHHHhC
Q 043370 278 YVLLSN-IHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 278 ~~~l~~-~~~~~g~~~~a~~~~~~m~~~ 304 (430)
|..++. ++.+.|++..|..+++...++
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 776655 557899999999999998754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-08 Score=90.60 Aligned_cols=276 Identities=10% Similarity=0.022 Sum_probs=214.1
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
++.++.+.-.-.+-+...+++.+..++++..-+ .+...+..-|..+...|+..+-.-+=.+|.+. .+-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345566666677778889999999999987764 34556667788899999999988888888876 35567899999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CC-CHhHHHHHHHHHHhcCC
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YS-DVVLWSSMIAAYGFHGK 153 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-d~~~~~~li~~~~~~g~ 153 (430)
.--|...|...+|++.|.+....... -...|-.+...|+-.|.-|.|...+.... .. -+..| +.--|.+.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNN 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhcc
Confidence 98888899999999999988765422 45689999999999999999988876532 11 22223 3446788899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc-CC---c-cCHhHHHHHHHHHhhcCCHHHH
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY-RR---K-PRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~A 228 (430)
.+.|.+.|.+.... .+-|+...+-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999988765 24466777777766777889999999999876210 01 1 1445788999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 229 AALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 229 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
...++.. ...| |..++.++.-.|...|+++.|...|.+.+.+.|+|..+-..|.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999987 3334 7888888888899999999999999999999996655444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-08 Score=86.96 Aligned_cols=267 Identities=9% Similarity=0.045 Sum_probs=163.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHH---HHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITL---IAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
|+-...++.+.|...|+.++|...|++...-|+.+-..| .-.+.+.|+.++.-.+...+.... .-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 344455566666666666666666665443322221111 112335555555555555554321 1223333333444
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--C-CCHhHHHHHHHHHHhcCChHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE--Y-SDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
....++++.|..+-++.++.... +...+-.-.......|+.++|.-.|.... . -+..+|.-|+.+|...|+..||.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 44556666666666666654322 45555555666777788888888787643 3 47778888888888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHhhh-cCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 159 NLFEQMEQKEFEANDVTFVSLL-YACSH-CGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
-+-+...+. ++.+..+.+.+. ..|.- ...-++|..++++.. .+.|+- ..-+.+...+.+.|..+++..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 777665544 344555555442 23322 223466777777665 345653 45566777777888888888888776
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 236 -PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 236 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
...||....+.|...+...+.+++|...|...+.++|++..+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 556788888888888888888888888888888888866443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=93.50 Aligned_cols=293 Identities=12% Similarity=0.077 Sum_probs=163.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--C-C-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPI--R-N-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE 84 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 84 (430)
|-.+..+|-..|+++.|...|-.... + + +..+--|...|.+.|+.+.+...|+...+.. +-+..|...+...|+.
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHh
Confidence 44566666666666666666654332 1 1 2333445555666666666666666665541 3334444444444444
Q ss_pred cC----ChHHHHHHHHHHHHc-------------------------------------CCCCcHhHHHHHHHHHHhcCCH
Q 043370 85 LA----TLGQGQQIHAEVVKA-------------------------------------GASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 85 ~g----~~~~a~~~~~~~~~~-------------------------------------g~~~~~~~~~~li~~~~~~g~~ 123 (430)
.+ ..+.|..+.....+. +-++.+.+.|.+...+...|++
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 32 233333333333332 3334455555566666666666
Q ss_pred HHHHHHHhccCC-------CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcH
Q 043370 124 DDSVKTFLECEY-------SDV------VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLK 189 (430)
Q Consensus 124 ~~A~~~~~~~~~-------~d~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 189 (430)
++|...|+.... +|. .+-..+...+-..++.+.|.+.|....+. .|.-+ .|..++......+..
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~ 546 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNL 546 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCc
Confidence 666666654321 111 11122333444445566666666665553 33322 233333222234556
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh------------
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKANAIIWKTLLSACKT------------ 253 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------------ 253 (430)
.+|...+..... ....++..++.+...+.+...+..|.+-|+.+ ...+|..+.-+|.+-|..
T Consensus 547 ~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 547 YEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred HHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 666666666654 23344455555666666666666666644444 223555555555554432
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
.+..+.|+++|.+++..+|.|..+-+.+.-.++..|++.+|..+|.+.++...
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 34467888888998999998888888888999999999999999999988765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-07 Score=82.16 Aligned_cols=293 Identities=9% Similarity=0.080 Sum_probs=185.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
|-..+.|=-..|++..|.++|++-. +|+...|++.|.-=.+-...+.|..++++..- +.|+..+|.-....=.+.|
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcC
Confidence 3334444445566666666665432 45666666666655555666666666655543 2455555555555555555
Q ss_pred ChHHHHHHHHHHHHc-CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhc----cC--------------------------
Q 043370 87 TLGQGQQIHAEVVKA-GA-SLDVGVISSLISMYSRCGCLDDSVKTFLE----CE-------------------------- 134 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~-------------------------- 134 (430)
....+.++|..+++. |- .-+...+.+....=.++..++.|.-+|+- ++
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 555555555555432 10 01122333333333344444444433321 11
Q ss_pred --------------C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHh---hhcC
Q 043370 135 --------------Y---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-------VTFVSLLYAC---SHCG 187 (430)
Q Consensus 135 --------------~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g 187 (430)
. -|-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=.+| ....
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 14456766777777789999999999998876 56633 2333333333 2467
Q ss_pred cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043370 188 LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLL----GRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 262 (430)
+++.+.++|+..++ -++-...|+.-+--+| .++-++..|.+++... |.-|-..++...|..-.+.++++....
T Consensus 381 d~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 381 DVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 88888899888875 2333445555544444 4678888898888766 888888888888888888899999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 263 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
++++.++..|.|..+|......-...|+++.|..+|........
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 99999999998888888888888888999999998887765543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-07 Score=91.02 Aligned_cols=253 Identities=11% Similarity=0.028 Sum_probs=143.9
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----C
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKIT-FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC-----G 121 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g 121 (430)
...|++++|++.+.+-... -+|..+ .......+.++|+.++|..++..+++.++. |..-|..|..+..-. .
T Consensus 15 ~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccc
Confidence 4455555555555443322 223222 333444455555555555555555555422 333333333333111 1
Q ss_pred CHHHHHHHHhccCCC--CHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHH
Q 043370 122 CLDDSVKTFLECEYS--DVVLWSSMIAAYGFHGKG-EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 122 ~~~~A~~~~~~~~~~--d~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 198 (430)
+.+...++|+++... ...+...+.-.+.....+ ..+...+..+...|+++ +|+.|-..|......+-..+++..
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHH
Confidence 334444445444311 111111111111111112 24445556666777543 455555556655555555555555
Q ss_pred Hhhhc-------------CCccCHh--HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 043370 199 MVKKY-------------RRKPRLE--HYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 199 ~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~ 261 (430)
..... .-+|+.. ++.-+...|-..|++++|++++++. ...|+ +..|..-...+...|+++.|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 43221 1134442 4455677888899999999999876 55665 556777777788999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 262 RIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
..++....+++.|-..-+-.+..+.+.|++++|.++.....+.+.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999987777777778888899999999999988877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-07 Score=86.40 Aligned_cols=286 Identities=14% Similarity=0.055 Sum_probs=192.6
Q ss_pred HHHHHHHcCChHHHHHHHccCC--CCC-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMP--IRN-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELAT 87 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~ 87 (430)
..+-|.+.|++++|++.+.+.. .|| ++-|.....+|...|+++++.+---+.++. .|+- -.+.--.+++-.+|+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhcc
Confidence 4455677888888888887764 455 677888888888888888888877777663 5553 345556677777888
Q ss_pred hHHHHHH------HH------------H-------------HHHcC--CCCcHhHHHHHHHHHH---------hcC----
Q 043370 88 LGQGQQI------HA------------E-------------VVKAG--ASLDVGVISSLISMYS---------RCG---- 121 (430)
Q Consensus 88 ~~~a~~~------~~------------~-------------~~~~g--~~~~~~~~~~li~~~~---------~~g---- 121 (430)
+++|..= ++ + +.+.+ +-|......+....+- +..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 8776521 10 0 00011 1122222122111110 000
Q ss_pred ---------------CHHHHHHHHhccC-------CC---CH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043370 122 ---------------CLDDSVKTFLECE-------YS---DV------VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170 (430)
Q Consensus 122 ---------------~~~~A~~~~~~~~-------~~---d~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 170 (430)
.+..|...+.+-. .. |. .+.+.-..-+.-.|+.-.|..-|+..+.....
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 1111111111100 00 11 11111112234468888999999998887544
Q ss_pred CCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043370 171 ANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTL 247 (430)
Q Consensus 171 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 247 (430)
++. .|.-+..+|....+.++.++.|....+ +.| +..+|..-.+++.-.+++++|..=|++. .+.| +...|-.+
T Consensus 359 ~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 359 FNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 333 277777889999999999999999874 444 6678888888888899999999999987 6677 56677777
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
--+.-+.++++++...|++..+..|..+..|+....++...+++++|.+.++.-.+
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 77777788999999999999999999999999999999999999999999998765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-08 Score=81.43 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHH
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLL 219 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 219 (430)
...+.-+|.+.|+...|.+-+++.++.. +-+.-++..+...|.+.|..+.|.+.|++..+ +.| +..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3445567777888888888888777753 33455677777777788888888888887764 344 456677777777
Q ss_pred hhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 220 GRCGYLDEAAALIRNMPVKA----NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
|..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.+.....|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888887762222 24567777767777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCC
Q 043370 296 EFREAMRERNV 306 (430)
Q Consensus 296 ~~~~~m~~~g~ 306 (430)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 88887776654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=98.93 Aligned_cols=249 Identities=14% Similarity=0.087 Sum_probs=146.9
Q ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 34 IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
.||-+||..+|.-|+..|+.+.|- +|.-|.-..++.+...|+.++.+....++.+.+. .|-..+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 456677777777777777777766 6766666666666677777777766666665554 4566677777
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-KEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
...|...||+.. |+...+ -.-.++..+..+|-......++..+.- -+.-||..+. +.-....|.++.+
T Consensus 90 l~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~eglwaql 158 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGLWAQL 158 (1088)
T ss_pred HHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHHHHHH
Confidence 777777777655 322221 222344556666666666666555332 2244555432 2223345556666
Q ss_pred HHHHHHHhhhcCCccCHhHHHHHHHHH-hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 193 MEFFDLMVKKYRRKPRLEHYTCVVDLL-GRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
.+++..+.......|... +++-. .-...+++-..........|+..++.+++..-...|+.+.|..++.+|.+.+
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 665544432111111111 11111 1112233333333333225778888888888888888888888888887655
Q ss_pred -CCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCce
Q 043370 272 -PQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGV 312 (430)
Q Consensus 272 -p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 312 (430)
|-++..|..|+-+ .++..-++.+++.|.+.|+.|...+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 6566666666555 6777777778888888888777654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=92.68 Aligned_cols=215 Identities=12% Similarity=0.117 Sum_probs=176.1
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+.+.|++.+|.-.|+..++..+. +...|.-|....+..++-..|+..+.+..+ .+....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35778899999999999888654 889999999999999999999999987653 46677788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 159 NLFEQMEQKEFEANDVTFVSLL-----------YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
++|++-++.. |. |..+. ........+....++|-.+....+..+|.....+|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999876542 11 00010 12233344556667777777665666788889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 228 AAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 228 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
|.+.|+.. .++| |..+||.|...++...+.++|+..|++++++.|.-..+...|.-.|...|.+++|.+.|-...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999988 7778 678899999999999999999999999999999989999999999999999999998876543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-06 Score=75.59 Aligned_cols=179 Identities=12% Similarity=0.022 Sum_probs=88.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH-HHHh-hcC
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV-DLLG-RCG 223 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g 223 (430)
..+...|+.++|.-.|+..+... +-+...|..|+..|...|.+.+|...-....+. .+.+..+.+.+. ..+. ...
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCch
Confidence 34445555555555555554421 123445555555555555555555444443332 122233332221 1111 111
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 224 YLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 224 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
--++|.+++++. ..+|+ ....+.+...|...|..+++..++++.+...| |....+.|.+.+...+.+.+|.+.|...
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 224455555544 44443 22334444445556666666666666655555 5555666666666666666665555543
Q ss_pred HhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCC
Q 043370 302 RERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTG 358 (430)
Q Consensus 302 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~ 358 (430)
. ...|+.+.....++.+.++|+ .||..
T Consensus 498 L--------------------------r~dP~~~~sl~Gl~~lEK~~~----~~DAT 524 (564)
T KOG1174|consen 498 L--------------------------RQDPKSKRTLRGLRLLEKSDD----ESDAT 524 (564)
T ss_pred H--------------------------hcCccchHHHHHHHHHHhccC----CCCcc
Confidence 2 345666666655655555554 55543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=90.00 Aligned_cols=244 Identities=12% Similarity=0.065 Sum_probs=120.8
Q ss_pred HcCChHHHHHHHcc--CCC-CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 043370 18 KSGSLVEGEKVIRL--MPI-RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQI 94 (430)
Q Consensus 18 ~~g~~~~A~~~f~~--m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 94 (430)
=.|++..++.-.+. ... .+.....-+.+++...|+++.++ .+..... .|.......+...+....+-+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 35667766644431 111 12334455667777777766543 3333332 55655555555544433344444433
Q ss_pred HHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043370 95 HAEVVKAGAS-LDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173 (430)
Q Consensus 95 ~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 173 (430)
++........ .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. . +.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD 163 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-ED 163 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-Cc
Confidence 3333222222 23333333445566677777777777655 34555556667777777777777777777653 2 23
Q ss_pred HHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043370 174 VTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTL 247 (430)
Q Consensus 174 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 247 (430)
.+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+.-+....|++++|.+++++. ...| +..+...+
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 334444444322 22456666666666543 3345555555555566666666666655553 2222 33344444
Q ss_pred HHHHHhcCCh-hHHHHHHHHHhcCCC
Q 043370 248 LSACKTHKST-DMAGRIAEEILGVNP 272 (430)
Q Consensus 248 l~~~~~~~~~-~~a~~~~~~~~~~~p 272 (430)
+......|+. +.+.+++.++....|
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 4444444544 444555555555555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-08 Score=87.46 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=163.6
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 124 (430)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33455788888886665 322221223445566778888888876543 3443333 566666655555554445666
Q ss_pred HHHHHHhccC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 125 DSVKTFLECE-YS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 125 ~A~~~~~~~~-~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
.+..-+++.. .+ +....-.....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665433 22 2222222234566679999999998652 35566667788999999999999999999
Q ss_pred hhhcCCccCHhHHHHHHH----HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 200 VKKYRRKPRLEHYTCVVD----LLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 200 ~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+ +..|. +...+.. .+.-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|..++++..+.+|.
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 64 34443 3333333 333345799999999999 44578888899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhccch-hHHHHHHHHHHhC
Q 043370 274 DAAPYVLLSNIHASAKRW-QGVSEFREAMRER 304 (430)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 304 (430)
++.+...++-+....|+. +.+.+.+.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 6677888887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-06 Score=83.59 Aligned_cols=284 Identities=13% Similarity=0.065 Sum_probs=189.1
Q ss_pred HHHHHHcCChHHHHHHHccCCC--CCHH-HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-c----
Q 043370 13 AHMYMKSGSLVEGEKVIRLMPI--RNVI-AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS-E---- 84 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~---- 84 (430)
...+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+++.+ ||...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4567889999999999987553 3544 45566788999999999999999999974 56666555444443 1
Q ss_pred -cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH-HHHHHHhccCCCCH-hHHHHHHHHHHhcCChHHHHHHH
Q 043370 85 -LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD-DSVKTFLECEYSDV-VLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 85 -~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
..+.+...++++.+.+.-+ .......+.-.+..-..+. .+...+..+..+.+ .+++.+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 2256777888888766532 2222222211122111222 23333333444444 45666666666555555555666
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCC
Q 043370 162 EQMEQK----E----------FEAND--VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGY 224 (430)
Q Consensus 162 ~~m~~~----g----------~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 224 (430)
...... + -+|.. .++..+...|...|+.++|.++++..++. .|+ +..|..-...|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCC
Confidence 655432 1 12343 24455566688999999999999998853 565 6889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC--CC-CC----hhH--HHHHHHHHhccchhH
Q 043370 225 LDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN--PQ-DA----APY--VLLSNIHASAKRWQG 293 (430)
Q Consensus 225 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~----~~~--~~l~~~~~~~g~~~~ 293 (430)
+++|.+.++.. ...+ |-.+-+-....+.+.|++++|...+....+.+ |. |. ..| .-.+.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999887 3443 55555566667889999999999999886544 32 11 123 345788999999999
Q ss_pred HHHHHHHHHh
Q 043370 294 VSEFREAMRE 303 (430)
Q Consensus 294 a~~~~~~m~~ 303 (430)
|.+.+..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9887766644
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-07 Score=75.16 Aligned_cols=187 Identities=9% Similarity=0.030 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
....|.-+|.+.|++..|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+..++.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 44455666777777777777777777654 334566666677777777777777777777665433 5566666666666
Q ss_pred hcCCHHHHHHHHhccC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 119 RCGCLDDSVKTFLECE-YS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~-~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
..|++++|...|+... .| -..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 6666666666666533 22 23455555555566666666666666665542 222344555555555556666666
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
.+++..... ..++....-..|..-.+.|+-+.|.+
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHH
Confidence 665555443 22444444444444444444444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-09 Score=63.69 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.7
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCC
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP 33 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 33 (430)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788999999999999999999999999998885
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-06 Score=79.27 Aligned_cols=300 Identities=10% Similarity=-0.023 Sum_probs=186.4
Q ss_pred Cch-hHHHHHHHHHHHcCChHHHHHHHccCC---CC--CH-HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043370 4 LDL-VAGSSLAHMYMKSGSLVEGEKVIRLMP---IR--NV-IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV 76 (430)
Q Consensus 4 ~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~---~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 76 (430)
||- ..|..+...+...|+.+.|.+.+.... .+ +. .........+...|++++|.+.+++..+.. +.|...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 443 346666677777888888766665532 12 22 122233445678899999999999998763 33444444
Q ss_pred H---HHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHh
Q 043370 77 S---VISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGF 150 (430)
Q Consensus 77 ~---ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~ 150 (430)
. ........+..+.+.+.+... ....+.+......+...+...|++++|...+++.. +.+...+..+...|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 2 111112234555555555441 11122234455667788999999999999999865 3467788889999999
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH-H--HHHHHHhhcCC
Q 043370 151 HGKGEEAINLFEQMEQKEF-EAND--VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY-T--CVVDLLGRCGY 224 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~ 224 (430)
.|++++|...+++...... .|+. ..+..+...+...|+.++|..++++........+..... + .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999877532 2332 235567788899999999999999985431111222111 1 33333444453
Q ss_pred HHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC-C--------CCChhHHHHHHHHHhc
Q 043370 225 LDEAAAL---IRNM----PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN-P--------QDAAPYVLLSNIHASA 288 (430)
Q Consensus 225 ~~~A~~~---~~~m----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~ 288 (430)
.+.+.++ .... +.............++...|+.+.|..+++.+.... . ..........-++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333222 1111 111111222345556788999999999999886322 1 1234445566677899
Q ss_pred cchhHHHHHHHHHHhCC
Q 043370 289 KRWQGVSEFREAMRERN 305 (430)
Q Consensus 289 g~~~~a~~~~~~m~~~g 305 (430)
|++++|.+.+......+
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-06 Score=81.90 Aligned_cols=299 Identities=13% Similarity=0.096 Sum_probs=191.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP-DKITFVSV 78 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 78 (430)
.-|..+|-.|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.| |...+...
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 34677888898999999999999999987653 345678888888888888888888887765432223 33334333
Q ss_pred HHHHh-ccCChHHHHHHHHHHHH--------------------------------------------------cCCCCcH
Q 043370 79 ISSCS-ELATLGQGQQIHAEVVK--------------------------------------------------AGASLDV 107 (430)
Q Consensus 79 l~~~~-~~g~~~~a~~~~~~~~~--------------------------------------------------~g~~~~~ 107 (430)
-..|. +.+.++++..+-.+++. .+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 33443 34445555544444433 1111 22
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC-------------
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLEC----EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK-EF------------- 169 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~------------- 169 (430)
.+..-+.--|+..++++.|.+...+. ...++..|..+.-.+...+++.+|+.+.+..... |.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 22222344456666777776666543 2346677777777777777777777666544321 10
Q ss_pred -----------------------------------------C--------------------------------------
Q 043370 170 -----------------------------------------E-------------------------------------- 170 (430)
Q Consensus 170 -----------------------------------------~-------------------------------------- 170 (430)
.
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 0
Q ss_pred ---CC------HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043370 171 ---AN------DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN 240 (430)
Q Consensus 171 ---p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 240 (430)
|+ ...+......+.+.+..++|...+.+..+. .+.....|......+...|++++|.+.|... -+.|+
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 00 001111222233334444444444444321 1123344555556667778888888887766 66774
Q ss_pred -HHHHHHHHHHHHhcCChhHHHH--HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 241 -AIIWKTLLSACKTHKSTDMAGR--IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 241 -~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+.+..++...+...|+...|.. ++..+.+++|.++..|..|...+.+.|+.++|.+.|..-.+-
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6678888888999999999988 999999999999999999999999999999999999987653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-05 Score=73.31 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHH--
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG-FRPDKITF-VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVIS-- 111 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-- 111 (430)
....|..+...+...|+.+++...+.+..+.. ..++.... ......+...|++++|..++++..+..+ .|...+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHh
Confidence 34567777788888899999877777766542 12233222 2223345678999999999999988743 3544444
Q ss_pred -HHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 112 -SLISMYSRCGCLDDSVKTFLECEYS---DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 112 -~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
.+.......|..+.+.+.++..... .......+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222223356666677776653322 23444556678889999999999999999864 445667788888999999
Q ss_pred cHHHHHHHHHHHhhhcCCccCH--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHH-H-H--HHHHHHHhcCChh
Q 043370 188 LKEKGMEFFDLMVKKYRRKPRL--EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA--NAII-W-K--TLLSACKTHKSTD 258 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~~~~-~-~--~ll~~~~~~~~~~ 258 (430)
++++|..++++........|+. ..|..+...+...|++++|..++++. ...| .... . + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999987642222333 34567888999999999999999986 2223 2111 1 1 2333344555444
Q ss_pred HHHHH---HHHHhcCCCC--CChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 259 MAGRI---AEEILGVNPQ--DAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 259 ~a~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
.+.+. ........|. ..........++...|+.++|...++.+....
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44443 2221111121 22233357778889999999999999987643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-05 Score=70.24 Aligned_cols=289 Identities=12% Similarity=0.087 Sum_probs=210.7
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHH---HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccC
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLI---AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV-SVISSCSELA 86 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g 86 (430)
-|...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|.+.++. +||-..-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3556667788999999999988888888888775 4689999999999999998874 78854422 2345567899
Q ss_pred ChHHHHHHHHHHHHcCCCCc--HhH------------HHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLD--VGV------------ISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYG 149 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~ 149 (430)
.+++|..-|+.+++.....+ ..+ ....+..+...|+...|+.....+. .-|+..|..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 99999999999988754211 111 1223444566788888888887654 347778888888999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhH----HHHH---HH-----
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEH----YTCV---VD----- 217 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---i~----- 217 (430)
..|++..|+.=++..-+.. ..+..++.-+-..+...|+.+.++...++-. .+.||-.. |-.| +.
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998887776543 3455666667777788888888887777765 45666432 2111 11
Q ss_pred -HHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccc
Q 043370 218 -LLGRCGYLDEAAALIRNM-PVKANA-----IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKR 290 (430)
Q Consensus 218 -~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 290 (430)
...+.+++.++.+-.+.. ...|.. ..+..+-.++...+++.+|++...++++.+|+|..++.--..+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 123456666666665554 445542 2344555667888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 043370 291 WQGVSEFREAMRERN 305 (430)
Q Consensus 291 ~~~a~~~~~~m~~~g 305 (430)
+++|..-|+...+.+
T Consensus 357 YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 357 YDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-06 Score=73.60 Aligned_cols=283 Identities=9% Similarity=0.025 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHh
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPIR---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVS-VISSCS 83 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~ 83 (430)
-+++.+.-+.+..++++|++++..-.++ +......|..+|-...++..|-..++++-.. .|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3667777788899999999998765543 5667788888999999999999999999764 565555543 244455
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH----HHhcCCHHHHHHHHhccC-CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISM----YSRCGCLDDSVKTFLECE-YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+.+.+..|..+...|... ....+-.+.. -...+++..++.+.++.+ +.+..+.+.......+.|++++|+
T Consensus 90 ~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 667888888888777542 2222222221 234678888888999888 467777777766778899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-------------CH--------hHHHHHHH
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-------------RL--------EHYTCVVD 217 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~--------~~~~~li~ 217 (430)
+-|+...+-|---....|+..+ +..+.++.+.|.++..+++++ |+.. |+ -+-+.++.
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9999887754333456676555 455678999999999998876 4321 11 12334444
Q ss_pred H-------HhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 218 L-------LGRCGYLDEAAALIRNMPV----KANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 218 ~-------~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
+ +.+.|+++.|.+-+..||- ..|++|...+.- .-..+++..+.+-+.-+++++|-.+.||..++-.|+
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3 4578999999999999942 246777655421 223456777788888888999988899999999999
Q ss_pred hccchhHHHHHHHH
Q 043370 287 SAKRWQGVSEFREA 300 (430)
Q Consensus 287 ~~g~~~~a~~~~~~ 300 (430)
+..-++-|..++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 99999999988764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.4e-06 Score=75.24 Aligned_cols=253 Identities=10% Similarity=0.032 Sum_probs=170.3
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
...+++..|.++|++.+.-. ..+...|.--+..=.+...+..|..+++..+.. ++.-...|.-.+.|=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHH
Confidence 34566677888888877644 345556666666667777888888888887765 2333455666666777778888888
Q ss_pred HHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCC
Q 043370 128 KTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRR 205 (430)
Q Consensus 128 ~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 205 (430)
++|+.-. +||...|++.|.-=.+....+.|..+|++..- +.|+..+|.--..-=.+.|.+..+..+|....+..|-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 8888743 67888888888888888888888888888776 4688888877777777788888888888887765443
Q ss_pred cc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHH-----HHHHhcCCC
Q 043370 206 KP-RLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKANAIIWKTLLSACKTHKS---TDMAGRI-----AEEILGVNP 272 (430)
Q Consensus 206 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~---~~~a~~~-----~~~~~~~~p 272 (430)
.- ....+.+...-=.++..++.|.-+|+-. |.......|..+..--.+.|+ +++++-- ++.++..+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 21 1233444444445666777777776543 322224445555444444444 3333322 344456778
Q ss_pred CCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 273 QDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 273 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.|..+|.-.++.-...|+.+...++++.....
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 88888888888888888888888888877643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=89.68 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=167.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEYS--------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
....|-..|......+++++|++++++.... -.-.|.++++.-...|.-+...++|++..+.- -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 5667888899999999999999999886521 24568888888788888889999999998752 1234588
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKANAIIWKTLLSACKT 253 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~ 253 (430)
.|...|.+.+..++|.++++.|.+.++ .....|...++.+.+..+-++|..++.+. |.+-......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999876 56788999999999999999999998876 333345566667777889
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCC
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKK 308 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 308 (430)
+|+.+++..+|+..+.-.|.....|...++.-.+.|+.+.++.+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999998888754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-08 Score=58.64 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=24.5
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 102 GASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 102 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-06 Score=75.41 Aligned_cols=180 Identities=12% Similarity=0.002 Sum_probs=118.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CH---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEY--S-DV---VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND----VT 175 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 175 (430)
....+..+...|.+.|++++|...|+++.. | +. .+|..+..+|.+.|++++|+..|+++.+.. |+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 456677777788888888888888876542 2 22 456777778888888888888888887652 321 13
Q ss_pred HHHHHHHhhhc--------CcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 043370 176 FVSLLYACSHC--------GLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKT 246 (430)
Q Consensus 176 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 246 (430)
+..+..++... |+.++|.+.++.+.+. .|+. ..+..+.... ...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence 44444455443 6677778887777654 2332 2222211110 000000 001123
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+...+...|+++.|...++++.+..|++ +..+..++.++...|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456889999999999999999887643 4688999999999999999999999887543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-05 Score=72.59 Aligned_cols=231 Identities=11% Similarity=0.070 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
+++.+-..+...++.++|+.+..++++. .|+. .+|+.--.++...| +++++...++.+.+...+ +..+|+-....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 4555555566667777777777777764 3433 34554444455555 456777777776665433 45555544444
Q ss_pred HHhcCCH--HHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH
Q 043370 117 YSRCGCL--DDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 117 ~~~~g~~--~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 191 (430)
+.+.|.. +++..+++.+. .++..+|+.....+...|+++++++.++++++.+. -|...|+.....+.+.+...
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~- 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG- 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc-
Confidence 4444442 44455554433 33455566555555566666666666666655542 23333443333322221100
Q ss_pred HHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChhHHHHHHH
Q 043370 192 GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRN-MPVKA-NAIIWKTLLSACKTH----KSTDMAGRIAE 265 (430)
Q Consensus 192 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~----~~~~~a~~~~~ 265 (430)
+ .....+++.+...+ +...| |...|+.+...+... ++..+|...+.
T Consensus 194 ------------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 194 ------------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred ------------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 0 00012334444422 23344 556677666666653 33455777777
Q ss_pred HHhcCCCCCChhHHHHHHHHHhcc------------------chhHHHHHHHHHH
Q 043370 266 EILGVNPQDAAPYVLLSNIHASAK------------------RWQGVSEFREAMR 302 (430)
Q Consensus 266 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 302 (430)
+....+|.++.+...|+..|+... ..++|.++++.+.
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 777777777778888888887632 2356778888773
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-06 Score=80.11 Aligned_cols=246 Identities=11% Similarity=0.059 Sum_probs=182.8
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 043370 46 GKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125 (430)
Q Consensus 46 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 125 (430)
-+.++|+..+|.-.|+...+.+ +-+...|.-|....+..++-..|+..+.+.++..+. |..+.-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3678999999999999998875 557788999998889999999999999999987544 78888899999999999999
Q ss_pred HHHHHhccCCCC-HhHHHHHH---------HHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhhcCcHHHHHH
Q 043370 126 SVKTFLECEYSD-VVLWSSMI---------AAYGFHGKGEEAINLFEQME-QKEFEANDVTFVSLLYACSHCGLKEKGME 194 (430)
Q Consensus 126 A~~~~~~~~~~d-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 194 (430)
|.+.++...... ...|...- ..+..........++|-++. +.+.++|......|.-.|--.|.+++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988752100 00000000 12222233456666666664 44444677777777777888999999999
Q ss_pred HHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 195 FFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 195 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
.|+.++. +.| |...||-|...++...+.++|..-|++. .++|+ +.++..|.-+|...|.+++|...|-.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999984 466 6789999999999999999999999988 77886 4566677778999999999999988887443
Q ss_pred CC----------CChhHHHHHHHHHhccchhHHHH
Q 043370 272 PQ----------DAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 272 p~----------~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
+. +...|..|=.++...++.|-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 31 12456666666666666654443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-05 Score=70.52 Aligned_cols=183 Identities=7% Similarity=-0.056 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH--h
Q 043370 34 IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK---ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDV--G 108 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~ 108 (430)
+.....+..+...+.+.|++++|...|++..... +.+. .++..+..++...|++++|...++.+++....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4567788888889999999999999999988753 2222 46677888888999999999999999876433111 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 109 VISSLISMYSRC--------GCLDDSVKTFLECEY--S-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 109 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
++..+...+.+. |+.++|.+.|+.+.. | +...+.++..... .... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence 455566666654 677778888777642 2 2222221111000 0000 0 00112
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.+...+.+.|+.++|...+....+.+.-.| ....+..+..+|...|++++|...++.+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344556777778887777777776543223 3466777777777788888877777766
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.5e-05 Score=66.73 Aligned_cols=289 Identities=12% Similarity=0.050 Sum_probs=172.6
Q ss_pred HHHHHHHHcCChHHHHHHHccCCC--CCHHHHHH-HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPI--RNVIAWIT-LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT 87 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 87 (430)
+|.++.-..-.+++|++++.++.. |+-...|. |.-+|.+..-++-+.++++-.++. ++-++...+..+....+.=.
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhc
Confidence 344444445568889999988763 44444443 345677888888888888887765 23334444443333333211
Q ss_pred hHHHHHHH--------------HHHHHcCC------------CC-----cHhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 043370 88 LGQGQQIH--------------AEVVKAGA------------SL-----DVGVISSLISMYSRCGCLDDSVKTFLECEYS 136 (430)
Q Consensus 88 ~~~a~~~~--------------~~~~~~g~------------~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 136 (430)
-..|.+-. +.+.+.++ -| =+...-.|+--|.+.+++.+|..+.+++.+.
T Consensus 235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 11122111 12222211 00 1233345666788999999999999998766
Q ss_pred CHhHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC
Q 043370 137 DVVLWSSMIAAYGFHG-------KGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR 208 (430)
Q Consensus 137 d~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 208 (430)
.+.-|-.-.-.++..| +..-|.+.|+-.-+.+..-|.. --.++.+++.-..++|+..-++..+.. +=...|
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD 393 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDD 393 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcc
Confidence 6554433333333333 3455666666554444433322 233455555566778888888888854 333334
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCChhHHHHHHHHHhcCC-CCCC-hhHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVK-ANAIIWKTLLSA-CKTHKSTDMAGRIAEEILGVN-PQDA-APYVLLSN 283 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~ 283 (430)
...+ .+.++++..|.+.+|+++|-.+ +.+ .|..+|.+++.- |...++++.|..++-+ .+ |.+. .....+.+
T Consensus 394 ~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 394 DFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIAN 469 (557)
T ss_pred hhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHH
Confidence 4444 4788899999999999999887 222 366777666554 6777888887665433 33 3222 23345567
Q ss_pred HHHhccchhHHHHHHHHHHhCC
Q 043370 284 IHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g 305 (430)
-|.+++.+--|.+.|+.+...+
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHccC
Confidence 7888888888888888887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.5e-05 Score=67.62 Aligned_cols=209 Identities=10% Similarity=-0.020 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCC---CHHHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPIR---NVIAWITLIAGKAQNG-LAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
+++.+-..+.+.++.++|+.+.+.+... +..+|+..-..+...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4556666777788999999999887632 5567777767777777 6899999999999875 445566776655555
Q ss_pred ccCC--hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhc---CCh-
Q 043370 84 ELAT--LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFH---GKG- 154 (430)
Q Consensus 84 ~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~---g~~- 154 (430)
+.|. .+.+..+.+.+++.... |..+|+-..-.+.+.|+++++++.++++.+ .|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 6665 36778888899887654 889999999999999999999999998764 4778888877666554 222
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc----CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 155 ---EEAINLFEQMEQKEFEANDVTFVSLLYACSHC----GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 155 ---~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
+++++...+++... +-|...|+.+...+... +...+|...+.+..+. -..+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHh
Confidence 46677776766652 44566777777766652 3345577777665532 12355666777777764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.2e-06 Score=69.09 Aligned_cols=118 Identities=12% Similarity=0.153 Sum_probs=85.1
Q ss_pred cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hhHH
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSA-CKTHKS--TDMA 260 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~--~~~a 260 (430)
.++.+++...++...+. -+.+...|..|...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566666666666542 3446777788888888888888888888776 4445 55666666665 356666 4788
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..++++.++.+|.++.++..+...+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888876543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-05 Score=79.04 Aligned_cols=239 Identities=12% Similarity=0.175 Sum_probs=174.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----cHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 60 YNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASL-----DVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 60 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
|+++.... +-....|-.-+.-..+.++.+.|+++.+++++. +.+ -..+|.+++++-..-|.-+...++|++..
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444432 334566777888888889999999999888764 211 23578888888888888888899999876
Q ss_pred C-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH
Q 043370 135 Y-SD-VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY 212 (430)
Q Consensus 135 ~-~d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 212 (430)
+ -| -..|..|...|.+.+..++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+...-.-.....
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 4 34 356788889999999999999999999876 45566788888999999999999999999887642111134455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC--CCCC-hhHHHHHHHHHh
Q 043370 213 TCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN--PQDA-APYVLLSNIHAS 287 (430)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~-~~~~~l~~~~~~ 287 (430)
.-.+++-.+.|+.+.+..+|+.. .-.| -...|+..+..-.++|+.+.+..+|+++..+. |... ..|.-.+..--.
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 56677778899999999999887 2223 46689999999999999999999999998665 4333 344455555556
Q ss_pred ccchhHHHHHHHHH
Q 043370 288 AKRWQGVSEFREAM 301 (430)
Q Consensus 288 ~g~~~~a~~~~~~m 301 (430)
.|+-+.++.+-.+.
T Consensus 1684 ~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARA 1697 (1710)
T ss_pred cCchhhHHHHHHHH
Confidence 66666655554433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.8e-05 Score=78.96 Aligned_cols=296 Identities=11% Similarity=-0.028 Sum_probs=187.9
Q ss_pred HHHHHHHHHcCChHHHHHHHccCC----CC------CH--HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----H
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMP----IR------NV--IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK----I 73 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~----~~------~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 73 (430)
......+...|++++|...++... .. .. .....+...+...|++++|...+++..+.-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 334455567788888887776432 11 11 11222334466889999999999888763111221 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-------C----C
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKA----GAS-LDVGVISSLISMYSRCGCLDDSVKTFLECEY-------S----D 137 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----d 137 (430)
..+.+...+...|++++|...+.+.... |.. +...+...+...+...|++++|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3445556667789999999988887643 111 1123455667788889999999988776431 1 1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH-
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKE--FEAN--DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY- 212 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~- 212 (430)
...+..+...+...|++++|...+++..... ..+. ...+..+.......|+.++|.+.+...............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2234455566777899999999998875431 1122 2334445566778899999999888875421111111111
Q ss_pred ----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcCC------CCCCh
Q 043370 213 ----TCVVDLLGRCGYLDEAAALIRNMPVK--ANA----IIWKTLLSACKTHKSTDMAGRIAEEILGVN------PQDAA 276 (430)
Q Consensus 213 ----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~ 276 (430)
......+...|+.+.|..++...... ... ..+..+..++...|+.++|...++++.... +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224455689999999998776211 111 113455566888999999999999987432 11234
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 277 PYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 277 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+...+..++...|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67778889999999999999999887644
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.7e-06 Score=68.95 Aligned_cols=116 Identities=8% Similarity=0.035 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH-HHhcCC--HHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM-YSRCGC--LDDS 126 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~--~~~A 126 (430)
.++.++++..+++.++.+ +.|...|..+...+...|+++.|...+++..+.... +..++..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555443 445555555555555566666666666655554322 45555555553 344444 3555
Q ss_pred HHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 127 VKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 127 ~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
.+++++.. ..++.++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555543 224455555555555555555555555555554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00038 Score=66.72 Aligned_cols=282 Identities=13% Similarity=0.142 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CC----HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC----------
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RN----VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR---------- 69 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------- 69 (430)
..|..+.+.|-..|+++.|+.+|++..+ +. ..+|-.-...=.+..+++.|+++.++.....-+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688899999999999999999998753 22 246666667777888999999998877532111
Q ss_pred -C------CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCH
Q 043370 70 -P------DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDV 138 (430)
Q Consensus 70 -p------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~ 138 (430)
+ +...|...+..--..|-++..+.+|+.+++..+. ++.+.-.....+-...-++++.+++++-. -|++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1 1233444555555668888999999999887665 44444445555666777899999999854 3444
Q ss_pred -hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--hhcCcHHHHHHHHHHHhhhcCCccC--Hh
Q 043370 139 -VLWSSMIAAYGF---HGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC--SHCGLKEKGMEFFDLMVKKYRRKPR--LE 210 (430)
Q Consensus 139 -~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 210 (430)
..||+-+.-+.+ ..+.+.|.++|++.++ |.+|...-+.-|+.+- -.-|....|..++++... ++++. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 467776655544 2478999999999998 6787765554454432 245888899999999865 45553 35
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHhcCC-CC-CChhHHHHHHH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIW---KTLLSACKTHKSTDMAGRIAEEILGVN-PQ-DAAPYVLLSNI 284 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~ 284 (430)
.|+..|.--+..=-+.....+|++. ..-||...- -.....-++.|.++.|..++....++. |. ++..|...=..
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 6776665332221112222333332 222443332 223334567899999999998887765 42 55666666666
Q ss_pred HHhccchh
Q 043370 285 HASAKRWQ 292 (430)
Q Consensus 285 ~~~~g~~~ 292 (430)
-.+.|+-+
T Consensus 704 EvrHGned 711 (835)
T KOG2047|consen 704 EVRHGNED 711 (835)
T ss_pred HHhcCCHH
Confidence 67788743
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.1e-06 Score=79.64 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=165.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
+|-...--.+.+.+.+.|-...|..+|++ ...|.-.|.+|...|+..+|..+..+..+. +||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 44445556788889999999999999987 456778889999999999999988887773 78999999999888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCHhHHHHHHHHHHhcCChHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLEC---EYSDVVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~d~~~~~~li~~~~~~g~~~~A~~ 159 (430)
-...-+++|.++.++.... .-..+.....+.++++++.+.|+.- ..--..+|.....+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777788888888765432 2222333334478889998888863 33456788888888888999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 160 LFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 160 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.|..-... .|| ...|+.+-.+|.+.++..+|...+.+..+- + ..+...|...+-...+.|.+++|.+.+.++
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99887763 565 466999999999999999999999988764 4 344556666666777889999998888877
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-06 Score=67.45 Aligned_cols=121 Identities=11% Similarity=0.002 Sum_probs=80.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV 237 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 237 (430)
.+|++..+. .|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444442 3443 444556667777777777777777642 2335666777777777777777777777776 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 238 KA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 238 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
.| +...|..+..++...|+.++|...+++.++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 5666777777777788888888888888888887777776555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.3e-05 Score=77.82 Aligned_cols=230 Identities=10% Similarity=0.084 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKIT-FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
.+...|..|+..|...+++++|.++.+...+. .|+... |..+...+.+.++...+..+ .+... .+...-++..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHH
Confidence 36678888888888888888888888866654 455433 22333344555555444443 22211 0011111111
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
-..|...|++- .+..++..+..+|-+.|+.++|...|+++++.. +-|..+.+.+...++.. ++++|.
T Consensus 103 e~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 103 EHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred HHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 11111111111 122345556666666666666666666666654 33455666666666666 666666
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHH---hh--cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLL---GR--CGYLDEAAALIRNM----PVKANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~---~~--~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
+++.+....+ -+...|+.+.... +. .-+++.-..+.+.+ ++.--+.++-.+-..|...++++++..++
T Consensus 170 ~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 170 TYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 6666655431 0111111111110 00 01111111111111 22234455666667788888999999999
Q ss_pred HHHhcCCCCCChhHHHHHHHHH
Q 043370 265 EEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 265 ~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999988888888888876
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00035 Score=66.93 Aligned_cols=288 Identities=14% Similarity=0.163 Sum_probs=181.1
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCCC----------CHHHHHHHHHHHHHCCChhHH---HHHHHHHHHCCCCCC
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIR----------NVIAWITLIAGKAQNGLAEDV---LDQYNLMRMVGFRPD 71 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g~~p~ 71 (430)
++..-+--|..+++.+++++|.+.+...... +-..|+.+-...+++-+.-.. .++++.+... -||
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftD 245 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTD 245 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcH
Confidence 3444666788888999999998888776532 344666666665555443332 2333333322 344
Q ss_pred H--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc----------------C------CHHHHH
Q 043370 72 K--ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC----------------G------CLDDSV 127 (430)
Q Consensus 72 ~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------------g------~~~~A~ 127 (430)
. ..|++|..-|.+.|.++.|..+|++.+..- .+..-++.+.+.|+.- | +++-..
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 3 457788888888888888888888776642 1233334444444321 1 122223
Q ss_pred HHHhccCC---------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHhhhc
Q 043370 128 KTFLECEY---------------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN------DVTFVSLLYACSHC 186 (430)
Q Consensus 128 ~~~~~~~~---------------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~~ 186 (430)
.-|+.+.. .++..|..-+..+ .|+..+-...|.+..+. +.|- ...|..+...|...
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 33333221 2445554444333 57778888888888765 3442 23577778888899
Q ss_pred CcHHHHHHHHHHHhhhcCCccC---HhHHHHHHHHHhhcCCHHHHHHHHHhC---CCC-----------------CCHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPR---LEHYTCVVDLLGRCGYLDEAAALIRNM---PVK-----------------ANAII 243 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-----------------p~~~~ 243 (430)
|+++.|+.+|++..+- ..+-- ..+|..-.++=.+..+++.|+++.++. |-. .+...
T Consensus 401 ~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred CcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999988653 22111 345666666677888899999988876 211 12445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 244 WKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
|...++.--..|-++....++++++++.--+|..-......+-...-++++.+++++
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 777777767778888888889988877654566555556666677777788777763
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=80.07 Aligned_cols=210 Identities=8% Similarity=0.006 Sum_probs=148.2
Q ss_pred HHHHHHHHHhccCChHHH-HHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----CHHHHHHHHhccCCCCHhHHHHHHHHH
Q 043370 74 TFVSVISSCSELATLGQG-QQIHAEVVKAGASLDVGVISSLISMYSRCG----CLDDSVKTFLECEYSDVVLWSSMIAAY 148 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~d~~~~~~li~~~ 148 (430)
....+=.+.+..|..+++ .++++++.+ ++...++.. .+.++..+...- ..++..+-.|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRY-PHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 333444455667766655 556666543 222222222 222333333322 23588888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
.+.|.+++|..+++...+. .|| ......+...+.+.+.+++|....++.... -+-+......+..++.+.|++++
T Consensus 97 ~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999885 666 456778888999999999999999999853 33356778888999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 228 AAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 228 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
|..+|++. .-.| +..+|..+..++...|+.++|...|++..+...+-...|+.++ ++...-...++.+.-.+
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHcCccc
Confidence 99999998 2344 4788999999999999999999999999977654555555443 23334445555555444
Q ss_pred C
Q 043370 306 V 306 (430)
Q Consensus 306 ~ 306 (430)
.
T Consensus 247 ~ 247 (694)
T PRK15179 247 D 247 (694)
T ss_pred c
Confidence 3
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00016 Score=69.19 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=95.3
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
...|+-++|....+.-.+.+ .-+.+.|..+.-.+-...++++|.+.|..+.+.+.. |..++.-|.-.-++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHH
Confidence 34455566655555544433 224455555555555555566666666666555422 5555555555555555555554
Q ss_pred HHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh------hhcCcHHHHHHHHH
Q 043370 128 KTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYAC------SHCGLKEKGMEFFD 197 (430)
Q Consensus 128 ~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~------~~~g~~~~a~~~~~ 197 (430)
..-.... ...-..|.....++.-.|++..|..+.++..+.- -.|+...+.....-. ...|.++.|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4444332 2233555555556666666666666666555442 134444444333222 12445555555544
Q ss_pred HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 043370 198 LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKT 246 (430)
Q Consensus 198 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 246 (430)
.-.. .+......-..-.+.+.+.|++++|..++..+ ...||..-|.-
T Consensus 210 ~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 210 DNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred hhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 4332 11112222233445555666666666666555 33344444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00042 Score=66.49 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
+.|..+.-.+-...++++|++.|.... +.|...|.-+.-.-++.|+++.....-.++.+.. +-....|.....+.-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQH 154 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHH
Confidence 456655555555666777777776543 3355666666666666667776666666666542 223345666666666
Q ss_pred ccCChHHHHHHHHHHHHcC-CCCcHhHHHHH------HHHHHhcCCHHHHHHHHhccCCC--CH-hHHHHHHHHHHhcCC
Q 043370 84 ELATLGQGQQIHAEVVKAG-ASLDVGVISSL------ISMYSRCGCLDDSVKTFLECEYS--DV-VLWSSMIAAYGFHGK 153 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--d~-~~~~~li~~~~~~g~ 153 (430)
-.|+...|..+.++..+.. -.|+...+.-. .....+.|..+.|.+.+...... |- ..-.+....+.+.++
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh
Confidence 6788888888888776654 23444444222 22345677777777777655432 22 222344566778889
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-hcCcHHHHH-HHHHHHhhhc----------------------------
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACS-HCGLKEKGM-EFFDLMVKKY---------------------------- 203 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~-~~~~~~~~~~---------------------------- 203 (430)
.++|..++..++.. .||..-|...+..+. +.-+.-++. .+|....+.+
T Consensus 235 lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 99999999998886 567666554444333 222222222 3333332211
Q ss_pred -----CCccCHhHHHHHHHHHhhcCCHHH----HHHHHHhC-C------------CCCCHHHHHHH--HHHHHhcCChhH
Q 043370 204 -----RRKPRLEHYTCVVDLLGRCGYLDE----AAALIRNM-P------------VKANAIIWKTL--LSACKTHKSTDM 259 (430)
Q Consensus 204 -----~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~~~~l--l~~~~~~~~~~~ 259 (430)
|+++ ++..+...|-.-...+- +..+...+ + ..|....|... ...+-..|+++.
T Consensus 313 ~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 2211 22222222222111111 11111111 1 13555556543 334667777777
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 260 AGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
|....+..++..|.-...|..=.+++.+.|..++|..++++.++.+
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 7777777777777666666666777777777777777777766544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.6e-06 Score=78.33 Aligned_cols=189 Identities=15% Similarity=0.118 Sum_probs=130.6
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 102 GASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181 (430)
Q Consensus 102 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 181 (430)
+++|-...-..+...+.++|-..+|..+|++. ..|.-.|.+|...|+..+|..+..+..+. +||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555566667888899999999999999874 56778888999999999999988887773 788888888888
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 259 (430)
..-..--+++|+++.+....+ .-..+.....+.++++++.+.|+.- .++| -..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 877777778888887765432 1111111222356666666666643 3333 45566666666666666677
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 260 AGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
|.+.|.....++|++..+|+.+..+|.+.|+-.+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777766666677666677777777777776666666666665544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-05 Score=68.48 Aligned_cols=156 Identities=11% Similarity=0.068 Sum_probs=99.6
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 043370 41 ITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120 (430)
Q Consensus 41 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 120 (430)
..+-..+...|+-+.+..+....... -+-|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555666667766666666654432 13344445556666677777777777777766543 44777777777777777
Q ss_pred CCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 121 GCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 121 g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
|+.+.|..-|.+.. ..+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777766533 3456666777777777777777777777766653 2245555556666677777777777655
Q ss_pred HH
Q 043370 198 LM 199 (430)
Q Consensus 198 ~~ 199 (430)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00071 Score=72.12 Aligned_cols=288 Identities=9% Similarity=-0.041 Sum_probs=180.0
Q ss_pred HHHcCChHHHHHHHccCCC----CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC--C----CCCHH--HHHHHHHHHh
Q 043370 16 YMKSGSLVEGEKVIRLMPI----RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG--F----RPDKI--TFVSVISSCS 83 (430)
Q Consensus 16 ~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~~ 83 (430)
....|+++.+...++.++. .+..........+...|++++|...+......- . .|... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4456677777777776641 122222344455667899999999888775421 0 11111 1222334456
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHhccCC-------CC--HhHHHHHHHHHHh
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDV----GVISSLISMYSRCGCLDDSVKTFLECEY-------SD--VVLWSSMIAAYGF 150 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~d--~~~~~~li~~~~~ 150 (430)
..|+++.|...++...+.-...+. ...+.+...+...|++++|...+++... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988763222221 3446677778889999999998877541 11 2345556677888
Q ss_pred cCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC-Ccc--CHhHHHHHHHHHh
Q 043370 151 HGKGEEAINLFEQMEQK----EFE--A-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR-RKP--RLEHYTCVVDLLG 220 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p--~~~~~~~li~~~~ 220 (430)
.|++++|...+++.... |.. | ....+..+...+...|++++|...+.+...... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876542 211 1 223344455566778999999998888754211 112 2334555667788
Q ss_pred hcCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHhcCCCCCChh----HHHHHHHHHh
Q 043370 221 RCGYLDEAAALIRNM----PVKANAIIWK-----TLLSACKTHKSTDMAGRIAEEILGVNPQDAAP----YVLLSNIHAS 287 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m----~~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~ 287 (430)
..|++++|.+.+++. ........+. ..+..+...|+.+.|...+.......+..... +..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999998887765 1111111111 11233556889999998887765433222211 4567888999
Q ss_pred ccchhHHHHHHHHHHh
Q 043370 288 AKRWQGVSEFREAMRE 303 (430)
Q Consensus 288 ~g~~~~a~~~~~~m~~ 303 (430)
.|++++|...+++...
T Consensus 704 ~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 704 LGQFDEAEIILEELNE 719 (903)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999888754
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-07 Score=53.02 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 173 (430)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-07 Score=53.19 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK 72 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 72 (430)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-05 Score=75.38 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=71.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
+|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++.+.++.. +.+..........+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34455555666777777777766552 432 2335555555556666666666666543 235555666666666677
Q ss_pred CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 122 CLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 122 ~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
+.+.|+.+.+++. +.+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777766654 2345567777777777777777776666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=64.32 Aligned_cols=91 Identities=8% Similarity=-0.064 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
+..+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+...+... .+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344444555555555555555554432 23444445555555555555555555555554332 244444444444444
Q ss_pred cCCHHHHHHHHhc
Q 043370 120 CGCLDDSVKTFLE 132 (430)
Q Consensus 120 ~g~~~~A~~~~~~ 132 (430)
.|+.++|...|+.
T Consensus 105 ~g~~~eAi~~~~~ 117 (144)
T PRK15359 105 MGEPGLAREAFQT 117 (144)
T ss_pred cCCHHHHHHHHHH
Confidence 4444444444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00057 Score=58.68 Aligned_cols=243 Identities=11% Similarity=0.031 Sum_probs=122.9
Q ss_pred cCChHHHHHHHccCC-C-CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHH
Q 043370 19 SGSLVEGEKVIRLMP-I-RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQ-GQQIH 95 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~ 95 (430)
.|++..++..-.... . .++..---|-++|...|++...+.- .... -.|....+..+.......+..+. -.++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 455555555443322 2 2333334455666666665443322 2221 13333334333333333333332 22344
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVT 175 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 175 (430)
+.+.......+......-...|+..|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+. .+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 44444444444344444455677777777777777663332333222 33445556677777777777653 25566
Q ss_pred HHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 043370 176 FVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLS 249 (430)
Q Consensus 176 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 249 (430)
.+.|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-+..+....|++++|..++++. ....++.+...++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 6656555533 3456666666766654 24566666666666666666666666666655 11123444444444
Q ss_pred HHHhcCC-hhHHHHHHHHHhcCCC
Q 043370 250 ACKTHKS-TDMAGRIAEEILGVNP 272 (430)
Q Consensus 250 ~~~~~~~-~~~a~~~~~~~~~~~p 272 (430)
.....|. .+.-.+...++....|
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCC
Confidence 4333333 3334455555555555
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.8e-05 Score=63.76 Aligned_cols=152 Identities=15% Similarity=0.064 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
..+-..+.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -++|..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 334444444555554444444422 224444444555555555555555555555443 2445555555555555555
Q ss_pred cHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 188 LKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNMPVK--ANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
+.++|..-|.+..+- .| +....+.|.-.|.-.|+++.|..++...-.. -|..+-..+.-.....|+++.|..+.
T Consensus 149 r~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555555432 22 2334444555555555555555555544111 13444444444455555555555444
Q ss_pred HH
Q 043370 265 EE 266 (430)
Q Consensus 265 ~~ 266 (430)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 33
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00023 Score=66.81 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=77.7
Q ss_pred HHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChH
Q 043370 14 HMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELATLG 89 (430)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~ 89 (430)
++.+..|+++.|+..|.... .+|-+.|..-..+|+..|++++|++=-.+-++ +.|+. ..|+-...++...|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999997543 45788888888999999999999876666655 46774 56888888888899999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
+|..-|.+-++.. +.|...++.|.+++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999988877764 33666666666666
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=63.95 Aligned_cols=175 Identities=12% Similarity=0.143 Sum_probs=108.1
Q ss_pred CChHHHHHHHccCC-CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043370 20 GSLVEGEKVIRLMP-IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV-GFRPDKITFVSVISSCSELATLGQGQQIHAE 97 (430)
Q Consensus 20 g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 97 (430)
+++..+..+.++.+ +.+..+-+......-+.|++++|++-|+...+- |.. ....|+..+.- .+.|+.+.|.+...+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHH
Confidence 44444444555444 234444444444556788888888888888774 343 34566665543 456888888888888
Q ss_pred HHHcCCCC-------------c---------------HhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHhHHHHH
Q 043370 98 VVKAGASL-------------D---------------VGVISSLISMYSRCGCLDDSVKTFLECEYS-----DVVLWSSM 144 (430)
Q Consensus 98 ~~~~g~~~-------------~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~l 144 (430)
++++|+.. | +..+|.-...+.+.|+.+.|.+.+-.|+++ |++|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 88776532 1 122333333456778888888888888753 66666655
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHH
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 198 (430)
.-.-. .+++.+..+-+.-+.+.. +-...||..++-.||+..-++.|-+++.+
T Consensus 284 Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 284 ALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 43322 344555555555555543 23456888888888888888887777654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0001 Score=71.47 Aligned_cols=137 Identities=17% Similarity=0.249 Sum_probs=68.2
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHH
Q 043370 80 SSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 80 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 159 (430)
.+......+.+|..+++.+..... -..-|..+.+-|+..|+++-|+++|-+.. .++-.|..|.+.|+|+.|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 334444566666666665554322 12234455566666666666666665432 23444556666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 160 LFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 160 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+-.+.. |.......|.+-..-.-..|++.+|.++|-.+. .|+. -|.+|-+.|..++..++..+-
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 554432 222233344444444455555555555544331 1222 244555555555555555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00015 Score=71.11 Aligned_cols=239 Identities=12% Similarity=0.079 Sum_probs=157.5
Q ss_pred chhHHHHHHH--HHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC---------CCCCCHH
Q 043370 5 DLVAGSSLAH--MYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV---------GFRPDKI 73 (430)
Q Consensus 5 ~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~ 73 (430)
|..+--++++ .|..-|+++.|.+-.+.++ +-..|..|.+.|.+..+.+-|.-.+-.|... .-.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4445555554 3667789999888776665 4577999999999999888887777666431 11232 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CHhHHHHHHHHHHhcC
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-DVVLWSSMIAAYGFHG 152 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-d~~~~~~li~~~~~~g 152 (430)
+=.-+.-....+|.+++|..+|++-.+ |..|=..|-..|.+++|.++-+.-..- --.||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 222222233578999999999998765 345566788899999998887643221 1234554555555567
Q ss_pred ChHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH
Q 043370 153 KGEEAINLFEQM----------EQKE---------FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213 (430)
Q Consensus 153 ~~~~A~~~~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 213 (430)
+.+.|++.|++. +... -..|...|..-....-..|..|.|+.+|....+ |-
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~f 942 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YF 942 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hh
Confidence 777777777652 2211 012344455555555678888888888887743 45
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 214 CVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+++...|-.|+.++|-++-++-+ |....-.|...|-..|++.+|...|.++.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 67777788888888888887765 55555566777888888888877776653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00016 Score=72.90 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHH
Q 043370 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMI 145 (430)
Q Consensus 69 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li 145 (430)
..+...+..|..+..+.|.+++|..+++...+..+. +......+...+.+.+++++|+..+++... .+....+.+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 445677777777777788888888888877775422 566667777778888888888887777653 2456666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHH
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTC 214 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 214 (430)
.++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|+...+. ..|...-|+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~ 227 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTR 227 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHH
Confidence 77777888888888888877632 333667777777777888888888888877664 2344444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00036 Score=71.34 Aligned_cols=215 Identities=9% Similarity=0.050 Sum_probs=138.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC--CCC-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH---------
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP--IRN-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK--------- 72 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------- 72 (430)
+...+..|+..|...+++++|.++.+... .|+ ...|-.+...+.+.++.+++..+ .+... +..+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~ 106 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHIC 106 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHHH
Confidence 45678999999999999999999988543 233 23343344466677776666555 33322 12222
Q ss_pred ----------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHH
Q 043370 73 ----------ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWS 142 (430)
Q Consensus 73 ----------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~ 142 (430)
..+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|++++...
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA--------- 175 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA--------- 175 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH---------
Confidence 566667777777788888888888888776 34777888888888877 888887776653
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc
Q 043370 143 SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC 222 (430)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 222 (430)
+..|...+++.++.++|.++... .|+...+ -.++.+.+....+..--+.++-.+...|-..
T Consensus 176 --V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 176 --IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred --HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 33366666777788888777775 3443322 2222233322222223345566677778888
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043370 223 GYLDEAAALIRNM-PVKA-NAIIWKTLLSACK 252 (430)
Q Consensus 223 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 252 (430)
++++++..+++.+ ...| |.....-++..|.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 8888888888887 4444 4555555666654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=62.30 Aligned_cols=119 Identities=11% Similarity=-0.021 Sum_probs=96.5
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+....-.+...+...|++++|..+|+-. ...| +..-|-.|...|...|++++|+..+.....++|+++.++..+..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444555666677899999999999987 4556 5677888888899999999999999999999999999999999999
Q ss_pred HhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 043370 286 ASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMK 349 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 349 (430)
...|+.+.|.+.|+...... ..+|+..++....+..++.+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999775432 135666666666666665554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00014 Score=67.52 Aligned_cols=175 Identities=15% Similarity=0.095 Sum_probs=125.3
Q ss_pred HHHHHHHHhccCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 123 LDDSVKTFLECEY------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 123 ~~~A~~~~~~~~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
+.+++.--+.++. ++...+...+.+.........+..++.+-.+. .-...-|...+ .+...|..++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHH
Confidence 3344444444542 35556666666554433333333333322221 11223344333 455788999999999
Q ss_pred HHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
+.+.+. .+-|........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|.++++.....+|.+
T Consensus 330 ~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 330 QPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 998864 3345666677889999999999999999988 56676 6677788888999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
+..|..|..+|...|+..++...+.++.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999888887764
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-06 Score=50.80 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP 70 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 70 (430)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-05 Score=71.77 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+.. +-|...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3344566666777888888888888877666666667777777778888888888877652 334444555555677788
Q ss_pred cHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043370 188 LKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 239 (430)
+.+.|..+.+++.+ ..| +..+|..|..+|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 88888888888774 345 44678888888888888888888888876554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00028 Score=68.54 Aligned_cols=253 Identities=12% Similarity=0.122 Sum_probs=131.8
Q ss_pred cCChHHHHHHHccCCCCCHH--HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPIRNVI--AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHA 96 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 96 (430)
...+..|+.+++.+..+++. -|..+..-|+..|+++.|.++|-+. + .++-.|..|.+.|.++.|.++-.
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHH
Confidence 33444444444444433222 2334444455555555555554322 1 12333444555555555444432
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HH
Q 043370 97 EVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN--DV 174 (430)
Q Consensus 97 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ 174 (430)
+. .|.+..+..|.+-..-.-+.|++.+|+++|-.+..||. .|..|-++|..+..+++..+- .|+ ..
T Consensus 816 e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~d 883 (1636)
T KOG3616|consen 816 EC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHD 883 (1636)
T ss_pred Hh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhH
Confidence 22 23333344444444444455555555555555444443 344555556555555555432 233 23
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C---CHHHHHHH---
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVK-A---NAIIWKTL--- 247 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p---~~~~~~~l--- 247 (430)
|...+..-+-..|++..|...|-+.. -|.+-+.+|-.++.+++|.++-+.-+-. . -...|..-
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGG 953 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCc
Confidence 55566667777888888877766542 3566788888889999998887765211 0 12233221
Q ss_pred ---HHHHHhcCChhHHHH-------------HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 248 ---LSACKTHKSTDMAGR-------------IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 248 ---l~~~~~~~~~~~a~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+..+-++|-.+.|.. +.+-..+ -..+.....+..-+...|++++|-+-+-+..+.
T Consensus 954 daavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 954 DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 222344444444433 3322221 124456667777788999999998877766543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00043 Score=58.97 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEYS-----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 186 (430)
-++-+...+|+.+.|..+++.+... -+.-..+| -+-..|++++|+++++.+.+.+ +.|.+++..=+...-..
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3344445566777777777665422 11112221 2344688999999999998875 55677777666666677
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT---HKSTDMAG 261 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~~~~~~a~ 261 (430)
|+.-+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -..| +...+..+...+.. ..+.+.|.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777888888777764 5678899999999999999999999999988 4455 45555555555332 33678899
Q ss_pred HHHHHHhcCCCCCChhHHHH
Q 043370 262 RIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~~~~l 281 (430)
+++.+.++++|.+...+..+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 99999999998655554444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00039 Score=68.40 Aligned_cols=252 Identities=12% Similarity=0.064 Sum_probs=168.0
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCC-C----------CH-HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPI-R----------NV-IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK 72 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 72 (430)
...+|..+..|+.+..+++-|.-.+..|.. + |. ..-.-....-.+.|-.++|+.+|++-.+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 346899999999999999999888888862 1 11 11112222345778899999999887753
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------------
Q 043370 73 ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY----------------- 135 (430)
Q Consensus 73 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------- 135 (430)
..+=..|...|.+++|.++-+.=-+..+ ..+|.....-+-..++++.|++.|++...
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 2333445567899999888754322222 23555566666677888888888876431
Q ss_pred ------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH
Q 043370 136 ------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL 209 (430)
Q Consensus 136 ------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 209 (430)
+|...|.-...-+-..|+.+.|+.+|..... |.+++...|-.|+.++|-++-++- | |.
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es----g---d~ 967 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES----G---DK 967 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc----c---cH
Confidence 2444454455555667899999999887653 567778888899999998886653 2 45
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------ChhHHHHHHHHHhcCCCCC
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK---------------STDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~p~~ 274 (430)
...-.|.+.|...|++.+|..+|.+. .++...|..|..++ +.-.|-++|++.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrA------qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~------- 1034 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRA------QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL------- 1034 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc-------
Confidence 55667899999999999999999876 23333333333332 223333444431
Q ss_pred ChhHHHHHHHHHhccchhHHHHH
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
...+..-+..|.++|.+.+|.++
T Consensus 1035 g~~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1035 GGYAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred chhhhHHHHHHHhhcchHHHHHH
Confidence 22334456678888888888765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=50.17 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00052 Score=63.90 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=84.1
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-HhHHHHHHHHHHhcCChHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--SD-VVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d-~~~~~~li~~~~~~g~~~~A~~ 159 (430)
...|+++.|+..++.+++. .+.|+.......+.+.+.++..+|.+.|+.+.. |+ ...+-.+..+|.+.|++.+|+.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3556777777777776665 234666666667777777777777777776542 32 4555566667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 160 LFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 160 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+++..... .+-|+..|..|..+|...|+..++..-.. +.|...|++++|..++...
T Consensus 396 ~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 396 ILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA-------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHH
Confidence 77776655 35566677777777777776665544332 2345566777776666555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0059 Score=58.29 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHH-HHhc-CChhHHHHHHHHHhcCCCCC-ChhHHHHHHHHHhccchhHHHHHHH
Q 043370 224 YLDEAAALIRNMPV-KANAIIWKTLLSA-CKTH-KSTDMAGRIAEEILGVNPQD-AAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 224 ~~~~A~~~~~~m~~-~p~~~~~~~ll~~-~~~~-~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
..+.+.++-...+. .|.. .+..++.. .... .....|..++....+..|.+ ......++......|+++.|.+++.
T Consensus 322 k~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33444444444432 3433 34444444 2222 24777888888888888865 4455666778899999999999999
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-05 Score=62.02 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
.....+...+...|++++|...|+.. ...| +...|..+...+...|+++.|...+++..+.+|.++..+..+..+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44455556666666666666666665 3233 455566666666667777777777777766677666777777777777
Q ss_pred ccchhHHHHHHHHHHhC
Q 043370 288 AKRWQGVSEFREAMRER 304 (430)
Q Consensus 288 ~g~~~~a~~~~~~m~~~ 304 (430)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00091 Score=65.52 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVD 217 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 217 (430)
..|......+.+.+..++|...+.+.... .+-....|......+...|..++|.+.|.... -+.| ++...+++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 34666777888899999999888887765 24455666666677788899999999999876 4566 5678899999
Q ss_pred HHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh
Q 043370 218 LLGRCGYLDEAAA--LIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA 276 (430)
Q Consensus 218 ~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 276 (430)
++.+.|+..-|.+ ++..+ .+.| +...|..+...+.+.|+.+.|...|....++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998887777 88777 6666 7889999999999999999999999999988765543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0017 Score=57.76 Aligned_cols=263 Identities=13% Similarity=0.064 Sum_probs=188.0
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhH-HHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV-ISSLI 114 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li 114 (430)
++.-.--+-..+...|++..|+.-|....+-+ +.+-.++---...|...|....|..-+...++. +||-.. ..--.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444457778889999999999999887642 222334444456677788888888888888874 566432 23345
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCH----------------hHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043370 115 SMYSRCGCLDDSVKTFLECEYSDV----------------VLWS--SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176 (430)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~d~----------------~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 176 (430)
..+.+.|.++.|..-|+.+.+.++ ..|+ ..+..+.-.|+...|+.....+++. .+-|...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHH
Confidence 677899999999999988753211 1222 2344566689999999999999985 24466667
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH---------
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKT--------- 246 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~--------- 246 (430)
..-..+|...|.+..|+.=+....+- ...+....--+-..+-..|+.+.++..+++. .+.||....-.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 77778889999999998877776542 2335566667788888999999999999887 77787543211
Q ss_pred --HHHH--HHhcCChhHHHHHHHHHhcCCCC----CChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 247 --LLSA--CKTHKSTDMAGRIAEEILGVNPQ----DAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 247 --ll~~--~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
|-++ ....+++..+....+..++.+|. ....+..+..+|...|++.+|.+...+..+.
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 1122 45577888888888888888885 2335567788888999999999988877653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.8e-05 Score=59.27 Aligned_cols=94 Identities=5% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 043370 73 ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYG 149 (430)
Q Consensus 73 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~ 149 (430)
.....+...+...|++++|.+.++.+.+.+ +.+...+..+...|.+.|++++|...|+... +.+...|..+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334445555555666666666666665543 2255555666666666666666666665532 234455555566666
Q ss_pred hcCChHHHHHHHHHHHHC
Q 043370 150 FHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~ 167 (430)
..|++++|+..|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00012 Score=73.37 Aligned_cols=159 Identities=14% Similarity=0.036 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG-FRPDKITFVSVISSC 82 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~ 82 (430)
..|+.|...|....+...|.+.|+..-+ .|..++......|++..++++|..+.-..-+.. ...-...|....-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4788899999988889999999987654 467788999999999999999999843322211 111122333344455
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHH---HHHHHHhcCChHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSS---MIAAYGFHGKGEEAIN 159 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~---li~~~~~~g~~~~A~~ 159 (430)
...++...+..-|+...+..+. |...|..|+.+|.++|.+..|.++|.+...-++.+|.. ....-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 6778888888888888877544 88999999999999999999999998776444333322 2234456788888888
Q ss_pred HHHHHHH
Q 043370 160 LFEQMEQ 166 (430)
Q Consensus 160 ~~~~m~~ 166 (430)
.+.....
T Consensus 652 ~l~~ii~ 658 (1238)
T KOG1127|consen 652 ALGLIIY 658 (1238)
T ss_pred HHHHHHH
Confidence 8777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0024 Score=64.44 Aligned_cols=256 Identities=16% Similarity=0.179 Sum_probs=173.2
Q ss_pred cCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEV 98 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 98 (430)
-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+.+.|.+++-.+.+...
T Consensus 1088 i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 57788888888777765 45888888888899888888776433 26678888899999999998888888777
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-----------------------CCCHhHHHHHHHHHHhcCChH
Q 043370 99 VKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE-----------------------YSDVVLWSSMIAAYGFHGKGE 155 (430)
Q Consensus 99 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------------~~d~~~~~~li~~~~~~g~~~ 155 (430)
.+..-+|.+ -+.|+-+|++.+++.+-++.+..-. -.++.-|..|...+...|+++
T Consensus 1160 Rkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1160 RKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 766555543 4578888888888887766553211 014455777777888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 156 EAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.|.+.-++. .+..||..+-.+|...+.+..|. |..- ++.....-..-|+..|-..|-+++...+++..
T Consensus 1238 ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1238 GAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 888776553 25678888888888777665543 3211 23334556677899999999999999998876
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHh-cCC-C------CCChhHHHHHHHHHhccchhHHHHH
Q 043370 236 -PVK-ANAIIWKTLLSACKTHKSTDMAGRIAEEIL-GVN-P------QDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 236 -~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-p------~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
|.+ .....|+-|.-.|.+.. +++..+.++-.- +++ | .....|.-|.-.|.+-..|+.|.-.
T Consensus 1306 LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 543 24445555555555543 444444333322 222 2 1345677777777777777776543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00075 Score=57.96 Aligned_cols=242 Identities=9% Similarity=0.011 Sum_probs=141.8
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 124 (430)
+-+.-.|++..++..-...... +-+...-.-+-++|...|++.... ..+.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3444556666665544333322 133444445556666666653322 2222222 333333333333333333333
Q ss_pred HHHH-HHhccCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 125 DSVK-TFLECEYS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 125 ~A~~-~~~~~~~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
+-.. +.+.+..+ +.+....-...|+..|++++|++..+... ..+.... =...+.+..+++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3222 22333222 22223333446788889999998887621 1222222 223345677888888888888
Q ss_pred hhhcCCccCHhHHHHHHHHHhh----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 200 VKKYRRKPRLEHYTCVVDLLGR----CGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 200 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+- .+..+.+.|..++.+ .+.+.+|.-+|++| +..|+..+.+-+..++...|++++|..+++.++..++.
T Consensus 164 q~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 642 244555556555543 46788899999998 35678888888888888899999999999999888888
Q ss_pred CChhHHHHHHHHHhccchhHH-HHHHHHHH
Q 043370 274 DAAPYVLLSNIHASAKRWQGV-SEFREAMR 302 (430)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 302 (430)
++.+...++-.-...|+-.++ .+.+..++
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 888888887777777766553 34444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0049 Score=58.26 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKA-NAIIWKTLLSACKTHKSTDMAGRIAE 265 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 265 (430)
+....+++++.....+.|+. +|.+++..-.|..-+..|..+|.+. +..+ ++.++++++.-++ .++.+.|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 33444555554443444443 5667777777777788888888887 2334 6677777776655 466788888888
Q ss_pred HHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCC
Q 043370 266 EILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKE 309 (430)
Q Consensus 266 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 309 (430)
--+...++++..-...++-+.+.++-..+..+|++....++.++
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 88777776666666777778888888888888888877755443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00036 Score=56.25 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH--hHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD---KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDV--GVISSL 113 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~l 113 (430)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....|+. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 445555554 3666777777777776652 222 122333445666677777777777777765532221 233445
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC--CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYS--DVVLWSSMIAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~ 163 (430)
...+...|++++|+..++....+ ....+......|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666677777777776654432 334445555666666777777666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0011 Score=66.67 Aligned_cols=242 Identities=15% Similarity=0.117 Sum_probs=169.6
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 91 (430)
+.......+-+++|..+|++... +...-+.||. .-+..+.|.+.-++.- .+..|+.+..+-.+.|...+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 44556677889999999987543 4555566665 3466777877655442 346799999999999999988
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLEC----EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 92 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
.+-|-+ . .|+..|...++...+.|.+++-.+.+.-. .+|.+ =+.||-+|++.++..+..++.
T Consensus 1124 ieSyik---a---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1124 IESYIK---A---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred HHHHHh---c---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh------
Confidence 876633 2 37778999999999999999999888643 34444 356899999999988766654
Q ss_pred CCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCC-----------
Q 043370 168 EFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP----------- 236 (430)
Q Consensus 168 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------- 236 (430)
..||......+..-|...+.++.|.-+|.... .|..|...+...|.+..|.+.-++..
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 35788888888888999999988888777653 34555555556666666555444432
Q ss_pred --------------CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 237 --------------VK--ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 237 --------------~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
.. -...-..-|+.-|...|-+++-+.+++..++++.-....|.-|.-.|++-
T Consensus 1259 Cvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 11 12223344666667777778777777777777655666676666666654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00038 Score=59.24 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=96.5
Q ss_pred CCHHHHHHHHhccCC--------CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhhcCcHH
Q 043370 121 GCLDDSVKTFLECEY--------SDV-VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL-LYACSHCGLKE 190 (430)
Q Consensus 121 g~~~~A~~~~~~~~~--------~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~ 190 (430)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|+.+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 355666666655431 111 22333344445566666777777766554 2 333221111 11233456677
Q ss_pred HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 191 KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 191 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+|.++++.+..+ -+.|..++--=+-+.-..|+--+|.+-+... .+-.|...|.-+-..|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777776654 1234444544444444555555555554444 334466677777777777777777777777777
Q ss_pred cCCCCCChhHHHHHHHHHhccch---hHHHHHHHHHH
Q 043370 269 GVNPQDAAPYVLLSNIHASAKRW---QGVSEFREAMR 302 (430)
Q Consensus 269 ~~~p~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~ 302 (430)
=..|.++..+..+...+...|.. +-+.+.+.+-.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66776666666666666555433 33444444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.4e-06 Score=46.68 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEF 169 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 169 (430)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.7e-06 Score=46.92 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGF 68 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 68 (430)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00079 Score=54.23 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH--hHHHHHH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEAN---DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL--EHYTCVV 216 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li 216 (430)
..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|.. .....|.
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3344444 2555666666666665542 112 122223334555566666666666666543 211211 1233345
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 217 DLLGRCGYLDEAAALIRNMPVK-ANAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
..+...|++++|+..++..+.. .....+......+...|+.++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555566666666666554211 1233334444445555666665555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0065 Score=58.01 Aligned_cols=280 Identities=13% Similarity=0.103 Sum_probs=166.1
Q ss_pred HHHHHHHcCChHHHHHHHccC--------CCC--C---HH-----HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH
Q 043370 12 LAHMYMKSGSLVEGEKVIRLM--------PIR--N---VI-----AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI 73 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m--------~~~--~---~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 73 (430)
....+...|++.+|+++++.. ..- + .. .--.|.-.+-..|+.++|.+++...++.. .+|..
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~ 259 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEP 259 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCch
Confidence 345677789999999998876 111 1 11 12234455677899999999999988875 55653
Q ss_pred HHHHHHHHH---hccCChHH--HHHHHHHH-----------HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 043370 74 TFVSVISSC---SELATLGQ--GQQIHAEV-----------VKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD 137 (430)
Q Consensus 74 t~~~ll~~~---~~~g~~~~--a~~~~~~~-----------~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d 137 (430)
......+.+ ....++-. ....++.. ........+..-+.++.+|. +..+.+.+.-...+...
T Consensus 260 ~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 260 SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMS 337 (652)
T ss_pred HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccC
Confidence 333222221 11111111 11111111 00001112333355666665 44456666666665432
Q ss_pred -HhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhhcCcHHHHHHHHH--------HHhhhcC
Q 043370 138 -VVLWSSMIAAYG--FHGKGEEAINLFEQMEQKEFEAND--VTFVSLLYACSHCGLKEKGMEFFD--------LMVKKYR 204 (430)
Q Consensus 138 -~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~ 204 (430)
...+.+++.... +...+..|.+++...-+. .|+. ......+......|+++.|.+++. .+.+- +
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~ 414 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-K 414 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-c
Confidence 233444443332 223577888888777654 3443 344455556678999999999998 44432 3
Q ss_pred CccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 205 RKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--------PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 205 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
.. +.+-..++..|.+.++-+.|..++.+. .-.+. ..+|.-+..--.++|+.++|..+++++.+.+|++.
T Consensus 415 ~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 415 HL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred cC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 33 345567888888888766666666554 11221 22333333344567999999999999999999999
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHH
Q 043370 276 APYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
.+...++.+|+.. +.+.|..+-+.
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999876 46666665443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00021 Score=55.22 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSA 250 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 250 (430)
..+...+...|++++|...|..+.+.+.-.+ ....+..+..++.+.|++++|...++.+ ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444455555555555555543311101 1233444555555555555555555544 21222 3344555555
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 251 CKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
+...|+.+.|...++++.+..|+++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666654443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00015 Score=52.84 Aligned_cols=92 Identities=21% Similarity=0.151 Sum_probs=66.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc
Q 043370 212 YTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK 289 (430)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 289 (430)
+..+...+...|++++|...+++. ...| +...+..+...+...++++.|...+++.....|.+..++..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777777777777765 3333 33556666667777788888888888888777777777778888888888
Q ss_pred chhHHHHHHHHHHh
Q 043370 290 RWQGVSEFREAMRE 303 (430)
Q Consensus 290 ~~~~a~~~~~~m~~ 303 (430)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0042 Score=55.60 Aligned_cols=291 Identities=12% Similarity=0.073 Sum_probs=169.7
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCC---------------CHHHH--------------HHHHHHHHHCCChh
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIR---------------NVIAW--------------ITLIAGKAQNGLAE 54 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------------~~~~~--------------~~li~~~~~~g~~~ 54 (430)
|+..++-.|...+.-.|.+.+|..+-.+.++. |..-| -+|.+..-..-.+.
T Consensus 89 ~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 89 APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Confidence 44455555666666677888888776665531 11111 12222222334578
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh--cCCHHHH--HHH
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISS-CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR--CGCLDDS--VKT 129 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A--~~~ 129 (430)
+|++++.+.+.. .|+-...+.-+.. |.+..-++.+.+++.--++. ++.++...|....-..+ .|+..++ ..+
T Consensus 169 eAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 169 EAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 888888888875 4566666654444 45666677777777665554 23233333333222221 1221111 111
Q ss_pred HhccC-------------------------------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043370 130 FLECE-------------------------------YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178 (430)
Q Consensus 130 ~~~~~-------------------------------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 178 (430)
-+... +.=+.+--.|+--|.+.++.++|..+.+++.- ..|-......
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKg 323 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKG 323 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHH
Confidence 11111 11122333456678889999999998877642 2444433333
Q ss_pred HHHHh-----hhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC-CHHHHHHHHH
Q 043370 179 LLYAC-----SHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNMP--VKA-NAIIWKTLLS 249 (430)
Q Consensus 179 ll~a~-----~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p-~~~~~~~ll~ 249 (430)
+..+- .....+.-|.+.|+..-.. +..-| ..-..++...+.-..++|+.+..++.+. +.. |...+ .+..
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQ 401 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQ 401 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHH
Confidence 33322 1122345567777665443 43333 3345567777777788999988888772 222 34444 4778
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHH-HHHHHHHhccchhHHHHHHHHH
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYV-LLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+.+..|++.+|+++|-++.+.+-.|..+|. .|.++|.+.++.+-|+.++-++
T Consensus 402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 899999999999999988776644666665 5678889999999998887655
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00089 Score=53.46 Aligned_cols=103 Identities=6% Similarity=-0.019 Sum_probs=69.4
Q ss_pred HHccCC-CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 043370 28 VIRLMP-IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD 106 (430)
Q Consensus 28 ~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 106 (430)
.+..+. ..+....-.+..-+.+.|++++|.++|+.+.... +-+..-|-.|..+|-..|++++|...|.......+ .|
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CC
Confidence 333444 4444455556666677788888888887777653 33455566666677777788888888877777654 36
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhc
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~ 132 (430)
+..+-.+..+|.+.|+.+.|++.|+.
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777777777777777777777765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.02 Score=57.47 Aligned_cols=222 Identities=13% Similarity=0.112 Sum_probs=125.5
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS--CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 125 (430)
...+++.+|++...++++. .||.. |..++.+ ..+.|..++|..+++.....+.. |..+...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3556777777777777664 34432 2233333 34677777777666655544433 67777777777777777777
Q ss_pred HHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC----------cHHHHH
Q 043370 126 SVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG----------LKEKGM 193 (430)
Q Consensus 126 A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------~~~~a~ 193 (430)
|..+|+.... |+......+..+|.+.+.+.+-.+.--+|-+. ++-+...|-++++.....- .+.-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 7777777653 33333444555666666554443333333332 3444555555555544321 133456
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHh-C-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRN-M-PVKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
+.++.+.+..|..-+..-...-...+...|++++|.+++.. . ...+ +...-+.-+..+...+++.+-.++..+++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 66666666533111222222223344566778888888732 2 1112 333334455557777788888888888877
Q ss_pred CCCCC
Q 043370 270 VNPQD 274 (430)
Q Consensus 270 ~~p~~ 274 (430)
.+++|
T Consensus 255 k~~Dd 259 (932)
T KOG2053|consen 255 KGNDD 259 (932)
T ss_pred hCCcc
Confidence 77755
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0055 Score=61.96 Aligned_cols=176 Identities=11% Similarity=-0.003 Sum_probs=108.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHH--HHHHHH
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-NDV--TFVSLL 180 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~--t~~~ll 180 (430)
...|..|...|...-+...|.+.|+..- ..|..++......|++..++++|..+.-..-+. .| -.. .|....
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhcc
Confidence 4567777788877777778888887644 346677777888888888888888772222111 11 111 122233
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCh
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSA-CKTHKST 257 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~~~~ 257 (430)
-.|...++...+...|+...+ +.| |...|..+.++|.++|++..|.++|.+. ..+|+...-.-.... -+..|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 345667777777777777653 344 6777888888888888888888888777 445543322222222 5667788
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 258 DMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
.+|...+..+..........-+.|...+.+
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 888887777764333222233344444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00041 Score=53.52 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=80.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHH
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLL 281 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 281 (430)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788889999999999999988 33343 3456668888999999999999999999888754 5678889
Q ss_pred HHHHHhccchhHHHHHHHHHHhCC
Q 043370 282 SNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 282 ~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..++...|++++|...++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0022 Score=62.81 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
..|..+.-.....|++++|...+++. ..+|+...|..+...+...|+.++|...+++...++|
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33444433333344444444444444 3334444444444444444455555554444444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.3e-05 Score=55.75 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA-IIWKTLLSACKTHKSTDMAGRIAE 265 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 265 (430)
|+++.|..+++++.+.....|+...+..+..+|.+.|++++|..++++.+..|+. ...-.+..++.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4555555555555543111112223333455555555555555555443222221 222222333444555555555444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0068 Score=57.23 Aligned_cols=249 Identities=12% Similarity=0.065 Sum_probs=157.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc------HhHHHHH
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD------VGVISSL 113 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~l 113 (430)
...+..+.-+..++..|++-+....+.. -+..-++....++...|.+.++...-...++.|-..- ......+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456677777788888888888887754 3444456666777788877777766666655543310 1112224
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 192 (430)
.+.|.+.++++.|+..|.+...+... -....+....++++.......-. .|... -...=.+.+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHH
Confidence 45677778888888888774321000 11122233455555555554432 33331 122235667788999999
Q ss_pred HHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 043370 193 MEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 270 (430)
...|.++++. .+-|...|....-+|.+.|.+..|++=.+.. ...|+ ...|..=..++.-..+++.|.+.|++.++.
T Consensus 378 v~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998875 3457788999999999999998888765554 34453 445655556667778899999999999999
Q ss_pred CCCCChhHHHHHHHHHhccchhHHHHHHH
Q 043370 271 NPQDAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 271 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+|.+...-..+.+++........-.++.+
T Consensus 456 dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred CchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 99776666555555554333333333333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00039 Score=50.54 Aligned_cols=91 Identities=9% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3344455555555566665555555432 223344444455555555555555555555444322 23344444444444
Q ss_pred cCCHHHHHHHHhc
Q 043370 120 CGCLDDSVKTFLE 132 (430)
Q Consensus 120 ~g~~~~A~~~~~~ 132 (430)
.|+.++|...|..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4554444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.03 Score=51.27 Aligned_cols=111 Identities=11% Similarity=0.135 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKT 253 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 253 (430)
.+.+..+.-|...|....|.++-.+. ++ |+..-|-..+.+|+..++|++-.++... +-++.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555666777788887777665444 44 7888899999999999999998887654 2356889999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999998888771 2255677889999999987765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00067 Score=50.33 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCcHhH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGF-RPDKITFVSVISSCSELA--------TLGQGQQIHAEVVKAGASLDVGV 109 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~ 109 (430)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667778888999999999999999999 899999999999887653 23456788999999999999999
Q ss_pred HHHHHHHHHh
Q 043370 110 ISSLISMYSR 119 (430)
Q Consensus 110 ~~~li~~~~~ 119 (430)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=53.78 Aligned_cols=131 Identities=8% Similarity=0.099 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD--KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
....|..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+.+.++... .+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 456778888888899999999999999886542222 35677888888899999999999998887643 256677777
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 188 (430)
..+|...|+...+..-++.. ...+++|.+.+++.... .|+. +..++..+...|.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 88888877766554333221 11256777777777664 3443 5555555544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0025 Score=58.18 Aligned_cols=258 Identities=10% Similarity=-0.007 Sum_probs=161.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
..-..+.+..++.+|+..+....+.. +-+..-|..-+..+...+.++.+.--.++-++.... ......-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34445667777888888888888764 333444555555556666666665544444332111 1222333334444444
Q ss_pred CHHHHHHHHhcc---------------C-----CCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 122 CLDDSVKTFLEC---------------E-----YSDVVLWSSM-IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180 (430)
Q Consensus 122 ~~~~A~~~~~~~---------------~-----~~d~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 180 (430)
+..+|...|+.- . +|-..+|-.+ ..++...|++++|.+.-...++.. ..+......-.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg 210 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcc
Confidence 444444443321 1 1122333332 235667889999988887776653 12222222122
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccCHhH-------------HHHHHHHHhhcCCHHHHHHHHHhC-CCC-----CCH
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEH-------------YTCVVDLLGRCGYLDEAAALIRNM-PVK-----ANA 241 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~ 241 (430)
.++-..++.+.|...|++.+ ...|+-.. +.--..-..+.|.+.+|.+.+.+. .+. |++
T Consensus 211 ~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred cccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 23445678889999988876 34554322 111223345789999999999887 444 556
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..|........+.|+.++|+.--++...++|.-...|..-.+++...++|++|.+-++...+..
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677777778899999999999999999999778888888899999999999999988776543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0024 Score=57.58 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS-CSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888888888888887543 2233444433333 23346777789999888876 56678888888888
Q ss_pred HHhcCCHHHHHHHHhccCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 117 YSRCGCLDDSVKTFLECEYS------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+.+.|+.+.|+.+|+..... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999876532 3357888888888888888888888888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00019 Score=49.44 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc-chhHHHHHHHHHHh
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK-RWQGVSEFREAMRE 303 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 303 (430)
++.+|..+...+...|+++.|+..|++.++.+|.++..|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56778888888999999999999999999999999999999999999999 79999998887654
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00044 Score=64.66 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=85.9
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKS 256 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 256 (430)
-...+...|++++|...|.++++. .+.+...|..+..+|.+.|++++|...++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999864 2336678888999999999999999999988 5556 57778888888999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 257 TDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
++.|...+++.++++|.++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999887766665444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=61.50 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=81.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcC
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCG 223 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 223 (430)
...+...|++++|+++|++.++.. +-+...|..+..++...|++++|...++.+.+. .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 456677899999999999999864 445677888889999999999999999999853 44 6678889999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043370 224 YLDEAAALIRNM-PVKANAIIWKTLL 248 (430)
Q Consensus 224 ~~~~A~~~~~~m-~~~p~~~~~~~ll 248 (430)
++++|...|++. ...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999987 5566544444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=55.18 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...+++..+..|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666666666666655 22221 34566666667777777777777777777777777777777777
Q ss_pred HHhccc
Q 043370 285 HASAKR 290 (430)
Q Consensus 285 ~~~~g~ 290 (430)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 766665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=48.78 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhhcC--------cHHHHHHHHHHHhhhcCCccCHh
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EANDVTFVSLLYACSHCG--------LKEKGMEFFDLMVKKYRRKPRLE 210 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 210 (430)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566666677999999999999999999 899999999998876543 344567788888876 7888888
Q ss_pred HHHHHHHHHhh
Q 043370 211 HYTCVVDLLGR 221 (430)
Q Consensus 211 ~~~~li~~~~~ 221 (430)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0031 Score=56.90 Aligned_cols=132 Identities=13% Similarity=0.213 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA-CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467778888888888888888888887543 2233444433333 333566777999999888753 456677888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888889999999999887 22333 348999999888999999999999998887774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00015 Score=52.21 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGF-RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
+|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455555555555554321 01222333344555555555555555544 222111 22333333444555555555555
Q ss_pred HHh
Q 043370 129 TFL 131 (430)
Q Consensus 129 ~~~ 131 (430)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.006 Score=52.43 Aligned_cols=167 Identities=11% Similarity=0.033 Sum_probs=104.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCC--CH--------HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPIR--NV--------IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
+++|+..+.-..-+++-...|+.-..| .+ ..-++++..+.-.|.+.-.+.++++.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455555555555555555555543322 22 33456666666677788888888888776655667777777
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHh
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLD-----VGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGF 150 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~ 150 (430)
.+.-.+.|+.+.|...|+...+..-..| .-+.-.....|.-.+++.+|...|+++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 7777888888888888886655432222 33333344456666777778888877653 355666655555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
.|+..+|++.++.|++. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 67888888888888775 34444333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00093 Score=55.95 Aligned_cols=99 Identities=11% Similarity=0.142 Sum_probs=80.1
Q ss_pred HHHHHHccC--CCCCHHHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------
Q 043370 24 EGEKVIRLM--PIRNVIAWITLIAGKAQN-----GLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL----------- 85 (430)
Q Consensus 24 ~A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 85 (430)
.-...|++. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345667776 567889999999998865 66777778889999999999999999999977432
Q ss_pred -----CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 86 -----ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 86 -----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
.+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3456688899999999999999999999888877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.023 Score=53.95 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHH
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKAGASL-DVGVISSLISMYSRCGCLDDSVKTFLECEY--S-DVVLWSSMIAAYG 149 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~~~~~~li~~~~ 149 (430)
+|...++..-+..-++.|+.+|.++.+.+..+ ++.+.++++.-|| .++.+-|.++|+--.+ + ++.--+..+.-+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34444444444444555555555555544444 4455555555544 3444555555543221 1 2222233444444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 150 FHGKGEEAINLFEQMEQKEFEAND--VTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
..++-..|..+|++....++.||. ..|..+|..=+.-|++..+.++-+++.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 445555555555555544444432 345555555455555555554444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.055 Score=47.65 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHhccCChHHHHHHHHHHHHcCC
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK-ITF---VSVISSCSELATLGQGQQIHAEVVKAGA 103 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 103 (430)
.+...+-.....+.+.|++++|.+.|+++... -|+. ..- ..+..++.+.+++++|...+++.++..+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34444444556667788888888888888775 3333 222 3455677788888888888888877643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=54.71 Aligned_cols=94 Identities=11% Similarity=-0.078 Sum_probs=72.0
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|+.++|...+++...+.|....++..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777777888888888888876 23232 347788888899999999999999999999888888888888
Q ss_pred HHHH-------hccchhHHHHHHHHH
Q 043370 283 NIHA-------SAKRWQGVSEFREAM 301 (430)
Q Consensus 283 ~~~~-------~~g~~~~a~~~~~~m 301 (430)
..|. ..|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 777877666655543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00034 Score=47.52 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=43.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
...+...|+++.|...++++++..|.++..+..+..++...|++++|...+++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888888888888888888888888877543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0038 Score=58.85 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhH
Q 043370 67 GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA--GASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDVVL 140 (430)
Q Consensus 67 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~ 140 (430)
+.+.+......+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=. =||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667778888888888888888888887777654 222234455689999999999999999987633 378899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 186 (430)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988887777888887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=58.14 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=64.2
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~ 259 (430)
..+.+++++|...|.+.++ +.| +..-|..-..+|.+.|.++.|.+-.+.. .+.|+ ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456677777777777663 344 4455555677777777777776655554 55553 5677777777888888888
Q ss_pred HHHHHHHHhcCCCCCChhHHHH
Q 043370 260 AGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l 281 (430)
|.+.|++.++++|+|......|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888666444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0041 Score=51.46 Aligned_cols=81 Identities=5% Similarity=0.043 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP--DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4566777777778888888888888877543222 12467777777777888888888887777653 22344555555
Q ss_pred HHHH
Q 043370 115 SMYS 118 (430)
Q Consensus 115 ~~~~ 118 (430)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=60.25 Aligned_cols=256 Identities=13% Similarity=0.077 Sum_probs=164.7
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHH--Hc--CCC-CcHhHHHHHHHH
Q 043370 46 GKAQNGLAEDVLDQYNLMRMVGFRPDK----ITFVSVISSCSELATLGQGQQIHAEVV--KA--GAS-LDVGVISSLISM 116 (430)
Q Consensus 46 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~ 116 (430)
-+++.|+....+.+|+..++.| .-|. ..|..|.++|.-.+++++|.++|..=+ .. |-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3789999999999999999887 3343 346667788888899999999876421 11 100 012223345555
Q ss_pred HHhcCCHHHHHHHHh-cc------CCC--CHhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH--
Q 043370 117 YSRCGCLDDSVKTFL-EC------EYS--DVVLWSSMIAAYGFHGK--------------------GEEAINLFEQME-- 165 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~-~~------~~~--d~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 165 (430)
+--.|.+++|.-.-. .+ -.+ ....+..+...|...|+ ++.|.++|.+=+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555666666654321 11 111 22344455666655442 234444444321
Q ss_pred --HCCCC-CCHHHHHHHHHHhhhcCcHHHHHHHHHH---HhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 043370 166 --QKEFE-ANDVTFVSLLYACSHCGLKEKGMEFFDL---MVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM--- 235 (430)
Q Consensus 166 --~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 235 (430)
+.|-. .-...|..|.+.|.-.|+++.|...++. +.+++|-.. ....+..+..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11110 1123566677777778999999887765 334455443 3467888899999999999998887754
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHh----cCC--CCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 236 ----PVK-ANAIIWKTLLSACKTHKSTDMAGRIAEEIL----GVN--PQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 236 ----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
+.+ ....+.-+|...|....+++.|+.++.+-+ +++ .....++.+|.++|...|..++|..+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 322 245567778888888899999999887754 222 2356789999999999999999988766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0053 Score=47.18 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=58.4
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CcHhHHHHHHHHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPD--KITFVSVISSCSELATLGQGQQIHAEVVKAGAS--LDVGVISSLISMYS 118 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~ 118 (430)
+..++-..|+.++|+.+|++....|+... ...+..+.+.+-..|++++|..+++........ .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777777665443 234555666667777777777777776654211 02222233334555
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHH
Q 043370 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAA 147 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~ 147 (430)
..|+.++|.+.+-....++...|.--|..
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665544333333333333333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.022 Score=51.59 Aligned_cols=61 Identities=5% Similarity=-0.045 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRPD-KITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
..|+.....|-..|++++|.+.|.+.... +-+.+ ...|......+ +..++++|.+.+++..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Confidence 35666777788888888888888776431 11111 12233333333 3336666666655543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00039 Score=47.22 Aligned_cols=60 Identities=23% Similarity=0.209 Sum_probs=42.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 215 VVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345666777777777777776 4445 45667777777778888888888888888777754
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.021 Score=51.64 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=61.3
Q ss_pred HHHHHHHhhhc-CcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-----CCHH
Q 043370 176 FVSLLYACSHC-GLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAALIRNMP---VK-----ANAI 242 (430)
Q Consensus 176 ~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p~~~ 242 (430)
+..+...|... |++++|.+.|++..+-+..... ..++..+...+.+.|++++|.++|++.. .. .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444556666 7888888888887654322222 3456777888899999999999998761 11 1222
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 243 -IWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 243 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+-..+-.+...|++..|.+.+++....+|.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1222233466678999999999999888874
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0086 Score=56.53 Aligned_cols=122 Identities=9% Similarity=0.015 Sum_probs=97.3
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCc-cCHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHH
Q 043370 167 KEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK-PRLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAI 242 (430)
Q Consensus 167 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~ 242 (430)
.+.+.+......+++.+....+++++..++.+........ .-..+..++|+.|...|..+++..+++.= |+=||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456678888889999999999999999988886541111 11234459999999999999999999864 8889999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCC-CCCChhHHHHHHHHHhc
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVN-PQDAAPYVLLSNIHASA 288 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 288 (430)
+++.|+..+.+.|++..|.+++..|...+ ..++.++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999887443 45777877767666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00064 Score=59.48 Aligned_cols=86 Identities=16% Similarity=0.119 Sum_probs=76.2
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
-+.+.+++.+|...|.+. .+.| |.+.|..=..+|.+.|.++.|.+-.+..+.++|....+|..|..+|...|++++|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 356789999999999987 7777 66777777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 043370 296 EFREAMRE 303 (430)
Q Consensus 296 ~~~~~m~~ 303 (430)
+.|++-.+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 99886543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.087 Score=48.28 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 191 (430)
.-+.-+...|+...|.++-.+..-||-.-|-..+.+++..++|++-.++... +-.+.-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3345556677777777777777777777777778888888877766654332 1123557777777777777777
Q ss_pred HHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 192 GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 192 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
|..+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777766531 134567777777777776654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0035 Score=52.61 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=71.6
Q ss_pred HHHHhcc--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc-------------
Q 043370 127 VKTFLEC--EYSDVVLWSSMIAAYGF-----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC------------- 186 (430)
Q Consensus 127 ~~~~~~~--~~~d~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 186 (430)
...|+.. ..+|-.+|..++..|.+ .|+.+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677777777777764 467777888888888999999999999998887542
Q ss_pred ---CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 187 ---GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 187 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
.+-+-|.+++++|... |+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2345678888888654 888888888888888877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.13 Score=47.18 Aligned_cols=242 Identities=14% Similarity=0.096 Sum_probs=121.9
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
-.|+++.|.+-|+.|...- .....-...|.-..-+.|+.+.|.+.-+..-..-.. -.....+.+...+..|+++.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHH
Confidence 3456666666666665310 000111122222223455555555555544433211 23444555666666666666666
Q ss_pred HHhccC-----CCCHh--HHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhhcCcHHHHHHHHH
Q 043370 129 TFLECE-----YSDVV--LWSSMIAAYG---FHGKGEEAINLFEQMEQKEFEANDVT-FVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 129 ~~~~~~-----~~d~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
+.+.-. ++|+. .-..|+.+-. -.-+...|.+.-.+..+ +.||-+- -.....++.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 665422 23321 1111222111 12234444444433333 3455332 2233456677777777777777
Q ss_pred HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 198 LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 198 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.+-+. .|....+.. ..+.+.|+.. .+-+++. .++| |..+--++..+....|++..|..-.+......|
T Consensus 288 ~aWK~---ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAWKA---EPHPDIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHhc---CCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 77653 444443322 2234445422 2222221 2344 455556666677778888888888777777777
Q ss_pred CCChhHHHHHHHHH-hccchhHHHHHHHHHH
Q 043370 273 QDAAPYVLLSNIHA-SAKRWQGVSEFREAMR 302 (430)
Q Consensus 273 ~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 302 (430)
....|..|.+.-. ..|+-.++...+.+-.
T Consensus 361 -res~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 361 -RESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred -hhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 6677777777664 4477777777666544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.023 Score=55.77 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
..|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344443333344555555555555542 2344555555555555555555555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00032 Score=48.10 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=36.4
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 252 KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...|+++.|...++++...+|.+...+..++.+|.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777777777766543
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.059 Score=44.11 Aligned_cols=133 Identities=8% Similarity=-0.020 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHHHH
Q 043370 169 FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP-VKA---NAIIW 244 (430)
Q Consensus 169 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 244 (430)
..|+...-..|..+....|+..+|...|++.... -..-|......+.++....+++.+|...++++. -.| ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666677788888888888888888887652 234466677777777778888888888887762 111 22233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 245 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
-.+...+...|+...|+..|+.....-| ++..-......+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3455668888999999999999888777 566656666777888888877766555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.04 Score=48.51 Aligned_cols=180 Identities=9% Similarity=0.021 Sum_probs=106.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-HhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEY--SD-VVL---WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
+....-.....+.+.|++++|.+.|+++.. |+ ... .-.++.+|.+.+++++|...|++..+.-..-...-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 344444456666778888888888888753 22 222 234566778888888888888888775211112233333
Q ss_pred HHHhhh--cC---------------c---HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043370 180 LYACSH--CG---------------L---KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239 (430)
Q Consensus 180 l~a~~~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 239 (430)
+.+.+. .+ + ..+|...|+.+++ -|-.+.-..+|..-+..+..+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH
Confidence 333321 10 1 1233344444443 3333334444544443332110
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC---CChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ---DAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
-..-+ .+..-|.+.|.+..|..-++.+++.-|. .+.+...+..+|...|..++|..+...+.
T Consensus 175 a~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01111 2334488899999999999999987775 44566788899999999999998887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.066 Score=43.80 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=70.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHH
Q 043370 104 SLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE---FEANDVTF 176 (430)
Q Consensus 104 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 176 (430)
.|+......|.+...+.|+..+|...|++.. ..|....-.+.++....+++.+|..+++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4555555666666666666666666666543 2355555555666666666777777766665542 2233 23
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
..+..++...|...+|..-|+....- -|+...-.-....+.+.|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 34455666666676677666666543 3454444444455566666555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0068 Score=53.44 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=84.3
Q ss_pred ccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHHHHHHHHhcCCCCCChhHHH
Q 043370 206 KPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT---HKSTDMAGRIAEEILGVNPQDAAPYVL 280 (430)
Q Consensus 206 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 280 (430)
+-|.+.|-.|...|.+.|+++.|..-|.+. .+.| |...+..+..++.. .....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 458899999999999999999999999887 3443 56666666666322 235678899999999999999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 281 LSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 281 l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
|...+...|++.+|...|+.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.3 Score=49.52 Aligned_cols=212 Identities=13% Similarity=0.130 Sum_probs=139.8
Q ss_pred HcCChHHHHHHHccCCC--CCHHHHHHHHHH--HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043370 18 KSGSLVEGEKVIRLMPI--RNVIAWITLIAG--KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQ 93 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~--~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 93 (430)
..+++..|....+++.+ ||. .|...+.+ ..+.|+.++|..+++.....+.. |..|...+-..|-..++.+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45778888877776653 443 34444444 46889999999998888766533 88899999999999999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHhccCCCCHhHHHHHHHHHHhc-CC---------hHHHHH
Q 043370 94 IHAEVVKAGASLDVGVISSLISMYSRCGCLDD----SVKTFLECEYSDVVLWSSMIAAYGFH-GK---------GEEAIN 159 (430)
Q Consensus 94 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~d~~~~~~li~~~~~~-g~---------~~~A~~ 159 (430)
+|++.... -|+......+..+|.+.+++.+ |.++++..++.--..|+. ++.+.+. .. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHH
Confidence 99999875 4567788888889999887754 666777666555455553 3333332 11 224555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHH-HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 160 LFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFD-LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 160 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.++.+.+.+-+. +..-...-+......|..++|.+++. ...+. -...+...-+--++.+...+++.+..++-.++
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 666666554122 12222222334567888999999984 33332 22223344456678888889988877766555
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.036 Score=53.68 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=150.5
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC-----------CCCHHHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCC
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP-----------IRNVIAWITLIAGKAQNGL--AEDVLDQYNLMRMVGFRP 70 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 70 (430)
|..+.+++=+.-|...|.+++|.++=---. .-+...++.-=.+|.+-.+ +-+.+.-+++|++.|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334445566677888888888876521111 1123344445566665544 445556677888888778
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-------CHhHH--
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-------DVVLW-- 141 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------d~~~~-- 141 (430)
+.... ...|+-.|.+.+|.++|.+ .|.+ |.-+.+|.....+|.|.++....... .-..|
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 87653 4556778899999988854 5544 34567777777777777777543210 01111
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHH------HHHCCCC---CCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc
Q 043370 142 -----SSMIAAYGFHGKGEEAINLFEQ------MEQKEFE---ANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP 207 (430)
Q Consensus 142 -----~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 207 (430)
.+....+...|+.++|..+.-+ +.+.+-+ .+..+...+...+-+...+..|-++|.+|-+.
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----- 776 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----- 776 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence 1223344555666666554321 1111112 23345555555556677788888899888432
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHH-----------HHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNMP-VKANAII-----------WKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-----------~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
..++++....+++++|..+-++.| +.||+.. +.-.-.+|.+.|+-.+|.++++++.
T Consensus 777 -----ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 777 -----KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred -----HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 457888999999999999999984 3444332 2234456888999999999999886
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=45.40 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..|...++++.|.+++++++.++|.++..+.....++...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457778888888888888888888888888888888888888888888888876543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.017 Score=44.40 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=64.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHh
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKEFEAN--DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLG 220 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 220 (430)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677778999999999999988876654 34566777888889999999999988876532111 1222233344667
Q ss_pred hcCCHHHHHHHHHh
Q 043370 221 RCGYLDEAAALIRN 234 (430)
Q Consensus 221 ~~g~~~~A~~~~~~ 234 (430)
..|+.++|...+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888877654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.067 Score=49.56 Aligned_cols=160 Identities=17% Similarity=0.075 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYS---D----VVLWSSMIAAYGF---HGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~---d----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
...|+-.|....+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.+++.||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 335555688888888888888887643 1 1111223445556 78888888888886655567777777776
Q ss_pred HHHhhh---------cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHH----HHHHHH---HhC----C---
Q 043370 180 LYACSH---------CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLD----EAAALI---RNM----P--- 236 (430)
Q Consensus 180 l~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~--- 236 (430)
...|-. ...+++|...|.+.- .+.|+..+--.++-.+...|.-. +..++- ..+ +
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 665532 223566666666542 44555444333333343333311 111111 110 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 237 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
-..|--.+.+++.++.-.|+.+.|.+..+++..+.|
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 112333445666666677777777777777766655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0038 Score=50.15 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=74.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHH
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 294 (430)
--+-..|++++|..+|+-+ -..| |..-|..|...+...++++.|...|.....++++|+..+.....+|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3345789999999999877 2223 5667888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 043370 295 SEFREAMRE 303 (430)
Q Consensus 295 ~~~~~~m~~ 303 (430)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998755
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0035 Score=43.00 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHc
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKA 101 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~ 101 (430)
+...|..+...+.+.|++++|+..|.+.++.. +-+...|..+..++...| ++++|.+.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35567777777777777777777777776653 334556666666677776 577777777766653
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0038 Score=42.63 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=21.4
Q ss_pred cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555544432 1113344444445555555555555555444
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.3 Score=48.46 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043370 170 EANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLS 249 (430)
Q Consensus 170 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 249 (430)
.-...|.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+... .+.-|.-+..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3445566666777888899999988876653 4788888888999999999999999888764 3566778899
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+|.+.|+.++|.+++.+..++. -...+|.+.|++.+|.+.--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999887643221 567889999999998877544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.25 Score=42.84 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC-hHHH-HHHHHHHHH-cCCCCcHhHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC-SELAT-LGQG-QQIHAEVVK-AGASLDVGVISS 112 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~-~~~a-~~~~~~~~~-~g~~~~~~~~~~ 112 (430)
...|+.-+.++++...+++|..-+.-.-+.+ .||-+ |-.-=..+ .+.|. +.=+ +-+|.++.. .|.+ +++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnp-----qes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNP-----QES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCc-----HHH
Confidence 4556666777777777777766555544332 22211 00000000 11121 1112 233444433 2222 556
Q ss_pred HHHHHHhcCCHHHHHHHHhccC--CCCHh--------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 113 LISMYSRCGCLDDSVKTFLECE--YSDVV--------LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~--~~d~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
|...|.-..-+++-...|+.-. +..+. .-+.++..+.-.|.+.-.+.++++..+..-+-++.....|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 6666655555555555554322 22233 3355666677778888899999999887656677778888888
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHH-----HHHHhhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcC
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCV-----VDLLGRCGYLDEAAALIRNMPVK-A-NAIIWKTLLSACKTHK 255 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~ll~~~~~~~ 255 (430)
-.+.|+.+.|..+|+...+. .-..+..+.+.+ ...|.-++++.+|...+.+++.. | |+..-|.-.-...-.|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88999999999999977665 223333333333 33455667888888888887432 2 3444443333344568
Q ss_pred ChhHHHHHHHHHhcCCCC
Q 043370 256 STDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~ 273 (430)
+..+|.+..+.+.+..|.
T Consensus 301 ~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHhccCCc
Confidence 888899999999888884
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0097 Score=52.88 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLLS 282 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 282 (430)
.|..-+..+.+.|++++|...|+.+ ...|+ ...+-.+...|...|+++.|...|+.+....|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666555 22232 1344445555666666666666666666555543 33444455
Q ss_pred HHHHhccchhHHHHHHHHHHh
Q 043370 283 NIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.++...|++++|..+++.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 566666666666666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.026 Score=45.40 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH-----hCCCCCCC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR-----ERNVKKEP 310 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 310 (430)
.....++..+...|+++.|...++.+...+|.+...|..++.+|...|+..+|.++|+.+. +.|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 3455677778899999999999999999999999999999999999999999999999875 35666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.023 Score=44.20 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 169 FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 169 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
..|+..+..+++.+|+..|++..|.++.+.+.+.|+++.+...|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45666666666666666666666666666666666655555566555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0067 Score=42.07 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=44.8
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
..|.+.+++++|.++++.+ ...| +...|......+...|+++.|...+++..+..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4677778888888888877 4445 45566667677888888888888888888888855443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.044 Score=48.73 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKA-NAIIWKTLL 248 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll 248 (430)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555777777777777765532111 1235556677777777777777777766 2211 233444455
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
..+...|+.+.|...++++.+..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 557778888888888888888888543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.34 Score=47.81 Aligned_cols=129 Identities=10% Similarity=0.028 Sum_probs=71.6
Q ss_pred ChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH-CCCCC--------CHHHHHHHHHHHhccCChHHH
Q 043370 21 SLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRM-VGFRP--------DKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 21 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p--------~~~t~~~ll~~~~~~g~~~~a 91 (430)
.+++|.+..+.- |.+..|..|...-.+.-.++.|...|-+... .|++. +...-.+=+. +-.|.+++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 356666666654 4456787777666666666666666655432 12211 0001111122 234788888
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHhHHHHHHHHHHhcCChHHHHHHHH
Q 043370 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-----DVVLWSSMIAAYGFHGKGEEAINLFE 162 (430)
Q Consensus 92 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~ 162 (430)
+++|-.+-++. .-|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|.
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887665543 2366777777777777777653321 12455555555555555555555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.18 Score=43.07 Aligned_cols=48 Identities=8% Similarity=-0.092 Sum_probs=33.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhccchhHHH
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDA---APYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 295 (430)
..-|.+.|.+..|..-++.+++.-|+.+ .+...|+.+|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3447888888888888888888777533 34567788888888877443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.36 Score=41.21 Aligned_cols=61 Identities=7% Similarity=-0.083 Sum_probs=36.7
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGF--RPDKITFVSVISSCSELATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 102 (430)
.....+.+.|++.+|.+.|+++...-. +--......++.++.+.|+++.|...++..++.-
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345556677778888888777776421 1112344556667777777777777777776653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0014 Score=37.79 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 264 AEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 264 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
+++.++++|+++.+|..|..+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888999999999999999999999999986
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.025 Score=43.93 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHh--------------hhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 043370 173 DVTFVSLLYACSHCGLKEKGMEFFDLMV--------------KKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--- 235 (430)
Q Consensus 173 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 235 (430)
..++..++.++++.|+++....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555555555555555554332 11133444555555555555555555555544433
Q ss_pred -CCCCCHHHHHHHHHH
Q 043370 236 -PVKANAIIWKTLLSA 250 (430)
Q Consensus 236 -~~~p~~~~~~~ll~~ 250 (430)
++.-+..+|..|+.=
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333334445444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0042 Score=38.24 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
.+|..+...|...|++++|.++++++++.+|+|+..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778888999999999999999999999988888877653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.84 Score=42.05 Aligned_cols=264 Identities=11% Similarity=0.042 Sum_probs=171.6
Q ss_pred ChHHHHHHHccCCCCCHHHHHHHHHHHHH--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCChHHHHHHHH
Q 043370 21 SLVEGEKVIRLMPIRNVIAWITLIAGKAQ--NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS--ELATLGQGQQIHA 96 (430)
Q Consensus 21 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~ 96 (430)
....+.+.|..-+. -.-|.+|-.++.. .|+-..|.++-.+-.+. +..|......++.+-. -.|+++.|++-|+
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34556666655332 2357777777665 46777777766655432 4556666666665543 4599999999999
Q ss_pred HHHHcCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CC
Q 043370 97 EVVKAGASLDVGV--ISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FE 170 (430)
Q Consensus 97 ~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 170 (430)
.|... |.... ...|.----+.|+.+.|+.+-+.... .-.-.|.+.+...+..|+|+.|+++.+.-+... +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 99862 22221 22233334578899998888776542 245678899999999999999999999876543 45
Q ss_pred CCHHH--HHHHHHHhh---hcCcHHHHHHHHHHHhhhcCCccCHhHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH
Q 043370 171 ANDVT--FVSLLYACS---HCGLKEKGMEFFDLMVKKYRRKPRLEHY-TCVVDLLGRCGYLDEAAALIRNM-PVKANAII 243 (430)
Q Consensus 171 p~~~t--~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 243 (430)
++..- -..|+.+-. -..+...|...-.+.. .+.|+..-- ..-..+|.+.|++.++-.+++.+ +..|.+.+
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 55432 223333321 1234555665554443 456765332 33467889999999999999999 66788877
Q ss_pred HHHHHHHHHhcCChhHHHHHH---HHHhcCCCCCChhHHHHHHHHHhccchhHHHHH
Q 043370 244 WKTLLSACKTHKSTDMAGRIA---EEILGVNPQDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~---~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
|...+ ..+.|+ .++.-+ +++..+.|+|..+-..+..+-...|++..|..-
T Consensus 299 a~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 299 ALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred HHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 75433 334444 333333 444577899999998999988888888776543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.02 Score=53.85 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=64.8
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANA----IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
+...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4567788888888888888888888875 666653 35778888888888888888888888876321 222111
Q ss_pred H--HHHhccchhHHHHHHHHHHhCCCC
Q 043370 283 N--IHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 283 ~--~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
. .+....+.++..++++..++-|.+
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445667777777777754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.033 Score=44.74 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=66.4
Q ss_pred chhHHHHHHHH---HHHcCChHHHHHHHccCCC----------C---------------CHHHHHHHHHHHHHCCChhHH
Q 043370 5 DLVAGSSLAHM---YMKSGSLVEGEKVIRLMPI----------R---------------NVIAWITLIAGKAQNGLAEDV 56 (430)
Q Consensus 5 ~~~~~~~li~~---~~~~g~~~~A~~~f~~m~~----------~---------------~~~~~~~li~~~~~~g~~~~A 56 (430)
|+..+..++.. ....|+.+.+...++++.. + -......++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 44455555433 3456777777666655421 0 112345566677788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-----HcCCCCcHhHH
Q 043370 57 LDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV-----KAGASLDVGVI 110 (430)
Q Consensus 57 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-----~~g~~~~~~~~ 110 (430)
+.+.+.+.... +-|...|..++.++...|+...|.+.|+.+. +.|++|+..+-
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 99999988764 5678888999999999999999998888764 35888876654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.088 Score=46.62 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc---CCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043370 172 NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC---GYLDEAAALIRNM-PVKAN-AIIWKT 246 (430)
Q Consensus 172 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m-~~~p~-~~~~~~ 246 (430)
|...|..|..+|...|+.+.|..-|.+..+-. .++...+..+..++..+ ..-.++.++|+++ ..+|+ +.+-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 34445555555555555555555555444321 12233333333333221 1233455555554 33343 233333
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
|...+...|++.+|...++.|++..|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 33345666666666666666665555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.052 Score=47.40 Aligned_cols=100 Identities=12% Similarity=0.125 Sum_probs=80.7
Q ss_pred HHHHHHccCC--CCCHHHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------
Q 043370 24 EGEKVIRLMP--IRNVIAWITLIAGKAQN-----GLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL----------- 85 (430)
Q Consensus 24 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 85 (430)
...+.|...+ ++|-.+|-+++..|... +..+-.-..++.|.+.|+..|..+|+.|++.+-+-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456777777 78999999999888764 45666667788999999999999999999977443
Q ss_pred -----CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 86 -----ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 86 -----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
.+-+-++.++++|...|+-||-.+-..|++++.+.|-.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22344778999999999999999999999999888753
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.88 Score=47.79 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=42.0
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTD 258 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 258 (430)
.+.+|..+|++++|..+..++.. +-..-..+-..|+.-+...++.-+|-++..+..-.|.. .+..+++...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHH
Confidence 34556666666666666655532 11111223345666666666666666666655323221 222345555566
Q ss_pred HHHHHHHHH
Q 043370 259 MAGRIAEEI 267 (430)
Q Consensus 259 ~a~~~~~~~ 267 (430)
+|.++....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 666665543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.091 Score=42.39 Aligned_cols=84 Identities=6% Similarity=-0.057 Sum_probs=37.5
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS 126 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 126 (430)
+-+.|++++|..+|+-+...+ .-|..-+..|..++-..+++++|...|......+.. |+...--...+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 445555555555555554433 223333344444444445555555555544333221 222233344444455555555
Q ss_pred HHHHhc
Q 043370 127 VKTFLE 132 (430)
Q Consensus 127 ~~~~~~ 132 (430)
+..|+.
T Consensus 125 ~~~f~~ 130 (165)
T PRK15331 125 RQCFEL 130 (165)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.017 Score=40.60 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
++..+...+...|++++|.+++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555444
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.56 Score=43.45 Aligned_cols=253 Identities=13% Similarity=0.039 Sum_probs=144.9
Q ss_pred HHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH
Q 043370 15 MYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD-KITFVSVISSCSELATLGQ 90 (430)
Q Consensus 15 ~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 90 (430)
.+.+..++.+|+..+.... ..++.-|..-...+..-|++++|+--.+.-.+. +|. .....-.-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 3344445555555544322 234555666666677777888777665554432 111 1122223333333333333
Q ss_pred HHHHHH---------------HHHHcCC-CCcHhHHHHH-HHHHHhcCCHHHHHHHHhccCCCCHh-HHHHHHH--HHHh
Q 043370 91 GQQIHA---------------EVVKAGA-SLDVGVISSL-ISMYSRCGCLDDSVKTFLECEYSDVV-LWSSMIA--AYGF 150 (430)
Q Consensus 91 a~~~~~---------------~~~~~g~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~d~~-~~~~li~--~~~~ 150 (430)
|.+.++ .+..... +|....+-.| ..++.-.|+.++|.++--.+.+.|.. .+...+. ++--
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc
Confidence 333322 1111111 1222233222 45667778888888876665544332 2333333 3344
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHhhhcCcHHHHHHHHHHHhhh--cCCccCHhHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSL-------------LYACSHCGLKEKGMEFFDLMVKK--YRRKPRLEHYTCV 215 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------------l~a~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l 215 (430)
.++.+.|...|++-++. .|+...-..+ .+-..+.|.+..|.+.|.+.+.. .++.|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 67889999999998875 4665433322 12234679999999999988732 1233445667777
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhcCCC
Q 043370 216 VDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSA--CKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.....+.|++++|..--++. .+. +..++..+..+ +...++++.|.+-++...+...
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77788999999999887766 443 23444444444 5667899999999999887665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.087 Score=48.51 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=85.3
Q ss_pred HHHHHcCChHHHHHHHccCCC------------------CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHH
Q 043370 14 HMYMKSGSLVEGEKVIRLMPI------------------RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75 (430)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 75 (430)
+.|.+.|++..|..-|++... .-+.+++.|..+|.+.+++.+|+...++.+..+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 468889999999888776320 123567778888889999999999988888876 6677777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH-HHHHhcc
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS-VKTFLEC 133 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 133 (430)
---..++...|+++.|+..|+.+++..+. |-.+.+.|+.+--+.....+. .++|..|
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888889999999999988886433 556666666665555544433 4444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.013 Score=41.23 Aligned_cols=20 Identities=10% Similarity=0.373 Sum_probs=7.2
Q ss_pred HHHHhhhcCcHHHHHHHHHH
Q 043370 179 LLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~ 198 (430)
+...|...|++++|...|++
T Consensus 11 la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 11 LARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.9 Score=42.31 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=85.6
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVG---FRPDKITFVSVISSCSE---LATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
.|+-+|-...+++.-+++.+.|.... +.-....--...-|+.+ .|+.++|.+++..++...-.+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 45555777777777777777776531 11111111122333444 6777777777777555555666777766666
Q ss_pred HHHh---------cCCHHHHHHHHhccCCCCHhHHH--HHHHHHHhcCC----hHHHHHHH---H-HHHHCC---CCCCH
Q 043370 116 MYSR---------CGCLDDSVKTFLECEYSDVVLWS--SMIAAYGFHGK----GEEAINLF---E-QMEQKE---FEAND 173 (430)
Q Consensus 116 ~~~~---------~g~~~~A~~~~~~~~~~d~~~~~--~li~~~~~~g~----~~~A~~~~---~-~m~~~g---~~p~~ 173 (430)
.|-. ...+++|...|.+.-+-+...|+ .+...+...|. -.+..++- . .+.+.| -..|-
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 5531 22467777777654322221121 11111112222 11222222 1 122233 23445
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
..+.+++.++.-.|+.+.|.+..++|.+
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 6667788888888899999888888875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.99 Score=38.36 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=36.3
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 219 LGRCGYLDEAAALIRNM-PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
+...++.++|...+... ...++ ...+..+...+...++.+.|...+.......|.....+..+...+...+.++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 33444444444444443 22222 3344444444444445555555555555444432333333333333444444444
Q ss_pred HHHHHH
Q 043370 296 EFREAM 301 (430)
Q Consensus 296 ~~~~~m 301 (430)
..+...
T Consensus 257 ~~~~~~ 262 (291)
T COG0457 257 EALEKA 262 (291)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.24 Score=45.69 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=78.2
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
..++..|.-+|.+.+.+.+|+..-+.. ... +|+...-.=..+|...|+++.|...|+++++++|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346777888899999999999888776 333 466666666778999999999999999999999999888888888887
Q ss_pred hccchhHH-HHHHHHHHhC
Q 043370 287 SAKRWQGV-SEFREAMRER 304 (430)
Q Consensus 287 ~~g~~~~a-~~~~~~m~~~ 304 (430)
+...+.+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77776664 7889988653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.082 Score=49.81 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH----hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 170 EANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL----EHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 170 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+.+...++.+..+|...|++++|...|++.++ +.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33567888999999999999999999999874 45653 35888999999999999999998886
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.6 Score=42.86 Aligned_cols=252 Identities=14% Similarity=0.105 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHCCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHhccCChHH--HHHHHHHHHHcCCCCc
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQY---------NLMRMVGFRPDKITFVSVISSCSELATLGQ--GQQIHAEVVKAGASLD 106 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~~~~~~~~~g~~~~ 106 (430)
+.+.+=+..|...|.+++|.++- +.+... ..+...++..=.+|.+..+..- -..-++++.+.|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 44555566788889888886642 222211 1133345555566666555433 3334556777887777
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHhHHHH-----HHHHHHhcCChHHHHHHHHHHHH--CCC-CCCHHHH
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECEYS--DVVLWSS-----MIAAYGFHGKGEEAINLFEQMEQ--KEF-EANDVTF 176 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--d~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~--~g~-~p~~~t~ 176 (430)
... +.+.++-.|++.+|-++|.+--.. -...|+- ..+-|...|..++-..+.++--+ .++ .|-.
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka--- 708 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA--- 708 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---
Confidence 654 455667788899999998875432 2222322 23445566666665555554221 111 2221
Q ss_pred HHHHHHhhhcCcHHHHHHHHH---------HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFD---------LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTL 247 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~---------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 247 (430)
....+..+|+.++|..+.. .+..+ -...+.++...+..-+.+...+.-|-++|.+|+.. .++
T Consensus 709 --AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksi 779 (1081)
T KOG1538|consen 709 --AAEMLISAGEHVKAIEICGDHGWVDMLIDIARK-LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSL 779 (1081)
T ss_pred --HHHHhhcccchhhhhhhhhcccHHHHHHHHHhh-cchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHH
Confidence 2222334455555544321 11111 01124455555555666777888899999999632 245
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCh----------hHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAA----------PYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
+......+++++|..+.++.-+..|+-.- -|.---.+|.++|+-.+|.++++++....+
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 55667889999999999987766653221 234455688999999999999999876544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.15 Score=44.70 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=81.3
Q ss_pred HHHHHHhccC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC----------
Q 043370 125 DSVKTFLECE--YSDVVLWSSMIAAYGFH-----GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG---------- 187 (430)
Q Consensus 125 ~A~~~~~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 187 (430)
-.++.|.... ++|-.+|-+++..+... ++.+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 67888999999888654 567777788899999999999999999999876532
Q ss_pred ------cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHH
Q 043370 188 ------LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLD 226 (430)
Q Consensus 188 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 226 (430)
+-+-+.+++++|.. +|+.||-++-..|+.++++.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23457889999965 599999999999999999988643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.1 Score=40.42 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=60.5
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 228 AAALIRNMPVKA----NAIIWKTLLSA--CKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 228 A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
-+.++++.++.| +...-|.|-.| +..+|++.++.-.-.-+.++.| ++.+|..++-+.....++++|..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344555556554 45567777777 6789999999999999999999 9999999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.7 Score=39.26 Aligned_cols=240 Identities=14% Similarity=-0.003 Sum_probs=153.6
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcC
Q 043370 27 KVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL----GQGQQIHAEVVKAG 102 (430)
Q Consensus 27 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----~~a~~~~~~~~~~g 102 (430)
.+++.+..+|....-..+.++.+.|. .++...+..+.. .+|...-...+.++++.|+. +++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 34444567788788888888887775 445555555654 34667777777788888763 4566666665333
Q ss_pred CCCcHhHHHHHHHHHHhcCCH-----HHHHHHHhc-cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043370 103 ASLDVGVISSLISMYSRCGCL-----DDSVKTFLE-CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176 (430)
Q Consensus 103 ~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 176 (430)
.++..+....+.++...+.- ..+...+.. +..++...-...+.++.+.|+ ++|+..+-.+.+. +|...-
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR 176 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVR 176 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHH
Confidence 45666776666666665421 233444433 345566666777888888876 5677777777763 455555
Q ss_pred HHHHHHhhhcC-cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043370 177 VSLLYACSHCG-LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255 (430)
Q Consensus 177 ~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 255 (430)
...+.++.+.+ ....+...+..+..+ ++..+...-+.++++.|+..-.-.+++.+. .++ .....+.++...|
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcC
Confidence 56666666653 234566666666543 567777888889999998554444455544 234 3446778888888
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
.. .|...+.++.+.+| |...-..-+.++
T Consensus 250 ~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 85 68888888888777 555544444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.43 Score=42.95 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=91.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH----HhhcCCHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL----LGRCGYLD 226 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~ 226 (430)
.|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+..+|.-+-.+ +..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 46666666677777665 455556666666677777777777777777664 234555444443333 34567777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC----CCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 227 EAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP----QDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 227 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+|++.-++. .++| |.-.-.++...+...|+..++.+...+-...=. .-...|-...-.+...+.++.|.++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777665 4443 444455555556667777777766655432111 0123344445555666777777777765
Q ss_pred HHhCCCCCCC
Q 043370 301 MRERNVKKEP 310 (430)
Q Consensus 301 m~~~g~~~~~ 310 (430)
=.-..+.++.
T Consensus 273 ei~k~l~k~D 282 (491)
T KOG2610|consen 273 EIWKRLEKDD 282 (491)
T ss_pred HHHHHhhccc
Confidence 4443444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.6 Score=38.76 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=93.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
.......|+..+|..+|....... +-+...-..+..++...|+.+.|..++..+..+. -.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhc
Confidence 345566788888888888777653 2234455567777788888888888888765431 11111112234555556655
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC--CCCChhHHHHHHHHHhccchhH-HHHHHHH
Q 043370 225 LDEAAALIRNMPVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN--PQDAAPYVLLSNIHASAKRWQG-VSEFREA 300 (430)
Q Consensus 225 ~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 300 (430)
..+..++-.+..-.| |...--.+...+...|+.+.|...+-.+++.+ -.|...-..|+..+...|.-+. +.+.+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555554455 55555566666777888888877766666443 3466667777777776664333 3333333
Q ss_pred H
Q 043370 301 M 301 (430)
Q Consensus 301 m 301 (430)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.4 Score=38.47 Aligned_cols=68 Identities=4% Similarity=-0.047 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVG--FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS 104 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 104 (430)
+..|-.=+..-.+.|++++|.+.|+.+...- -+-...+...++-++.+.+++++|....++.++.-+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 4444445555678999999999999998652 1223456667778888999999999999988876443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.69 Score=44.55 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=25.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+...|..|.+...+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 344555555555555555555555554432 333444444445444444444444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.5 Score=37.20 Aligned_cols=222 Identities=13% Similarity=0.048 Sum_probs=154.2
Q ss_pred CCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGFR-PDKITFVSVISSCSELATLGQGQQIHAEVVKA-GASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666654322 13566777777777888888888887777652 33445667777788888888888888
Q ss_pred HHHhccCC--C-CHhHHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 128 KTFLECEY--S-DVVLWSSMIA-AYGFHGKGEEAINLFEQMEQKEF--EANDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 128 ~~~~~~~~--~-d~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
+.+..... + +......... .+...|+++.|...|.+...... ......+......+...++.+.+...+....+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 88887653 2 2223333333 78889999999999999865321 12334444444556778899999999999875
Q ss_pred hcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 202 KYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 202 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
. ... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3 233 3677888888899999999999988887 44454 445555555555777899999999999988884
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.34 E-value=1 Score=43.34 Aligned_cols=162 Identities=16% Similarity=0.094 Sum_probs=103.9
Q ss_pred HHHHHCCChhHHHHHHH--HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 45 AGKAQNGLAEDVLDQYN--LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
....-.++++++.++.+ ++.. .++ ..-.+.++.-+.+.|..+.|.++-.. +. .-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 44566788888877765 2221 122 44577788888888988888876543 21 23566788999
Q ss_pred HHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 123 ~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+... |..|+-.|.-.|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999988766 677999999999999999999999987543 455666677778877766666555443
Q ss_pred cCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043370 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239 (430)
Q Consensus 203 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 239 (430)
| -++....++.-.|+.++..+++.+.+.-|
T Consensus 403 -~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 403 -G------DINIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred -c------CHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 2 23444455556688888888777765433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.38 Score=45.06 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=96.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECE-----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVT-FVSLL 180 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll 180 (430)
..+|..+++.-.+..-++.|+.+|-+.. .+++..++++|.-++ .|++.-|.++|+.=... -||... -.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777777777888888887654 357777888887766 47777888888765443 344333 33455
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccC--HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPR--LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHK 255 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~ 255 (430)
.-+...++-+.|..+|+..+.+ +..+ ...|..+|+-=..-|++..|..+=+++ ..-|...+-..+.+.|....
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 5666778888888888866553 3333 467888888778888888887776666 33355555555555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.3 Score=43.28 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=106.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKE-FEAND-----VTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEH 211 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~ 211 (430)
..+++...-.||-+.+++++.+-.+.+ +.-.. .+|..++..++. ....+.|.+++..+.++ -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 345556666899999999998876533 22111 233344433332 45788899999999875 366665
Q ss_pred HHHH-HHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH-HH
Q 043370 212 YTCV-VDLLGRCGYLDEAAALIRNMPV-K-----ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL-SN 283 (430)
Q Consensus 212 ~~~l-i~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~ 283 (430)
|... ...+...|++++|.+.|++.-. + .....+--+.-.+....++++|...+.++.+.+..+...|.-+ ..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5543 5666788999999999997521 1 1222333344457778899999999999998876566666554 44
Q ss_pred HHHhccch-------hHHHHHHHHHHh
Q 043370 284 IHASAKRW-------QGVSEFREAMRE 303 (430)
Q Consensus 284 ~~~~~g~~-------~~a~~~~~~m~~ 303 (430)
++...|+. ++|.+.+++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 45677877 788888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.3 Score=38.37 Aligned_cols=117 Identities=9% Similarity=-0.014 Sum_probs=58.1
Q ss_pred HHcCChHHHHHHHccCCC------CC------HHHHHHHHHHHHHCCChhHHHHHHHHHHHC--------CCCCCH----
Q 043370 17 MKSGSLVEGEKVIRLMPI------RN------VIAWITLIAGKAQNGLAEDVLDQYNLMRMV--------GFRPDK---- 72 (430)
Q Consensus 17 ~~~g~~~~A~~~f~~m~~------~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~---- 72 (430)
.+.|+++.|...+.+.+. |+ ...||.-...+.+..++++|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467888888888877652 21 134554444443333777776666655332 122222
Q ss_pred -HHHHHHHHHHhccCChH---HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 73 -ITFVSVISSCSELATLG---QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 73 -~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
.++..++.++...+..+ +|..+.+.+.... +..+.++..-+..+.+.++.+++.+++.+|.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 23344555555444433 3344444443322 2123444344455555556666666665554
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.2 Score=37.99 Aligned_cols=137 Identities=11% Similarity=0.090 Sum_probs=83.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-HhHH---HHHHHHHHhcCChHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD-VVLW---SSMIAAYGFHGKGEE 156 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d-~~~~---~~li~~~~~~g~~~~ 156 (430)
.....|++.++..+++........ +..+.-.|..+|...|+.+.|..+++.++... ...| .+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345678899999999988876544 56677788999999999999999999887431 1112 223344444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHh
Q 043370 157 AINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLG 220 (430)
Q Consensus 157 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 220 (430)
...+-++.-.. +-|...-..+...+...|+.++|.+.+-.+.++..-.-|...-..|++.+.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 44444444332 224455556666777778888877766655543222223344444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.4 Score=40.58 Aligned_cols=143 Identities=14% Similarity=0.080 Sum_probs=74.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
+|.-..+..++..-+++-++.++. .||-.+.-.++. --......++++++++.++.|-.. .-...... ..|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~--lg~s~~~~---~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEAS--LGKSQFLQ---HHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHh--hchhhhhh---cccc
Confidence 344444566666666666666653 455444333322 122345678888888877654210 00000000 0111
Q ss_pred HHHHHHHHhccCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 123 LDDSVKTFLECEYSD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA--NDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 123 ~~~A~~~~~~~~~~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
..+....+| +..-.-+..+.-+.|+.+||++.|++|.+.. ++ +......|+.++...+...++..++
T Consensus 246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 111111222 2222335556667788888888888887642 22 2335566777888888888888777
Q ss_pred HHHh
Q 043370 197 DLMV 200 (430)
Q Consensus 197 ~~~~ 200 (430)
.+-.
T Consensus 319 ~kYd 322 (539)
T PF04184_consen 319 AKYD 322 (539)
T ss_pred HHhc
Confidence 7763
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.54 Score=37.07 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=35.7
Q ss_pred hhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh-hHHHHHHHH
Q 043370 220 GRCGYLDEAAALIRNM----PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA-PYVLLSNIH 285 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~ 285 (430)
.+.|++++|.+.|+.+ |..| ....--.|+.++.+.++++.|...+++.++++|.++. .|.....++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3556666666666655 2222 2333444566666666666676666666666665332 233334443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.3 Score=35.14 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 77 SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
.++..+...+.......+++.+.+.+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444555555555555555442 344455555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.18 Score=46.55 Aligned_cols=220 Identities=13% Similarity=0.078 Sum_probs=135.1
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHhc-------cCCC--CHhHHHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDV----GVISSLISMYSRCGCLDDSVKTFLE-------CEYS--DVVLWSSMIAA 147 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~--d~~~~~~li~~ 147 (430)
-+++.|+...+..+|+..++.|-+ |. .+|.-|.++|.-.+++++|.++-.. |-.+ ..-+...|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 468899999999999999998855 43 4567788888888999999886432 1111 22233345555
Q ss_pred HHhcCChHHHHHHHHH-H---HHCCCC-CCHHHHHHHHHHhhhcCc--------------------HHHHHHHHHHHh--
Q 043370 148 YGFHGKGEEAINLFEQ-M---EQKEFE-ANDVTFVSLLYACSHCGL--------------------KEKGMEFFDLMV-- 200 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~-m---~~~g~~-p~~~t~~~ll~a~~~~g~--------------------~~~a~~~~~~~~-- 200 (430)
+-..|.+++|+-.-.+ + .+.|-+ .....+..+.+.|-..|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777654322 1 222211 122334445555543331 223333333211
Q ss_pred -hhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHh-------CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh--
Q 043370 201 -KKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRN-------MPVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEIL-- 268 (430)
Q Consensus 201 -~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-- 268 (430)
...|-.. .-..|..|...|--.|+++.|...-+. .+.+. .-..+..+..++.-.|+++.|.+.++...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111111 123455566666667899998766442 23222 34567778888889999999999998875
Q ss_pred --cCCC--CCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 269 --GVNP--QDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 269 --~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
++.- .......+|.++|.-...+++|...+.+-
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3332 25567788999999999999999887653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.82 E-value=3.5 Score=40.29 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC-CCCc-----HhHHHHHHHHHHh----cCCHHHHHHHHhccCC--CCHhHHHH
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAG-ASLD-----VGVISSLISMYSR----CGCLDDSVKTFLECEY--SDVVLWSS 143 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~~~~--~d~~~~~~ 143 (430)
..+++...-.|+-+.+.+.+.+..+.+ +... .-.|+..+..++. ....+.|.++++.+.. |+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344444445566666666555544421 1110 1122222222222 3355566666665543 44444433
Q ss_pred HH-HHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 144 MI-AAYGFHGKGEEAINLFEQMEQKE--F-EANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 144 li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
.- ..+...|+.++|++.|++..... . +.....+--+.-.+.-..++++|...|..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 22 23344566666666666543210 0 111223334444455556666666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.25 Score=43.25 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC---CChhHHH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-------PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ---DAAPYVL 280 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~ 280 (430)
.|+.-++.| +.|++.+|..-|... ...||..-| |..++...|+++.|..+|..+.+-.|. -+.+..-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344444433 444466665555544 122333333 555666666666666666666544432 3345555
Q ss_pred HHHHHHhccchhHHHHHHHHHHh
Q 043370 281 LSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 281 l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|.....+.|+.++|..+++++.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 56666666666666666666554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.5 Score=33.91 Aligned_cols=139 Identities=13% Similarity=0.132 Sum_probs=82.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHH
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 229 (430)
-.|..++..++..+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 356777777777777654 244445555544444444455555555554433222 334444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 230 ALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 230 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
..+-.++ .+.......+......|+-+.-.++++.+...+..+|.....+..+|.+.|+..++.+++.+.=++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444433 234445667778889999999999999988554448889999999999999999999999998888873
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.8 Score=34.30 Aligned_cols=120 Identities=14% Similarity=0.253 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcH
Q 043370 113 LISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 189 (430)
++..+.+.+.......+++.+.. .+...+|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 44444444455555555444322 23445555555555442 2233333331 11222333455555555555
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC-GYLDEAAALIRNMPVKANAIIWKTLLSACK 252 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 252 (430)
+++.-++..+.. +...++.+... ++++.|.+++.+-. +...|..++..+.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 555555554421 11122222222 55555555555422 4445555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.49 Score=41.49 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=37.6
Q ss_pred cCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhH
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKA-NAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~ 259 (430)
.|++..|.+-|...++.|.-.+ ....+-.|.+.+...|++++|...|..+ |..| -+...--|.......|+.+.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3334444444444444321111 1223333444444455555544444443 2112 12233333344455555555
Q ss_pred HHHHHHHHhcCCCC
Q 043370 260 AGRIAEEILGVNPQ 273 (430)
Q Consensus 260 a~~~~~~~~~~~p~ 273 (430)
|...++++.+.-|.
T Consensus 234 A~atl~qv~k~YP~ 247 (262)
T COG1729 234 ACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHCCC
Confidence 55555555555553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.52 E-value=4.1 Score=37.98 Aligned_cols=262 Identities=12% Similarity=0.021 Sum_probs=130.1
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC---CCC-CHHHHHHHHHHHhcc
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPI--RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG---FRP-DKITFVSVISSCSEL 85 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p-~~~t~~~ll~~~~~~ 85 (430)
...+.-+.|+++.-.+....... ++...+.++... +.++++++....++....- +.+ ....|........+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 35667788999997777777765 345556655554 8899999988888776531 100 112222222222222
Q ss_pred CChHHHHHHHHHHHHc-------------------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHh--ccCCCCHhHHHHH
Q 043370 86 ATLGQGQQIHAEVVKA-------------------GASLDVGVISSLISMYSRCGCLDDSVKTFL--ECEYSDVVLWSSM 144 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~-------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~d~~~~~~l 144 (430)
..+.+..++.+..... ...++..++..++..-. -+|. .+......+|..+
T Consensus 82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~ 152 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKF 152 (352)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHH
Confidence 2222222222211111 11223333332222110 1111 1122345678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHH
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEA---NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLL 219 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~ 219 (430)
+..+.+.|+++.|...+..+...+..+ ++.....-.......|+..+|...++...+. .... +......+...+
T Consensus 153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (352)
T PF02259_consen 153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISNAELKSGL 231 (352)
T ss_pred HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccHHHHhhcc
Confidence 888888899998888888887643211 2333444455566778888888888777662 1111 111111111111
Q ss_pred hhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 220 GRCGYLDEAAALI-RNMPVKANAIIWKTLLSACKT------HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 220 ~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
.. ..+.....- .......-...+..+..-+.. .+..+.+...|+++.+..|.....|..+...+.+
T Consensus 232 ~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 232 LE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred cc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00 000000000 000000001122222222223 3778888999999999998777777776666543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.9 Score=39.42 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=19.2
Q ss_pred HHCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVG--FRPDKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a 91 (430)
.+..+.++|+..+.+-+..- ..-.-.++..+..+.++.|.++++
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 34555566666555544320 011122344444444555544443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=3 Score=36.36 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=44.6
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQDA---APYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.-|.+.|.+..|..-++++++.-|+.+ .++..|..+|...|..++|...-+-+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 348899999999999999998766544 45567788999999999999887766543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.8 Score=33.57 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCc
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK 206 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 206 (430)
...+..+......|+-+.-.++++++.+. -.|++.....+.+||.+.|+..++.+++.+..+. |++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 34555677888889988888888888764 3778888888999999999999999999988776 653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.5 Score=34.60 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=57.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEA---NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
.....+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++-+...|+ ..|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34444567777777777776654 221 2244556666677777777777777776654333333 234444444433
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 222 CGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 222 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
-...+..+.-+- +.+ ...+....|...|+++++.-|++
T Consensus 95 ~~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 95 YEQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCC
Confidence 322222221111 111 11122446777777777777743
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.13 E-value=3.6 Score=39.49 Aligned_cols=157 Identities=10% Similarity=0.028 Sum_probs=92.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 223 (430)
+|.-.-+..+.+.-+++-++.++ +.||-.+--.++ +--.+..+.++.+++++..+. + ...+..-- .....|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhccc
Confidence 33334456667777777777766 356654432222 333455678888888887653 1 00000000 000111
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC--CChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 224 YLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ--DAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 224 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.. .+.+..-..+|-..+-..+..++.+.|+.++|.+.++++.+..|. +......|+.++...+.+.++..++.+-
T Consensus 245 ~~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 HF---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ch---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11 111111111222333345666788899999999999999877663 5567889999999999999999999887
Q ss_pred HhCCCCCCCce
Q 043370 302 RERNVKKEPGV 312 (430)
Q Consensus 302 ~~~g~~~~~~~ 312 (430)
.+...++....
T Consensus 322 dDi~lpkSAti 332 (539)
T PF04184_consen 322 DDISLPKSATI 332 (539)
T ss_pred ccccCCchHHH
Confidence 55545444433
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.09 E-value=7.3 Score=39.25 Aligned_cols=243 Identities=11% Similarity=0.031 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCCC--------CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC----------
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPIR--------NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG---------- 67 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------- 67 (430)
..+|..+..---.+|+.+.|..+.+.=+.. +..-+..-+.-..+.|+.+-...++..|.+.-
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~ 586 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLR 586 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888999999999998865421 23334455555666676666665555543320
Q ss_pred CCCC-HHHHHHHH---------HHHhccCChHHHHHHHHHH-HH-cCCCCcHhHHHHHHHHHHhcCCHHHHHHHH-----
Q 043370 68 FRPD-KITFVSVI---------SSCSELATLGQGQQIHAEV-VK-AGASLDVGVISSLISMYSRCGCLDDSVKTF----- 130 (430)
Q Consensus 68 ~~p~-~~t~~~ll---------~~~~~~g~~~~a~~~~~~~-~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----- 130 (430)
..|. ...|.-++ +.+-...+......++-+- .+ .-+.+-........+.+++.....-..+..
T Consensus 587 ~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 587 NQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred hchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0111 11122111 1222333333333322221 01 001222222333445555554422222221
Q ss_pred -----hccCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 131 -----LECEYS-----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 131 -----~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
+.+... .-.+.+--+.-+...|+-.+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+...
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 111111 11233444556667788888888777654 4677777777778888888877666544432
Q ss_pred hhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043370 201 KKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAE 265 (430)
Q Consensus 201 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 265 (430)
.+.-|...+..+.+.|+.++|.+.+-+.+-.+ -...+|...|++.+|.++.-
T Consensus 743 -------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 -------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 24456667788888888888888887774322 34455666677666665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.96 E-value=8.3 Score=39.41 Aligned_cols=173 Identities=11% Similarity=0.101 Sum_probs=97.7
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHH----HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLI----AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
.-+++..+..-++.|..+-+.-.. |...-..+. +-+-+.|++++|..-|-+-... +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345666666677777776554332 222222222 2345678888888777665532 3332 2334444444
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVV-LWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
...+-..+++.+.+.|+. +...-+.|+++|.|.++.++-.+..+...+-... -....+..+.+.+-.++|..+-.+..
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 555556667777777776 5666677888888888888877777766521110 12334444555555555555544332
Q ss_pred HCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 166 QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 166 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
. +......++ -..+++++|.+++..+
T Consensus 491 ~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred c-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 2 223333333 3567777887777665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.38 Score=42.80 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
++..++..+...|+.+.+...++++...+|-+...|..|+.+|...|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445566666677777777777777777777777777777777777777777777776654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.3 Score=42.11 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043370 188 LKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGR---------CGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHK 255 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 255 (430)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456778888887744355664 3444444444322 22344556665555 3444 5666666666667777
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+.+.|...|++...++|+.+.+|........-.|+.++|.+.+++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7999999999999999988888988888888999999999888874
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.7 Score=33.62 Aligned_cols=86 Identities=16% Similarity=0.069 Sum_probs=40.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC--HhHHHHHHHHHhhcCCH
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR--LEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 225 (430)
.+..|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|.+=+++..+-.|-+.- ...|..-...|-..|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 44455555555555555543 2234455555555555555555555555555443222211 11222223344455555
Q ss_pred HHHHHHHHh
Q 043370 226 DEAAALIRN 234 (430)
Q Consensus 226 ~~A~~~~~~ 234 (430)
+.|..=|+.
T Consensus 132 d~AR~DFe~ 140 (175)
T KOG4555|consen 132 DAARADFEA 140 (175)
T ss_pred HHHHHhHHH
Confidence 555555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.12 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+|..+...+...|++++|+..+++.++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888887774
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.60 E-value=4.5 Score=41.24 Aligned_cols=179 Identities=14% Similarity=0.089 Sum_probs=105.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKAGASLDV--GVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~ 151 (430)
+..+-+..+.+...++.|..+-+. .+..++. .......+-+.+.|++++|...|-+....-.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 344556666666666666665433 3333321 22333444455788888888777653321111 1245556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
.+..+-..+++.+.+.|+.-. ..-+.|+++|.+.++.+.-.++.+... . |.. ..-....+..+-+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 666677777888888876533 334567888888888888776665543 1 211 11133456667777778888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 232 IRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 232 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
-.+.+. +......+ +-..+++++|.+++..+
T Consensus 486 A~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 776653 33333333 44567888888887663
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.6 Score=38.30 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHcC
Q 043370 53 AEDVLDQYNLMRMVGFRPDKITFVSVISSCSE--LA----TLGQGQQIHAEVVKAG 102 (430)
Q Consensus 53 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~g 102 (430)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 45566778888888888888887775544433 22 2455777888887754
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.29 E-value=6 Score=35.66 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=28.3
Q ss_pred HHCCChhHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHhccC-ChHHHHHHHHHHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVG--FRPDKI------TFVSVISSCSELA-TLGQGQQIHAEVVK 100 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g--~~p~~~------t~~~ll~~~~~~g-~~~~a~~~~~~~~~ 100 (430)
.+.|+.+.|..++.+..... ..|+.. .|+.-.+.+ ..+ +++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHH
Confidence 46788888888888876532 233321 222222332 334 66666666655433
|
It is also involved in sporulation []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.21 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.|..+...+...|++++|.+.+++.++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556666777788888888888888777774
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.32 Score=29.71 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMV 66 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 66 (430)
.|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666664
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.19 E-value=5.9 Score=35.27 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh-------------------------cCCccC
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK-------------------------YRRKPR 208 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-------------------------~~~~p~ 208 (430)
..+|+++|.-+.... --+++-..++.++....+...|...+....-+ .+..-|
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 468888888887653 23345556677777777777666655443210 123345
Q ss_pred HhHHHHHHHHHhhc-CCHHHHHHHHHhC-C-CC--------CC-----HHHHHHH----HHHHHhcCChhHHHHHHHHHh
Q 043370 209 LEHYTCVVDLLGRC-GYLDEAAALIRNM-P-VK--------AN-----AIIWKTL----LSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 209 ~~~~~~li~~~~~~-g~~~~A~~~~~~m-~-~~--------p~-----~~~~~~l----l~~~~~~~~~~~a~~~~~~~~ 268 (430)
+.-|...+.-..+. -.++++.+++... + .- -| ..+|..+ -+.|...|.+.+|.++.++.+
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 56666666544332 3467777776655 1 10 11 2234333 345889999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 269 GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 269 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
.++|-+...+..|++.++..|+--.+.+-++.+.
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 9999999999999999999999888888777774
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.98 Score=34.85 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=51.0
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC-CCC---ChhHHHHHHHHHhccch
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN-PQD---AAPYVLLSNIHASAKRW 291 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 291 (430)
+++..|+++.|++.|.+. .+-| ....||.-..++.-.|+.++|+.-+++.+++. |.. -.+|+.-...|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 345566666666666654 2222 45556666666666666666666666666553 221 12344555566666666
Q ss_pred hHHHHHHHHHHhCC
Q 043370 292 QGVSEFREAMRERN 305 (430)
Q Consensus 292 ~~a~~~~~~m~~~g 305 (430)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666655544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.05 E-value=11 Score=37.89 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=55.5
Q ss_pred cCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF--RPDKITFVSVISSCSELATLGQGQQIHA 96 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 96 (430)
-|++++|.+++-.|..+|. -|..+.+.|++-...++++.-- .+. .--...|+.+..-++....+++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888877765 2333445555554444432210 000 0011233333333333333333333322
Q ss_pred H-------------------H--HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 97 E-------------------V--VKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 97 ~-------------------~--~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
+ + ....++-|....-.+.+++...|.-++|.+.|-+..
T Consensus 821 ~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 821 YCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred hccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 1 1 112345566666677777777777777776665544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.2 Score=36.20 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHH--
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI-TFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVIS-- 111 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-- 111 (430)
+.-..|..-+. .++.+..++|+.-|..+.+.|...-+. ...-.....++.|+...|...|.++-+....|-+.--.
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455555554 567788899999999998876432211 12223445567889999999999887755444332111
Q ss_pred -HHHHHHHhcCCHHHHHHHHhccCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043370 112 -SLISMYSRCGCLDDSVKTFLECEYS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN 172 (430)
Q Consensus 112 -~li~~~~~~g~~~~A~~~~~~~~~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 172 (430)
--.-.+...|.+++...-.+.+..+ -...-.+|.-+-.+.|++.+|.+.|..+......|-
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 1122356788888888877766532 223445666677788999999999998876544443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.56 Score=41.86 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
++++++.++..=.+.|+-||.++++.+++.+.+.+++..|.++...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.58 E-value=4 Score=37.05 Aligned_cols=127 Identities=10% Similarity=0.147 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh--cC----CHHHHHHHHhccCC-------CCHhHHHHHHHHHHhcCC-
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSR--CG----CLDDSVKTFLECEY-------SDVVLWSSMIAAYGFHGK- 153 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~-------~d~~~~~~li~~~~~~g~- 153 (430)
+++...+++.+.+.|+..+..++-+-.-.... .. ....|..+|+.|++ ++-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567789999999999887777553333332 22 35578889999874 345566666554 2232
Q ss_pred ---hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhhcCc--HHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 154 ---GEEAINLFEQMEQKEFEAND--VTFVSLLYACSHCGL--KEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 154 ---~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+. ++++...+|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 46777888888888876643 334444443333222 44788888888776 88888888776543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.45 E-value=10 Score=36.05 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=101.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH-HH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY-TC 214 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~ 214 (430)
-...|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|..+|+.-...+ ||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 34567778888788778899999999999888 6677888888887554 577888889988766543 444343 34
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 215 VVDLLGRCGYLDEAAALIRNM--PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.++-|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 566677889999999999865 22223 567888998888889999888888888888883
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.7 Score=39.24 Aligned_cols=115 Identities=15% Similarity=0.049 Sum_probs=92.0
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHH----HHHHHhcCChh
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV-KANAIIWKTL----LSACKTHKSTD 258 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l----l~~~~~~~~~~ 258 (430)
..|..-+|-..++++.++ .+.|.-.+.-.-+++...|+.+.-...++++ |. .||...|..+ .-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777888888998875 4557777777788899999999888888888 43 5665444333 22356789999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 259 MAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 259 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+|++..++..+++|.|.-+...+...+.-.|++.++.++..+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999988888889999999999999999887654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.39 Score=27.81 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666666666666776666664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.41 Score=27.70 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMR 64 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~ 64 (430)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666777777777777776643
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.99 E-value=3.6 Score=30.14 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
..++|..|-+.+...+-. ...+--+-+......|++++|..+.+.+..||...|-++-. .+.|..+++..-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356666666666554322 33333344566778899999999999998999999987754 456777777777777877
Q ss_pred CCCCCCHHHHHH
Q 043370 167 KEFEANDVTFVS 178 (430)
Q Consensus 167 ~g~~p~~~t~~~ 178 (430)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 565555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.69 E-value=8.6 Score=35.38 Aligned_cols=218 Identities=11% Similarity=0.099 Sum_probs=127.2
Q ss_pred HcCChHHHHHHHccCCCC------CHHHHHHHHHHHHHCCChhHHHHHH-HHHHHC-CCCCCH---HHHHHHHHHHhccC
Q 043370 18 KSGSLVEGEKVIRLMPIR------NVIAWITLIAGKAQNGLAEDVLDQY-NLMRMV-GFRPDK---ITFVSVISSCSELA 86 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~-g~~p~~---~t~~~ll~~~~~~g 86 (430)
...+.+.|+..+.+...+ -..++..+..+.+..|.+++++..- ..|.-. ...-.. ..|..+..++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777655432 2356777788888888888876542 222110 111111 23444444444444
Q ss_pred ChHHHHHHHHHHHHc-CCCC---cHhHHHHHHHHHHhcCCHHHHHHHHhccC-------CC--CHhHHHHHHHHHHhcCC
Q 043370 87 TLGQGQQIHAEVVKA-GASL---DVGVISSLISMYSRCGCLDDSVKTFLECE-------YS--DVVLWSSMIAAYGFHGK 153 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--d~~~~~~li~~~~~~g~ 153 (430)
++.+++.+-..-... |..| -..+..++..++...+.++.+++.|+... .+ ....+-.|-+.|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 444444444333221 1111 12345567777888888888888887643 11 34567788888899999
Q ss_pred hHHHHHHHHHHHH----CCCCCCHHHHHHHH-----HHhhhcCcHHHHHHHHHHHhhh---cCCcc-CHhHHHHHHHHHh
Q 043370 154 GEEAINLFEQMEQ----KEFEANDVTFVSLL-----YACSHCGLKEKGMEFFDLMVKK---YRRKP-RLEHYTCVVDLLG 220 (430)
Q Consensus 154 ~~~A~~~~~~m~~----~g~~p~~~t~~~ll-----~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~ 220 (430)
+++|+-+..+..+ .++..-..-|..++ -++...|.+..|.+.-++..+- +|..| ......++.+.|-
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998877766543 22222223344332 2455677777777777765442 23333 2345567788888
Q ss_pred hcCCHHHHHHHHHhC
Q 043370 221 RCGYLDEAAALIRNM 235 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m 235 (430)
..|+.|.|+.-++..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888888777654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=13 Score=35.50 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHH--HHHHHHHHHCC-----ChhHHHHHHHHHH
Q 043370 38 IAW--ITLIAGKAQNG-----LAEDVLDQYNLMR 64 (430)
Q Consensus 38 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~ 64 (430)
..| ...+.+..... ..+.|+.+|.+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~ 285 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQ 285 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHh
Confidence 556 55555544422 2345666666666
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.7 Score=31.84 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.+....+ +....|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3446677777777888999999999999999999999999999999976544 33336776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.42 E-value=6.5 Score=32.66 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECEYSD------VVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~~~d------~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
.+..+.+.|.+.|+.++|.+.|.++.+.. +..+-.+|......+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555555555555555555544321 223344444444455555555554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.40 E-value=6.6 Score=31.75 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=52.2
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChh
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAAALIRNMPVK-ANAIIWKTLLSACKTHKSTD 258 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~~~ 258 (430)
+.-...++.+++..++..+. -+.|.. ..-..-...+.+.|++++|..+|+++.-. |....-.+|+..|....+-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456678888888888775 345543 33333455567888888888888888333 44444455555555443333
Q ss_pred HHHHHHHHHhcCCC
Q 043370 259 MAGRIAEEILGVNP 272 (430)
Q Consensus 259 ~a~~~~~~~~~~~p 272 (430)
.=..+.+++.+.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 33344455555555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.37 E-value=12 Score=34.76 Aligned_cols=68 Identities=7% Similarity=0.083 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC----CCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 239 ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP----QDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
....+|..+...+.+.|+++.|...+.++...++ ..+.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3566889999999999999999999999987652 2466777778899999999999999988877443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.27 E-value=9.3 Score=33.21 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=42.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcC----CCCCChhHHHHH
Q 043370 215 VVDLLGRCGYLDEAAALIRNMP-----V--KANA-IIWKTLLSACKTHKSTDMAGRIAEEILGV----NPQDAAPYVLLS 282 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~-----~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~ 282 (430)
....|.+..++++|-..|.+-+ + -|+. ..|-+.|-.+.-..++..|.+.++.-..+ .|.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3344555566666555544431 0 1221 22333344455556677777777664322 344556666666
Q ss_pred HHHHhccchhHHHHHH
Q 043370 283 NIHASAKRWQGVSEFR 298 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~ 298 (430)
.+|- .|+.+++..+.
T Consensus 236 ~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHhc-cCCHHHHHHHH
Confidence 6663 45555555443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=20 Score=36.67 Aligned_cols=49 Identities=4% Similarity=-0.105 Sum_probs=20.8
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
..++++.+...+..|.........-..=+.+++...|+.++|...|+..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444432211122333344444444445555555544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.99 E-value=7.7 Score=31.78 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=65.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHh-HHHHH--HHHHhhcC
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLE-HYTCV--VDLLGRCG 223 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 223 (430)
+++.+..++|+.-|.++.+.|...-++ .-..........|+...|...|+++-+. .-.|... -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 355677888888888887776543222 1222333456677778888888877655 2223221 11111 11234566
Q ss_pred CHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 224 YLDEAAALIRNMPV--KA-NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 224 ~~~~A~~~~~~m~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
.+++.....+.+.. +| -...-.+|--+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666666665521 12 122233444455566666666666666653
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.86 E-value=9.9 Score=32.81 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=16.0
Q ss_pred HHhcCChhHHHHHHHHHhcCC
Q 043370 251 CKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~ 271 (430)
-...+++.+|+.+|+++....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456688899999999986433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.85 E-value=3.5 Score=36.81 Aligned_cols=77 Identities=10% Similarity=0.096 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-----cCCCCcHhHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK-----AGASLDVGVISSL 113 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 113 (430)
++..++..+...|+++.+...++++.... +-|...|..++.++.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455666666777777777777776654 44666777777777777777777777666543 4666666555544
Q ss_pred HHH
Q 043370 114 ISM 116 (430)
Q Consensus 114 i~~ 116 (430)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.80 E-value=2.2 Score=30.96 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
|.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.+..+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 5567777888888888999999999999999999999999999998865433 24456666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.49 Score=27.04 Aligned_cols=31 Identities=10% Similarity=0.303 Sum_probs=17.3
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
++.++.. |-|..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 225666666666666666666654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.30 E-value=3.8 Score=40.17 Aligned_cols=150 Identities=16% Similarity=0.091 Sum_probs=84.7
Q ss_pred HcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043370 18 KSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAE 97 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 97 (430)
-.|+++.|..++..++++ .-+.++.-+-+.|-.++|+++ .+|....- ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 356677777766666633 233444545556666665543 22322211 122345777777666544
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 98 VVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 98 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
.. +..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-....+.|. - |
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N 725 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----N 725 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----c
Confidence 31 45557777777777777777777776543 255566666666766655555555555542 1 2
Q ss_pred HHHHHhhhcCcHHHHHHHHHHH
Q 043370 178 SLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
....++...|+++++.+++.+-
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHhc
Confidence 2233455667777776666543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.16 E-value=11 Score=32.17 Aligned_cols=162 Identities=9% Similarity=0.017 Sum_probs=83.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV 216 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 216 (430)
-+..||-+.--+...|+++.|.+.|+...+.+ +....++..-.-++.-.|++..|.+=+...-+.-...|-...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34566666666677777777777777776643 11223322222234455667666665555443312222222332222
Q ss_pred HHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC-------CChhHHHHHHHHHhc
Q 043370 217 DLLGRCGYLDEAAAL-IRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ-------DAAPYVLLSNIHASA 288 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~ 288 (430)
. +.-++.+|..- .++.. ..|..-|..-|-.+.-..-.+ +.+++++.....+ -..+|.-|..-|...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 22344444433 23321 235555655554432211111 1233333322221 245788899999999
Q ss_pred cchhHHHHHHHHHHhCC
Q 043370 289 KRWQGVSEFREAMRERN 305 (430)
Q Consensus 289 g~~~~a~~~~~~m~~~g 305 (430)
|+.++|..+|+......
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999998765443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=89.96 E-value=18 Score=34.44 Aligned_cols=252 Identities=9% Similarity=0.010 Sum_probs=141.8
Q ss_pred HHHcCChHHHHHHHccCCCC---C------HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hc
Q 043370 16 YMKSGSLVEGEKVIRLMPIR---N------VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC--SE 84 (430)
Q Consensus 16 ~~~~g~~~~A~~~f~~m~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~ 84 (430)
+-+.+++.+|.++|.++-.. + .+.-+.++++|..++ .+.....+....+. .| ...|..+..+. .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 44688999999999987532 2 344567888887654 44444444444443 23 23444444433 46
Q ss_pred cCChHHHHHHHHHHHHc--CCCC------------cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CCHhHHH
Q 043370 85 LATLGQGQQIHAEVVKA--GASL------------DVGVISSLISMYSRCGCLDDSVKTFLECEY--------SDVVLWS 142 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~d~~~~~ 142 (430)
.+.+.+|.+.+..-... +..| |...-+..+++..+.|++.+++.++++|.+ -++.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78889998888765543 2221 333446678888999999999999988752 3778888
Q ss_pred HHHHHHHhc-------C--------ChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHhhh--cCcHHHHHHHHHHH
Q 043370 143 SMIAAYGFH-------G--------KGEEAINLFEQMEQK------EFEANDVTFVSLLYACSH--CGLKEKGMEFFDLM 199 (430)
Q Consensus 143 ~li~~~~~~-------g--------~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~ 199 (430)
.++-.+.+. + .++.++-...+|... .+-|....+..++.-..- ..+..--.+++...
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 755444331 1 122333333333321 133433333333322211 11222223333333
Q ss_pred hhhcCCccCHh-HHHHHHHHHhhcCCHHHHHHHHHhC---CCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 200 VKKYRRKPRLE-HYTCVVDLLGRCGYLDEAAALIRNM---PVK----ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 200 ~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m---~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
.+. -+.|+-. +...|++-+.+ +.+++..+-+.+ .++ .=..++..++....+.++...|.+.+.-+.-++
T Consensus 252 e~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 252 ENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred Hhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 222 3445432 23344444443 445555544444 111 124568888888999999999999999888888
Q ss_pred CCC
Q 043370 272 PQD 274 (430)
Q Consensus 272 p~~ 274 (430)
|..
T Consensus 329 p~~ 331 (549)
T PF07079_consen 329 PRI 331 (549)
T ss_pred Ccc
Confidence 854
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.9 Score=30.60 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=22.5
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 102 (430)
+...|+|++|+.+.+.+ ..||...|..+-.. +.|..+....-+..+...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 44555555555554443 24555555444332 3344443333333444333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.40 E-value=1.6 Score=36.51 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=58.0
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 219 LGRCGYLDEAAALIRNM-PVKA------NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
+.+.|++++|..-|... ..-| -.+.|..-..+..+.+.++.|+.-..+.++++|....+...-..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45567777776666554 1111 1233444445577778888888888888888886666666667778888888
Q ss_pred hHHHHHHHHHHhCC
Q 043370 292 QGVSEFREAMRERN 305 (430)
Q Consensus 292 ~~a~~~~~~m~~~g 305 (430)
++|..=++++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888776543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.97 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666667777777777777766665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.33 E-value=7.2 Score=32.41 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD--KITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
..+..+..-|.+.|+.++|++.|.++......|. ...+..++..+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677777888888888888888888876543333 23456677777777888777777666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.25 E-value=31 Score=37.02 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVT--FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC 222 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 222 (430)
+.+|...|+|.+|+.+-.+|... -|... -..|..-+...++.-+|-++..+...+ | .--+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhH
Confidence 44555566666666666555321 12221 134556666677777776666655432 1 2235556666
Q ss_pred CCHHHHHHHHHhC
Q 043370 223 GYLDEAAALIRNM 235 (430)
Q Consensus 223 g~~~~A~~~~~~m 235 (430)
..+++|..+....
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 7777777766554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.78 E-value=12 Score=30.67 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=82.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC--CHHHHHHHHHhC
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG--YLDEAAALIRNM 235 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 235 (430)
++.++.+.+.+++|+...+..++..+.+.|....-.+++. +++-+|.....+.+-.+.... -..-|.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 4566667778888888888888888888888766554443 255555554444433232211 133455555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 236 PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 236 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
+. .+..++..+...|++-+|.++.+.....+. .....++.+-.+.++...-..+++-..+++.
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDS---VPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCccc---CCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 42 234456667788888888888877544332 2234566666667776666666666655543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.71 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
+|..+...+...|+.+.|...|++..+++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555566777777777777777766666
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.34 E-value=28 Score=34.39 Aligned_cols=122 Identities=12% Similarity=0.008 Sum_probs=59.9
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCCCC---HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRN---VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+..+|..-++.-.+.|+.+.+.-+|++..-|- ...|--.+.-....|+.+-|-.++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34556666666666666666666666655431 233444444444446666665555544443222222222222222
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
+-..|++..|..+++.+...- +....+-..-+.+-.+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 334456666666666665542 222333333445555556655555
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.90 E-value=4.7 Score=33.91 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE-------YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+.|.+.|-.+...+.--++....+|...|. ..+.++|..++.... ..|+..+.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555544445666666666665 345555555554321 335666666666666666666653
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.87 E-value=15 Score=31.80 Aligned_cols=148 Identities=11% Similarity=0.144 Sum_probs=83.0
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 91 (430)
-+..|++.-++..|-..++++.+| +.+--++++ |.+..+..--.++.+-...++++-+......++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 456666666666666666666555 222222322 444443333333433344444444444443333 2345666555
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 92 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
...++.-.. |+ | +-.+..+|+-..+|.+.....|+..+. .++.++|.+.+.++-+.|..|
T Consensus 212 lNnLQst~~-g~-----------------g-~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVN-GF-----------------G-LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhc-cc-----------------c-ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 554443221 11 1 122455677777888888888887665 577999999999999999888
Q ss_pred CHHHHHHHHHHhh
Q 043370 172 NDVTFVSLLYACS 184 (430)
Q Consensus 172 ~~~t~~~ll~a~~ 184 (430)
.... +.+...+-
T Consensus 272 ~Dii-~~~FRv~K 283 (333)
T KOG0991|consen 272 EDII-TTLFRVVK 283 (333)
T ss_pred HHHH-HHHHHHHH
Confidence 6542 34444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=21 Score=32.25 Aligned_cols=217 Identities=12% Similarity=0.004 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH----HHHHHHHhcc--CCCCHhHHH
Q 043370 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL----DDSVKTFLEC--EYSDVVLWS 142 (430)
Q Consensus 69 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~--~~~d~~~~~ 142 (430)
.+|.......+.++...|..+. ......+.+ .+|..+...-+.+++..|+. +++...+..+ ..+|...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~-~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDV-FRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchH-HHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 3455566666666666654322 222223332 23555666666666666652 4566666554 345555555
Q ss_pred HHHHHHHhcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 143 SMIAAYGFHGKG-----EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 143 ~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
..+.++...+.. .++...+..... .++..+-...+.++.+.++ +++...+-.+.++ ++...-..-+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHH
Confidence 555555554321 233444433333 2344555556666666665 3455555555442 34444455555
Q ss_pred HHhhcC-CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHH
Q 043370 218 LLGRCG-YLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 218 ~~~~~g-~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
++++.+ ..+.+...+..+-..+|..+-...+.++.+.++. .+...+-+.++.+ + .....+.++...|.. +|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~--~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG--T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC--c--hHHHHHHHHHhcCCH-hHHH
Confidence 555543 1334444444442345666666666667666663 4444444443321 1 344566666666664 4666
Q ss_pred HHHHHHh
Q 043370 297 FREAMRE 303 (430)
Q Consensus 297 ~~~~m~~ 303 (430)
.+..+.+
T Consensus 256 ~L~~l~~ 262 (280)
T PRK09687 256 VLDTLLY 262 (280)
T ss_pred HHHHHHh
Confidence 6666554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=2.7 Score=39.91 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=78.2
Q ss_pred hcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHH
Q 043370 150 FHGKGEEAIN-LFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 150 ~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 228 (430)
..|+...|-+ +|.-+....-.|+.+...+.| ..+.|.++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3566655544 444444444456655554444 5678888888888877754 2444566778888888888999998
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 229 AALIRNM-PVK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 229 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
..+-..| +.+ .++.............|-++++...++++..++|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8888877 211 133333333334556677888888888888777643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.34 E-value=5.2 Score=32.34 Aligned_cols=79 Identities=18% Similarity=0.081 Sum_probs=49.5
Q ss_pred HHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 211 HYTCVVDLL---GRCGYLDEAAALIRNM-PVKANAIIWKTLLS-ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 211 ~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
..+.|++.. .+.++.+++..++..+ -.+|.......+-. .+...|++.+|.++++.+.+..|..+..-..+.-++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 344454443 4668899999999888 34454433322222 367889999999999998877775444433344344
Q ss_pred Hhcc
Q 043370 286 ASAK 289 (430)
Q Consensus 286 ~~~g 289 (430)
...|
T Consensus 89 ~~~~ 92 (160)
T PF09613_consen 89 YALG 92 (160)
T ss_pred HHcC
Confidence 3333
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=86.96 E-value=11 Score=28.12 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=55.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
....++|..|.+.+...+- ....+--+-+..+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 3457888888888877654 23444445566777888888885555556678888887663 44677777888778777
Q ss_pred HHCCCCCCHHHHH
Q 043370 165 EQKEFEANDVTFV 177 (430)
Q Consensus 165 ~~~g~~p~~~t~~ 177 (430)
..+| .|....|.
T Consensus 96 a~~g-~~~~q~Fa 107 (116)
T PF09477_consen 96 ASSG-SPELQAFA 107 (116)
T ss_dssp CT-S-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6665 44444443
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=86.62 E-value=50 Score=35.50 Aligned_cols=255 Identities=8% Similarity=-0.079 Sum_probs=140.3
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043370 26 EKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASL 105 (430)
Q Consensus 26 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 105 (430)
..+...+..+|...-..-+..+.+.+. .+++..+..+++ .+|...-...+.++.+.+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 455555667888877777887777775 445565556654 345555555556555443221122333333332 4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
|..+..+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 666766677776654321 12334455667777666667777776655432 222222 3455555666666666
Q ss_pred cCcHHH-HHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 186 CGLKEK-GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 186 ~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
.+..+. +...+..+.+ .++...-...+.++++.|..+.+...+..+-..++..+-...+.++...+.. ++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHH
Confidence 665432 3344455543 2567777788888888887655544343332345666666667777776653 444444
Q ss_pred HHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 265 EEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 265 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
..+++ +| +...-...+.++.+.+.-..+...+....
T Consensus 844 ~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 844 VEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44442 33 44455555566655432334554444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.44 E-value=2 Score=25.28 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRM 65 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 65 (430)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776653
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.40 E-value=12 Score=33.53 Aligned_cols=113 Identities=11% Similarity=0.195 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhh-c-CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 154 GEEAINLFEQMEQ-KEFEANDVTFVSLLYACSH-C-GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 154 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
..+|+++|+.... ..+--|..+...++..... . .....-.++.+.+...++..++..+-.+.++.++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4567777763322 2244456666666655443 1 12333344444444544556666666667777777777777666
Q ss_pred HHHhC-C---CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 231 LIRNM-P---VKANAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 231 ~~~~m-~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
+++.. + -.-|...|..+|..-...|+......+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 66654 1 112555666666666666665555554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.34 E-value=6 Score=28.81 Aligned_cols=58 Identities=12% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-HcCCCCcHhHHHHHH
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV-KAGASLDVGVISSLI 114 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li 114 (430)
++.+-++.+....+.|++....+.+.||-+.+++..|.++++-++ +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 455666667777788888888888888888888888888887665 3332 344555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.32 E-value=1.9 Score=25.36 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666777777666666543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.07 E-value=2 Score=23.97 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.81 E-value=3.5 Score=32.75 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 221 RCGYLDEAAALIRNM-PVKAN---AIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
+.++++++..+++.| -.+|+ ..++... .+...|++++|.++++++.+..+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC
Confidence 467777777777777 23333 3333322 25667777777777777766665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.78 E-value=0.32 Score=38.81 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFL 131 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 131 (430)
+..+.+.+.++....+++.+.+.+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555666666655444456666666666666655555555555
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.10 E-value=9 Score=34.55 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=72.1
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-C--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 101 AGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY-S--------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 101 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
.|.+....+...++..-....+++++...+-.+.. + ...+|--+ +. .=++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---ll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---LL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---HH-ccChHHHHHHHhCcchhcccc
Confidence 34455555666677766677788888888776652 1 22333322 22 346789999999889999999
Q ss_pred CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 172 NDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 172 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
|..|++.++..+.+.++..+|.++.-.|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.95 E-value=3.5 Score=37.47 Aligned_cols=44 Identities=23% Similarity=0.134 Sum_probs=22.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHH
Q 043370 147 AYGFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 192 (430)
-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHH
Confidence 455555555555555544432 33 555555555555555444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.66 E-value=21 Score=29.29 Aligned_cols=130 Identities=11% Similarity=0.069 Sum_probs=64.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhH-HHHHHHHHHhc-CCHHHHHHHHhccCC
Q 043370 58 DQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV-ISSLISMYSRC-GCLDDSVKTFLECEY 135 (430)
Q Consensus 58 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~-g~~~~A~~~~~~~~~ 135 (430)
+.++.+.+.+++|+...+..++..+.+.|.+..-.+ ++..++-+|... ...|++.-.+. .-..-|.+.+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 444555566777777777777777777776544433 333333333332 22222221110 01222333333332
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 136 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
..+..++..+...|++-+|+++.++..... .++ -..++.+..+.++...-..+++-.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234556666777777777777776643221 112 233455555555554444444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.38 E-value=27 Score=30.47 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhc-CCccCH--hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKY-RRKPRL--EHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACK 252 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 252 (430)
|.-....|...|.++.|-..+++.-+-. ++.|+. ..|.--.......++...|.+++.. .-..+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk------------~sr~lV 161 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK------------CSRVLV 161 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH------------hhhHhh
Confidence 4444555666666665555555433210 233332 2222222233333444444444433 333456
Q ss_pred hcCChhHHHHHHHHHh----cCC--CCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 253 THKSTDMAGRIAEEIL----GVN--PQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~----~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+...+++|-..+.+-. +.+ |..-..|...+-.|....++..|+++++.
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 6666776666655543 222 32345688888888889999999998874
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.23 E-value=1.3 Score=35.30 Aligned_cols=84 Identities=5% Similarity=0.069 Sum_probs=45.4
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555566667777777777766554455666677777777766655555555411 11112334455555555
Q ss_pred HHHHHHHHhcc
Q 043370 123 LDDSVKTFLEC 133 (430)
Q Consensus 123 ~~~A~~~~~~~ 133 (430)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.22 E-value=6.8 Score=28.85 Aligned_cols=59 Identities=7% Similarity=0.158 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++++-+... ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 45555666666777888888888888888888888888888776543 222222555554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.98 E-value=32 Score=31.01 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=19.9
Q ss_pred HHHHHHHHHHH--HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 37 VIAWITLIAGK--AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 37 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
+..++-+|+-| ...+--++..+++.-+ .|+.++...=.+++.+.
T Consensus 111 ~qvf~KliRRykyLeK~fE~e~~k~Llfl--k~F~e~Er~KLA~~Tal 156 (412)
T KOG2297|consen 111 VQVFQKLIRRYKYLEKNFENEMRKFLLFL--KLFEENERKKLAMLTAL 156 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHH
Confidence 34556666543 2233223333333322 24566665555555543
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=83.87 E-value=13 Score=32.91 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh-
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQK--EFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR- 221 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 221 (430)
|.+++..++|.+++...-+--+. .++|.. ...-|-.|++.+....+.++-....+..+ .-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 67888889998888765444332 244443 33444568899999988888888776522 2234458888888765
Q ss_pred ----cCCHHHHHHHHHhC
Q 043370 222 ----CGYLDEAAALIRNM 235 (430)
Q Consensus 222 ----~g~~~~A~~~~~~m 235 (430)
.|.+++|+++...-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 59999999998543
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.75 E-value=56 Score=33.54 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCH
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECEYSDV 138 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~ 138 (430)
.+.-.|+..|...+++++|...+-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 4445689999999999999998877776543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.78 E-value=49 Score=32.23 Aligned_cols=157 Identities=12% Similarity=0.110 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
...-+++..+.++-...-...+..+|+.-| -+...|..++..|... ..+.-..+++++++..+. |++...-|.+.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 334456666666666666666777776654 3556666677766665 445556666666666544 455555555555
Q ss_pred HhcCCHHHHHHHHhccCCC------C---HhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhhcC
Q 043370 118 SRCGCLDDSVKTFLECEYS------D---VVLWSSMIAAYGFHGKGEEAINLFEQMEQ-KEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~------d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g 187 (430)
-+ ++.+.+...|.....+ + -..|..++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 55 6666666666553211 1 12444443211 2334444444444433 222333344444445555566
Q ss_pred cHHHHHHHHHHHhh
Q 043370 188 LKEKGMEFFDLMVK 201 (430)
Q Consensus 188 ~~~~a~~~~~~~~~ 201 (430)
++++|.+++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 66666666665554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.67 E-value=14 Score=31.20 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC--CccCHhHHHHHHHHHhhcCCHHHHH
Q 043370 155 EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR--RKPRLEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~ 229 (430)
++|.+.|-++...+.--++.....|. .|-...+.+++.+++....+-+. -.+++..+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46666666666655433333333333 33335566666666665544221 1345666666666666666666654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.08 E-value=36 Score=30.16 Aligned_cols=255 Identities=15% Similarity=0.146 Sum_probs=146.0
Q ss_pred CCchhHHHHHHHHH-HHcCChHHHHHHHccCCC----C---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHC---CCC--
Q 043370 3 ELDLVAGSSLAHMY-MKSGSLVEGEKVIRLMPI----R---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMV---GFR-- 69 (430)
Q Consensus 3 ~~~~~~~~~li~~~-~~~g~~~~A~~~f~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~-- 69 (430)
+||+..-|..-+.= .+....++|+.-|.+..+ + .-.....+|..+.+.|++++.+..+.+|+.. .+.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 56665544332221 234578889888887642 2 2345567889999999999999999888631 122
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------
Q 043370 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKA-----GASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-------- 136 (430)
Q Consensus 70 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------- 136 (430)
-+..+.++++.-.....+.+.-..+++.-++. +-..--.+-+-|...|...|.+.+-.+++.++...
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 24556777777666666666666666543321 01111223456778888888888888888765411
Q ss_pred -------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhh-----hcCcHHHHHHHHHHHhhhc
Q 043370 137 -------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYACS-----HCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 137 -------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~ 203 (430)
-...|..=|..|....+-..-..+|++..... --|.+.. ..+|.-|. +.|.+++|..=|-+.-+.|
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 13467777888888877777777887764422 2344433 34555553 5677777654333332322
Q ss_pred ---CCccCH--hHHHHHHHHHhhcCCHHHHHHHHHh--C-CC--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 204 ---RRKPRL--EHYTCVVDLLGRCGYLDEAAALIRN--M-PV--KANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 204 ---~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~--m-~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
|.+... --|..|..++.++|-- -|+. . |. .|.......|+.+|..+ ++.+-++++
T Consensus 262 DEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 262 DESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 222111 2345556666665421 1111 1 22 35566777888888544 444433333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.04 E-value=2.8 Score=38.04 Aligned_cols=92 Identities=10% Similarity=0.054 Sum_probs=69.8
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVK-ANAIIWKTLLSACKTHKST 257 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~ 257 (430)
+-|.++|.+++|+..|.... .+.| +..++..-..+|.+..++..|+.=.+.. ... .-...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 56889999999999999876 3456 7888888899999999998887655443 111 1234455555566667889
Q ss_pred hHHHHHHHHHhcCCCCCC
Q 043370 258 DMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~ 275 (430)
.+|.+-++..++++|.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 999999999999999643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.09 E-value=11 Score=31.73 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=37.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHH---HHHHHhcCChHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDV----GVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSM---IAAYGFHGKGEE 156 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~l---i~~~~~~g~~~~ 156 (430)
..|++++|..-|...++.-++... ..|..-..+..+.+.++.|+.--....+-++.--.+| ..+|.+..++++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ee 186 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEE 186 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHH
Confidence 445555555555555544222111 2223333344455555555443333222222111111 235555666777
Q ss_pred HHHHHHHHHHC
Q 043370 157 AINLFEQMEQK 167 (430)
Q Consensus 157 A~~~~~~m~~~ 167 (430)
|+.=|.++.+.
T Consensus 187 aleDyKki~E~ 197 (271)
T KOG4234|consen 187 ALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHh
Confidence 77777776664
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.82 E-value=2.4 Score=22.29 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhccchhHHHHHHH
Q 043370 277 PYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 277 ~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.27 E-value=65 Score=31.95 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=78.3
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----HH-HH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAA---ALIRNM-PVKANAIIWKTLL----SA-CK 252 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll----~~-~~ 252 (430)
+-..|+.+.|..+++.+..++ |+. ..-.--+....+.|..+.+. .++... +.+-+..+...+. .- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 345689999999999998763 543 33333455566788888887 454444 2222222222222 21 55
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH---HHHHHHHHHhCCC
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG---VSEFREAMRERNV 306 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~g~ 306 (430)
..++.+.|..++.++.+..|++...|..+++.....+...+ -.-+...+....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~ 509 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLI 509 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhc
Confidence 67899999999999999999999999999998877663333 3334444444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 |
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 3e-07
Identities = 20/294 (6%), Positives = 77/294 (26%), Gaps = 14/294 (4%)
Query: 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128
P + ++ +L Q + +A S + + L +
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 129 TFLEC-------EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
+ + + ++++++ + G +E + + ++ + +++ + L
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR-------CGYLDEAAALIRN 234
+E + + K + ++ R + +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 235 MPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGV 294
P + + + + + + + Q + + K
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPS 328
Query: 295 SEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEM 348
E + A + ++ L + + + + + + +L L
Sbjct: 329 KEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDERE 382
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 79/507 (15%), Positives = 133/507 (26%), Gaps = 189/507 (37%)
Query: 8 AG-SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQ-----YN 61
+G + +A + KV M I W+ L + E VL+ Y
Sbjct: 161 SGKTWVA------LDVCLSYKVQCKMD--FKIFWLNL--KNCNS--PETVLEMLQKLLYQ 208
Query: 62 LMRMVGFRPD-----KITFVSVISSCSELATLGQGQQ---I-----HAEVVKA---GA-- 103
+ R D K+ S+ + L + + +A+ A
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 104 ---SLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160
+ V L + + LD T +E +L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----------------------DEVKSL 306
Query: 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLG 220
LK DL PR +
Sbjct: 307 L--------------------------LKYLDCRPQDL--------PRE---VLTTNPR- 328
Query: 221 RCGYLDEAAALIRNMPVKANAIIWK--------TLLSACKTH-KSTDMAGRIAEEILGVN 271
L A IR+ + WK T++ + + + R + L V
Sbjct: 329 ---RLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVF 381
Query: 272 PQDAA-PYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKS 330
P A P +LLS I W V + + M + N++H++++ +K
Sbjct: 382 PPSAHIPTILLSLI------WFDVIK-SDVM--------------VVVNKLHKYSLVEK- 419
Query: 331 HPRSMEI---DLYLEELTSEMKLRG--------YVPDTGADMHDM-DSEEKEY---NLKH 375
P+ I +YLE Y D D+ +Y ++ H
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 376 H------SEK--------LAIAF----------AEHTRG----LIVMLPF--KYISEIKN 405
H E+ L F A + G + L F YI +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 406 R-EIIVRDASRF-----HHFRNGKCSC 426
+ E +V F + K +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTD 566
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.54 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.53 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.23 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.6 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.43 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.35 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.34 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.31 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.31 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.18 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.06 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.05 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.99 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.98 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.84 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.8 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.68 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.67 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.61 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.47 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.44 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.32 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.3 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.23 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.02 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.77 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.74 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.67 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.28 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.17 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.14 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.94 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.82 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.78 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.57 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.45 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.99 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.33 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.2 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.82 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.71 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 93.53 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.37 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 93.3 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.02 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.89 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.16 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.76 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.71 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.54 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.07 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.94 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.79 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.71 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.68 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.14 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.96 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.94 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.7 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.41 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.4 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 87.35 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.17 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.09 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.73 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 85.63 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.83 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 84.05 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.31 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.96 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.19 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=260.34 Aligned_cols=197 Identities=10% Similarity=0.115 Sum_probs=176.3
Q ss_pred HHHHHccCCCC-----CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHH
Q 043370 25 GEKVIRLMPIR-----NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT---------LGQ 90 (430)
Q Consensus 25 A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~ 90 (430)
+..+++++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555432 2346889999999999999999999999999999999999999999987654 688
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 91 GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 91 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
|.++|++|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999986 57999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc
Q 043370 167 KEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC 222 (430)
Q Consensus 167 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 222 (430)
.|+.||..||++||.+|++.|++++|.+++++|.+. +..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999877 9999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=258.20 Aligned_cols=293 Identities=11% Similarity=-0.010 Sum_probs=269.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC--CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI--RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE 84 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 84 (430)
.+|+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 4566678889999999999999999987 799999999999999999999999999999875 4578889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
.|++++|.++++++.+.. +.+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999764 4588999999999999999999999999864 457899999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC------
Q 043370 162 EQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM------ 235 (430)
Q Consensus 162 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------ 235 (430)
+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999874 557899999999999999999999999999864 2447889999999999999999999999988
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 236 -PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 236 -~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+..|+ ..+|..+..+|.+.|++++|...++++.+.+|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45787 7899999999999999999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=249.94 Aligned_cols=200 Identities=11% Similarity=0.105 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---------H
Q 043370 54 EDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC---------L 123 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~ 123 (430)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455667788777766554 45888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 124 DDSVKTFLECE----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 124 ~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
+.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999986 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 043370 200 VKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSACKTH 254 (430)
Q Consensus 200 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 254 (430)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..|+..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 887 99999999999999999999999999999999 7899999999999998763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=252.60 Aligned_cols=342 Identities=9% Similarity=-0.022 Sum_probs=266.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccC--CCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC--------------
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLM--PIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV-------------- 66 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 66 (430)
.||..++..++.+|.+.|++++|..+|+++ ..++..+|+.++.+|.+.|++++|+++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD 193 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCC
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccc
Confidence 467777888888888888888888888887 3568888888888888888888888888853221
Q ss_pred -CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHH----------------------------------
Q 043370 67 -GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVIS---------------------------------- 111 (430)
Q Consensus 67 -g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~---------------------------------- 111 (430)
+.+++..+|+.++.++.+.|++++|.+.|+++.+.++. +...+.
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 22345788888899999999999999999888876533 333333
Q ss_pred ----HHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 112 ----SLISMYSRCGCLDDSVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 112 ----~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
.++.+|.+.|++++|.++|+++.. +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 235667788888999999988876 788999999999999999999999999998765 4467788899999999
Q ss_pred cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRI 263 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 263 (430)
.|++++|..+++.+.+. .+.+...++.++.+|.+.|++++|.++|+++ ...| +..+|+.++.+|.+.|++++|..+
T Consensus 352 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998753 3457888999999999999999999999987 3334 578999999999999999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHH
Q 043370 264 AEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEE 343 (430)
Q Consensus 264 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (430)
++++.+..|.+..+|..++.+|.+.|++++|.++++++.+.. |.....|..+ .......++.+++...+++
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNEL-------GVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHH-------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHH-------HHHHHHhCCHHHHHHHHHH
Confidence 999999999899999999999999999999999999997653 2211222211 1112235566666655555
Q ss_pred HHHHHHHcCcccCC
Q 043370 344 LTSEMKLRGYVPDT 357 (430)
Q Consensus 344 l~~~m~~~g~~p~~ 357 (430)
+.+...+.|..|+.
T Consensus 501 ~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 501 ALLLVKKTQSNEKP 514 (597)
T ss_dssp HHHHHHHSCCCSGG
T ss_pred HHHhhhccccchhh
Confidence 55554555777763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-24 Score=199.68 Aligned_cols=295 Identities=14% Similarity=0.071 Sum_probs=230.0
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
.+..+|..+...|.+.|++++|...|+++. ..+..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+..
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 143 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 345677777888888888888888877664 2345677778888888888888888888777653 233455666777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A 157 (430)
.+...|++++|.+.++++.+..+ .+..+++.+...|.+.|++++|...|+++. +.+...|..+...+...|++++|
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 77777888888888888877643 356777888888888888888888887754 34567778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
+..|++..... +.+..++..+...+...|++++|...|+++.+. .+.+...|..+...|.+.|++++|.+.|+++ .
T Consensus 223 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 223 VAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888877652 334677888888889999999999999988753 2335678888899999999999999998887 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 237 VK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 237 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.. ++..+|..+...+...|++++|...++++.+..|++..++..++.+|...|++++|...++++.+
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23 36788888888899999999999999999998888888899999999999999999999988865
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-23 Score=194.15 Aligned_cols=294 Identities=14% Similarity=0.089 Sum_probs=257.9
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+...+..+...+.+.|++++|...++... ..+..+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..+
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 34567778888999999999999987654 4477899999999999999999999999998863 3456679999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+...|++++|.+.++++++..+. +..++..+...|...|++++|.+.|+++. +.+..+|+.+...|...|++++|+
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999987533 66778889999999999999999999865 346789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
..|+++.+.+ +.+...+..+...+...|++++|...+.+..+. .| +...+..+...|.+.|++++|.+.|+++ .
T Consensus 190 ~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 190 HHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998864 345678888999999999999999999998754 44 5788999999999999999999999988 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 237 VKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 237 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..| +..+|..+...+...|++++|...++++.+..|.++.++..++.++...|++++|...++++.+.
T Consensus 266 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455 57789999999999999999999999999999999999999999999999999999999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-23 Score=197.51 Aligned_cols=295 Identities=13% Similarity=0.068 Sum_probs=256.5
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
.+..++..+...|.+.|++++|..+|+++. ..+..+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 345788999999999999999999999875 3578999999999999999999999999999875 556888999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcH---hHHHHH------------HHHHHhcCCHHHHHHHHhccC---CCCHhHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDV---GVISSL------------ISMYSRCGCLDDSVKTFLECE---YSDVVLWS 142 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~d~~~~~ 142 (430)
++...|++++|.+.++.+.+.... +. ..+..+ ...|.+.|++++|...|+++. +.+...|.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999986432 44 555555 445999999999999999865 45788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHH------
Q 043370 143 SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCV------ 215 (430)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l------ 215 (430)
.+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+++.+. .| +...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998763 556889999999999999999999999999854 34 34444444
Q ss_pred ------HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 216 ------VDLLGRCGYLDEAAALIRNM-PVKAN-----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 216 ------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
...+.+.|++++|...|+++ ...|+ ...|..+...+...|++++|...++++.+..|.++.+|..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 88899999999999999988 33444 4578888899999999999999999999999999999999999
Q ss_pred HHHhccchhHHHHHHHHHHhC
Q 043370 284 IHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+|...|++++|...+++..+.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=186.39 Aligned_cols=273 Identities=10% Similarity=0.042 Sum_probs=236.0
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----HHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK----ITFV 76 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 76 (430)
.+..++..+...|.+.|++++|...|+++. ..+...|..+...|.+.|++++|++.|+++.+. .|+. ..+.
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 135 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQS 135 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHH
Confidence 467789999999999999999999999875 346889999999999999999999999999976 3443 4555
Q ss_pred HH------------HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHH
Q 043370 77 SV------------ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLW 141 (430)
Q Consensus 77 ~l------------l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~ 141 (430)
.+ ...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++. +.+..+|
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 55 444888999999999999999875 3488999999999999999999999999875 4578999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH------------HHHhhhcCcHHHHHHHHHHHhhhcCCccC
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DVTFVSL------------LYACSHCGLKEKGMEFFDLMVKKYRRKPR 208 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 208 (430)
+.+...|...|++++|+..|+++.+. .|+ ...+..+ ...|.+.|++++|..+|+++.+. .|+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~ 289 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPS 289 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc
Confidence 99999999999999999999999875 444 3444444 78899999999999999999864 344
Q ss_pred -----HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 209 -----LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 209 -----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
..++..+..++.+.|++++|...++++ ...| +...|..+..+|...|++++|...++++.+++|.++.++..+
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 458899999999999999999999987 4445 688999999999999999999999999999999998888888
Q ss_pred HHH
Q 043370 282 SNI 284 (430)
Q Consensus 282 ~~~ 284 (430)
..+
T Consensus 370 ~~~ 372 (450)
T 2y4t_A 370 EKA 372 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 844
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-19 Score=169.16 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=250.7
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
|+..+..+...+.+.|++++|...|+++. ..+...|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 56778889999999999999999999874 3468899999999999999999999999999864 4467889999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCC--CcHhHHHHH------------HHHHHhcCCHHHHHHHHhccC---CCCHhHHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGAS--LDVGVISSL------------ISMYSRCGCLDDSVKTFLECE---YSDVVLWSSM 144 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~l 144 (430)
+...|++++|...++.+.+.... .+...+..+ ...+...|++++|...|+++. +.+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999886431 245555555 688999999999999999864 4578899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH-----------
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT----------- 213 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 213 (430)
...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998863 5567889999999999999999999999998642 22333332
Q ss_pred -HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 214 -CVVDLLGRCGYLDEAAALIRNM-PVKAN-A----IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 214 -~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
.+...+.+.|++++|...++++ ...|+ . ..|..+...+...|+++.|...++++.+.+|.++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3366789999999999999987 33343 2 235557778999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHhC
Q 043370 287 SAKRWQGVSEFREAMRER 304 (430)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~ 304 (430)
..|++++|...+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999998754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-20 Score=167.74 Aligned_cols=286 Identities=9% Similarity=-0.005 Sum_probs=203.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVI 79 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 79 (430)
+.++.++..+...+...|++++|.++|+++. ..+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4455666777777778888888888877764 2344566667777778888888888888877753 34566777777
Q ss_pred HHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChH
Q 043370 80 SSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGE 155 (430)
Q Consensus 80 ~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~ 155 (430)
..+...| ++++|.+.++++.+... .+..++..+...|...|++++|...|++.. +.+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 78888888887776643 356677778888888888888888887654 334566777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC-------CccCHhHHHHHHHHHhhcCCHHHH
Q 043370 156 EAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR-------RKPRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 228 (430)
+|++.|++..+.. +.+..++..+...+...|++++|...++++.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888877653 44566777777778888888888888877765311 123356777778888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH-Hhccch
Q 043370 229 AALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH-ASAKRW 291 (430)
Q Consensus 229 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 291 (430)
...+++. ...| +...|..+...+...|++++|...++++.+++|+++.++..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8877776 2223 4566777777788888888888888888888887777777777776 344443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=177.19 Aligned_cols=297 Identities=9% Similarity=-0.023 Sum_probs=174.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD-------- 71 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------- 71 (430)
.||..++..+..+|.+.|++++|...|+++. ..+...|..+..+|.+.|++++|+..|+++.+.+. ++
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHH
Confidence 4778888888999999999999998888764 34667888888888899999999888888866541 11
Q ss_pred -----------------------------------------------------------------------HHHHHHHHH
Q 043370 72 -----------------------------------------------------------------------KITFVSVIS 80 (430)
Q Consensus 72 -----------------------------------------------------------------------~~t~~~ll~ 80 (430)
...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 122222222
Q ss_pred HHh---ccCChHHHHHHHHHHHH-----c--CC------CCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--CC------
Q 043370 81 SCS---ELATLGQGQQIHAEVVK-----A--GA------SLDVGVISSLISMYSRCGCLDDSVKTFLECE--YS------ 136 (430)
Q Consensus 81 ~~~---~~g~~~~a~~~~~~~~~-----~--g~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~------ 136 (430)
.+. +.|++++|...++++.+ . .. +.+..++..+...|...|++++|...|+++. .|
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 274 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI 274 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 222 25667777777766665 2 10 1234556666666677777777766665532 11
Q ss_pred ----------------------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc
Q 043370 137 ----------------------------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188 (430)
Q Consensus 137 ----------------------------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 188 (430)
+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|+
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCC
Confidence 33344445555555555555555555555432 2234445555555555555
Q ss_pred HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCh
Q 043370 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKAN----AIIWKTLLSACKT---HKST 257 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~---~~~~ 257 (430)
+++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ +..|+ ...|..+...+.. .|++
T Consensus 354 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 354 FDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 55555555555442 1223445555555566666666666555554 11111 2255555555555 5666
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 258 DMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+.|...++++.+..|.++.++..+..+|...|++++|...+++..+
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666666665665555666666666666666666666665544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=177.16 Aligned_cols=294 Identities=9% Similarity=-0.030 Sum_probs=251.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
...+..+...|.+.|++++|...|+++. .||...|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4567778899999999999999999885 4799999999999999999999999999999875 556788999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCC----------------------------------------------------------
Q 043370 84 ELATLGQGQQIHAEVVKAGASL---------------------------------------------------------- 105 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~---------------------------------------------------------- 105 (430)
..|++++|...|+.+.+.+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999998765311
Q ss_pred --------------------cHhHHHHHHHHHHh---cCCHHHHHHHHhccCC-----------------CCHhHHHHHH
Q 043370 106 --------------------DVGVISSLISMYSR---CGCLDDSVKTFLECEY-----------------SDVVLWSSMI 145 (430)
Q Consensus 106 --------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----------------~d~~~~~~li 145 (430)
+...+..+...+.. .|++++|...|+++.. .+..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 13333334444443 8999999999987543 2457888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 225 (430)
..+...|++++|+..|+++.+.. |+..++..+...+...|++++|...++.+.+. .+.+...+..+...|...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999998864 44788889999999999999999999999753 234678899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 226 DEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
++|...+++. ...| +...|..+...+...|+++.|...++++.+..|.++.++..++.+|...|++++|...++++.+
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 3344 5678888989999999999999999999999999999999999999999999999999998875
Q ss_pred C
Q 043370 304 R 304 (430)
Q Consensus 304 ~ 304 (430)
.
T Consensus 401 ~ 401 (514)
T 2gw1_A 401 L 401 (514)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=160.57 Aligned_cols=264 Identities=11% Similarity=0.042 Sum_probs=229.6
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++++.+... .+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 356677788899999999999999999998864 44566677788888999999999999999998753 3788899999
Q ss_pred HHHHhcC-CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH
Q 043370 115 SMYSRCG-CLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE 190 (430)
Q Consensus 115 ~~~~~~g-~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 190 (430)
..|...| ++++|...|++.. +.+...|..+...|...|++++|+..|++..+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999864 3467889999999999999999999999998864 345677778999999999999
Q ss_pred HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCChhH
Q 043370 191 KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV----------KANAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 191 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~~~~~~ 259 (430)
+|...++++.+. .+.+...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999863 3446788999999999999999999999876 11 2246788999999999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 260 AGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|...++++.+..|.++.++..+..+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999997644
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-18 Score=157.44 Aligned_cols=282 Identities=10% Similarity=0.031 Sum_probs=233.4
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC----CHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP----DKITFV 76 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~ 76 (430)
.+..++..+...|...|++++|...|+++. ..+...|..+...+.+.|++++|+..|++..+. .| +...+.
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 112 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAES 112 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHH
Confidence 346788999999999999999999999865 347789999999999999999999999999876 44 444444
Q ss_pred HH------------HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHH
Q 043370 77 SV------------ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLW 141 (430)
Q Consensus 77 ~l------------l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~ 141 (430)
.+ ...+...|++++|...++.+.+... .+..++..+...|.+.|++++|...|++.. +.+...|
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 191 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 44 5778899999999999999998754 478899999999999999999999999864 4578899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV------------SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL 209 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 209 (430)
..+...|...|++++|...|++..+.. +.+...+. .+...+...|++++|...++.+.+...-.+..
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 270 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY 270 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 999999999999999999999998763 22333332 23666889999999999999998752211111
Q ss_pred --hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 210 --EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 210 --~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
..+..+...|.+.|++++|...+++. ...| +..+|..+...+...|++++|...++++.+++|.++..+..+..++
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34566888999999999999999988 3345 6888999999999999999999999999999998888888887776
Q ss_pred Hhcc
Q 043370 286 ASAK 289 (430)
Q Consensus 286 ~~~g 289 (430)
...+
T Consensus 351 ~~~~ 354 (359)
T 3ieg_A 351 RLLK 354 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-19 Score=163.79 Aligned_cols=281 Identities=9% Similarity=-0.055 Sum_probs=225.9
Q ss_pred HHHHcCChHHHHH-HHccCCC-----C--CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 15 MYMKSGSLVEGEK-VIRLMPI-----R--NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 15 ~~~~~g~~~~A~~-~f~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
.|.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678888888 7775431 1 35678889999999999999999999999874 557888999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHH---------------HHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSS---------------MIAAY 148 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~---------------li~~~ 148 (430)
++++|...++++++... .+..++..+...|...|++++|...|+++.. .+...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999998863 4788999999999999999999999987642 22222221 23334
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998863211 4788999999999999999999999999864 23457889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC-----------ChhHHHHHHHHHhccchhHH
Q 043370 228 AAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD-----------AAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 228 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 294 (430)
|...++++ ...| +...|..+...+...|++++|...++++.++.|.+ ..+|..+..+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3344 57889999999999999999999999999887765 68999999999999999999
Q ss_pred HHHHH
Q 043370 295 SEFRE 299 (430)
Q Consensus 295 ~~~~~ 299 (430)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=171.82 Aligned_cols=241 Identities=12% Similarity=0.073 Sum_probs=114.7
Q ss_pred HHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043370 17 MKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHA 96 (430)
Q Consensus 17 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 96 (430)
-+.|++++|.+++++++.|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37789999999999997664 899999999999999999999965 3578899999999999999999999888
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043370 97 EVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176 (430)
Q Consensus 97 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 176 (430)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45678899999999999999999988864 67789999999999999999999999977 368
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKS 256 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~ 256 (430)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 99999999999999999999987 26789999999999999999998877766655554 4468889999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 257 TDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
+++|..+++..+++++.....|..|..+|++-
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999988889999998888765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-17 Score=163.91 Aligned_cols=226 Identities=12% Similarity=-0.000 Sum_probs=168.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhc
Q 043370 75 FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 75 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~ 151 (430)
+..+...+...|++++|...++.+.+.. |+..++..+...|...|++++|...|++.. +.+..+|..+...|...
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 4444455566677777777777777753 346677777777888888888888877654 34677788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
|++++|+..|++..+.. +.+..++..+...+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|...
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 88888888888887753 334567777888888888888888888888764 233566778888888888888888888
Q ss_pred HHhC----CCCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH
Q 043370 232 IRNM----PVKA----NAIIWKTLLSACKTH----------KSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 232 ~~~m----~~~p----~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
++++ +..+ ....+..+...+... |++++|...++++.+..|.++.++..+..+|...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 8876 1111 222233444556666 888999999999988888888889999999999999999
Q ss_pred HHHHHHHHHhCC
Q 043370 294 VSEFREAMRERN 305 (430)
Q Consensus 294 a~~~~~~m~~~g 305 (430)
|.+.+++..+..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999998886643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=163.17 Aligned_cols=261 Identities=8% Similarity=-0.045 Sum_probs=217.1
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45668899999999999999999999999864 55788999999999999999999999999998753 47889999999
Q ss_pred HHHhcCCHHHHHHHHhccCCC---C----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYS---D----------VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE-ANDVTFVSLLY 181 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~---d----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 181 (430)
.|.+.|++++|...|+++... + ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999987532 1 223345588899999999999999999886421 15788999999
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 259 (430)
.+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|...|+++ ...| +..+|..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 2346789999999999999999999999987 4445 58889999999999999999
Q ss_pred HHHHHHHHhcCCCC------------CChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 260 AGRIAEEILGVNPQ------------DAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 260 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
|...++++.++.|. +...|..|..++...|+.+.+..+.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999877664 367899999999999999988877653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-18 Score=165.12 Aligned_cols=294 Identities=10% Similarity=0.025 Sum_probs=240.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
...+..+...|.+.|++++|...|+++. ..+...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3567888899999999999999999875 3478999999999999999999999999999875 55788899999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcH-------------------------------------h-----------------
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDV-------------------------------------G----------------- 108 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~-------------------------------------~----------------- 108 (430)
...|++++|...++.+ .....+.. .
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999998633 21111100 0
Q ss_pred -------------HHHHHHHHHHh--------cCCHHHHHHHHhccCC--C-C-------HhHHHHHHHHHHhcCChHHH
Q 043370 109 -------------VISSLISMYSR--------CGCLDDSVKTFLECEY--S-D-------VVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 109 -------------~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~-d-------~~~~~~li~~~~~~g~~~~A 157 (430)
....+...+.. .|++++|..+|+++.. | + ..+|..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 22222222222 2478889999988653 2 2 23567777888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
+..|++..+. .|+..++..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++. .
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999986 566888899999999999999999999999864 2346788999999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 237 VKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 237 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..| +...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|...+++..+..
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 334 467888899999999999999999999999999999999999999999999999999999987644
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-17 Score=147.21 Aligned_cols=270 Identities=9% Similarity=-0.008 Sum_probs=219.7
Q ss_pred HHHHHcCChHHHHHHHccCCCCCH----HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 043370 14 HMYMKSGSLVEGEKVIRLMPIRNV----IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLG 89 (430)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 89 (430)
.-....|+++.|+..++.....+. ...-.+.++|...|++++|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 445568999999999988765432 3556678999999999999987754 2 3677888999999999999999
Q ss_pred HHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043370 90 QGQQIHAEVVKAGA-SLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 90 ~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 168 (430)
+|.+.++++++.+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999998764 44677888889999999999999999999 568889999999999999999999999999886
Q ss_pred CCCCHHHH---HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 043370 169 FEANDVTF---VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAII 243 (430)
Q Consensus 169 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 243 (430)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|...|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3654321 12233444569999999999999875 3567889999999999999999999999997 4445 6778
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHH
Q 043370 244 WKTLLSACKTHKSTDM-AGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
|..++..+...|+.++ +.++++++.+++|+++.+ .+...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9999999999999876 678999999999977654 3445566666665443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=153.11 Aligned_cols=259 Identities=8% Similarity=-0.051 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445666677777777777777777777653 3456667777777777777777777777777764 3366777777777
Q ss_pred HHhcCCHHHHHHHHhccCC---CCHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEY---SDVVLWSSM--------------IA-AYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~---~d~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 178 (430)
|...|++++|.+.|+++.. .+...+..+ .. .+...|++++|++.++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 7778888888777776532 122222222 22 3777889999999999998864 446788889
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKS 256 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 256 (430)
+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...++++ ...| +...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998864 2345788999999999999999999999987 3334 57889999999999999
Q ss_pred hhHHHHHHHHHhcCCCC------------CChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 257 TDMAGRIAEEILGVNPQ------------DAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+++|...++++.+..|. ++.++..+..+|...|++++|..++++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999988886 678899999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-18 Score=158.97 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=212.2
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+...+..+...|.+.|++++|...|+++. ..+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34558889999999999999999999875 3478899999999999999999999999999864 4568899999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCC---------cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CC--CHhHHHHHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASL---------DVGVISSLISMYSRCGCLDDSVKTFLECE---YS--DVVLWSSMIAA 147 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~--d~~~~~~li~~ 147 (430)
+...|++++|...++++.+..... ...++..+...|.+.|++++|...|+++. +. +..+|..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999998864220 12233456889999999999999999865 23 68899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
|...|++++|++.|++..+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+..+|.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998863 456889999999999999999999999999864 23357889999999999999999
Q ss_pred HHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 228 AAALIRNM-PVKA-------------NAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 228 A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
|...|+++ ...| +..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999987 1111 267899999999999999998887665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=156.14 Aligned_cols=276 Identities=11% Similarity=0.009 Sum_probs=204.2
Q ss_pred CChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHhccCChHHHHHHH
Q 043370 20 GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLD-QYNLMRMVGF-RP--DKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 20 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
+.++.+...|+.+...+.. ++...|++++|+. .|++..+... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555433322 3445688999998 8887664321 11 3456788889999999999999999
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN 172 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 172 (430)
+++++.. +.+..++..+...|.+.|++++|...|+++. +.+..+|..+...|...|++++|++.|+++.+.. +.+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 165 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAY 165 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCc
Confidence 9999875 3478899999999999999999999999764 4578899999999999999999999999998864 222
Q ss_pred HHHHHH---------------HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 173 DVTFVS---------------LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 173 ~~t~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
...+.. .+..+...|++++|..+++++.+.....++...+..+...|.+.|++++|...++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222211 233344889999999999999875222225788999999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 237 VKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 237 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..| +..+|..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|...+++..+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344 57889999999999999999999999999999999999999999999999999999999988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=163.65 Aligned_cols=266 Identities=9% Similarity=0.071 Sum_probs=137.4
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
+++.+|+.|+.++.+.|++++|++.|.+. +|...|..++.++.+.|++++|+..++..++. .+++.+.+.++.+|.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 44569999999999999999999999764 57779999999999999999999977766663 566888999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 163 (430)
+.|+++++.++++ .|+..+|+.+++.|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+++
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998885 367789999999999999999999999987 4799999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 043370 164 MEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NA 241 (430)
Q Consensus 164 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 241 (430)
+ .+..||..++.+|...|+++.|......+ ...+.....++..|.+.|++++|..+++.. +..+ ..
T Consensus 174 A------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~ 241 (449)
T 1b89_A 174 A------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 241 (449)
T ss_dssp H------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred c------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH
Confidence 8 27899999999999999999996655443 234445667999999999999999999876 5544 57
Q ss_pred HHHHHHHHHHHhcC--ChhHHHHHHHHHhcCCC-----CCChhHHHHHHHHHhccchhHHHHH
Q 043370 242 IIWKTLLSACKTHK--STDMAGRIAEEILGVNP-----QDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 242 ~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
..|+-|--+|++.+ +..+.++.|..-..+.| .+...|.-++..|.+.++++.|..+
T Consensus 242 ~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 242 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 77887777777663 34444444443334445 5789999999999999999998774
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=179.30 Aligned_cols=147 Identities=12% Similarity=0.150 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC-------CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP-------IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
..+||+||++|+++|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997653 689999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHhHHHHHHHHHHhcC
Q 043370 79 ISSCSELATL-GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-----DVVLWSSMIAAYGFHG 152 (430)
Q Consensus 79 l~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~~~g 152 (430)
|.++++.|+. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++.++..+ .+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999888877777766665555421 2334444556666554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-17 Score=147.92 Aligned_cols=260 Identities=10% Similarity=0.023 Sum_probs=217.1
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+...+..+...+.+.|++++|..+|+++. ..+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34556788899999999999999999874 3478899999999999999999999999999864 5578889999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHH--------------HH-HHHhcCCHHHHHHHHhccC---CCCHhHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSL--------------IS-MYSRCGCLDDSVKTFLECE---YSDVVLWSS 143 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~---~~d~~~~~~ 143 (430)
+...|++++|.+.++.+.+.... +...+..+ .. .+...|++++|...|+++. +.+...|..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 99999999999999999986433 33333333 33 4888999999999998864 447889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 223 (430)
+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998863 446788999999999999999999999999864 2346788999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 224 YLDEAAALIRNM-PVKA-------------NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 224 ~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
++++|.+.++++ ...| +...|..+...+...|+.+.|..++++.++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999887 2223 367889999999999999999999886553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-17 Score=145.68 Aligned_cols=246 Identities=8% Similarity=0.055 Sum_probs=203.1
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 44 IAGKAQNGLAEDVLDQYNLMRMVGFRPDK--ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 44 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
|+-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34466789999999999876543 4543 3556778899999999999976644 24567888999999999999
Q ss_pred CHHHHHHHHhccC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 122 CLDDSVKTFLECE-----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 122 ~~~~A~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
+.++|.+.++++. +.+...+..+...|.+.|++++|++.|++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23677788888999999999999999987 467788999999999999999999999
Q ss_pred HHHhhhcCCccCHh---HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 197 DLMVKKYRRKPRLE---HYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 197 ~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
+.+.+. .|+.. .....+..+...|++++|..+|+++ ....+...|+.+..++...|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 35432 1223445555679999999999998 223478899999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhccchhH-HHHHHHHHHhC
Q 043370 272 PQDAAPYVLLSNIHASAKRWQG-VSEFREAMRER 304 (430)
Q Consensus 272 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 304 (430)
|.++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888887654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-19 Score=175.58 Aligned_cols=129 Identities=6% Similarity=0.053 Sum_probs=113.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECE-------YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 178 (430)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999997753 57999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCc-HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 179 LLYACSHCGL-KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 179 ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999997 57899999999887 99999999999998887776555555554333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-16 Score=135.33 Aligned_cols=223 Identities=10% Similarity=-0.018 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--Cc----HhHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS--LD----VGVI 110 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~----~~~~ 110 (430)
...|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|...+..+.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776665 56666777777777777777777777766654211 11 3555
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 188 (430)
..+...|.+.|++++|...|++... ++ ...+...|++++|+..++++.... +.+...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 5666666666666666666655432 22 123444455666666666655531 2223445555555556666
Q ss_pred HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
+++|...++++.+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|+.+.|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666665543 1223455555555555666666665555554 2222 345555555556666666666666666
Q ss_pred HhcCC
Q 043370 267 ILGVN 271 (430)
Q Consensus 267 ~~~~~ 271 (430)
+.++.
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 55554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-15 Score=130.28 Aligned_cols=220 Identities=10% Similarity=0.003 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C-------HhHH
Q 043370 72 KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--S-D-------VVLW 141 (430)
Q Consensus 72 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d-------~~~~ 141 (430)
...+..+...+...|++++|...++++++.. .+..++..+..+|...|++++|...|++... | + ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888889999999999999999999987 6889999999999999999999999988652 1 2 6889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
..+...|...|++++|+..|++..+. .|+. ..+...|++++|...++.+... .+.+...+..+...|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999885 4553 3456678899999999998753 23356788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHH
Q 043370 222 CGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 222 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
.|++++|...+++. ...| +..+|..+...+...|++++|...++++.+..|.++.++..+..+|...|++++|...++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999987 3333 678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 043370 300 AMRER 304 (430)
Q Consensus 300 ~m~~~ 304 (430)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-15 Score=130.85 Aligned_cols=241 Identities=10% Similarity=-0.062 Sum_probs=185.5
Q ss_pred HCCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGF---RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 125 (430)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...++++++... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 45778889999988887531 11456677888888888999999999988888753 367888889999999999999
Q ss_pred HHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 126 SVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 126 A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
|.+.|++.. +.+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999988764 346788899999999999999999999999875 455555555555667779999999999887764
Q ss_pred cCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh
Q 043370 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA 276 (430)
Q Consensus 203 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 276 (430)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++.+.+|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 4777788888889999998876 33332 577888889999999999999999999999996655
Q ss_pred hHHHHHHHHHhccchhHHHHHH
Q 043370 277 PYVLLSNIHASAKRWQGVSEFR 298 (430)
Q Consensus 277 ~~~~l~~~~~~~g~~~~a~~~~ 298 (430)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 55777888888887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-15 Score=130.18 Aligned_cols=239 Identities=9% Similarity=-0.032 Sum_probs=119.5
Q ss_pred HHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD--KITFVSVISSCSE 84 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~ 84 (430)
......|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+.+-.|+ ..+|..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 344455555555555555555432 12333555555555555555555555555554221111 1224455555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHH-HHHHhcCChHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMI-AAYGFHGKGEEAINL 160 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li-~~~~~~g~~~~A~~~ 160 (430)
.|++++|...++.+.+.... +..++..+...|.+.|++++|...|++... .+...|..+. ..|. .+++++|++.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 55555555555555554322 344555555555555555555555554431 2334444444 2222 2355555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC---HHHHHHHHHhC--
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY---LDEAAALIRNM-- 235 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-- 235 (430)
|++..+. .|+ +...+..+...+...|+ +++|...+++.
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5554443 122 23333334444444443 33333333333
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 236 --PVKAN------AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 236 --~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
...|+ ..+|..+...|...|+++.|...++++.+++|.++.+...+......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 11122 24566677778888899999999999988888887777666554433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-15 Score=127.17 Aligned_cols=195 Identities=12% Similarity=-0.024 Sum_probs=140.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 104 SLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180 (430)
Q Consensus 104 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 180 (430)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3455666677777777777777777777643 3456677777777777777777777777777653 33456666777
Q ss_pred HHhhhc-----------CcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 043370 181 YACSHC-----------GLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTL 247 (430)
Q Consensus 181 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 247 (430)
..+... |++++|...+++..+. .| +...+..+..+|...|++++|...|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 777777 8999999999888754 34 5677888888999999999999998877 111678888899
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
...+...|++++|...++++++.+|.++.++..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-14 Score=134.65 Aligned_cols=246 Identities=8% Similarity=0.038 Sum_probs=207.7
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT-LGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
+...|+.+...+.+.|++++|++.|++.++.. +-+...|..+..++...|+ +++|...++++++.... +..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 45788899999999999999999999999864 4467789999999999996 99999999999998654 889999999
Q ss_pred HHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh-cCcHH
Q 043370 115 SMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH-CGLKE 190 (430)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 190 (430)
.+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999865 5588999999999999999999999999999874 3467889999888888 66657
Q ss_pred HH-----HHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 043370 191 KG-----MEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCG--YLDEAAALIRNMPVKA-NAIIWKTLLSACKTHK------ 255 (430)
Q Consensus 191 ~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~------ 255 (430)
+| ...+++.++. .| +...|..+..+|.+.| ++++|.+.++++...| +...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5888888753 45 5678899999999988 6899999998885455 5677888888888764
Q ss_pred ---ChhHHHHHHHHH-hcCCCCCChhHHHHHHHHHh
Q 043370 256 ---STDMAGRIAEEI-LGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 256 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 287 (430)
..++|..+++++ .+++|.....|..+...+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999888888877776653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-14 Score=123.94 Aligned_cols=194 Identities=13% Similarity=0.048 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++.++..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45566666667777777777777777776653 345566666777777777777777777777666432 5666666777
Q ss_pred HHHhc-----------CCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 116 MYSRC-----------GCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181 (430)
Q Consensus 116 ~~~~~-----------g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 181 (430)
.|.+. |++++|...|++.. +.+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77776 77777777776643 3356677777777777777777777777777665 56666777777
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
++...|++++|...|++..+. .+.+...+..+..++.+.|++++|...+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777653 1224566667777777777777777776654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-14 Score=135.22 Aligned_cols=297 Identities=10% Similarity=-0.012 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC-------C----CCHHHHHHHHHHHHHC--CChhHHHHHHHHHHHCCCCCCH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP-------I----RNVIAWITLIAGKAQN--GLAEDVLDQYNLMRMVGFRPDK 72 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~ 72 (430)
..+|+.+..+|...|++++|...|++.. . ....+++.+..++... +++++|+..|++.++.. +-+.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~ 172 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNP 172 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCH
Confidence 3578999999999999999998887642 1 1356777776666654 57999999999998863 3344
Q ss_pred HHHHHHHHH---HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC---CCCHhHHH
Q 043370 73 ITFVSVISS---CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE---YSDVVLWS 142 (430)
Q Consensus 73 ~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~d~~~~~ 142 (430)
..+..+..+ +...++.++|.+.+++.++..+. +..++..+...+.+ .|++++|.+.|++.. +.+...++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~ 251 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHH
Confidence 555554444 34567778899999998887533 66666666655554 467788999998753 45788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc-------------------CcHHHHHHHHHHHhhhc
Q 043370 143 SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC-------------------GLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------------g~~~~a~~~~~~~~~~~ 203 (430)
.+...|...|++++|+..|++..+.. +-+..++..+...|... +..++|...++...+.
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 329 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA- 329 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-
Confidence 99999999999999999999998863 33455666665554322 3356777888877653
Q ss_pred CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH----HHHHHH-HHHhcCChhHHHHHHHHHhcC-------
Q 043370 204 RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAII----WKTLLS-ACKTHKSTDMAGRIAEEILGV------- 270 (430)
Q Consensus 204 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~----~~~ll~-~~~~~~~~~~a~~~~~~~~~~------- 270 (430)
.+.+...+..+...|...|++++|.+.|++. ...|+... +..+.. .....|+.++|+..+++.+++
T Consensus 330 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 330 -NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp -CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred -CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 2335577888999999999999999999986 44444332 222222 245678899999888877654
Q ss_pred -----------------CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 271 -----------------NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 271 -----------------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
+|.++.+|..|..+|...|++++|.+.+++..+.|-.
T Consensus 409 ~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 409 EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 5777889999999999999999999999998776543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-12 Score=127.45 Aligned_cols=283 Identities=14% Similarity=0.050 Sum_probs=160.6
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHccCCC-CCHHHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 8 AGSSLAHMYMK----SGSLVEGEKVIRLMPI-RNVIAWITLIAGKAQ----NGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 8 ~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
.+..|..+|.. .++.++|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+..+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 153 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSM 153 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 44444555555 5555555555554332 244445555555555 455555555555555443 33444444
Q ss_pred HHHHhc----cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHHHHHH
Q 043370 79 ISSCSE----LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMIAAYG 149 (430)
Q Consensus 79 l~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~ 149 (430)
...+.. .++.++|.+.|++..+.| +...+..|..+|.. .++.++|.+.|+... ..+..++..+...|.
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYY 230 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444443 445555555555555543 44555555555555 555666666555433 234455555555555
Q ss_pred h----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 150 F----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 150 ~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
. .+++++|+.+|++..+.| +...+..+...+.. .++.++|..+|++..+. + +...+..|..+|..
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc
Confidence 4 556666666666665543 33344444444544 56666777776666543 2 34455556666666
Q ss_pred c-----CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh----cc
Q 043370 222 C-----GYLDEAAALIRNMPVKANAIIWKTLLSACKTHK---STDMAGRIAEEILGVNPQDAAPYVLLSNIHAS----AK 289 (430)
Q Consensus 222 ~-----g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g 289 (430)
. +++++|...+++.-...+...+..+...|...| +.++|...+++..+. .++.++..|..+|.. .+
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC
Confidence 5 677777777766522234555666666665545 667777777777665 356777778888877 77
Q ss_pred chhHHHHHHHHHHhCC
Q 043370 290 RWQGVSEFREAMRERN 305 (430)
Q Consensus 290 ~~~~a~~~~~~m~~~g 305 (430)
++++|...+++..+.|
T Consensus 382 ~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQG 397 (490)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCC
Confidence 8888888888777655
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-12 Score=124.53 Aligned_cols=286 Identities=10% Similarity=-0.035 Sum_probs=240.1
Q ss_pred chhHHHHHHHHHHH----cCChHHHHHHHccCC-CCCHHHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHHHH
Q 043370 5 DLVAGSSLAHMYMK----SGSLVEGEKVIRLMP-IRNVIAWITLIAGKAQ----NGLAEDVLDQYNLMRMVGFRPDKITF 75 (430)
Q Consensus 5 ~~~~~~~li~~~~~----~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 75 (430)
|+.....|...|.. .++++.|...|++.. ..+...+..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55677778888888 899999999998765 3478889999999999 999999999999998876 56777
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHHH
Q 043370 76 VSVISSCSE----LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMIA 146 (430)
Q Consensus 76 ~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li~ 146 (430)
..+...+.. .+++++|...|++..+.| +...+..|..+|.. .++.++|.+.|++.. ..+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888877 789999999999998876 67788889999988 889999999998754 457888999999
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 147 AYGF----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 147 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
.|.. .++.++|++.|++..+.| +...+..+...+.. .++.++|..+|++..+. + +...+..+..+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 9988 899999999999998875 55667777777775 78999999999998764 3 45667777778
Q ss_pred Hhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc
Q 043370 219 LGR----CGYLDEAAALIRNMPVKANAIIWKTLLSACKTH-----KSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK 289 (430)
Q Consensus 219 ~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 289 (430)
|.. .+++++|...|++.-...+...+..|...|... ++.++|...+++..+.+ ++.++..|..+|...|
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 877 899999999999883334677777788888877 89999999999998775 4578889999998866
Q ss_pred ---chhHHHHHHHHHHhCC
Q 043370 290 ---RWQGVSEFREAMRERN 305 (430)
Q Consensus 290 ---~~~~a~~~~~~m~~~g 305 (430)
++++|.+.+++..+.|
T Consensus 343 ~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHCC
Confidence 8899999999988765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=121.08 Aligned_cols=205 Identities=13% Similarity=0.046 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4556666666666666666666666666542 33455555555566666666666666665555432 134444444444
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
|...|++ ++|++.|+++.+.+..| +...+..+...+...|++++|...
T Consensus 115 ~~~~g~~-------------------------------~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRY-------------------------------EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCH-------------------------------HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHH-------------------------------HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444 44444444443321222 223344444444455555555555
Q ss_pred HHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
++++.+. .+.+...+..+...|.+.|++++|...++++ ...| +...+..+...+...|+.+.|...++++.+..|.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 5544432 1123444455555555555555555555544 2222 3444555555566666666666666666666664
Q ss_pred CCh
Q 043370 274 DAA 276 (430)
Q Consensus 274 ~~~ 276 (430)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-13 Score=120.04 Aligned_cols=195 Identities=9% Similarity=-0.067 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4678889999999999999999999864 3478899999999999999999999999998864 45778899999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASL-DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
...|++++|...++++.+.+..| +..++..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998733333 56778888889999999999999888754 346778888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
..|+++.+.. +.+...+..+...+...|+.++|.++++.+.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888887753 445666777777888888888888888888754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=122.92 Aligned_cols=195 Identities=10% Similarity=-0.052 Sum_probs=157.7
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCC--CC----HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPI--RN----VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
+..++..+...|.+.|++++|...|++... ++ ..+|..+...|...|++++|+..|++..+.. +.+..++..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 345888999999999999999999987643 22 3458999999999999999999999999864 4567889999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH-HHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC-
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI-SMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGK- 153 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~- 153 (430)
...+...|++++|...+++.++.. +.+..++..+. ..|. .+++++|.+.|++.. +.+...|..+...+...|+
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcc
Confidence 999999999999999999998874 34678888888 5555 559999999999865 3467888888888888888
Q ss_pred --hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 154 --GEEAINLFEQMEQKE-FEAND------VTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 154 --~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
+++|...|++..+.. -.|+. .++..+...+...|++++|...++++.+.
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888999999887642 12331 46667777888888888888888888753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-13 Score=118.84 Aligned_cols=223 Identities=9% Similarity=-0.050 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCcHhHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE----LATLGQGQQIHAEVVKAGASLDVGVIS 111 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 111 (430)
+..++..+...|...|++++|+..|++..+. -+..++..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566777777777888888888888877763 245666667777777 778888888888777765 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 112 SLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMIAAYGF----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 112 ~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
.+..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777777 778888877777644 2366777777777777 788888888888877765 44556666666
Q ss_pred hhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 043370 183 CSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR----CGYLDEAAALIRNM-PVKANAIIWKTLLSACKT 253 (430)
Q Consensus 183 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 253 (430)
+.. .++.++|...|++..+. + +...+..+..+|.. .+++++|...|++. ... +...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence 666 77888888888777653 2 34566667777777 77777777777765 222 35566666666776
Q ss_pred ----cCChhHHHHHHHHHhcCCC
Q 043370 254 ----HKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 254 ----~~~~~~a~~~~~~~~~~~p 272 (430)
.++.++|...+++..+.+|
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCC
Confidence 7777888888877777776
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-14 Score=126.64 Aligned_cols=239 Identities=8% Similarity=-0.108 Sum_probs=188.0
Q ss_pred HHcCChHHHHHHHccCCCC-------CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 043370 17 MKSGSLVEGEKVIRLMPIR-------NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLG 89 (430)
Q Consensus 17 ~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 89 (430)
...|++++|...|+++.+. +..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3467899999999876542 46789999999999999999999999999864 457889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+|...++++++... .+..++..+..+|.+.|++++|...|+++. .|+.......+..+...|++++|+..+++....
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999998753 368899999999999999999999999875 343334444555556779999999999888776
Q ss_pred CCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-----HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 043370 168 EFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-----LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANA 241 (430)
Q Consensus 168 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 241 (430)
. +++...+. ++..+...++.++|...+....+. .|+ ...+..+...|.+.|++++|...|++. ...|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 3 44544444 667778888889999999988643 332 578889999999999999999999988 556643
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
+.....++...|++++|...+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223344667778888887765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-14 Score=125.15 Aligned_cols=212 Identities=12% Similarity=0.088 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3445555555555556666666555555432 2344445555555555555555555555554432
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
+.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+
T Consensus 88 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 88 ------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1234444555555555555555555555555442 234445555555666666666666666
Q ss_pred HHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
+++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|...++++.+.+|.+
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 665543 1224555666666666667777776666665 2222 46677777777888888888888888888888877
Q ss_pred ChhHHHHHHH
Q 043370 275 AAPYVLLSNI 284 (430)
Q Consensus 275 ~~~~~~l~~~ 284 (430)
+.++..+...
T Consensus 227 ~~~~~~~~~l 236 (243)
T 2q7f_A 227 MLALHAKKLL 236 (243)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 6666555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-13 Score=116.83 Aligned_cols=206 Identities=6% Similarity=-0.055 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------- 73 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------------- 73 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------
Confidence 4455555555555566666665555555432 23344455555555555555555555555544321
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH-GKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGME 194 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 194 (430)
.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|++++|..
T Consensus 74 -------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 74 -------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 2333444444455555 555555555555544222222 3444445555555555555555
Q ss_pred HHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 195 FFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVK--ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
.++++.+. .+.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 55555432 1123445555555555556666655555554 111 234445555555666666666666666666666
Q ss_pred CCCChh
Q 043370 272 PQDAAP 277 (430)
Q Consensus 272 p~~~~~ 277 (430)
|.++..
T Consensus 213 p~~~~~ 218 (225)
T 2vq2_A 213 PYSEEL 218 (225)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 644443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-12 Score=128.69 Aligned_cols=165 Identities=11% Similarity=0.033 Sum_probs=115.9
Q ss_pred HhHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc
Q 043370 138 VVLWSSMIAAYGF-------HGKGE-------EAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 138 ~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 203 (430)
...|...+..+.+ .|+.+ +|..+|++..+.-.+-+...+..++..+.+.|++++|..+|+++.+.
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~- 350 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI- 350 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-
Confidence 3445555555554 57765 77888887765212334666777777778888888888888888753
Q ss_pred CCccC-H-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 204 RRKPR-L-EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSA-CKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 204 ~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
.|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|+.+.|..+|++.++..|+++..|
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 443 2 46777777778888888888888876 33332 2222222112 3458889999999999988888888889
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 279 VLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 279 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..++..+.+.|+.++|..++++....+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 899999999999999999999887653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-13 Score=116.55 Aligned_cols=197 Identities=7% Similarity=-0.056 Sum_probs=162.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45678899999999999999999998764 3468899999999999999999999999998864 5577889999999
Q ss_pred Hhcc-CChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHH
Q 043370 82 CSEL-ATLGQGQQIHAEVVKAGASL-DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEE 156 (430)
Q Consensus 82 ~~~~-g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~ 156 (430)
+... |++++|...++.+.+.+..| +..++..+...|.+.|++++|...|+++. +.+...|..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999 99999999999998832223 46778888889999999999999888754 3467788888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 157 AINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 157 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
|...|++..+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9998888877532145666777777778888888888888887643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.7e-14 Score=131.35 Aligned_cols=265 Identities=12% Similarity=0.060 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-cH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD----KITFVSVISSCSELATLGQGQQIHAEVVKA----GASL-DV 107 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~ 107 (430)
...+..+...+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...++++.+. +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3344444555555555555555555555432 112 133444555555555555555555544322 1111 13
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHH
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGK--------------------GEEAI 158 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~ 158 (430)
.++..+...|...|++++|...|++... .+ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3445555555555555555555554321 11 2345555555666666 66666
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHH
Q 043370 159 NLFEQMEQK----EFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 159 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 229 (430)
+.+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 665554321 11111 234555556666666666666666665432111111 235556666666666666666
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------CChhHHHHHHHHHhccchhHHH
Q 043370 230 ALIRNM----PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------DAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 230 ~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
..+++. +..++ ..++..+...+...|++++|...+++..+..+. ...++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666554 10111 345555666666677777777776666544321 1345666667777777777777
Q ss_pred HHHHHHH
Q 043370 296 EFREAMR 302 (430)
Q Consensus 296 ~~~~~m~ 302 (430)
+.+++..
T Consensus 328 ~~~~~al 334 (406)
T 3sf4_A 328 HFAEKHL 334 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-14 Score=133.93 Aligned_cols=265 Identities=11% Similarity=0.032 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCcHh
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK----ITFVSVISSCSELATLGQGQQIHAEVVKA----G-ASLDVG 108 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~ 108 (430)
..+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++.++. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345566778999999999999999998863 2233 46788888899999999999999988653 1 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---------CCHhHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECEY---------SDVVLWSSMIAAYGFHGK-----------------GEEAINLFE 162 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~d~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 162 (430)
++..+...|...|++++|...|++... ....+|..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 788899999999999999999987542 134578888999999999 999999998
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHHHH
Q 043370 163 QMEQK----EFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAALIR 233 (430)
Q Consensus 163 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 233 (430)
+..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86542 1112 2346778888999999999999999988754211112 2378889999999999999999998
Q ss_pred hC-CC---CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------CChhHHHHHHHHHhccchhHHHHHHH
Q 043370 234 NM-PV---KA----NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------DAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 234 ~m-~~---~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+. .. .. ...++..+...+...|++++|...+++..+..+. ...++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 11 11 2567788888899999999999999999865432 24588899999999999999999999
Q ss_pred HHHh
Q 043370 300 AMRE 303 (430)
Q Consensus 300 ~m~~ 303 (430)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-12 Score=115.66 Aligned_cols=223 Identities=10% Similarity=-0.043 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMI 145 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li 145 (430)
+..++..+...+...|++++|.+.+++..+. .+...+..+...|.. .|++++|...|++.. ..+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5677888888899999999999999999983 366788889999999 999999999999865 34788999999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 146 AAYGF----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 146 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .++.++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888889998 99999999999999874 3 5667788888
Q ss_pred HHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh--
Q 043370 218 LLGR----CGYLDEAAALIRNMPVKANAIIWKTLLSACKT----HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS-- 287 (430)
Q Consensus 218 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 287 (430)
.|.. .+++++|...|++.-...+...+..+...+.. .++.++|...+++..+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999987222367778888888999 9999999999999998876 6788999999999
Q ss_pred --ccchhHHHHHHHHHHhCC
Q 043370 288 --AKRWQGVSEFREAMRERN 305 (430)
Q Consensus 288 --~g~~~~a~~~~~~m~~~g 305 (430)
.+++++|.+.+++..+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999987766
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=125.49 Aligned_cols=265 Identities=12% Similarity=0.051 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CcHhH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD----KITFVSVISSCSELATLGQGQQIHAEVVKA----GAS-LDVGV 109 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~ 109 (430)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34444555666677777777776666542 222 244556666666667777776666655432 111 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGK--------------------GEEAINL 160 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~~~ 160 (430)
+..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|++.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66666777777777777776665431 11 3366666777777777 7777777
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHH
Q 043370 161 FEQMEQK----EFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 161 ~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665432 1111 1345666777777888888888888776643111111 23677778888888888888888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------CChhHHHHHHHHHhccchhHHHHH
Q 043370 232 IRNM----PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------DAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 232 ~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
+++. +..++ ..++..+...+...|++++|...+++..+..|. ...++..+..+|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7765 11111 456677777788889999999988888755432 244777888899999999999999
Q ss_pred HHHHHhC
Q 043370 298 REAMRER 304 (430)
Q Consensus 298 ~~~m~~~ 304 (430)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-14 Score=133.61 Aligned_cols=291 Identities=12% Similarity=0.008 Sum_probs=222.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCC--CC-C----HHHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP--IR-N----VIAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRP- 70 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 70 (430)
++....+..+...+.+.|++++|...|++.. .| + ...|..+...|...|++++|+..|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3445567788889999999999999998764 22 3 357888999999999999999999987543 2122
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCC--------------------HHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGAS-LD----VGVISSLISMYSRCGC--------------------LDD 125 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~ 125 (430)
...++..+...+...|++++|...+.+..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456778888999999999999999988663211 11 4578889999999999 999
Q ss_pred HHHHHhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhhcCcHHH
Q 043370 126 SVKTFLECEY-----S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN----DVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 126 A~~~~~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~ 191 (430)
|...|++... . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9998876431 1 245788899999999999999999999865310 122 2377888889999999999
Q ss_pred HHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhH
Q 043370 192 GMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAALIRNM----PVKAN----AIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 192 a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~ 259 (430)
|...+++..+...-.++ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988653111111 567888999999999999999998876 11112 5577788888999999999
Q ss_pred HHHHHHHHhcCC------CCCChhHHHHHHHHHhccchhH
Q 043370 260 AGRIAEEILGVN------PQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 260 a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
|...+++..++. +....++..+...|...|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999987553 2235577788888888887643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-13 Score=124.12 Aligned_cols=241 Identities=9% Similarity=0.001 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGL-AEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
..+|+.+...|.+.|++++|+..|++.. ..+...|+.+...+...|+ +++|+..|++.++.. +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3578889999999999999999999865 3478899999999999997 999999999999874 4477889999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHh-cCChHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGF-HGKGEEA 157 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~-~g~~~~A 157 (430)
+...|++++|...++++++.... +..+|..+..++.+.|++++|+..|+++. ..+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999998644 88999999999999999999999999865 4578999999999999 6666888
Q ss_pred -----HHHHHHHHHCCCCCCHHHHHHHHHHhhhcC--cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC-------
Q 043370 158 -----INLFEQMEQKEFEANDVTFVSLLYACSHCG--LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG------- 223 (430)
Q Consensus 158 -----~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g------- 223 (430)
+..|++.++.. +-+...|..+...+...| +.++|.+.+..+ + ..+.+...+..+.++|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 58899888853 335678888888888888 689999999887 3 33446788899999998874
Q ss_pred --CHHHHHHHHHhC--CCCCC-HHHHHHHHHHHH
Q 043370 224 --YLDEAAALIRNM--PVKAN-AIIWKTLLSACK 252 (430)
Q Consensus 224 --~~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~ 252 (430)
.+++|.++++++ ...|. ...|..+...+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 368999999998 56674 566776666544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=120.82 Aligned_cols=197 Identities=8% Similarity=0.036 Sum_probs=154.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
....+..+...+...|++++|...|+++. +.+...|..+...|...|++++|++.|++..+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45567777888888888888888888764 3467888889999999999999999999998763 4467888889999
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 260 (430)
+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|...++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999865 2346788899999999999999999999987 3333 678888899999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
...++++.+..|.++.++..+..+|...|++++|...+++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999899999999999999999999999999987643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-11 Score=121.95 Aligned_cols=194 Identities=7% Similarity=0.023 Sum_probs=153.9
Q ss_pred cHhHHHHHHHHHHh-------cCCHH-------HHHHHHhccCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 106 DVGVISSLISMYSR-------CGCLD-------DSVKTFLECEY----SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 106 ~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+..+|..++..+.+ .|+++ +|..+|++... .+...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 44555555666654 68876 89999987542 36889999999999999999999999999985
Q ss_pred CCCCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CH
Q 043370 168 EFEAND--VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDL-LGRCGYLDEAAALIRNM-PVKA-NA 241 (430)
Q Consensus 168 g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~ 241 (430)
.|+. ..|...+..+.+.|++++|.++|++..+. .| +...|...... +...|+.++|..+|++. ...| +.
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence 5653 47888888888999999999999999864 33 33334333322 34689999999999977 3334 57
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh----hHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA----PYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..|..++..+...|+.+.|..+|++.+...|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988765554 7778888888999999999999988653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-12 Score=122.46 Aligned_cols=295 Identities=10% Similarity=-0.033 Sum_probs=212.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC------------CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP------------IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV-----G- 67 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 67 (430)
...||.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4578999999999999999999887642 224678999999999999999999999887642 1
Q ss_pred CCC-CHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH---HhcCCHHHHHHHHhcc---CCCCH
Q 043370 68 FRP-DKITFVSVISSCSE--LATLGQGQQIHAEVVKAGASLDVGVISSLISMY---SRCGCLDDSVKTFLEC---EYSDV 138 (430)
Q Consensus 68 ~~p-~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~---~~~d~ 138 (430)
..+ ...++.....++.. .+++++|...|++.++..+. +...+..+..++ ...++.++|++.|++. .+.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 112 34556655555544 45789999999999987543 666666666554 3456777788877754 34566
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHH
Q 043370 139 VLWSSMIAAYGF----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTC 214 (430)
Q Consensus 139 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 214 (430)
..+..+...+.. .|+.++|.+++++..... +.+..++..+...+...|++++|...+.+..+. .+.+...+..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence 777766655554 467889999999988763 456778888999999999999999999999864 2235566776
Q ss_pred HHHHHhhc-------------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 215 VVDLLGRC-------------------GYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 215 li~~~~~~-------------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
+...|... +.+++|...+++. ...| +..+|..+...+...|++++|...|+++++.+|+
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 76665432 2356677777665 2333 4567788888899999999999999999988874
Q ss_pred CCh---hHHHHHHH-HHhccchhHHHHHHHHHHhC
Q 043370 274 DAA---PYVLLSNI-HASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 274 ~~~---~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 304 (430)
+.. .+..+... +...|++++|...+++..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 332 23334333 45789999999999887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-11 Score=128.80 Aligned_cols=263 Identities=9% Similarity=0.075 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL 85 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 85 (430)
+.+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.++.+|++.
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 345555556666666666666665443 345555556666666666666666655544432 2222222355555555
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
+++++...+. + .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++.
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 5555322221 1 223444445666666666666666666653 35666666666666666666666654
Q ss_pred HCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 043370 166 QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAII 243 (430)
Q Consensus 166 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 243 (430)
.+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++.. +.+| ....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 24456666666666666666666554432 235566778888999999999999999776 5544 3455
Q ss_pred HHHHHHHHHhc--CChhHHHHHHHHHhcCCC-----CCChhHHHHHHHHHhccchhHHHH
Q 043370 244 WKTLLSACKTH--KSTDMAGRIAEEILGVNP-----QDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 244 ~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
|.-|...+.+. ++..++.++|..-..+.| .+...|.-++..|.+.|+++.|..
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 65565555554 455566666665555544 467789999999999999998884
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.3e-12 Score=113.68 Aligned_cols=218 Identities=10% Similarity=0.068 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 54 EDVLDQYNLMRMVGFRPDKITFVSVISSCS-------ELATL-------GQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
++|+.+|++.++.. +-+...|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888877652 445666776666654 34775 7888888888873123366788888888888
Q ss_pred cCCHHHHHHHHhccCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-hcCcHHHHHH
Q 043370 120 CGCLDDSVKTFLECEY--S-DVV-LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS-HCGLKEKGME 194 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~--~-d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 194 (430)
.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887542 2 343 78888888888899999999999888763 334445544333322 3689999999
Q ss_pred HHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 195 FFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P---VKA--NAIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999887642 235678888888888999999999998887 2 344 46688888888888999999999999998
Q ss_pred cCCCCCC
Q 043370 269 GVNPQDA 275 (430)
Q Consensus 269 ~~~p~~~ 275 (430)
+..|.+.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=128.74 Aligned_cols=265 Identities=10% Similarity=-0.018 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCC--CC-CH----HHHHHHHHHHHHCCChhHHHHHHHHHHHC----CC-CCCHHHH
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMP--IR-NV----IAWITLIAGKAQNGLAEDVLDQYNLMRMV----GF-RPDKITF 75 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~ 75 (430)
.+..+...+...|++++|...|++.. .| +. ..|..+...|...|++++|+..|++..+. +- +....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 44567778899999999999998764 22 33 57889999999999999999999988653 11 2234667
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----C-CCCcHhHHHHHHHHHHhcCC-----------------HHHHHHHHhcc
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKA----G-ASLDVGVISSLISMYSRCGC-----------------LDDSVKTFLEC 133 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~ 133 (430)
..+...+...|++++|...++++.+. + .+....++..+...|...|+ +++|...|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88888999999999999999987664 1 12235678889999999999 99999988775
Q ss_pred CC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 134 EY---------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN----DVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 134 ~~---------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
.. ....+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 32 1345788899999999999999999999866311 012 237788889999999999999999988
Q ss_pred hhhcCCcc----CHhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 200 VKKYRRKP----RLEHYTCVVDLLGRCGYLDEAAALIRNM-------PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 200 ~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
.+...-.. ....+..+...|...|++++|...+++. +..+ ...++..+...+...|+.++|...+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 75321111 2467888999999999999999999876 1111 2446778888899999999999999999
Q ss_pred hcCCC
Q 043370 268 LGVNP 272 (430)
Q Consensus 268 ~~~~p 272 (430)
.++.+
T Consensus 370 l~~~~ 374 (411)
T 4a1s_A 370 LQLAX 374 (411)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 87765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=122.69 Aligned_cols=266 Identities=12% Similarity=0.013 Sum_probs=204.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC---CCC----HHHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP---IRN----VIAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRP-DKIT 74 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t 74 (430)
..+......+.+.|++++|...|++.. ..+ ...|..+...|...|++++|++.+++..+. +-.| ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 445566788899999999999999864 223 467889999999999999999999987643 2122 2456
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCC--------------------HHHHHHH
Q 043370 75 FVSVISSCSELATLGQGQQIHAEVVKAGAS-LD----VGVISSLISMYSRCGC--------------------LDDSVKT 129 (430)
Q Consensus 75 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 129 (430)
+..+...+...|++++|...+.+..+.... ++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 778888999999999999999987653211 12 3478889999999999 9999998
Q ss_pred HhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhhcCcHHHHHHH
Q 043370 130 FLECEY-----S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN----DVTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 130 ~~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
+++... . ....+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876531 1 245788888999999999999999998865310 111 23777888899999999999999
Q ss_pred HHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 043370 196 FDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAALIRNM-------PVKA-NAIIWKTLLSACKTHKSTDMAGRI 263 (430)
Q Consensus 196 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 263 (430)
+++..+...-.++ ...+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9988653111111 567888999999999999999999876 1111 244677888889999999999999
Q ss_pred HHHHhcCCC
Q 043370 264 AEEILGVNP 272 (430)
Q Consensus 264 ~~~~~~~~p 272 (430)
+++..++.+
T Consensus 326 ~~~a~~~~~ 334 (338)
T 3ro2_A 326 AEKHLEISR 334 (338)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 999987765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-13 Score=130.40 Aligned_cols=208 Identities=12% Similarity=0.009 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL-DDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 163 (430)
++++.+.++...+.. +.+...+..+...|...|++ ++|++.|++.. +.+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666555442 34778888888899999999 99999888754 44678899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhhc---------CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc--------CCHH
Q 043370 164 MEQKEFEANDVTFVSLLYACSHC---------GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC--------GYLD 226 (430)
Q Consensus 164 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 226 (430)
..+. .|+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9885 57778888888899998 9999999999998864 233578888899999888 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 227 EAAALIRNM-PVKA----NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 227 ~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+|.+.|++. ...| +...|..+...|...|++++|...++++.+++|.++.++..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999987 4455 6888999999999999999999999999999999999999999999999999999876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-11 Score=126.18 Aligned_cols=238 Identities=12% Similarity=0.064 Sum_probs=183.7
Q ss_pred CChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 20 GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 20 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....
T Consensus 1090 ~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444443332 4567888888888999999998888553 367778888888999999999999988777
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 100 KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 100 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
+.. ++..+.+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rL 1227 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 1227 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHH
Confidence 754 34444446888888888888644443 3556677777888888899999999999874 378888
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043370 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 180 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~ 259 (430)
...+.+.|++++|.+.+++.. +..+|..+..++...|++..|......+ ..++..+..++..|...|.+++
T Consensus 1228 A~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHH
Confidence 888999999999988888762 4578888888888888888888877653 3355566688889999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 260 AGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
|+.+++..++++|.+...|.-|..+|++.
T Consensus 1299 AI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 99999999999988888888888877754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-12 Score=106.55 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
..|..+...|.+.|++++|++.|++..+.. +-+..++..+...+.+.|++++|...+...... .+.+...+..+...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHH
Confidence 344444444444444444444444444431 122334444444444445555554444444332 11223344444444
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHH
Q 043370 219 LGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
+...++++.|...+++. ...| +...|..+...+...|++++|+..+++.++.+|.++.+|..++.+|...|++++|.+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555544443 1122 344455555555555555555555555555555555555555666666666666665
Q ss_pred HHHHHHh
Q 043370 297 FREAMRE 303 (430)
Q Consensus 297 ~~~~m~~ 303 (430)
.+++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=122.02 Aligned_cols=285 Identities=10% Similarity=-0.008 Sum_probs=203.3
Q ss_pred HHHcCChHHHHHHHccCC--------CCCHHHHHHHHHH--HHHCCChhHHH-----------HHHHHHHHCCCCCCHHH
Q 043370 16 YMKSGSLVEGEKVIRLMP--------IRNVIAWITLIAG--KAQNGLAEDVL-----------DQYNLMRMVGFRPDKIT 74 (430)
Q Consensus 16 ~~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~t 74 (430)
+.+.+++++|..+++.+. .+++..|-.++.. ....++++.+. +.++.+.... ++...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 457899999999887753 2344444444432 22233344444 6666665421 12222
Q ss_pred HH------HHHHHHhccCChHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----C--
Q 043370 75 FV------SVISSCSELATLGQGQQIHAEVVKA----GASL-DVGVISSLISMYSRCGCLDDSVKTFLECEY-----S-- 136 (430)
Q Consensus 75 ~~------~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-- 136 (430)
+. .....+...|++++|...+++..+. +-++ ...++..+...|...|++++|...+++... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 22 2556677889999999999999764 2111 346788999999999999999998877531 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc---CC
Q 043370 137 ---DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY---RR 205 (430)
Q Consensus 137 ---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~ 205 (430)
...+++.+...|...|++++|++.|++..+... .++ ..++..+...|...|++++|...+++..+.. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 245788899999999999999999998865310 111 2478889999999999999999999987621 22
Q ss_pred -ccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhcCCCCC
Q 043370 206 -KPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV-----KAN-AIIWKTLLSACKTHKS---TDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 206 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~ 274 (430)
+....++..+...|.+.|++++|...+++. .. .|. ...+..+...+...|+ .+.|..++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 234577889999999999999999999876 11 222 2335566666888888 77777777775 223445
Q ss_pred ChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...+..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-12 Score=113.41 Aligned_cols=227 Identities=8% Similarity=0.009 Sum_probs=179.2
Q ss_pred hhHHHHHHHHHHHc----CCh----HHHHHHHccCC---CCCHHHHHHHHHHHH-------HCCCh-------hHHHHHH
Q 043370 6 LVAGSSLAHMYMKS----GSL----VEGEKVIRLMP---IRNVIAWITLIAGKA-------QNGLA-------EDVLDQY 60 (430)
Q Consensus 6 ~~~~~~li~~~~~~----g~~----~~A~~~f~~m~---~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~ 60 (430)
...|...++.-.+. ++. +.|..+|++.. ..+...|..++..+. +.|++ ++|..+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 45677777775554 233 67888898775 347889998888776 45886 9999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHhccCC---
Q 043370 61 NLMRMVGFRP-DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVG-VISSLISMYSRCGCLDDSVKTFLECEY--- 135 (430)
Q Consensus 61 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--- 135 (430)
++..+. +.| +...|..++..+.+.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++..+
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 999973 244 5568999999999999999999999999985322 344 899999999999999999999998653
Q ss_pred CCHhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHH
Q 043370 136 SDVVLWSSMIAAY-GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHY 212 (430)
Q Consensus 136 ~d~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 212 (430)
.+...|....... ...|+.++|..+|++..+.. +-+...+..++..+.+.|+.++|..+|++......++| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3444554433332 23699999999999998762 34677888889999999999999999999987522455 46788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC
Q 043370 213 TCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m 235 (430)
..++..+.+.|+.++|..+++++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999887
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=122.99 Aligned_cols=166 Identities=9% Similarity=0.032 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------C
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMV-------GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA------G 102 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g 102 (430)
+..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999998763 22334566777888888889999999988888764 2
Q ss_pred C-CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 043370 103 A-SLDVGVISSLISMYSRCGCLDDSVKTFLECEY-----------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK--- 167 (430)
Q Consensus 103 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 167 (430)
. +....++..+...|...|++++|...|++... .....|..+...|...|++++|++.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22356677778888888888888887776431 12345666777777777777777777776553
Q ss_pred ---CCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 168 ---EFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 168 ---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
+..|+ ..++..+...+...|++++|..+++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 34566666677777777777777777664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-13 Score=120.96 Aligned_cols=246 Identities=9% Similarity=-0.007 Sum_probs=152.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCC--------C---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHC------C
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPI--------R---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMV------G 67 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 67 (430)
+..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788888889999999999988887643 1 3467788888899999999999999888764 2
Q ss_pred C-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC----
Q 043370 68 F-RPDKITFVSVISSCSELATLGQGQQIHAEVVKA------GA-SLDVGVISSLISMYSRCGCLDDSVKTFLECEY---- 135 (430)
Q Consensus 68 ~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 135 (430)
- +....++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|...|++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223566778888888999999999999888764 22 22456678888889999999999888876532
Q ss_pred -------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC
Q 043370 136 -------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR 208 (430)
Q Consensus 136 -------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 208 (430)
....++..+...|...|++++|...|+++.+.. |+. .+..+-. .... ....
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~---~~~~----------------~~~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVDD---ENKP----------------IWMH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CC----------------HHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCCc---chHH----------------HHHH
Confidence 134567888888999999999999998887631 110 0000000 0000 0000
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNMP-VKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
...+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++.+++.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1112222223333444444555554442 223 345566666667777777777777776665544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-11 Score=101.85 Aligned_cols=161 Identities=11% Similarity=0.106 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
+..|..+...|.+.|++++|++.|++.++.. +-+..++..+..++...|++++|...+......... +..++..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3344444444444455555555544444432 223344444444444444554444444444443222 33444444444
Q ss_pred HHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
+...++++.|...+.+.. +.+...|..+...|.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 444444444444444322 2234444444445555555555555555444432 223344444444555555555555
Q ss_pred HHHHHHh
Q 043370 194 EFFDLMV 200 (430)
Q Consensus 194 ~~~~~~~ 200 (430)
+.|++..
T Consensus 162 ~~~~~al 168 (184)
T 3vtx_A 162 KYFKKAL 168 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-12 Score=120.04 Aligned_cols=189 Identities=10% Similarity=0.043 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHhcC----CHHHHHHHHhccCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 108 GVISSLISMYSRCG----CLDDSVKTFLECEYSDVVLWSSMIAAYGFHG---KGEEAINLFEQMEQKEFEANDVTFVSLL 180 (430)
Q Consensus 108 ~~~~~li~~~~~~g----~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll 180 (430)
.....|..+|...+ +.+.+..++......++.++..|...|...| +.++|++.|++..+.| .++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 34445555666555 4555666666666667778888999999999 8999999999998887 55666556666
Q ss_pred HHhhhc----CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH-H--hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043370 181 YACSHC----GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL-L--GRCGYLDEAAALIRNMPVKANAIIWKTLLSACKT 253 (430)
Q Consensus 181 ~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 253 (430)
..|... ++.++|..+|+... +-+...+..|..+ | ...|++++|.+.|++.-...+...+..|...|.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY- 294 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 666655 78999999999886 2355666777776 4 568999999999998732236777777777776
Q ss_pred cC-----ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh----ccchhHHHHHHHHHHhCCC
Q 043370 254 HK-----STDMAGRIAEEILGVNPQDAAPYVLLSNIHAS----AKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 254 ~~-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 306 (430)
.| +.++|...|++.. |.++.++..|..+|.. ..++++|...+++..+.|.
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 55 8999999999987 7788899999988887 4488999999998887764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=114.96 Aligned_cols=301 Identities=10% Similarity=0.009 Sum_probs=208.3
Q ss_pred CCCchhHHHHHHHHH--HHcCChHHHHHHHccCC--------CCCHHHHHHHHHH--HHHCCChhHHH---------HHH
Q 043370 2 FELDLVAGSSLAHMY--MKSGSLVEGEKVIRLMP--------IRNVIAWITLIAG--KAQNGLAEDVL---------DQY 60 (430)
Q Consensus 2 ~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~--~~~~g~~~~A~---------~~~ 60 (430)
..|...+-+.|-+.| .+.+++++|.++++.+. .+++..|-.|+.. ....+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 346677888888888 88999999998887643 2244444544442 11112222222 555
Q ss_pred HHHHHCCCCCCH-H---HHHHHHHHHhccCChHHHHHHHHHHHHcC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 043370 61 NLMRMVGFRPDK-I---TFVSVISSCSELATLGQGQQIHAEVVKAG--AS---LDVGVISSLISMYSRCGCLDDSVKTFL 131 (430)
Q Consensus 61 ~~m~~~g~~p~~-~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 131 (430)
+.+.....+.+. . .+......+...|++++|...++++.+.. .+ ....++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555432111111 1 22334455678899999999999987642 11 134678889999999999999998887
Q ss_pred ccCC-----C-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 132 ECEY-----S-----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK----EFEA-NDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 132 ~~~~-----~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
+... + ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6431 1 2457888999999999999999999987653 1111 2356778889999999999999999
Q ss_pred HHHhhhc---CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHH
Q 043370 197 DLMVKKY---RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PV--KAN-AIIWKTLLSACKTHKS---TDMAGRI 263 (430)
Q Consensus 197 ~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~~~---~~~a~~~ 263 (430)
++..+.. +.+....++..+...|.+.|++++|...+++. +. .|. ...+..+...+...++ .+.|...
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9987611 22223677888999999999999999999876 11 222 3345555555777777 7777777
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 264 AEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 264 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 326 ~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7762 22233456778899999999999999999987743
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-12 Score=121.07 Aligned_cols=208 Identities=9% Similarity=-0.036 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 043370 53 AEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL-GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFL 131 (430)
Q Consensus 53 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 131 (430)
++++++.+++..... +.+...+..+..++...|++ ++|.+.++++++.... +..++..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777766542 45778889999999999999 9999999999987533 68899999999999999999999999
Q ss_pred ccC--CCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc--------CcHHHH
Q 043370 132 ECE--YSDVVLWSSMIAAYGFH---------GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC--------GLKEKG 192 (430)
Q Consensus 132 ~~~--~~d~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a 192 (430)
+.. .|+...|..+...|... |++++|++.|++..+.. +-+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 864 46678899999999999 99999999999998863 44577888898999888 999999
Q ss_pred HHHHHHHhhhcCCcc----CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 193 MEFFDLMVKKYRRKP----RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
...|++..+. .| +...|..+..+|.+.|++++|.+.|++. ...| +...|..+...+...|+.++|...+.+
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999864 34 7788999999999999999999999987 4445 566788888888888888888775543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-10 Score=104.95 Aligned_cols=263 Identities=10% Similarity=-0.066 Sum_probs=172.9
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HhHHH
Q 043370 41 ITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI----TFVSVISSCSELATLGQGQQIHAEVVKAGAS-LD----VGVIS 111 (430)
Q Consensus 41 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~ 111 (430)
..+...+...|++++|...+++........+.. ++..+...+...|++++|...+++..+.... ++ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455667888888888888877653222222 3455566677788888888888777653111 11 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHH
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEY----------S-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE--A--NDVTF 176 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~----------~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~ 176 (430)
.+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677788888888888888776431 1 2345566777888888888888888887654211 1 23456
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT-----CVVDLLGRCGYLDEAAALIRNM-PVKAN-----AIIWK 245 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~ 245 (430)
..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6777778888999999888888764311111111111 2334577889999999988887 22221 23456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCC-----C-ChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 246 TLLSACKTHKSTDMAGRIAEEILGVNPQ-----D-AAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 246 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.+...+...|++++|...+++.....+. + ...+..+..++...|++++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6777788889999999999888644321 1 23667778888899999999988887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=123.88 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=99.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHH
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVV 216 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 216 (430)
+.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|.+.|++..+. .| +...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4455566666666666666666666655531 223455556666666666666666666665542 23 345566666
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHH
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 294 (430)
.+|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666655 3334 4556666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 043370 295 SEFREAMR 302 (430)
Q Consensus 295 ~~~~~~m~ 302 (430)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-11 Score=99.61 Aligned_cols=163 Identities=10% Similarity=0.000 Sum_probs=86.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 183 (430)
...+..+...|...|++++|...|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455666667777777777777766542 345666666666666677777777666666542 33445555555566
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 261 (430)
...|++++|..+++++.+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665543 1223344444444444444444444444443 1111 2334444444444444444444
Q ss_pred HHHHHHhcCCC
Q 043370 262 RIAEEILGVNP 272 (430)
Q Consensus 262 ~~~~~~~~~~p 272 (430)
..++++.+..|
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 44444444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-10 Score=94.58 Aligned_cols=157 Identities=12% Similarity=0.080 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
..+..+...|...|++++|...|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566666666777777777766542 245566666666666666666666666666542 334555555666666
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
..|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++.. +.+...|..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666665543 2244445555555555555555555554432 22334444444444444555555544
Q ss_pred HHHHH
Q 043370 161 FEQME 165 (430)
Q Consensus 161 ~~~m~ 165 (430)
+++..
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=109.18 Aligned_cols=228 Identities=9% Similarity=-0.027 Sum_probs=179.4
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CC----CcHhHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVG-FRPD----KITFVSVISSCSELATLGQGQQIHAEVVKAG--AS----LDVGVIS 111 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~----~~~~~~~ 111 (430)
....+...|++++|+..|++..+.- -.|| ..++..+...+...|+++.|...+.+..+.- .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5566889999999999999997631 0122 3578888999999999999999999887631 11 1245788
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQK----EF-EANDVTFV 177 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 177 (430)
.+...|...|++++|...|++... ++ ..+++.+...|...|++++|++.|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999987542 12 257888999999999999999999998762 33 33456788
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcC---CccCHhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYR---RKPRLEHYTCVVDLLGRCGY---LDEAAALIRNMPVKAN-AIIWKTLLSA 250 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 250 (430)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999998775321 12223346778888999999 9999999999965554 4466778888
Q ss_pred HHhcCChhHHHHHHHHHhcC
Q 043370 251 CKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~ 270 (430)
|...|++++|...+++..++
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-10 Score=101.28 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHH
Q 043370 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMI 145 (430)
Q Consensus 69 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li 145 (430)
+.|+..+......+...|++++|...|+..++...+++...+..+..+|.+.|++++|...|++.. +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346788888999999999999999999999998764678888889999999999999999999764 34678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC---HhHHHHH
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEAND-------VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR---LEHYTCV 215 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 215 (430)
..|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999998863 2334 4577778888899999999999999975 3554 5677788
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 216 VDLLGRCGYL--DEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 216 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
..+|...|+. ++|..+ . ..+...|.... ....+.+++|...+++..+++|.++.+...+...
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766653 332222 1 12344444433 3445668999999999999999887776666544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-09 Score=102.42 Aligned_cols=263 Identities=10% Similarity=0.013 Sum_probs=188.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHccC----CCCCH----HHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCH----HHH
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLM----PIRNV----IAWITLIAGKAQNGLAEDVLDQYNLMRMVGF-RPDK----ITF 75 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~ 75 (430)
...+...+...|++++|...+++. +..+. ..++.+...+...|++++|...+++..+... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344556777899999999998763 22333 2567777889999999999999998865310 1122 335
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCC--C-cHhHHHHHHHHHHhcCCHHHHHHHHhccC----C---C-CHhH
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKA----GAS--L-DVGVISSLISMYSRCGCLDDSVKTFLECE----Y---S-DVVL 140 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~---~-d~~~ 140 (430)
..+...+...|++++|...+++..+. +.. | ...++..+...|...|++++|...+++.. . + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888999999999999988653 222 2 34566778899999999999999998743 1 1 2356
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHH
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DVTFV-----SLLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHY 212 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 212 (430)
|..+...+...|++++|...+++.....-.++ ...+. ..+..+...|+.++|...++.........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 78888899999999999999999865321211 11121 233447789999999999998865311111 12356
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 213 TCVVDLLGRCGYLDEAAALIRNM-------PVKANA-IIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
..+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77888999999999999998876 211222 255566677899999999999999987554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-10 Score=98.43 Aligned_cols=190 Identities=9% Similarity=-0.008 Sum_probs=132.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 105 LDVGVISSLISMYSRCGCLDDSVKTFLECE---Y-SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 180 (430)
.|+..+..+...|.+.|++++|...|++.. + ++...|..+..++...|++++|++.|++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 356777778888888888888888887643 3 667777778888888888888888888887753 22456677777
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccCH-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRL-------EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN---AIIWKTLLS 249 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~ 249 (430)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 88888888888888888887542 1233 45677777777888888888888776 55565 345555555
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 5543 344556666666665544444333 34556679999999887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-10 Score=115.07 Aligned_cols=159 Identities=11% Similarity=-0.012 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|.+.|++.++.... +..+++.+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444444444444444444444444431 122344444444444444555554444444443322 344444444455
Q ss_pred HhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHH
Q 043370 118 SRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGME 194 (430)
Q Consensus 118 ~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 194 (430)
.+.|++++|++.|++.. ..+...|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence 55555555544444322 2234445555555555555555555555544431 1123444444445555555544444
Q ss_pred HHHHH
Q 043370 195 FFDLM 199 (430)
Q Consensus 195 ~~~~~ 199 (430)
.++++
T Consensus 167 ~~~ka 171 (723)
T 4gyw_A 167 RMKKL 171 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-11 Score=105.48 Aligned_cols=153 Identities=7% Similarity=-0.006 Sum_probs=85.1
Q ss_pred HCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCcHhHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMV-------GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA------GA-SLDVGVISSLI 114 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 114 (430)
..|++++|+.+|++.++. ..+....++..+...+...|++++|...++++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445566666666555431 11223455666777777777777777777776653 11 12345566666
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 043370 115 SMYSRCGCLDDSVKTFLECEY-----------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK------EFEA-NDVTF 176 (430)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~ 176 (430)
..|...|++++|...|++... ....+|..+...|...|++++|+..|++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 666777777766666655321 12345555666666666666666666665543 1122 13345
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
..+...+...|++++|..++++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555566666666666655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-09 Score=104.10 Aligned_cols=281 Identities=12% Similarity=0.003 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHcCCh---HHHHHHHccCCCCCHHHHHHHHHHHHHCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSL---VEGEKVIRLMPIRNVIAWITLIAGKAQNG-----LAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
..+..|..+|...|+. ++|...|++..+.+...+..|...+...+ ++++|+..|++..+.|. |+ .+..+
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~L 112 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPL 112 (452)
T ss_dssp TGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHH
Confidence 3444566667777777 88888888877667777777777555555 67888888888877652 22 23333
Q ss_pred HHHHhc-----------------------------------cCC----hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 79 ISSCSE-----------------------------------LAT----LGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 79 l~~~~~-----------------------------------~g~----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
...+.. .+. .+.+..++... ...++..+..|..+|.+
T Consensus 113 g~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a----~~~~~~a~~~Lg~~~~~ 188 (452)
T 3e4b_A 113 AMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA----LNTTDICYVELATVYQK 188 (452)
T ss_dssp HHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH----TTTCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH----HcCCHHHHHHHHHHHHH
Confidence 333322 221 22222222222 23344588899999999
Q ss_pred cC---CHHHHHHHHhccC---CCCHhHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-h--hhc
Q 043370 120 CG---CLDDSVKTFLECE---YSDVVLWSSMIAAYGFH----GKGEEAINLFEQMEQKEFEANDVTFVSLLYA-C--SHC 186 (430)
Q Consensus 120 ~g---~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~ 186 (430)
.| +.++|.+.|+... .++...+..+...|... +++++|++.|++.. .| +...+..+... + ...
T Consensus 189 ~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 189 KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGG
T ss_pred cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCC
Confidence 99 9999999998754 34556667788777655 79999999999987 43 44455555555 3 568
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG-----YLDEAAALIRNMPVKANAIIWKTLLSACKT----HKST 257 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~ 257 (430)
++.++|..+|++..+. | +...+..|..+|. .| ++++|...|++.- ..+...+..|...|.. ..+.
T Consensus 265 ~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCH
T ss_pred CCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCH
Confidence 9999999999998765 4 5677778888887 55 9999999999988 5577788777777766 3499
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHh----ccchhHHHHHHHHHHhCCC
Q 043370 258 DMAGRIAEEILGVNPQDAAPYVLLSNIHAS----AKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 306 (430)
++|...+++..+.+ ++.+...|..+|.. ..+.++|...++.-.+.|.
T Consensus 339 ~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 339 QKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999988754 57788889999875 5689999999999887774
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-10 Score=102.05 Aligned_cols=191 Identities=8% Similarity=-0.001 Sum_probs=97.1
Q ss_pred HhccCChHHHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKA----GASLD-VGVISSLISMYSRCGCLDDSVKTFLECEY-----SD----VVLWSSMIAA 147 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~ 147 (430)
+...|++++|...|.+..+. |-+++ ..+++.+..+|.+.|++++|...|++... .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445555555555444332 11111 23455555555555555555555544321 01 2355666666
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH-----hHHHHHH
Q 043370 148 YGFH-GKGEEAINLFEQMEQKEFE-AN----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL-----EHYTCVV 216 (430)
Q Consensus 148 ~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li 216 (430)
|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|++..+...-.+.. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 7777777777666542100 01 2345666666777777777777777666431111111 1455566
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHhcCCC
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKANAI------IWKTLLSACK--THKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p 272 (430)
.++...|++++|...|++. .+.|+.. .+..++.++. ..++++.|...++++..++|
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 6666777777777777665 3333311 2333444443 34456666666666666665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-09 Score=101.01 Aligned_cols=228 Identities=9% Similarity=0.064 Sum_probs=177.4
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CC-cHhHH
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVG-FRPD----KITFVSVISSCSELATLGQGQQIHAEVVKAGA-----SL-DVGVI 110 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~~-~~~~~ 110 (430)
.....+...|++++|+..|++..+.. -.+| ..++..+...+...|+++.|...+.+..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34555788999999999999987642 1133 45677888899999999999999998876311 11 24578
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECEY-----S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-----KEFEANDVTF 176 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 176 (430)
+.+...|...|++++|...|++... + ...+++.+...|...|++++|++.|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 8899999999999999999987542 1 235788899999999999999999999876 32 3336778
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCC---ccCHhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRR---KPRLEHYTCVVDLLGRCGY---LDEAAALIRNMPVKAN-AIIWKTLLS 249 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~ 249 (430)
..+...+.+.|+.++|...+++..+...- +.....+..+...|...|+ +.+|...+++.+..|+ ...+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88899999999999999999998764222 2223456777778888888 9999999999765554 345667777
Q ss_pred HHHhcCChhHHHHHHHHHhcC
Q 043370 250 ACKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~ 270 (430)
.|...|+.+.|...+++..+.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999988643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-10 Score=98.97 Aligned_cols=149 Identities=7% Similarity=-0.022 Sum_probs=106.2
Q ss_pred HcCChHHHHHHHccCC-------CC----CHHHHHHHHHHHHHCCChhHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 043370 18 KSGSLVEGEKVIRLMP-------IR----NVIAWITLIAGKAQNGLAEDVLDQYNLMRMV------GFRP-DKITFVSVI 79 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll 79 (430)
..|+++.|...|++.. .+ ...+|..+...|...|++++|+..|++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4556666655555432 11 3567788888888888888888888887753 2122 345677788
Q ss_pred HHHhccCChHHHHHHHHHHHHc------C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CCHhHH
Q 043370 80 SSCSELATLGQGQQIHAEVVKA------G-ASLDVGVISSLISMYSRCGCLDDSVKTFLECEY-----------SDVVLW 141 (430)
Q Consensus 80 ~~~~~~g~~~~a~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~d~~~~ 141 (430)
..+...|++++|...+.++++. . .+....++..+...|...|++++|...|++... ....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888887664 1 122456778888888888888888888876532 134567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
..+...|...|++++|+..|++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888888888888765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-09 Score=94.48 Aligned_cols=205 Identities=7% Similarity=-0.018 Sum_probs=152.5
Q ss_pred hHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 043370 22 LVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRPD-KITFVSVISSCSELATLGQGQQIHA 96 (430)
Q Consensus 22 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 96 (430)
+++|...|++ ....|...|++++|+..|.+..+. |-+++ ..+|+.+..++...|++++|...++
T Consensus 33 ~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666665544 466788999999999999988653 32222 4678899999999999999999999
Q ss_pred HHHHcCCCC-c----HhHHHHHHHHHHhc-CCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHH
Q 043370 97 EVVKAGASL-D----VGVISSLISMYSRC-GCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 97 ~~~~~g~~~-~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
+.++..... + ..+++.+...|... |++++|...|++... .+ ..+|+.+...|.+.|++++|+..|
T Consensus 102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 181 (292)
T 1qqe_A 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 887642110 1 45788999999996 999999999987542 11 356888999999999999999999
Q ss_pred HHHHHCCCCCCH------HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH------hHHHHHHHHHh--hcCCHHH
Q 043370 162 EQMEQKEFEAND------VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL------EHYTCVVDLLG--RCGYLDE 227 (430)
Q Consensus 162 ~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~--~~g~~~~ 227 (430)
++..+....... .++..+..++...|++++|...|++..+ +.|+. ..+..++..|. ..+++++
T Consensus 182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999886422221 1567788889999999999999999874 34432 13445566664 5678999
Q ss_pred HHHHHHhC-CCCCC
Q 043370 228 AAALIRNM-PVKAN 240 (430)
Q Consensus 228 A~~~~~~m-~~~p~ 240 (430)
|...|+++ ...|+
T Consensus 259 A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 259 HCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHTTSSCCCHH
T ss_pred HHHHhccCCccHHH
Confidence 99999887 54553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-09 Score=91.57 Aligned_cols=205 Identities=12% Similarity=0.016 Sum_probs=135.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEY--S-D---VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN-DVTFV 177 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 177 (430)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 556666777777777888888887777642 2 3 55677777777777888888888877776421 112 34455
Q ss_pred HHHHHhhh--------cCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 043370 178 SLLYACSH--------CGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248 (430)
Q Consensus 178 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 248 (430)
.+..++.. .|++++|...|+++.+.+ |+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 56666666 777777777777776542 32 12222211111100000 11245566
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHhc----------cchhHHHHHHHHHHhCCCCCCCceeEE
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLLSNIHASA----------KRWQGVSEFREAMRERNVKKEPGVSWL 315 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (430)
..+...|+++.|...++++++..|.+ +.++..+..+|... |++++|...+++..+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---------- 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----------
Confidence 77999999999999999999998864 34788888999876 89999999999987543
Q ss_pred EECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHc
Q 043370 316 EIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLR 351 (430)
Q Consensus 316 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~ 351 (430)
..+|...++...+..+..++.+.
T Consensus 226 -------------p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 -------------PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHHh
Confidence 23555666777777777666553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-09 Score=93.66 Aligned_cols=202 Identities=10% Similarity=-0.003 Sum_probs=144.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHhccCC--C----CHh
Q 043370 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD---VGVISSLISMYSRCGCLDDSVKTFLECEY--S----DVV 139 (430)
Q Consensus 69 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----d~~ 139 (430)
+.+...+......+.+.|++++|...|+.+++..+. + ..++..+..+|.+.|++++|...|+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345677788888889999999999999999987533 3 67888999999999999999999998652 2 245
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHh
Q 043370 140 LWSSMIAAYGF--------HGKGEEAINLFEQMEQKEFEAND-VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLE 210 (430)
Q Consensus 140 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 210 (430)
.+..+..++.. .|++++|+..|++..+. .|+. ..... ...+..+... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 67788888888 99999999999999886 3443 22211 1111111111 112
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhcCCCCCC
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTH----------KSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 275 (430)
.+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3556778888889999999888876 22232 44666677777755 888999999999999999765
Q ss_pred h---hHHHHHHHHHhccchh
Q 043370 276 A---PYVLLSNIHASAKRWQ 292 (430)
Q Consensus 276 ~---~~~~l~~~~~~~g~~~ 292 (430)
. +...+...+...++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 4 3344444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=7.9e-09 Score=92.20 Aligned_cols=239 Identities=9% Similarity=0.031 Sum_probs=162.1
Q ss_pred HHcCChHHHHHHHccCCCCC-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043370 17 MKSGSLVEGEKVIRLMPIRN-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 17 ~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
.=.|++..++.-...+...+ ...---+.++|...|++.... .-.|....+..+..-+ ..+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 34678888877666554322 233334568888888877421 1234443444443333 322 56777
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY-----SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 170 (430)
++.++.+ +++..+...+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 7776655 44555666888999999999999999987632 35677788889999999999999999999875 5
Q ss_pred C-----CHHHHHHHHHHh--hhcC--cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC---
Q 043370 171 A-----NDVTFVSLLYAC--SHCG--LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV--- 237 (430)
Q Consensus 171 p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 237 (430)
| +..+...+..++ ...| +..+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6 366666676663 3334 899999999998754 355333344444788999999999998765 21
Q ss_pred -------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 238 -------KA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 238 -------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
.| |+.+...+|......|+ .|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 45566566666666676 7889999999999976644
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-08 Score=90.28 Aligned_cols=239 Identities=7% Similarity=-0.043 Sum_probs=166.7
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 124 (430)
+-..-.|++..++.-..++.. ......-.-+.+++...|+++.+ ....|.......+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 334457888888874333221 11223344456777777776532 123344434444333 33333
Q ss_pred HHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 125 DSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 125 ~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777654 3556667788899999999999999999987765322 45667788899999999999999999997
Q ss_pred hhcCCcc-----CHhHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 043370 201 KKYRRKP-----RLEHYTCVVDL--LGRCG--YLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 201 ~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 270 (430)
+. .| +..+...|..+ ....| ++.+|..+|+++ ...|+..+-..++.++...|++++|...++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 55 34555566655 33334 999999999999 33465344445555899999999999999988765
Q ss_pred ----------CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 271 ----------NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 271 ----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+|.++.+...++......|+ +|.+++.++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888999888888888887 8899999987654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.1e-09 Score=81.03 Aligned_cols=126 Identities=13% Similarity=0.204 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+. .+..++..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 45666666777777777777777766543 33555666666666666777777777766666532 24555555666666
Q ss_pred hcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 119 RCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
+.|++++|.+.|+++. +.+...|..+...+.+.|++++|...|+++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666665543 23445555566666666666666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.7e-09 Score=81.23 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLL 219 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 219 (430)
.|..+...+...|++++|+.+|+++.+.+ +.+..++..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45555666666666666666666665542 234455555555666666666666666665542 122334444455555
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 220 GRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.+.|++++|.+.++++ ...| +...|..+...+...|+++.|...++++.+.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555444 1111 344444444455555555555555555544444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-08 Score=86.37 Aligned_cols=25 Identities=4% Similarity=0.138 Sum_probs=15.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHC
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMV 66 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~ 66 (430)
.....+.+.|++++|+..|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444556666666666666666654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.6e-09 Score=92.95 Aligned_cols=175 Identities=8% Similarity=-0.082 Sum_probs=134.2
Q ss_pred HHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 123 ~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
.+.....+....+.+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 4444555555555566777778888888999999999999988763 335667888888899999999999999988653
Q ss_pred cCCccCHhHHHH-HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC--Chh
Q 043370 203 YRRKPRLEHYTC-VVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD--AAP 277 (430)
Q Consensus 203 ~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 277 (430)
.|+...... ....+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 233356677777788877776 3344 57788888888999999999999999999999876 788
Q ss_pred HHHHHHHHHhccchhHHHHHHHHH
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+..|+.+|...|+.++|...+++-
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999999999988877654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-08 Score=85.38 Aligned_cols=181 Identities=9% Similarity=0.001 Sum_probs=119.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEY--SD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND----VT 175 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 175 (430)
+...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 345566677788888888888888887652 22 3567778888888888888888888887753 332 13
Q ss_pred HHHHHHHhhh------------------cCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043370 176 FVSLLYACSH------------------CGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNMP 236 (430)
Q Consensus 176 ~~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (430)
+..+..++.. .|+.++|...|+++.+. .|+ ...+.++.... .+....
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-------
Confidence 3344444433 35666666666666543 222 11211111100 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA---APYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 237 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
......+...+...|+++.|...++++++..|+++ .++..+..+|.+.|++++|.+.++.+...+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345568889999999999999999998665 5688999999999999999999999887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-08 Score=102.46 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=91.2
Q ss_pred HHCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 48 AQNGLAEDVLDQYNLMR--------MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++++++.... +...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45666666666666665 221 234455555666666666666666666666654322 45556666666666
Q ss_pred cCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 120 CGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
.|++++|.+.|++.. ..+...|..+..+|.+.|++++ ++.|++..+.+ +-+...+..+..++...|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666665533 2345555556666666666666 66666655542 223445555555555666666666655
Q ss_pred HHHhhhcCCccC-HhHHHHHHHHHhh
Q 043370 197 DLMVKKYRRKPR-LEHYTCVVDLLGR 221 (430)
Q Consensus 197 ~~~~~~~~~~p~-~~~~~~li~~~~~ 221 (430)
+++.+ +.|+ ...+..+..+|..
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHc
Confidence 55542 2333 3444444444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.8e-10 Score=89.81 Aligned_cols=140 Identities=9% Similarity=-0.007 Sum_probs=90.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH
Q 043370 147 AYGFHGKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 225 (430)
.+...|+.++|+..+++.... .|+ ...+..+...|.+.|++++|...|++..+. .+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334455666666666655442 222 234445566666666666666666666543 122456666677777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHhcCCCCCChhHHHHHHHHHhccc
Q 043370 226 DEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGR-IAEEILGVNPQDAAPYVLLSNIHASAKR 290 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 290 (430)
++|...|++. ...| +...|..+...+...|+.++|.+ .++++.+++|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3445 46677777778888888766555 4588888888888888888777777664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-08 Score=92.32 Aligned_cols=217 Identities=10% Similarity=-0.008 Sum_probs=143.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE-LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456777777777665531 111 111 35666666666553 345667777777777
Q ss_pred HHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhhhcCcHHHHH
Q 043370 129 TFLECEY-----SD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQK----EFEAN--DVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 129 ~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~ 193 (430)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+. | .|. ..++..+...|.. |++++|.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 7765431 11 356777888888889999999888876542 2 122 3567778888888 9999999
Q ss_pred HHHHHHhhhcCC---cc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHH
Q 043370 194 EFFDLMVKKYRR---KP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PV---KAN----AIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 194 ~~~~~~~~~~~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~a~ 261 (430)
..|++..+.+.- .+ ...++..+...|.+.|++++|...|++. .. .++ ...+..+...+...|+++.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887753211 11 1467888899999999999999998876 11 111 235666666777889999999
Q ss_pred HHHHHHhcCCCCCChh-----HHHHHHHHHhccchhHHHH
Q 043370 262 RIAEEILGVNPQDAAP-----YVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 296 (430)
..+++.+ +.|....+ ...++.++ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 88854332 33445555 4566655555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-08 Score=101.30 Aligned_cols=190 Identities=11% Similarity=0.005 Sum_probs=149.3
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhc
Q 043370 83 SELATLGQGQQIHAEVV--------KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~ 151 (430)
...|++++|.+.+++.+ +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999998 432 4467889999999999999999999999865 45788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
|++++|++.|++..+.. +-+...+..+..++...|++++ .+.|++..+. .+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998863 3356788899999999999999 9999998864 233668899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHhcCCCCCChh
Q 043370 232 IRNM-PVKAN-AIIWKTLLSACKTHKS-----TDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 232 ~~~m-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 277 (430)
|++. ...|+ ...|..+..++...++ .+...+..+.+..+.+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 56675 5667777777655554 344444555555555544443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-08 Score=88.05 Aligned_cols=161 Identities=9% Similarity=0.014 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHH-HHHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--SDVVLWSS-MIAA 147 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~-li~~ 147 (430)
+...+..+...+...|++++|...++++++..+. +...+..+...|.+.|++++|...|++... |+...... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3445555666666677777777777777665432 566666677777777777777777776643 33322222 2223
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
+.+.++.++|+..|++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 455566666666666666542 3345566666666667777777777776666541111124456666666666666666
Q ss_pred HHHHHH
Q 043370 228 AAALIR 233 (430)
Q Consensus 228 A~~~~~ 233 (430)
|...++
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-08 Score=83.26 Aligned_cols=187 Identities=9% Similarity=0.021 Sum_probs=114.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCCh
Q 043370 75 FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKG 154 (430)
Q Consensus 75 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~ 154 (430)
+......+...|++++|...|++.++..+. +...+... ..... .......++.+...|.+.|++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCCH
Confidence 334445556778888888888877775321 22222220 00000 000122234477778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCC--HHHHHHH
Q 043370 155 EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGY--LDEAAAL 231 (430)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~--~~~A~~~ 231 (430)
++|+..|++..+.. +-+...+..+...+...|++++|...|++..+. .| +...+..+...|...|. .+.+...
T Consensus 71 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 71 DKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888888887753 335667777888888888888888888888753 34 56677777777765543 3445566
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 232 IRNMPVKANA--IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 232 ~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
++... .|+. ..|..+..++...|++++|...|++.+++.| +......|.+
T Consensus 147 ~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P-~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDK 198 (208)
T ss_dssp HC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC-CHHHHHHHHH
T ss_pred HHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 66552 2333 3344444556677889999999999998888 4444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-06 Score=78.30 Aligned_cols=231 Identities=7% Similarity=0.004 Sum_probs=167.7
Q ss_pred HHHCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hh
Q 043370 47 KAQNGL-AEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA--TLGQGQQIHAEVVKAGASLDVGVISSLISMY----SR 119 (430)
Q Consensus 47 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~ 119 (430)
..+.|. .++|++++++++..+ +-+...|+.--.++...+ +++++.+.++.++...++ +..+|+--...+ .+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 334444 468999999998863 334455787777777888 899999999999887654 666666554444 45
Q ss_pred c---CCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc---
Q 043370 120 C---GCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGE--EAINLFEQMEQKEFEANDVTFVSLLYACSHCGL--- 188 (430)
Q Consensus 120 ~---g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--- 188 (430)
. +++++++++++.+. +++-.+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.-.....+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 5 78889998888765 457788888887888888888 9999999998875 3466677766666666665
Q ss_pred ---HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhH
Q 043370 189 ---KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE-AAALIRNM-PV----KANAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 189 ---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~~~~~~ 259 (430)
++++.+.++.++.. .+-+...|+.+-..+.+.|+..+ +..+.++. .. ..+...+..+...+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 78888888888754 23467778878778877777444 55566665 21 2367778888888888888888
Q ss_pred HHHHHHHHhc-CCCCCChhHHHHH
Q 043370 260 AGRIAEEILG-VNPQDAAPYVLLS 282 (430)
Q Consensus 260 a~~~~~~~~~-~~p~~~~~~~~l~ 282 (430)
|.++++.+.+ .+|.....|...+
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHH
Confidence 8888888885 7886666665443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-08 Score=98.41 Aligned_cols=159 Identities=11% Similarity=0.019 Sum_probs=102.5
Q ss_pred CCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 121 GCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 121 g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +.+..++..+...+...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666544 2345667777777777777777777777776652 3345667777777777777777777777
Q ss_pred HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhcCCC
Q 043370 198 LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTH---KSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 198 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p 272 (430)
+..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...+++.++.+|
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 77653 1234567777777788888888888777776 3333 466777777778888 888888888888888888
Q ss_pred CCChhHHHHH
Q 043370 273 QDAAPYVLLS 282 (430)
Q Consensus 273 ~~~~~~~~l~ 282 (430)
.+...|..+.
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 7777666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-08 Score=81.10 Aligned_cols=156 Identities=8% Similarity=0.019 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS-C 82 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~ 82 (430)
.....+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..+.. |+...+...... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455677888899999999999998763 367888999999999999999999998887653 354433322211 1
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C---CHhHHHHHHHHHHhcCChHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--S---DVVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---d~~~~~~li~~~~~~g~~~~A 157 (430)
...+....+...+++.++..+. +...+..+...|...|++++|...|+++.. | +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222233467777777776433 677777888888888888888888877542 2 245777778888888888888
Q ss_pred HHHHHHHH
Q 043370 158 INLFEQME 165 (430)
Q Consensus 158 ~~~~~~m~ 165 (430)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=83.10 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 186 (430)
...+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.... .|+.... .+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHH---
Confidence 3445555666666666666666544 234555666666666666666666666655443 2222211 111000
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
. +...+...+|...+++. ...| +...+..+...+...|++++|...+
T Consensus 83 ------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 ------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 00111111234444433 2234 4666777777778888888888888
Q ss_pred HHHhcCCCCC--ChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 265 EEILGVNPQD--AAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 265 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+++++.+|.. +..+..+..+|...|+.++|...+++.
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 8888777743 457778888888888888887777654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-07 Score=79.89 Aligned_cols=160 Identities=8% Similarity=-0.055 Sum_probs=88.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC----cHHHHHHHHHHHhhhcCCccCHhHH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG----LKEKGMEFFDLMVKKYRRKPRLEHY 212 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 212 (430)
++.++..+...|...+++++|++.|++..+.| +...+..|...|.. + +.++|..+|++..+. + +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 44444444445555555555555555555443 33344444444444 3 555555555555432 1 34444
Q ss_pred HHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCChhHHH
Q 043370 213 TCVVDLLGR----CGYLDEAAALIRNM-PVKAN---AIIWKTLLSACKT----HKSTDMAGRIAEEILGVNPQDAAPYVL 280 (430)
Q Consensus 213 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 280 (430)
..|..+|.. .+++++|.++|++. ...|+ +..+..|-..|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 555555554 55666666666655 22222 5555566556655 56677777777777666 345666777
Q ss_pred HHHHHHhc-c-----chhHHHHHHHHHHhCC
Q 043370 281 LSNIHASA-K-----RWQGVSEFREAMRERN 305 (430)
Q Consensus 281 l~~~~~~~-g-----~~~~a~~~~~~m~~~g 305 (430)
|..+|... | ++++|...++...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777543 2 6777777777666555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-08 Score=99.87 Aligned_cols=152 Identities=13% Similarity=0.002 Sum_probs=117.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
.|++++|++.|++..+.. +-+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999988753 335778889999999999999999999999853 23357889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc---cchhHHHHHHHHHHhCC
Q 043370 231 LIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA---KRWQGVSEFREAMRERN 305 (430)
Q Consensus 231 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~g 305 (430)
.+++. ...| +...|..+...+...|++++|...+++..+.+|.+..++..+..++... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99987 3344 5788999999999999999999999999999999999999999999999 99999999998876543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-07 Score=80.09 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCcHhHH
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA----TLGQGQQIHAEVVKAGASLDVGVI 110 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~ 110 (430)
.++.++..|...|...+++++|+..|++..+.| +...+..+...+.. + +.++|.+.|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356666667777777777777777777776654 45555566666655 5 6777777777776654 45566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhccCCC-C----HhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 111 SSLISMYSR----CGCLDDSVKTFLECEYS-D----VVLWSSMIAAYGF----HGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 111 ~~li~~~~~----~g~~~~A~~~~~~~~~~-d----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
..|..+|.. .+++++|...|++..+. + +.++..|...|.. .+++++|+..|++..+. .++...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 666666665 66777777777665433 2 4666666666666 56677777777776654 12333444
Q ss_pred HHHHHhhhc-C-----cHHHHHHHHHHHhhh
Q 043370 178 SLLYACSHC-G-----LKEKGMEFFDLMVKK 202 (430)
Q Consensus 178 ~ll~a~~~~-g-----~~~~a~~~~~~~~~~ 202 (430)
.|...|... | +.++|..+|+...+.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 555554432 2 666777777666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.4e-07 Score=80.10 Aligned_cols=214 Identities=12% Similarity=0.123 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHhccC---CCCHhHHHHHHHHH----Hhc---CC
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG--CLDDSVKTFLECE---YSDVVLWSSMIAAY----GFH---GK 153 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~d~~~~~~li~~~----~~~---g~ 153 (430)
...++|.++.+.++..++. +..+|+.--......| +++++++.++.+. +.+..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3457899999999998654 7788888888888888 9999999999865 45667787655555 555 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH--HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC------H
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE--KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY------L 225 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~ 225 (430)
+++++++++++.+.. +-|..+|..-.-.+.+.|.++ ++.+.++++.+. -+-+...|+....++.+.|. +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999874 457778887777777888887 999999999875 23366777777777777776 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH-HHHHHHHHhcCC---CCCChhHHHHHHHHHhccchhHHHHHHH
Q 043370 226 DEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDM-AGRIAEEILGVN---PQDAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+++++.++++ ...| |...|+-+-..+.+.|+... ...+.+++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8999988876 4445 78899988888888887544 556777777665 7788999999999999999999999999
Q ss_pred HHHh
Q 043370 300 AMRE 303 (430)
Q Consensus 300 ~m~~ 303 (430)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-07 Score=79.19 Aligned_cols=145 Identities=7% Similarity=0.008 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 189 (430)
+..+...+...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677777888888888877777777777777778888888888888887777653 34556677777777777777
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
++|...|+...+...-.+... +...| +...| +...|..+...+...|+++.|...++++.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777765311111000 00000 01223 24566777777888888888888888888
Q ss_pred cCCCCC
Q 043370 269 GVNPQD 274 (430)
Q Consensus 269 ~~~p~~ 274 (430)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888854
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.2e-09 Score=82.96 Aligned_cols=122 Identities=12% Similarity=0.015 Sum_probs=101.7
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHK 255 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 255 (430)
|...+...|++++|...+..... ..| +...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566778899999999998864 344 3456778999999999999999999987 5555 6888999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHH-HHHHHh
Q 043370 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEF-REAMRE 303 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 303 (430)
+++.|...+++.++++|.++.++..+..+|...|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887665 465543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-07 Score=90.40 Aligned_cols=242 Identities=10% Similarity=0.041 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHCC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHcCCCCcHhH
Q 043370 38 IAWITLIAGKAQNG-------LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQ-QIHAEVVKAGASLDVGV 109 (430)
Q Consensus 38 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~g~~~~~~~ 109 (430)
..|...+.---.++ ..+.+..+|++.+.. ++-+...|...+..+...|+.+.|. ++++..+.. .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 46666665433332 124456788888875 3557788888888888889999996 999999875 4557778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-------------C------------CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEY-------------S------------DVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
+...+...-+.|+++.|.++|+.+.. | ....|...+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88899999999999999999987652 2 1236888888888899999999999999
Q ss_pred HHC-CCCCCHHHHHHHHHHhhh-cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--
Q 043370 165 EQK-EFEANDVTFVSLLYACSH-CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-- 239 (430)
Q Consensus 165 ~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-- 239 (430)
.+. + .+....|......-.+ .++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++. ...|
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 876 2 1123333322222223 356899999999998863 335566778888888999999999999987 3233
Q ss_pred --CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 240 --NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 240 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
....|...+.--..+|+.+.+..+.+++.+..|+++ ....++.-|
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 357899999999999999999999999999999654 333333333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-07 Score=79.37 Aligned_cols=184 Identities=9% Similarity=-0.059 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CH---hHHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASL--DVGVISSLISMYSRCGCLDDSVKTFLECEY--S-DV---VLWS 142 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~---~~~~ 142 (430)
+...+..+...+...|++++|...|+.+++..+.. ....+..+..+|.+.|++++|...|++..+ | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566667778889999999999999999864432 246788899999999999999999998652 2 22 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcHHHHHHHHHHHhhhc
Q 043370 143 SMIAAYGF------------------HGKGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 143 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 203 (430)
.+..++.. .|++++|+..|+++.+. .|+.. ...... ....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~--------------~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK--------------RLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH--------------HHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH--------------HHHHHHHH-
Confidence 55555554 57899999999999886 45432 221111 11111100
Q ss_pred CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 204 RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 204 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++.+....|.+.
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112235677888999999999999887 33343 25677888889999999999999999988888544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-06 Score=84.79 Aligned_cols=113 Identities=9% Similarity=-0.041 Sum_probs=65.6
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCC---hhHHHHHHHHHHHCC-CCCCHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGL---AEDVLDQYNLMRMVG-FRPDKITFV 76 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~t~~ 76 (430)
-|..+|..++..+.+.+.++.|..+|+++. ......|..-+..-.+.++ ++.+..+|++.+... .+|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 356677888888877788888888887765 2355667777776666777 777777777776542 136666665
Q ss_pred HHHHHHhccCCh--------HHHHHHHHHHHH-cCC-CC-cHhHHHHHHHH
Q 043370 77 SVISSCSELATL--------GQGQQIHAEVVK-AGA-SL-DVGVISSLISM 116 (430)
Q Consensus 77 ~ll~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~li~~ 116 (430)
.-+.-..+.++. +...++|+..+. .|. .+ +..+|...+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 555443333322 223355555443 344 33 23455554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-08 Score=90.33 Aligned_cols=197 Identities=9% Similarity=-0.004 Sum_probs=148.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 163 (430)
..|++++|.+++++..+.... . .+...+++++|...|+. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788999999888764221 1 12115788998888765 35678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc---CCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043370 164 MEQK----EFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY---RRKP-RLEHYTCVVDLLGRCGYLDEAAALIRN 234 (430)
Q Consensus 164 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (430)
..+. |-.+. ..+|..+...|...|++++|...|++..+.+ |... ...++..+...|.+ |++++|...|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 3578888899999999999999999876532 1111 24678889999988 999999999987
Q ss_pred C-CCC-----C--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC------hhHHHHHHHHHhccchhHHHHHHHH
Q 043370 235 M-PVK-----A--NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA------APYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 235 m-~~~-----p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
. .+. + ...++..+...+...|++++|...+++.+++.|.+. .++..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 1 145788888889999999999999999987655332 3667777888889999999999998
Q ss_pred HH
Q 043370 301 MR 302 (430)
Q Consensus 301 m~ 302 (430)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-07 Score=78.11 Aligned_cols=143 Identities=3% Similarity=-0.129 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT 87 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 87 (430)
.+..+...|.+.|++++|...|++...++...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344555666666666666666666666666666666666666666666666666666543 3345556666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+++|.+.++.+.+......... |...|. .........|..+..+|...|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~-------~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID-------YKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE-------CGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHH-------HHHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666655422111000 000000 000112356677777777788888888888877764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-07 Score=81.69 Aligned_cols=164 Identities=7% Similarity=-0.074 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC--CccC--H
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-D----VTFVSLLYACSHCGLKEKGMEFFDLMVKKYR--RKPR--L 209 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 209 (430)
..+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...+.+..+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566677778888888888877766432111 1 1233344556677788888888877764211 1111 3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------C
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-------PVKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------D 274 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~ 274 (430)
..++.+...|...|++++|...+++. +..+ ...++..+...|...|++++|...+++.+++.+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777888888888888888877765 2122 1257777888888999999999999888754321 1
Q ss_pred ChhHHHHHHHHHhccchhHH-HHHHHHHH
Q 043370 275 AAPYVLLSNIHASAKRWQGV-SEFREAMR 302 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 302 (430)
..+|..+..+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788889999999999999 77666543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-06 Score=78.63 Aligned_cols=159 Identities=8% Similarity=-0.052 Sum_probs=109.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHH
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKE-FEANDV----TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTC 214 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 214 (430)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++++.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888876632 122211 2334556666777888888888887753111222 235778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-------CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------CChhHH
Q 043370 215 VVDLLGRCGYLDEAAALIRNM-------PVK-AN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------DAAPYV 279 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m-------~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~ 279 (430)
+...|...|++++|...|+++ +.. +. ..+|..+...|...|++++|...+++.+++.+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888777765 111 22 346778888899999999999999988754421 256788
Q ss_pred HHHHHHHhccc-hhHHHHHHHHHH
Q 043370 280 LLSNIHASAKR-WQGVSEFREAMR 302 (430)
Q Consensus 280 ~l~~~~~~~g~-~~~a~~~~~~m~ 302 (430)
.+..+|...|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 689988887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.2e-08 Score=78.17 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=85.3
Q ss_pred CCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH
Q 043370 204 RRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVL 280 (430)
Q Consensus 204 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 280 (430)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++.+++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 4566777888888889999999988887 4445 67888888888999999999999999999999999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHHhCC
Q 043370 281 LSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 281 l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+..+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.4e-08 Score=86.57 Aligned_cols=186 Identities=7% Similarity=-0.044 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
..+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 334444444444444444444444322 2244445555555555555555555555554431 223344445555555
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHH---HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDL---LGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a 260 (430)
..|++++|...|....+. .|+. ..+...+.. ..+...+.. .......++......+ ..+ ..|+.+.|
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 555555555555554432 1110 001111111 111111111 1111222233332222 222 25777888
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhc-cchhHHHHHHHHHHh
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASA-KRWQGVSEFREAMRE 303 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 303 (430)
.+.+++..+++|.+......+...+... +.+++|.++|....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888888886666666666666665 667888888887754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.2e-08 Score=77.54 Aligned_cols=97 Identities=8% Similarity=-0.047 Sum_probs=80.6
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++.++|.++.++..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777788888888888888888876 3344 6778888888888999999999999999999998899999999999
Q ss_pred HhccchhHHHHHHHHHHhC
Q 043370 286 ASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~ 304 (430)
...|++++|...++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999998887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-06 Score=76.36 Aligned_cols=158 Identities=8% Similarity=0.011 Sum_probs=83.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HhHHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVG-FRPDKI----TFVSVISSCSELATLGQGQQIHAEVVKAGAS-LD----VGVISS 112 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~ 112 (430)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+.++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677777777777777776532 122211 2223455555666777777777777663222 12 224666
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 043370 113 LISMYSRCGCLDDSVKTFLECEY------S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK----EFEAN-DVTFV 177 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~~------~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 177 (430)
+...|...|++++|...|++..+ . ...+|+.+...|.+.|++++|+..+++..+. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666655431 1 1234555555666666666666666554431 11111 34455
Q ss_pred HHHHHhhhcC-cHHHHHHHHHHHh
Q 043370 178 SLLYACSHCG-LKEKGMEFFDLMV 200 (430)
Q Consensus 178 ~ll~a~~~~g-~~~~a~~~~~~~~ 200 (430)
.+..++...| ..++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555555 2455555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-07 Score=78.72 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=64.5
Q ss_pred HHcCChHHHHH---HHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCh
Q 043370 17 MKSGSLVEGEK---VIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRP-DKITFVSVISSCSELATL 88 (430)
Q Consensus 17 ~~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~ 88 (430)
...|++++|.+ ++..-+.....+++.+...+...|++++|+..+++..+. +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777 554444345567777777777777777777777776541 1111 234455566666666777
Q ss_pred HHHHHHHHHHHHc----CCCC--cHhHHHHHHHHHHhcCCHHHHHHHHhc
Q 043370 89 GQGQQIHAEVVKA----GASL--DVGVISSLISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 89 ~~a~~~~~~~~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 132 (430)
++|...+++..+. +..+ ...++..+...|...|++++|...|++
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7776666665442 1011 123445555555555666555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=72.51 Aligned_cols=107 Identities=13% Similarity=0.017 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACK 252 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 252 (430)
.+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555666666666666666665542 1224556666666666666666666666655 3333 4666777777777
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
..|++++|...|++.++++|.++.++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 7888888888888888888877766665544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-05 Score=70.70 Aligned_cols=236 Identities=10% Similarity=0.060 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
.++.+-....+.+..++|++++++++..+ +-+...|+.--..+...+ .++++..+++.+++..++ +..+|+--...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444444445556678999999999864 334555777777777777 599999999999987655 788888777777
Q ss_pred Hhc-C-CHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043370 118 SRC-G-CLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGE--------EAINLFEQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 118 ~~~-g-~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
.+. + ++++++++++.+.+ ++-.+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 776 7 88899999988764 46677776666665555565 8899999888874 446777777777777
Q ss_pred hcCc-------HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH--------------------HHHHHHHHhC-C
Q 043370 185 HCGL-------KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL--------------------DEAAALIRNM-P 236 (430)
Q Consensus 185 ~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~ 236 (430)
+.+. ++++.+.+++++.. .+-|...|+-+-..+.+.|+. .+..++..++ +
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred hccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 7665 67888888887753 233566777666666665543 3344444444 1
Q ss_pred C-------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-cCCCCCChhHH
Q 043370 237 V-------KANAIIWKTLLSACKTHKSTDMAGRIAEEIL-GVNPQDAAPYV 279 (430)
Q Consensus 237 ~-------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~ 279 (430)
. .++...+..|...|...|+.++|.++++.+. +.+|.....|.
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 1 1456666677777777777777777777775 55664444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-06 Score=70.97 Aligned_cols=124 Identities=9% Similarity=-0.078 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++... .+..++..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 456666666777777777777777766543 33555666666666666666666666666666532 2455555555555
Q ss_pred HhcCCHHHHHHHHhccC---CCCHhHHHHH--HHHHHhcCChHHHHHHHHH
Q 043370 118 SRCGCLDDSVKTFLECE---YSDVVLWSSM--IAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 118 ~~~g~~~~A~~~~~~~~---~~d~~~~~~l--i~~~~~~g~~~~A~~~~~~ 163 (430)
.+.|++++|...|++.. +.+...+..+ ...+...|++++|+..+.+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555555555555432 1233333222 2224444555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-06 Score=76.71 Aligned_cols=182 Identities=9% Similarity=-0.012 Sum_probs=89.7
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHhccCChHHHHHHHHHHHHcCCCCc---------------
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSV-------ISSCSELATLGQGQQIHAEVVKAGASLD--------------- 106 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------l~~~~~~g~~~~a~~~~~~~~~~g~~~~--------------- 106 (430)
+.++..+|.+.|.+..+.. +-....|+.+ ...+.+.+...++...++..++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4667777777777776653 3345556555 2333333333333222222222 2221
Q ss_pred -------HhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHH
Q 043370 107 -------VGVISSLISMYSRCGCLDDSVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN--DVT 175 (430)
Q Consensus 107 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t 175 (430)
..+.-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 22334455566666666666666666542 322244444555666666666666665433321 111 124
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC--HhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR--LEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+..+..++...|++++|...|++.... ...|. .........++.+.|+.++|...|+++
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555666666666666666665432 11132 223344444455555555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=74.59 Aligned_cols=92 Identities=9% Similarity=-0.036 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|+++++..+. +...+..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 344445555555555555555555555432 223444444555555555555555555555444322 333344444444
Q ss_pred HhcCCHHHHHHHHh
Q 043370 118 SRCGCLDDSVKTFL 131 (430)
Q Consensus 118 ~~~g~~~~A~~~~~ 131 (430)
.+.|++++|...|+
T Consensus 115 ~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 115 LRLKAPLKAKECFE 128 (151)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6.2e-07 Score=72.54 Aligned_cols=125 Identities=12% Similarity=0.005 Sum_probs=81.6
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT 253 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 253 (430)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|...+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555555555555555555442 1224455556666666666666666666554 2223 45677777777888
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHH--HHHHhccchhHHHHHHHHHH
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLS--NIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~ 302 (430)
.|++++|...++++.+..|.+...+..+. ..+...|++++|...+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888887777764444 44778889999888887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-07 Score=68.93 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVK-ANAIIWKTLLSAC 251 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 251 (430)
.++..+...+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|...++++ ... .+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 33444444555555555555555555432 1223445555555555666666666655554 112 2455666677777
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 252 KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
...|+++.|...++++.+..|.++..+..+..++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 7777788888888877777777777776666665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-06 Score=76.12 Aligned_cols=161 Identities=10% Similarity=-0.016 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----Hh
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKAGASLD-----VGVISSLISMYSRCGCLDDSVKTFLECEY-----SD----VV 139 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~ 139 (430)
.+...+..+...|++++|.+.+....+...... ...+..+...|...|++++|...|++... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334444445555555555555555544322111 11233345555556666666665554321 11 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc---CCcc-CH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQK-EFEAN-----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY---RRKP-RL 209 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~ 209 (430)
+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...|...|++++|..++++..+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666666666666666666666665421 00111 1356666666667777777776666654321 1111 14
Q ss_pred hHHHHHHHHHhhcCCHHHH-HHHHHh
Q 043370 210 EHYTCVVDLLGRCGYLDEA-AALIRN 234 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A-~~~~~~ 234 (430)
.+|..+...|.+.|++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5566667777777777666 554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=71.43 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=89.3
Q ss_pred CccC-HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 205 RKPR-LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 205 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..+++.++++|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 467778899999999999999999987 4445 688899999999999999999999999999999999999999
Q ss_pred HHHHHhccchhHHHHHHHHHHhC
Q 043370 282 SNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 282 ~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-07 Score=72.14 Aligned_cols=97 Identities=11% Similarity=-0.022 Sum_probs=79.0
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++.++|.++..+..+..+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777788888888888888876 3344 6777888888888899999999999999988998888999999999
Q ss_pred HhccchhHHHHHHHHHHhC
Q 043370 286 ASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~ 304 (430)
...|++++|...++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999988887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-07 Score=84.91 Aligned_cols=94 Identities=12% Similarity=0.013 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++++++|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467788888888999999999888877 3344 67888889999999999999999999999999999999999999999
Q ss_pred hccchhHH-HHHHHHHH
Q 043370 287 SAKRWQGV-SEFREAMR 302 (430)
Q Consensus 287 ~~g~~~~a-~~~~~~m~ 302 (430)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44666663
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-07 Score=69.90 Aligned_cols=116 Identities=8% Similarity=-0.018 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSAC 251 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 251 (430)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34444555555555555555555555442 1224455555666666666666666666554 2223 455666777777
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 252 KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
...|+++.|...+++..+..|.++..+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 7888888888888888877887777777777777776654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=66.34 Aligned_cols=95 Identities=9% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555555555555555555555432 2344455555555555555555555555555543 2244555555555
Q ss_pred HHhcCCHHHHHHHHhcc
Q 043370 117 YSRCGCLDDSVKTFLEC 133 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~ 133 (430)
|.+.|++++|...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55555555555555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.8e-07 Score=69.22 Aligned_cols=112 Identities=9% Similarity=-0.008 Sum_probs=59.9
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT 253 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 253 (430)
+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...+++. ...| +...|..+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 333444444444444444444444321 1113344444444444455555555444443 1122 45566666666777
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK 289 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 289 (430)
.|++++|...+++..+.+|.+...+..+..++...|
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777777766677777766666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=83.46 Aligned_cols=189 Identities=6% Similarity=-0.050 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++++++... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34566667777777777777777777777653 33566677777777777777777777777776542 35667777777
Q ss_pred HHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYS---DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
+|.+.|++++|...|+..... +...+...+....+. .++. -+........+++......+ ..+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 777778888777777664321 110111111111111 1111 11222223233444333333 222 25788888
Q ss_pred HHHHHHHhhhcCCccC-HhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 043370 193 MEFFDLMVKKYRRKPR-LEHYTCVVDLLGRC-GYLDEAAALIRNM 235 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m 235 (430)
.+.++...+ ..|+ ......+...+.+. +.+++|.++|...
T Consensus 155 ~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 155 LEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888877763 3454 33444455555555 6688888888877
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=76.47 Aligned_cols=192 Identities=9% Similarity=-0.036 Sum_probs=136.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHH-------HHHHHhcCCHHHHHHHHhccCC--C-------C----------
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSL-------ISMYSRCGCLDDSVKTFLECEY--S-------D---------- 137 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~--~-------d---------- 137 (430)
..++...|.+.|.++.+..+. ....|+.+ ...+.+.++..++...+..-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578999999999999987644 66777766 4555555555555555543221 1 1
Q ss_pred -----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC--Hh
Q 043370 138 -----VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR--LE 210 (430)
Q Consensus 138 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 210 (430)
...+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 123445667788899999999999988765 355545556666888999999999999866432 1 221 24
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM---PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
.+..+..++.+.|++++|+..|++. +..|. ...+.....++...|+.++|...|+++...+|. +..+..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 6777888999999999999999987 22143 335566666789999999999999999999995 4444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.3e-07 Score=74.52 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=33.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCHhHHHHHHHHHHhcCCh
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---------SDVVLWSSMIAAYGFHGKG 154 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~d~~~~~~li~~~~~~g~~ 154 (430)
..|++++|.++++.+.. .......++..+...|...|++++|...|++... ....+++.+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 1122344445555555555555555555444221 0123344444444444555
Q ss_pred HHHHHHHHHH
Q 043370 155 EEAINLFEQM 164 (430)
Q Consensus 155 ~~A~~~~~~m 164 (430)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-06 Score=65.76 Aligned_cols=114 Identities=6% Similarity=-0.075 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+... .+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 45677777777777888888888887777653 33566677777777777777777777777776542 25566666666
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhc
Q 043370 116 MYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~ 151 (430)
+|.+.|++++|.+.|++.. +.+...+..+...+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 6666666666666666543 22334444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-06 Score=65.37 Aligned_cols=115 Identities=10% Similarity=-0.058 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+....+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3455555666666666666666666665542 33455555555666666666666666666555432 234455555555
Q ss_pred HHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC
Q 043370 117 YSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGK 153 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~ 153 (430)
|.+.|++++|...|++.. +.+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555554432 2234444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.7e-07 Score=73.58 Aligned_cols=127 Identities=9% Similarity=0.063 Sum_probs=93.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH-HhhcCCH--
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL-LGRCGYL-- 225 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 225 (430)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888877753 445677888888888888888888888888754 12356677777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 226 DEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
++|...+++. ...| +...|..+...+...|+++.|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888876 3334 467777888888999999999999999999988665433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=79.84 Aligned_cols=174 Identities=8% Similarity=-0.106 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
+..+......|++++|.+.++.-.. .....|..+...+...|++++|+..|++..+.. |+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------
Confidence 3445555566777777766664332 144567777777888888888888888877642 221100000
Q ss_pred cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 043370 188 LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAE 265 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 265 (430)
..+. -.. ......+..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...++
T Consensus 78 ~~~~-------~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLD-------KKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHH-------HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHH-------HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0000 000 001356667777788888888888888776 3333 57778888888999999999999999
Q ss_pred HHhcCCCCCChhHHHHHHHHHhccchhHHH-HHHHHHHhCC
Q 043370 266 EILGVNPQDAAPYVLLSNIHASAKRWQGVS-EFREAMRERN 305 (430)
Q Consensus 266 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 305 (430)
+.++++|.+..++..+..++...++.+++. ..++.|...+
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999989999999999999888888877 5566665444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-05 Score=71.89 Aligned_cols=216 Identities=11% Similarity=0.086 Sum_probs=159.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHhccC---CCCHhHHHHHHHHHHhc-C-ChHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG-CLDDSVKTFLECE---YSDVVLWSSMIAAYGFH-G-KGEEA 157 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~-g-~~~~A 157 (430)
+....++|.++.+.++..+.. +..+|+.--..+...| .++++++.++.+. .++..+|+.-...+.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 334557899999999998655 7788888888888888 5999999999875 45778898877777776 7 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH--------HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC-----
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKE--------KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY----- 224 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 224 (430)
+++++++.+.. +-|...|+.-.-...+.|..+ ++++.++++.+. .+-+...|+....++.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccch
Confidence 99999999864 446677776555555555555 899999999875 23477788888888888776
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhcCC------CCC
Q 043370 225 --LDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKST--------------------DMAGRIAEEILGVN------PQD 274 (430)
Q Consensus 225 --~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~ 274 (430)
++++++.++++ ...| |...|+-+-..+.+.|+. ........++.... +..
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888776 4445 788898877777776654 12222222222221 346
Q ss_pred ChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+.+...|+..|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.7e-05 Score=69.51 Aligned_cols=241 Identities=12% Similarity=0.053 Sum_probs=154.0
Q ss_pred HHHHHHHHHH---HHHCCChh-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC----------hHHHHHHHHHHHHc
Q 043370 37 VIAWITLIAG---KAQNGLAE-DVLDQYNLMRMVGFRPDK-ITFVSVISSCSELAT----------LGQGQQIHAEVVKA 101 (430)
Q Consensus 37 ~~~~~~li~~---~~~~g~~~-~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~ 101 (430)
+..|..+... ..+.|.++ +|++++..++.. .|+. ..|+.--..+...+. ++++..+++.++..
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 4455544433 34566665 789999999875 4544 345543333332222 57788888888877
Q ss_pred CCCCcHhHHHHHHHHHHhcC--CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHH
Q 043370 102 GASLDVGVISSLISMYSRCG--CLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGK-GEEAINLFEQMEQKEFEANDVT 175 (430)
Q Consensus 102 g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t 175 (430)
.++ +..+|+--...+.+.| .+++++.+++.+. .+|-.+|+.-...+...|. ++++++.+.++.+.. +-|...
T Consensus 104 ~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 104 NPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp CTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred CCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 544 7788887777777777 4888888888765 4577788877777777787 588999998888864 446666
Q ss_pred HHHHHHHhhhc--------------CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc-----------CCHHHHHH
Q 043370 176 FVSLLYACSHC--------------GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC-----------GYLDEAAA 230 (430)
Q Consensus 176 ~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~ 230 (430)
|+.....+.+. +.++++.+.+...... .+-|...|+-+-..+.+. +.++++.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 66555544443 4577788888887753 233566666555555544 45677777
Q ss_pred HHHhC-CCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 231 LIRNM-PVKANAIIWKTLLSA-----CKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 231 ~~~~m-~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
.++++ ...||. .|..+-.+ ....+..++....+.++.+++|....-|.-|...
T Consensus 260 ~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 260 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 77776 445543 34322221 1235666777788888888888655555544433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.5e-07 Score=72.65 Aligned_cols=118 Identities=7% Similarity=0.012 Sum_probs=78.5
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH-HHhcCCH--H
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM-YSRCGCL--D 124 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~ 124 (430)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776653 44566777777777777777777777777776543 256666667766 6677776 7
Q ss_pred HHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 125 DSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 125 ~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+|...|+... +.+...|..+...|...|++++|+..|++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777776643 335666777777777777777777777777764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00013 Score=70.33 Aligned_cols=284 Identities=8% Similarity=-0.067 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCC-hhHHHHHHHHHHHC-CCC-CCHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGL-AEDVLDQYNLMRMV-GFR-PDKITFVSVISS 81 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-p~~~t~~~ll~~ 81 (430)
.+|...+..+-. |+++.|..+|++.. .|++..|...+.-..+.+. .+....+|+..+.. |.. ++...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 356666666655 78999999998765 4788888888877666653 35566777777653 433 355667776665
Q ss_pred Hh----ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH------------------------------------------
Q 043370 82 CS----ELATLGQGQQIHAEVVKAGASLDVGVISSLIS------------------------------------------ 115 (430)
Q Consensus 82 ~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~------------------------------------------ 115 (430)
+. ..++.+.+..+|+++++.....-..+|.....
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 43 23567788888888887422111112211111
Q ss_pred ------HHHhc--CC-----HHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 116 ------MYSRC--GC-----LDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 116 ------~~~~~--g~-----~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
.-... |- .+.+..+|+++. ..+...|...+.-+.+.|+.++|.++|++.... |....+..
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~- 250 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL- 250 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH-
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH-
Confidence 10000 00 122333444332 223455555555666666677777777766665 33221111
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhhc---C--------CccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHH
Q 043370 180 LYACSHCGLKEKGMEFFDLMVKKY---R--------RKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA--NAIIWKT 246 (430)
Q Consensus 180 l~a~~~~g~~~~a~~~~~~~~~~~---~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ 246 (430)
+|......++. ++.+.+.+ . .......|...++.+.+.+.++.|..+|++. ..| +...|..
T Consensus 251 --~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~ 324 (493)
T 2uy1_A 251 --YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIY 324 (493)
T ss_dssp --HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHH
T ss_pred --HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHH
Confidence 11111001111 11221110 0 0001234555566666678899999999887 223 3344433
Q ss_pred HHHH-HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 247 LLSA-CKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 247 ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.... +...++.+.|..+|+...+..|.++..+...++...+.|+.+.|..+++..
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 222346899999999998877866766677777778889999999888875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.9e-07 Score=68.29 Aligned_cols=94 Identities=14% Similarity=0.014 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++.++++|.++.+|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555556666666666666666655 2233 456666666677777777777777777777777777777777777777
Q ss_pred ccchhHHHHHHHHHHh
Q 043370 288 AKRWQGVSEFREAMRE 303 (430)
Q Consensus 288 ~g~~~~a~~~~~~m~~ 303 (430)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 7777777777776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.4e-07 Score=75.75 Aligned_cols=149 Identities=5% Similarity=-0.072 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------------
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPIR---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK------------ 72 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------ 72 (430)
..+..+......|+++.|.+.|+.-... ....|..+...+.+.|++++|+..|++..+.. +.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKK 84 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHH
Confidence 3455566666778888888888754422 45677888888999999999999999998752 1121
Q ss_pred ----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHH
Q 043370 73 ----ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMI 145 (430)
Q Consensus 73 ----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li 145 (430)
..+..+..++...|++++|...++..++.. +.+..++..+..+|...|++++|...|++.. +.+...+..+.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 455555555566666666666666665543 2244555555555555555555555555432 22444444444
Q ss_pred HHHHhcCChHHHH
Q 043370 146 AAYGFHGKGEEAI 158 (430)
Q Consensus 146 ~~~~~~g~~~~A~ 158 (430)
..+...++.+++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=64.50 Aligned_cols=97 Identities=10% Similarity=0.018 Sum_probs=72.3
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC--CChhHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ--DAAPYVLLSNI 284 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 284 (430)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...+++..+..|. +...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445566677777777777777777765 2223 5666777777788888888888888888888887 77788888888
Q ss_pred HHhc-cchhHHHHHHHHHHhCC
Q 043370 285 HASA-KRWQGVSEFREAMRERN 305 (430)
Q Consensus 285 ~~~~-g~~~~a~~~~~~m~~~g 305 (430)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888776544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=69.19 Aligned_cols=91 Identities=13% Similarity=-0.020 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
.+..+...+.+.|++++|...|+... +.+...|..+..+|...|++++|+..|++..... +.+...+..+..++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 33444444444444444444444322 2244444444445555555555555555544432 2233444444445555
Q ss_pred cCcHHHHHHHHHHHh
Q 043370 186 CGLKEKGMEFFDLMV 200 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~ 200 (430)
.|++++|...|+...
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.42 E-value=4.1e-06 Score=76.80 Aligned_cols=142 Identities=12% Similarity=-0.057 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...|.+.|++++|+..|++.++.. |+... -..+.+.++-. ....++..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-----------~~~~~~~~~~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS-----------FSNEEAQKAQA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC-----------CCSHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hcccc-----------CChHHHHHHHH--------HHHHHHHHHHH
Confidence 34566666777777777777777777776642 22100 00000000000 00234444555
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
+|.+.|++++|...|++.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554432 2344455555555555555555555555555431 22334444555555555555554
Q ss_pred -HHHHHHH
Q 043370 193 -MEFFDLM 199 (430)
Q Consensus 193 -~~~~~~~ 199 (430)
...+..|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=6e-06 Score=62.05 Aligned_cols=106 Identities=13% Similarity=0.000 Sum_probs=55.1
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT 253 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 253 (430)
+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444444555555544444432 1123344444555555555555555555444 1222 34556666666666
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
.|+++.|...+++..+.+|.++..+..+..
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 777777777777777666655555544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=67.28 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|+.++|+..+++.++++|.++.++..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555677788889999999888887 4445 6778888888899999999999999999999998889999999999999
Q ss_pred cchhHHHHHHHHHHhC
Q 043370 289 KRWQGVSEFREAMRER 304 (430)
Q Consensus 289 g~~~~a~~~~~~m~~~ 304 (430)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=70.17 Aligned_cols=104 Identities=12% Similarity=-0.025 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 043370 173 DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSA 250 (430)
Q Consensus 173 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 250 (430)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445666666666777777777777776643 1224556666666666677777776666665 3333 35566666666
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 251 CKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
+...|++++|...+++.++++|.+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 6666777777777776666666655544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-06 Score=65.31 Aligned_cols=92 Identities=11% Similarity=-0.067 Sum_probs=43.6
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHK 255 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 255 (430)
.+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3333444444444444444444332 1113344444444444445555544444443 2222 3445555555566666
Q ss_pred ChhHHHHHHHHHhcCC
Q 043370 256 STDMAGRIAEEILGVN 271 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~ 271 (430)
++++|...+++..+++
T Consensus 87 ~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 87 EYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666666555
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.3e-06 Score=65.20 Aligned_cols=96 Identities=10% Similarity=-0.012 Sum_probs=65.0
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|.++..+..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4555666666666666666666666655 2223 4566666666677777777777777777777777777777777777
Q ss_pred HhccchhHHHHHHHHHHh
Q 043370 286 ASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~ 303 (430)
...|++++|...+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-06 Score=67.44 Aligned_cols=100 Identities=8% Similarity=-0.068 Sum_probs=52.6
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTH 254 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 254 (430)
..+...+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33444445555555555555555432 1123444555555555555555555555544 2222 344455555666666
Q ss_pred CChhHHHHHHHHHhcCCCCCChhH
Q 043370 255 KSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 255 ~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
|++++|...+++.+++.|.++...
T Consensus 100 g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CCHHHHHHHHHHHHHhCCCCcchH
Confidence 666666666666666666554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.6e-06 Score=63.90 Aligned_cols=75 Identities=12% Similarity=-0.046 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
..+..+...|...|++++|...+++. ...| +...|..+...+...|++++|...+++..+.+|.+...+..+..+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34444444455555555555554443 2222 345555555666666667777777776666666555555444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-06 Score=67.84 Aligned_cols=96 Identities=17% Similarity=-0.016 Sum_probs=80.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV 216 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 216 (430)
+...|..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 56678888889999999999999999988863 346778888888999999999999999998764 133577888899
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 043370 217 DLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m 235 (430)
.+|.+.|++++|...|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999998877
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.7e-06 Score=64.83 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=86.4
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
+...+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|++++|...+++..+..|.++..+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5677888888899999999999999887 55676 677888888899999999999999999999998999999999
Q ss_pred HHHHhccchhHHHHHHHHHHhC
Q 043370 283 NIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.5e-05 Score=73.91 Aligned_cols=191 Identities=5% Similarity=-0.126 Sum_probs=118.6
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCC-C---------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCcH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRP-D---------------KITFVSVISSCSELATLGQGQQIHAEVVKAG-ASLDV 107 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~---------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~ 107 (430)
..+.+.|++++|++.|.++.+..... + ...+..+...|...|++++|.+.+..+.+.- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34566677777777777776542111 0 1235666777777777777777777665421 11111
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHhccCC--------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC--C--CC
Q 043370 108 ----GVISSLISMYSRCGCLDDSVKTFLECEY--------S-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK--E--FE 170 (430)
Q Consensus 108 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~ 170 (430)
.+.+.+...+...|+.+.|..++..... . -..++..+...|...|++++|..++++.... + -+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2334444555566777777777765421 1 1346677788888888888888888876542 1 11
Q ss_pred CC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc---CCccC--HhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 171 AN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY---RRKPR--LEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 171 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
|. ..++..++..|...|++++|..++++..... ..+|. ...+..+...+...|++++|...|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 3467777788888889988888888765431 11111 245677777888889998887776554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.31 E-value=6.6e-06 Score=78.85 Aligned_cols=95 Identities=17% Similarity=0.055 Sum_probs=77.5
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
...|..+..+|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 3344 67888899999999999999999999999999999999999999999
Q ss_pred hccchhHHHH-HHHHHHh
Q 043370 287 SAKRWQGVSE-FREAMRE 303 (430)
Q Consensus 287 ~~g~~~~a~~-~~~~m~~ 303 (430)
..++++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998774 4555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.5e-06 Score=62.28 Aligned_cols=97 Identities=10% Similarity=0.068 Sum_probs=86.3
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
....+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...+++..+..|.++..+..+..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778888999999999999999987 3334 6788888888999999999999999999999998999999999999
Q ss_pred HhccchhHHHHHHHHHHhC
Q 043370 286 ASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~ 304 (430)
...|++++|...++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0002 Score=64.67 Aligned_cols=217 Identities=8% Similarity=0.064 Sum_probs=154.3
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 043370 84 ELATL-GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC----------LDDSVKTFLECE---YSDVVLWSSMIAAYG 149 (430)
Q Consensus 84 ~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~d~~~~~~li~~~~ 149 (430)
+.|.+ ++|..+.+.++..++. +..+|+.--......|. +++++.+++.+. +++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44554 5789999999887544 56666655444444333 577888887764 468889988887888
Q ss_pred hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc-HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc----
Q 043370 150 FHG--KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL-KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC---- 222 (430)
Q Consensus 150 ~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 222 (430)
+.| .+++++.+++++.+.. +-|...|+.-.-.+...|. .+++.+.++.+.+. .+-+...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 877 4899999999999875 4577788877777777887 68999999999875 234666777666665554
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhcCCCCCChhHH
Q 043370 223 ----------GYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTH-----------KSTDMAGRIAEEILGVNPQDAAPYV 279 (430)
Q Consensus 223 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~ 279 (430)
+.++++++.+++. ...| |...|+-+-..+... +.++++++.++++.+++|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888877 3445 677887665555554 4578999999999999997744333
Q ss_pred HHHH---HHHhccchhHHHHHHHHHHhC
Q 043370 280 LLSN---IHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 280 ~l~~---~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.++. .....|..+++...+.++.+-
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3322 222456777888888888653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-05 Score=61.49 Aligned_cols=27 Identities=15% Similarity=0.039 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
+|..+..++...|++++|++.|++.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555556666666666665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-05 Score=61.25 Aligned_cols=94 Identities=5% Similarity=-0.100 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++..++.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44455555555555555555555555555432 223444555555555555555555555555444321 3344444444
Q ss_pred HHHhcCCHHHHHHHHh
Q 043370 116 MYSRCGCLDDSVKTFL 131 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~ 131 (430)
+|...|++++|...|+
T Consensus 86 ~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 86 CQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4444444444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.23 E-value=2e-05 Score=75.96 Aligned_cols=118 Identities=9% Similarity=-0.013 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcH
Q 043370 113 LISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 189 (430)
+...|.+.|++++|.+.|++.. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+..++..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445566677777777776543 3356666777777777777777777777766652 23455666666667777777
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHH--HhhcCCHHHHHHHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDL--LGRCGYLDEAAALIR 233 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 233 (430)
++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777666431 1122333334333 556666666666665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-05 Score=60.74 Aligned_cols=59 Identities=10% Similarity=-0.064 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
|..+...+.+.|++++|++.|++.++.. +-+..+|..+..+|...|++++|...+++.+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444431 1223344444444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=59.22 Aligned_cols=95 Identities=11% Similarity=0.011 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP--DKITFVSVISS 81 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~ 81 (430)
.++..+...|.+.|++++|...|++.. ..+...|..+...+...|++++|+..|++..+.. +. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 445555556666666666666665432 2345555556666666666666666666665542 22 34555555556
Q ss_pred Hhcc-CChHHHHHHHHHHHHcC
Q 043370 82 CSEL-ATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 82 ~~~~-g~~~~a~~~~~~~~~~g 102 (430)
+... |++++|.+.+..+.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 6666 66666666666655543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-06 Score=80.56 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=54.8
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 261 (430)
.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444432 1112344444555555555555555554444 2223 3445555555555556666666
Q ss_pred HHHHHHhcCCCCCChhHHHHHHH--HHhccchhHHHHHHH
Q 043370 262 RIAEEILGVNPQDAAPYVLLSNI--HASAKRWQGVSEFRE 299 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 299 (430)
..++++.+++|.+..++..+..+ +...|++++|.+.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666655555555555555544 555556666555554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0006 Score=65.76 Aligned_cols=238 Identities=8% Similarity=-0.054 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
.+..+|++++... +.+..+|...+..+.+.|+.+.|..+|++.. +.+...|. .|+...+.++. ++.+.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHH
Confidence 4566788877753 4467888888888999999999999998643 23333333 23332222222 3332221
Q ss_pred ---------CCCC---CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC-CHHHHHHHHHh
Q 043370 168 ---------EFEA---NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG-YLDEAAALIRN 234 (430)
Q Consensus 168 ---------g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~ 234 (430)
+..+ ....|...+....+.+..+.|+.+|+.. +..+ .+...|......-.+.+ +.+.|..+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0011 1244556666666778899999999998 4312 34455544333333334 69999999987
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh----CCCCC
Q 043370 235 M--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE----RNVKK 308 (430)
Q Consensus 235 m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~~ 308 (430)
. ...-+...|...+.-....|+.+.|..+|+++ +.....|...+..-...|+.+.+..++++..+ .+ ..
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~-~~ 420 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADA-IL 420 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTC-CB
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccc-cC
Confidence 6 22113455777777788899999999999997 23456777778777888999999998887763 11 11
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCC
Q 043370 309 EPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDT 357 (430)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~ 357 (430)
+|.. + ...-.+.+.....++.++.+-.-..+.|-.
T Consensus 421 ~~~~----~----------~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 421 PPLP----P----------REHNVQMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp CCCC----C----------C--CCCCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred Cccc----c----------cccHHHHHHHhhhHHHHHHHhhhhccccCC
Confidence 1100 0 011223345566677888887777777755
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=60.95 Aligned_cols=61 Identities=7% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 44445555555555555555555554432 22344444444444455555555555544443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.18 E-value=8e-06 Score=62.65 Aligned_cols=62 Identities=8% Similarity=-0.010 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 445556666666666666666666665542 33445555555555666666666666655543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=61.00 Aligned_cols=92 Identities=7% Similarity=-0.079 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.++..+. +...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344455555666666666666655542 234455555555555556666666666555554322 44455555555555
Q ss_pred cCCHHHHHHHHhcc
Q 043370 120 CGCLDDSVKTFLEC 133 (430)
Q Consensus 120 ~g~~~~A~~~~~~~ 133 (430)
.|++++|...|++.
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.7e-05 Score=70.94 Aligned_cols=191 Identities=10% Similarity=0.004 Sum_probs=137.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCc----------------HhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLD----------------VGVISSLISMYSRCGCLDDSVKTFLECEY-----SD 137 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d 137 (430)
...+.+.|++++|.+.+..+++...... ...+..|+..|.+.|++++|.+.+....+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456678999999999999988643321 12467899999999999999999987642 11
Q ss_pred H----hHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCc--
Q 043370 138 V----VLWSSMIAAYGFHGKGEEAINLFEQMEQ----KEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK-- 206 (430)
Q Consensus 138 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-- 206 (430)
. ...+.+-..+...|++++|.+++++... .+..+. ..++..+...+...|++++|..+++.+.....-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444455567899999999988754 233333 4567788899999999999999999876542211
Q ss_pred -c-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 207 -P-RLEHYTCVVDLLGRCGYLDEAAALIRNM-------PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 207 -p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
+ ....+..++..|...|++++|..++++. +..|. ...+..+...+...++++.|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2467888999999999999999998765 21111 34556666667888999999998888863
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=73.04 Aligned_cols=90 Identities=12% Similarity=-0.016 Sum_probs=78.6
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|...++++++++|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4577888999999999999999999887 5556 5778888989999999999999999999999999999999999999
Q ss_pred HhccchhHHHHH
Q 043370 286 ASAKRWQGVSEF 297 (430)
Q Consensus 286 ~~~g~~~~a~~~ 297 (430)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=63.43 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR-PD----KITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
.++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666665542100 11 1244445555555555555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=9.2e-06 Score=62.51 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 244 WKTLLSACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
+..+...+...|++++|...++++.+..|.+ +.++..+..+|...|++++|...++...
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444444444443 3334444444444444444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-05 Score=63.17 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
+..+...|...|++++|+..+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al 36 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRL 36 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444444444455555555444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.4e-05 Score=58.56 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=46.5
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCH---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHh
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRL---EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKT 253 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~ 253 (430)
.+...|++++|...|+.+.+... .+. ..+..+..+|.+.|++++|...|++. ...|+ ...+..+..++..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444444555444444443211 111 24444445555555555555555444 11221 3445555555666
Q ss_pred cCChhHHHHHHHHHhcCCCCCChh
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
.|+++.|...++++....|+++..
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHH
Confidence 666777777777666666644433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.06 E-value=6.8e-06 Score=75.40 Aligned_cols=147 Identities=14% Similarity=-0.043 Sum_probs=82.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777778888889999999999988774 454432 223344444332221 136778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH-HhccchhHH
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH-ASAKRWQGV 294 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 294 (430)
+|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++++|.+..++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988877 3344 6778888888899999999999999999999998888888877773 445666777
Q ss_pred HHHHHHHHhC
Q 043370 295 SEFREAMRER 304 (430)
Q Consensus 295 ~~~~~~m~~~ 304 (430)
...++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7788777543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=63.49 Aligned_cols=62 Identities=16% Similarity=-0.003 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcC-------CCCCChhH----HHHHHHHHhccchhHHHHHHHHHHh
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGV-------NPQDAAPY----VLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
..|..+..++...|++++|+..+++.+++ +|++..+| .....++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37777777788888888888888887777 88888888 8888889999999999888887754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=72.76 Aligned_cols=149 Identities=7% Similarity=0.031 Sum_probs=78.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
...+..+...|.+.|++++|...|++... ++.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677889999999999999999998542 2221 1223344444433221 135677777888
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHH
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSA-CKTHKSTDMAG 261 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~~~~~~a~ 261 (430)
+.|++++|...++...+. .+.+...|..+..+|...|++++|...|++. ...|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888753 1235677888888888888888888888887 55554 3444444444 34456677788
Q ss_pred HHHHHHhcCCCCC
Q 043370 262 RIAEEILGVNPQD 274 (430)
Q Consensus 262 ~~~~~~~~~~p~~ 274 (430)
..++++++..|.+
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 8888888887754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=64.57 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...|..+..++...|+++.|...++++++++|.++.+|..+..+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345666666677777777777777777777777777777777777777777777777776544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.8e-05 Score=63.86 Aligned_cols=67 Identities=18% Similarity=0.066 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...+++.++++|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 456777888888888888888888776 3344 577888888889999999999999999999999766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.4e-06 Score=63.46 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=39.5
Q ss_pred cCcHHHHHHHHHHHhhhcC--CccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 043370 186 CGLKEKGMEFFDLMVKKYR--RKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 261 (430)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|...|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555432 1 1112344445555555555555555555544 2222 2344444444455555555555
Q ss_pred HHHHHHhcCCCCC
Q 043370 262 RIAEEILGVNPQD 274 (430)
Q Consensus 262 ~~~~~~~~~~p~~ 274 (430)
..+++.++..|.+
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 5555555544433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.8e-06 Score=62.78 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=57.7
Q ss_pred hcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 150 FHGKGEEAINLFEQMEQKE--FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
..|++++|+..|++..+.+ -+.+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 3577888888888887753 1223456777777888888888888888888754 12346677778888888888888
Q ss_pred HHHHHHhC
Q 043370 228 AAALIRNM 235 (430)
Q Consensus 228 A~~~~~~m 235 (430)
|...+++.
T Consensus 80 A~~~~~~a 87 (117)
T 3k9i_A 80 GVELLLKI 87 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887766
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0004 Score=68.19 Aligned_cols=167 Identities=8% Similarity=0.036 Sum_probs=110.7
Q ss_pred HHHHHHHhccC---CCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC--c
Q 043370 124 DDSVKTFLECE---YSDVVLWSSMIAAYGFHGK----------GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG--L 188 (430)
Q Consensus 124 ~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 188 (430)
++|.+.++.+. +.+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 34455554433 2344455554444444444 677777777776653 334556666666666666 5
Q ss_pred HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 043370 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG-YLDEAAALIRNM-PVKA-NAIIWKTLLSACKTH----------- 254 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----------- 254 (430)
++++.+.++++.+. -+-+...|+.-...+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 67777777777654 1235566666666666677 777777777776 4444 566777666665542
Q ss_pred ---CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH
Q 043370 255 ---KSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 255 ---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999988887554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.96 E-value=7.3e-05 Score=71.54 Aligned_cols=144 Identities=6% Similarity=-0.059 Sum_probs=108.6
Q ss_pred CChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---------------HHHHHHHHHH
Q 043370 20 GSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD---------------KITFVSVISS 81 (430)
Q Consensus 20 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------~~t~~~ll~~ 81 (430)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 445556656654432 356788888889999999999999999888742 222 4788888888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+.+.|++++|...++++++... .+...+..+..+|.+.|++++|...|++.. ..+...|..+...+.+.++.+++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 378888899999999999999999998764 336678888888888888888776
Q ss_pred H-HHHHHH
Q 043370 159 N-LFEQME 165 (430)
Q Consensus 159 ~-~~~~m~ 165 (430)
+ ++..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 455554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.93 E-value=7.5e-05 Score=69.26 Aligned_cols=84 Identities=4% Similarity=0.009 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 043370 73 ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYG 149 (430)
Q Consensus 73 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~ 149 (430)
..|..+..++.+.|++++|...++++++... .+..++..+..+|.+.|++++|.+.|++.. ..+...+..+...+.
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4444555555555555555555555554432 244555555555555555555555555432 224444444444444
Q ss_pred hcCChHHH
Q 043370 150 FHGKGEEA 157 (430)
Q Consensus 150 ~~g~~~~A 157 (430)
..++.+++
T Consensus 353 ~~~~~~~a 360 (370)
T 1ihg_A 353 KIKAQKDK 360 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.8e-05 Score=62.94 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM--------PVKAN-AIIW----KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|++.++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555556666666666665555544 33775 5677 888889999999999999999999999876655
Q ss_pred HH
Q 043370 278 YV 279 (430)
Q Consensus 278 ~~ 279 (430)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.5e-05 Score=71.29 Aligned_cols=124 Identities=11% Similarity=0.054 Sum_probs=97.7
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcC--C---cc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYR--R---KP-RLEHYTCVVDLLGRCGYLDEAAALIRNM---------PVKAN-AIIWK 245 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 245 (430)
.+...|++++|..++++..+... + .| ...+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999999888765321 1 22 3467899999999999999999988876 34454 45688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhc-----CCCCCC---hhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 246 TLLSACKTHKSTDMAGRIAEEILG-----VNPQDA---APYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 246 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
.|...|...|++++|+.++++.++ ++|+.+ .+...|..++...+++++|+.++..+++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999863 456544 445678888999999999999999998744
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.1e-05 Score=56.36 Aligned_cols=92 Identities=12% Similarity=-0.016 Sum_probs=70.7
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC------ChhHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD------AAPYV 279 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 279 (430)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...+++.++++|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777778888888888888888876 3334 57778888888999999999999999999999977 66677
Q ss_pred HHHHHHHhccchhHHHHHHH
Q 043370 280 LLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 280 ~l~~~~~~~g~~~~a~~~~~ 299 (430)
.+..++...|+++.|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777666654443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.2e-05 Score=57.52 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc------HhH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD------VGV 109 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~ 109 (430)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.++.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 34566677777777777888887777777653 345666777777777777777777777777765322 2 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
+..+..++...|+.+.|...|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 5556666666666665555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=51.97 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=61.5
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...+++..+.+|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777777888888888877766 2233 56677778888888899999999999998888888888888877776
Q ss_pred hcc
Q 043370 287 SAK 289 (430)
Q Consensus 287 ~~g 289 (430)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00018 Score=52.62 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+...|..+...+...|++++|...++++++++|.++.+|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888899999999999999999999998899999999999999999999999887754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.7e-05 Score=55.52 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=51.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 228 AAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 228 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|...|++. ...| +...|..+...+...|+++.|...+++.++.+|.+..+|..+..+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444443 3333 4566666777777777777777777777777777777777777777777777777777776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0011 Score=51.75 Aligned_cols=109 Identities=8% Similarity=-0.082 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSV 127 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 127 (430)
++++|++.|++..+.| .|+.. +...+...+..++|.+.|++..+.| +...+..|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4667777777776665 33333 4445555556666777777666654 45566666666666 56666666
Q ss_pred HHHhccC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 043370 128 KTFLECE-YSDVVLWSSMIAAYGF----HGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 128 ~~~~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 168 (430)
+.|+... ..++.++..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666543 2355556666666655 556666666666665554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00083 Score=47.47 Aligned_cols=82 Identities=7% Similarity=0.088 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+... .+..++..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4566667777777777777777777777653 33556677777777777777777777777776542 255566666655
Q ss_pred HHhc
Q 043370 117 YSRC 120 (430)
Q Consensus 117 ~~~~ 120 (430)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00037 Score=66.91 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=92.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCC---CCC---C-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc----C-CccC-HhHHH
Q 043370 147 AYGFHGKGEEAINLFEQMEQKE---FEA---N-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY----R-RKPR-LEHYT 213 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g---~~p---~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~ 213 (430)
.+...|++++|+.++++.++.. +.| + ..+++.|..+|...|++++|..++++....+ | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999998876531 223 2 3578899999999999999999998876531 2 2233 46789
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 214 CVVDLLGRCGYLDEAAALIRNM---------PVKANAI-IWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
.|...|...|++++|+.++++. +..|+.. +.+.+-.++...+.++.|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 3345443 344555567788899999999998863
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0075 Score=59.11 Aligned_cols=168 Identities=11% Similarity=0.021 Sum_probs=99.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT----------LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
..++|++.++++.+.+ +-+...|+.--.++...++ ++++.+.++.+.+...+ +..+|+--...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3456778887777653 2234446555555555555 67777777777776544 6666766666666667
Q ss_pred --CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc---------
Q 043370 122 --CLDDSVKTFLECE---YSDVVLWSSMIAAYGFHG-KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC--------- 186 (430)
Q Consensus 122 --~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------- 186 (430)
+++++.+.++.+. .++..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 5577777776654 345666766666666666 6677777777766653 33455555544444332
Q ss_pred -----CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 187 -----GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 187 -----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
+.++++.+.+++.... .+-+...|.-+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 3455666666655532 12244555555555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0008 Score=50.33 Aligned_cols=76 Identities=7% Similarity=-0.019 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhc
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 132 (430)
+|+..|++..+.. +.+...+..+...+...|++++|...+++.++... .+...+..+..+|.+.|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555555432 33445555555555566666666666666555432 2445555555555556666665555554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=8.2e-05 Score=59.07 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=61.0
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 221 RCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKS----------TDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
|.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|++.++++|++..+|..+..+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555544 2233 44455555555554443 56999999999999999999999999999987
Q ss_pred c-----------chhHHHHHHHHHHhC
Q 043370 289 K-----------RWQGVSEFREAMRER 304 (430)
Q Consensus 289 g-----------~~~~a~~~~~~m~~~ 304 (430)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999988764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00073 Score=49.30 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=34.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555566666666665555542 2234455555555555566666655555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0099 Score=60.90 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
...+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555554442 3445555555555555555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0032 Score=49.00 Aligned_cols=111 Identities=13% Similarity=-0.035 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh----cCCHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR----CGYLDE 227 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 227 (430)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46777777777777776 33433 555666666777777777777653 245556666666665 566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCC
Q 043370 228 AAALIRNMPVKANAIIWKTLLSACKT----HKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 228 A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 271 (430)
|.+.|++.-...++..+..|-..|.. .++.++|...+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665222345555555555555 566666666666665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00043 Score=65.34 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=86.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----CCCC---CChh
Q 043370 216 VDLLGRCGYLDEAAALIRNM---------PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILG-----VNPQ---DAAP 277 (430)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~ 277 (430)
+.-+.+.|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ +.|. ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999888765 11232 45788888899999999999999998862 3343 4457
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMK 349 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 349 (430)
++.|..+|...|++++|+.++++..+--. ..-...||...+++..|++...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988754211 1122579999999888888877775
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00057 Score=54.20 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=55.3
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh----------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL----------GQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++.++..+. +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445556666666655543 33455555555555555443 2444444444444322 3344444444444
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
..|.+ .|+.. ...|++++|++.|++..+. .|+...|...+..
T Consensus 92 ~lg~l-----------~P~~~---------~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFL-----------TPDET---------EAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHH-----------CCCHH---------HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred Hhccc-----------Ccchh---------hhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 33321 11100 0015788888888888774 6776666555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0018 Score=46.49 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 239 ANAIIWKTLLSACKTHKS---TDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
+|+..+..+..++...++ .++|..++++.++.+|.++.+...+...+...|++++|...|+.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 366777777777654444 68999999999999999999999999999999999999999999987653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.052 Score=55.52 Aligned_cols=168 Identities=11% Similarity=-0.002 Sum_probs=102.6
Q ss_pred HHHHcCChHHHHH-HHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043370 15 MYMKSGSLVEGEK-VIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQ 93 (430)
Q Consensus 15 ~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 93 (430)
.....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+. ... -+......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~~---~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD---------QDQ---KFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC---------HHH---HHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC---------cch---heehhhhcCCHHHHHH
Confidence 3445788999988 7655551 22337778888888999988876532 111 1223456789999988
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043370 94 IHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173 (430)
Q Consensus 94 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 173 (430)
+.+.+ .+...|..|..++.+.|+++.|+++|..+.. |..+...|...|+.+...++-
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~------------ 730 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLA------------ 730 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHH------------
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHH------------
Confidence 75432 3678899999999999999999888877543 233333444455554444333
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (430)
......|+.+.|...+-+.- -+...+++|.+.+++++|..+-+..+
T Consensus 731 -------~~a~~~~~~~~A~~~~~~~g----------~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 731 -------KDAETTGKFNLAFNAYWIAG----------DIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp -------HHHHHTTCHHHHHHHHHHHT----------CHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred -------HHHHHcCchHHHHHHHHHcC----------CHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 33333444444444433321 01223445555677777777777654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.036 Score=50.35 Aligned_cols=136 Identities=13% Similarity=-0.013 Sum_probs=72.1
Q ss_pred CCCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhh----c----CcHHHHHHHHHHHh
Q 043370 135 YSDVVLWSSMIAAYGF--HG---KGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSH----C----GLKEKGMEFFDLMV 200 (430)
Q Consensus 135 ~~d~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----~----g~~~~a~~~~~~~~ 200 (430)
..+..+|...+.+... .+ +..+|+.+|++..+. .|+ ...+..+..++.. . .........+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3466677766655432 22 347888888888875 454 3444443333321 0 00111111111111
Q ss_pred hhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 201 KKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 201 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.....+.+..+|..+.-.+...|++++|...++++ ..+|+...|..+-..+.-.|+.++|...++++..++|
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 11122335556666655555567777777766666 3345655555555556666777777777777776666
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0061 Score=43.80 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 215 VVDLLGRCGYLDEAAALIRNM-PVKA-NAI-IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
....+.+.|++++|...|++. ...| +.. .|..+...+...|++++|...++++++++|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566778888888877776 3334 455 777777778888888888888888888888777665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.024 Score=51.49 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=43.8
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH
Q 043370 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY 212 (430)
Q Consensus 136 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 212 (430)
.+...|.++...+...|++++|+..+++....+ |+...|..+...+.-.|+.++|.+.+++... +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 455666666555555667777777777666653 5655565556666666777777766666653 34554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0024 Score=60.20 Aligned_cols=83 Identities=7% Similarity=-0.025 Sum_probs=64.2
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----CCCC---CChhHHHHH
Q 043370 221 RCGYLDEAAALIRNM---------PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILG-----VNPQ---DAAPYVLLS 282 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~~~~l~ 282 (430)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+ ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888887754 23343 45788888999999999999999998862 3443 445788899
Q ss_pred HHHHhccchhHHHHHHHHHHh
Q 043370 283 NIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.+|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999887754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.018 Score=54.18 Aligned_cols=101 Identities=9% Similarity=-0.045 Sum_probs=76.0
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcC--Ccc----CHhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-H
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYR--RKP----RLEHYTCVVDLLGRCGYLDEAAALIRNM---------PVKAN-A 241 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~ 241 (430)
..+..+.+.|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 345556678899999999988875321 122 2467888999999999999999988866 34454 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHh-----cCCCCCChhH
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEIL-----GVNPQDAAPY 278 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~p~~~~~~ 278 (430)
.+++.|...|...|++++|+.++++++ .++|+.+.+-
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 568888889999999999999999986 3467555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=42.24 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=38.5
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043370 44 IAGKAQNGLAEDVLDQYNLMRMVGFRPDKI-TFVSVISSCSELATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 44 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 102 (430)
...+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.+++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445666777777777777776653 33445 66666667777777777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.009 Score=56.27 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=70.7
Q ss_pred hcCcHHHHHHHHHHHhhhcC--Cc---c-CHhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 043370 185 HCGLKEKGMEFFDLMVKKYR--RK---P-RLEHYTCVVDLLGRCGYLDEAAALIRNM---------PVKAN-AIIWKTLL 248 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 248 (430)
+.|++++|..++++..+... +. | ...+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999998888765311 22 2 2467899999999999999999998876 34455 45688899
Q ss_pred HHHHhcCChhHHHHHHHHHhc-----CCCCCChh
Q 043370 249 SACKTHKSTDMAGRIAEEILG-----VNPQDAAP 277 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 277 (430)
..|...|++++|+.+++++++ ++|+.+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999863 46655443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.24 Score=37.50 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=97.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHH
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 229 (430)
-.|..++..++..+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 357777777777777654 24455666665555555555566666666443322 2456666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 230 ALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 230 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
..+-.++. +.......++.....|+-+.-.++...+..-+|.++.....+..+|.+.|+..+|.+++.+.=++|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66655542 44556667788899999999999999977666668999999999999999999999999999888873
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.033 Score=39.78 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=47.5
Q ss_pred cCHhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 207 PRLEHYTCVVDLLGRCGY---LDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 207 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|+++.|...|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456666666666654443 67788877776 4445 4566666666788888888888888888888885
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.036 Score=43.38 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCC-C-CCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 258 DMAGRIAEEILGVN-P-QDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 258 ~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+++..+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+
T Consensus 52 ~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 52 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34444444444433 3 22334444444445555555555554444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.038 Score=40.29 Aligned_cols=71 Identities=10% Similarity=0.006 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-----P----VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVL 280 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 280 (430)
.-+..|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++.++.|.++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33444555555555555555555543 0 11346677888888999999999999999999999977655433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.32 Score=39.02 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=64.2
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
...++|+++.|.++-+++ .+...|..|.......|+.+-|.+.|.+... |..+.-.|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344566666666665544 3455666666666666666666666665432 22233334444555443333
Q ss_pred HHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 2222221 1 123333445556677777776666653332211 123356666666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.82 E-value=3.4e-06 Score=78.12 Aligned_cols=261 Identities=11% Similarity=0.121 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
.+|+.|..++.+.+++.+|++-|=+. .|+..|..+|.+..+.|++++-+..+.-.++.. .++..=+.|+-+|++.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence 45556666666666666665554332 233445566666666666666666554443321 12222335555666666
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
++.+-.+++ -.||..-...+.+-+...|.++.|.-+|..+.. |.-|...+.+.|++++|.+.-++
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK--- 195 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK--- 195 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT---
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh---
Confidence 554333322 123444444555666666666666555555432 34455556666777666654332
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHH
Q 043370 167 KEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV-KANAIIW 244 (430)
Q Consensus 167 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~ 244 (430)
.-+..||-.+-.+|...+.+..|.-.--.++- .......++..|-+.|.+++-..+++.. +. +.....|
T Consensus 196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmF 266 (624)
T 3lvg_A 196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 266 (624)
T ss_dssp ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHH
T ss_pred ---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHH
Confidence 23566788888888888887776555444332 1223344677788889998888888765 43 3577778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHh-cCC-CC------CChhHHHHHHHHHhccchhHHHH
Q 043370 245 KTLLSACKTHKSTDMAGRIAEEIL-GVN-PQ------DAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 245 ~~ll~~~~~~~~~~~a~~~~~~~~-~~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
+-|.-.|++.. +++-.+.++... +++ |. ....|.-++-.|.+-..|+.|..
T Consensus 267 TELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 267 TELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 88877777764 444444433322 333 31 45677778888888888877654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.035 Score=43.48 Aligned_cols=87 Identities=14% Similarity=-0.010 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG---YLDEAAALIRNM-PVK-A--NAIIWKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~ 262 (430)
..+.+.|.+..+. + .++..+...+..++++++ +++++..++++. ... | +...+-.|--++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444332 2 245555555555666655 444566555554 112 3 23334445556899999999999
Q ss_pred HHHHHhcCCCCCChhH
Q 043370 263 IAEEILGVNPQDAAPY 278 (430)
Q Consensus 263 ~~~~~~~~~p~~~~~~ 278 (430)
.++.+++.+|.|..+.
T Consensus 93 y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCCCCHHHH
Confidence 9999999999765543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=2 Score=42.21 Aligned_cols=249 Identities=10% Similarity=0.024 Sum_probs=123.5
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLG 89 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 89 (430)
+..+..+.+.+++.....++.. +..+...--....+....|+..+|......+-..| .........++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4445666777788888877666 43344444445666777788777777766666555 233344455555555444332
Q ss_pred H--HHHHHHHHHHcC-----------CCCcH-hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhH---HHHHHHHHHhcC
Q 043370 90 Q--GQQIHAEVVKAG-----------ASLDV-GVISSLISMYSRCGCLDDSVKTFLECEYSDVVL---WSSMIAAYGFHG 152 (430)
Q Consensus 90 ~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~---~~~li~~~~~~g 152 (430)
. ..+=+..+...| ++++. .....++..+.+-..+ ....... .++... +..-+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 2 111111222221 11111 1112222222221111 1111111 111111 1111222333 3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFV----SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 228 (430)
+.+.|..+|....+.. ..+..... .+.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6788888888876543 22332222 2222334445344555566654432 23333334444445577889999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 229 AALIRNMPVKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 229 ~~~~~~m~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
...|+.|+..+ .....--+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998885443 222223344567778888888888888864
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.048 Score=47.60 Aligned_cols=83 Identities=10% Similarity=0.128 Sum_probs=63.9
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhcCCCC-CChhHHHHHHHHHhc-cchhH
Q 043370 225 LDEAAALIRNM-PVKAN---AIIWKTLLSACKT-----HKSTDMAGRIAEEILGVNPQ-DAAPYVLLSNIHASA-KRWQG 293 (430)
Q Consensus 225 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~ 293 (430)
...|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++.++++|+ +..+++.....++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555555555 45555 5677778777877 48999999999999999986 488888888888884 88999
Q ss_pred HHHHHHHHHhCCCC
Q 043370 294 VSEFREAMRERNVK 307 (430)
Q Consensus 294 a~~~~~~m~~~g~~ 307 (430)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999888776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.85 Score=39.82 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=68.1
Q ss_pred hcCCHHHHHHHHhccCCCCH--hHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhh
Q 043370 119 RCGCLDDSVKTFLECEYSDV--VLWSSMIAA-YGFH--GK------GEEAINLFEQMEQKEFEAN---DVTFVSLLYACS 184 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~d~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 184 (430)
+.|+..+-.+.+.++.+.|+ ..|..++.+ +... |+ ...|..++++..+. .|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 34444555555666654444 456655543 3332 32 45666666766664 455 456777777777
Q ss_pred hc-----CcHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 043370 185 HC-----GLKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLLGRC-GYLDEAAALIRNM 235 (430)
Q Consensus 185 ~~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m 235 (430)
.. |+.++|.+.|++..+- .| +..++....+.+++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 63 7778888887777643 45 256666677777764 7777777777765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.99 E-value=1.1 Score=35.89 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=86.9
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFE 162 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 162 (430)
.+.|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|.-.|+.+.-.++-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 4568888888887665 3678899999999999999999999988764 3444555666787777666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043370 163 QMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236 (430)
Q Consensus 163 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (430)
.....|- ++.....+...|+++++.++|.+.- --|.... .....|..+.|.++.++++
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG----SLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 5555541 4445556667899999999887652 2222111 1122467778888888775
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=1.3 Score=33.68 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=60.3
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHH
Q 043370 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 198 (430)
.||++......+-.+.. +....+..+......|+-++-.+++..+... .+|++.....+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555554444444322 3445566777888888888888888886543 477888888888999999999999999888
Q ss_pred HhhhcCCc
Q 043370 199 MVKKYRRK 206 (430)
Q Consensus 199 ~~~~~~~~ 206 (430)
..+. |++
T Consensus 151 AC~k-G~k 157 (172)
T 1wy6_A 151 ACKK-GEK 157 (172)
T ss_dssp HHHT-TCH
T ss_pred HHHh-hhH
Confidence 8776 654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.54 Score=33.93 Aligned_cols=63 Identities=3% Similarity=-0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVG------FRPDKITFVSVISSCSELATLGQGQQIHAEVVKA 101 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 101 (430)
-+-.|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455556666666666666666654420 0123444555555666666666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.61 Score=35.02 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=43.0
Q ss_pred cCHhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 207 PRLEHYTCVVDLLGRCGYLDE---AAALIRNM-PVK-A-NA-IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 207 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p-~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
|+..+-..+..++.++....+ +..+++.. ... | +. ...-.|.-++.+.|+++.|.+.++.+++.+|.|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 455555555555555555444 55555554 212 3 11 1222344468888899999999999988888765544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.47 Score=35.63 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhcCChhH---HHHHHHHHhcCC-C-CCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCcee
Q 043370 239 ANAIIWKTLLSACKTHKSTDM---AGRIAEEILGVN-P-QDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVS 313 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 313 (430)
|+..+--.+..++.+..+... ++.+++.+...+ | ........|.-++.+.|++++|.+..+.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--------- 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------
Confidence 566665566667777776666 999999998776 5 35566778899999999999999999988653
Q ss_pred EEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCc
Q 043370 314 WLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGY 353 (430)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 353 (430)
.|...++......+.++|.+.|+
T Consensus 104 -----------------eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 104 -----------------EPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHC--
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 34445555444556667777663
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=93.53 E-value=1.2 Score=31.50 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=64.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
....++|..|-+.+...+. ...+--+-+......|++++|..+.+....||.+.|-++-. .+.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3457888888888777653 33333344566788999999999999999999999988754 4567778888777788
Q ss_pred HHCCCCCCHHHHH
Q 043370 165 EQKEFEANDVTFV 177 (430)
Q Consensus 165 ~~~g~~p~~~t~~ 177 (430)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7776 55555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.35 Score=48.50 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHHHHhhhcCc-HHHHHHHHHHHhhhcCCccCHhH--HHHHHHHHhhcCC-HHHHHHHHHhC---------CCCC-CHH
Q 043370 177 VSLLYACSHCGL-KEKGMEFFDLMVKKYRRKPRLEH--YTCVVDLLGRCGY-LDEAAALIRNM---------PVKA-NAI 242 (430)
Q Consensus 177 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~-~~~A~~~~~~m---------~~~p-~~~ 242 (430)
..++..+...++ .+.|..+|+++.+. .|.... ...++..+.+.+. --+|.+++.+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 345555555555 58888999988764 343332 2234444433332 11333333221 1111 111
Q ss_pred ---HH---HHHHH----HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 243 ---IW---KTLLS----ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 243 ---~~---~~ll~----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.. ..|+. -|...|+++.|+.+.++....-|.+-.+|..|..+|...|+|+.|.-.+..+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 00 11222 2677899999999999999999999999999999999999999999999987
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.30 E-value=1.1 Score=31.62 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
...++|..|-+.+...+. ...+--+-+......|++++|..+.+....||.+.|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456888888888777653 33333344566788999999999999999999999988744 46788888888887888
Q ss_pred HCCCCCCHHHHHH
Q 043370 166 QKEFEANDVTFVS 178 (430)
Q Consensus 166 ~~g~~p~~~t~~~ 178 (430)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.02 E-value=4.5 Score=35.76 Aligned_cols=143 Identities=8% Similarity=0.038 Sum_probs=82.8
Q ss_pred HHHHHCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHH----HHcC--CCCcHhHHHHH
Q 043370 45 AGKAQNGLAEDVLDQ----YNLMRMVGFRPDKITFVSVISSCSELATLG-QGQQIHAEV----VKAG--ASLDVGVISSL 113 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~l 113 (430)
..+.+.|+...|-++ .+.+.+.++++|......++..+.....-+ .=.++.+.+ .+.| ...++..+..+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 345667777666554 444556678888888887777765533211 112333333 3333 22377888888
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH---GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE 190 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 190 (430)
...|.+.|++.+|+..|---...|...+..|+.-+... |...++- ...-.+++ -|.-.+++.
T Consensus 141 a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~RaVL-~yL~l~n~~ 205 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRLVF-NYLFISNIS 205 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHHHH-HHHHTTBHH
T ss_pred HHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHHHH-HHHHhcCHH
Confidence 99999999999988888633323455555555444433 3333321 11111222 344567888
Q ss_pred HHHHHHHHHhhh
Q 043370 191 KGMEFFDLMVKK 202 (430)
Q Consensus 191 ~a~~~~~~~~~~ 202 (430)
.|..+++...+.
T Consensus 206 ~A~~~~~~f~~~ 217 (312)
T 2wpv_A 206 FAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.96 E-value=1.2 Score=34.41 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCC
Q 043370 134 EYSDVVLWSSMIAAYGFHGKG------EEAINLFEQMEQKEFEAN 172 (430)
Q Consensus 134 ~~~d~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~ 172 (430)
...|..+|-..+...-+.|++ ++..++|++.... ++|+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 345777777777777777777 7777777777665 5664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.89 E-value=2.4 Score=32.81 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHCCCh------hHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHhccCChHHHHHHHHHHHH
Q 043370 34 IRNVIAWITLIAGKAQNGLA------EDVLDQYNLMRMVGFRPDKI----TFVSVIS---SCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~~~~ 100 (430)
..|..+|=..+...-+.|++ ++.+++|++.... ++|+.. .|.-+.- .+...++.+.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777777777777777877 7777777777654 566421 1111110 01122566666666666655
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 043370 101 AGASLDVGVISSLISMYSRCGCLDDSVKTFL 131 (430)
Q Consensus 101 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 131 (430)
.+ +--..+|......-.+.|++..|++++.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 42 2124444444444445555555555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.16 E-value=1.9e-06 Score=79.80 Aligned_cols=232 Identities=13% Similarity=0.088 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
....|..|..++...++..+|++.|-+. -|+..|..++.++.+.|.++.-...+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3457999999999999999998776322 256678899999999999999999887666543 25566678999
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
+|++.+++.+-++++. .|++.-...+..-+...|.++.|.-+|..+.. |..|...+.+.|++..|.+.
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999776444433 35555556677778888888888877765432 33455566777777766543
Q ss_pred HHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
-+ -.-++.+|-.+-.+|...+.+.-|.-.--.+-+.||. ...++.-|-..|.+++-+.+++..++++.-..
T Consensus 193 Ar-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglErAHm 263 (624)
T 3lvg_A 193 AR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHM 263 (624)
T ss_dssp TT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred HH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence 22 2346778888888999888887665443332122221 12345568889999999999999988886678
Q ss_pred hhHHHHHHHHHhccchhHHHHH
Q 043370 276 APYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
..|.-|.-.|++- +.++..+-
T Consensus 264 GmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 264 GMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp HHHHHHHHHHHSS-CTTHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHH
Confidence 8888888888766 34443333
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.76 E-value=6.8 Score=34.91 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=84.7
Q ss_pred HHHHHCCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHH----HHcC--CCCcHhHHHHH
Q 043370 45 AGKAQNGLAEDVLDQY----NLMRMVGFRPDKITFVSVISSCSELATLG-QGQQIHAEV----VKAG--ASLDVGVISSL 113 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~l 113 (430)
..+.+.|+...|-++- +-+.+.++++|..+...++..+.....-+ .=..+.+.+ .+.| ..-|+.....+
T Consensus 63 ~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~i 142 (336)
T 3lpz_A 63 QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVV 142 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 3466677776655554 44556778889888888888777655321 122333333 3333 34478888999
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
...|.+.+++.+|+..|---..+.+..+..|+.-+...+... .+|...-.+++ -|.-.+++..|.
T Consensus 143 g~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~ 207 (336)
T 3lpz_A 143 GTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAAN 207 (336)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHH
T ss_pred HHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHH
Confidence 999999999999999885322333456655554444433221 12222222333 345567788887
Q ss_pred HHHHHHhh
Q 043370 194 EFFDLMVK 201 (430)
Q Consensus 194 ~~~~~~~~ 201 (430)
.+++...+
T Consensus 208 ~~~~~f~~ 215 (336)
T 3lpz_A 208 TAYRIFTS 215 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.35 Score=44.66 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh-----CCCCCCCce
Q 043370 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE-----RNVKKEPGV 312 (430)
Q Consensus 245 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 312 (430)
..++.++...|+.+.+...++.+...+|-+...|..|+.+|...|+..+|.+.|+..++ .|+.|.+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556677788888888888888888887778888888888888888888888777643 477766543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.54 E-value=1.3 Score=31.60 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
|.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.+....+ +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 5667888888888888999999999999999999999999999999976533 33456777664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.17 E-value=6.8 Score=41.75 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
...++..+.+.+..+.|.++....+. +..+--.+..+|...|++++|.+.|.+.- .|+.++.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhh
Confidence 34566667778888888877665554 44444456777889999999999997753 2222211000 000
Q ss_pred HHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHhc----cCCCC----HhHHHHHHHHHHhcCChHHHH
Q 043370 89 GQGQQIHAEVVKAG--ASLDVGVISSLISMYSRCGCLDDSVKTFLE----CEYSD----VVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 89 ~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~d----~~~~~~li~~~~~~g~~~~A~ 158 (430)
.. ...+.... ...-..-|.-++..+.+.|.++.+.+.-.. ....+ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 00111110 011123344555666666665555443321 22222 125788888888889999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 191 (430)
..+-.+.....+ ...+..|+...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 888877654332 3456666666666665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.97 E-value=2.1 Score=42.98 Aligned_cols=124 Identities=6% Similarity=-0.096 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCC-hHHHHHHHccCCCCC--HHH--HHHHHHHHHHCC-ChhHHHHHHHHHHHC------CCCCCHH----
Q 043370 10 SSLAHMYMKSGS-LVEGEKVIRLMPIRN--VIA--WITLIAGKAQNG-LAEDVLDQYNLMRMV------GFRPDKI---- 73 (430)
Q Consensus 10 ~~li~~~~~~g~-~~~A~~~f~~m~~~~--~~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~---- 73 (430)
..|+..+...++ .+.|..+|+++.+.+ ..+ ...++..+.+.+ +--+|++++.+.++. ..++...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555666 577999998876432 222 223333333333 233566666555431 1222211
Q ss_pred -------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 74 -------TFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 74 -------t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
....-...|...|+++.|.++-++.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112334566899999999999998874 4478999999999999999999999998886
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.07 E-value=5.9 Score=40.70 Aligned_cols=152 Identities=9% Similarity=0.011 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHhhhc
Q 043370 113 LISMYSRCGCLDDSVKTFLECEY--SD-VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV---SLLYACSHC 186 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~~--~d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~ 186 (430)
|...|...|+-+....++..+.+ .+ +.-.-++.-++...|+.+.+..+.+.+.... .|. .-|. ++..+|+..
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGT 573 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTS
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCC
Confidence 33444455665555555543321 11 1122222233445566666666666665531 111 1222 233456666
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-hHHHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKST-DMAGRI 263 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~-~~a~~~ 263 (430)
|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.++++.+ ...|.+..-.++.-+....|+. ..+...
T Consensus 574 Gn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 7766666666666543 2223332222222333345555555555544 1223333222232233333332 455556
Q ss_pred HHHHh
Q 043370 264 AEEIL 268 (430)
Q Consensus 264 ~~~~~ 268 (430)
+..+.
T Consensus 652 L~~L~ 656 (963)
T 4ady_A 652 LDPLT 656 (963)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=2.4 Score=39.02 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=25.4
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 043370 44 IAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEV 98 (430)
Q Consensus 44 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 98 (430)
+..+...|++.+|+..+..+.... +-+...+..++.++.+.|+..+|.+.|+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444455555554444444332 334444555555555555555555444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.79 E-value=1.8 Score=30.69 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=23.1
Q ss_pred HHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 043370 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG 67 (430)
Q Consensus 16 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 67 (430)
+...|++++|..+.+....||...|-+|-. .+.|.-+++..-+.++-..|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 334455555555555555555555544433 24444444444444444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.71 E-value=5.3 Score=37.49 Aligned_cols=180 Identities=11% Similarity=0.096 Sum_probs=114.3
Q ss_pred CCHHHHHHHHhccC-----CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhh----hc
Q 043370 121 GCLDDSVKTFLECE-----YS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-KEFEANDVTFVSLLYACS----HC 186 (430)
Q Consensus 121 g~~~~A~~~~~~~~-----~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~----~~ 186 (430)
|++++|.+.+-.+. .. .......++..+...|+++...+.+..+.+ .|..+... ..++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcC
Confidence 67888888775443 12 345577788999999999999888876654 34333332 33443332 22
Q ss_pred CcHH--HHHHHHHHHhhhc--CCcc---CHhHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC---HHHHHHHHHHH
Q 043370 187 GLKE--KGMEFFDLMVKKY--RRKP---RLEHYTCVVDLLGRCGYLDEAAALIRNMP-----VKAN---AIIWKTLLSAC 251 (430)
Q Consensus 187 g~~~--~a~~~~~~~~~~~--~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~---~~~~~~ll~~~ 251 (430)
...+ .-..+.+...... .+-. .......|...|...|++.+|.+++.++. ..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222 2222222221100 1111 12344678899999999999999998872 1111 34566677779
Q ss_pred HhcCChhHHHHHHHHHh----cCCC-C--CChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 252 KTHKSTDMAGRIAEEIL----GVNP-Q--DAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~----~~~p-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
...+++..|..+++++. ...+ + ....|...+..+...++|.+|.+.|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999874 2222 1 12466788888999999999888777664
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.68 E-value=1.9 Score=30.57 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=21.6
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
+...|+|++|+.+.+.+. -||...|..+... +.|..+++..-+..+..
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 445555555555443332 4555555444332 34444444444433333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.14 E-value=26 Score=36.10 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=10.3
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 043370 147 AYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~ 166 (430)
+|+-.|+.....++++.+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 44455555444445555554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.96 E-value=2.3 Score=32.06 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
|.-+..+-++.+...++.|++....+.+.+|.+.+++..|.++|+.+..+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45577777888888889999999999999999999999999999999765 3344556777664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.94 E-value=14 Score=39.36 Aligned_cols=118 Identities=8% Similarity=0.008 Sum_probs=61.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------------------------CHhHHHHHHHHHHhcCChHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEYS--------------------------DVVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------d~~~~~~li~~~~~~g~~~~A~~ 159 (430)
+......+..+|..+|++++|...|.+.... -..-|..++..+-+.+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455666777777777777777654210 01124445556666666666666
Q ss_pred HHHHHHHCCCCCCH----HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHH
Q 043370 160 LFEQMEQKEFEAND----VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLD 226 (430)
Q Consensus 160 ~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 226 (430)
+-+...+..-+-+. ..|..+..++...|++++|...+-.+... . --......||..++..|+++
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChh
Confidence 55554443211111 13455566666666666666666555322 1 12344455555555554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.70 E-value=18 Score=33.80 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=113.1
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCcHh--HHHHHHHHHHhcCC
Q 043370 51 GLAEDVLDQYNLMRM-----VGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK-AGASLDVG--VISSLISMYSRCGC 122 (430)
Q Consensus 51 g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~--~~~~li~~~~~~g~ 122 (430)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+ +|..+... ..+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 567777776655543 22344566777888888888888888777666544 33322221 11222333333332
Q ss_pred HH--HHHHHHhccCC---C-------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhhh
Q 043370 123 LD--DSVKTFLECEY---S-------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK--EFEAN---DVTFVSLLYACSH 185 (430)
Q Consensus 123 ~~--~A~~~~~~~~~---~-------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~ 185 (430)
.+ .-..+.+.... . .......|...|...|++.+|.+++.++... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22333333321 1 1233456778888999999999999998643 22111 1355666778889
Q ss_pred cCcHHHHHHHHHHHhhhc---CCccC--HhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 186 CGLKEKGMEFFDLMVKKY---RRKPR--LEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.+++..|..++.++.... ...|+ ...+.+++..+...+++.+|...|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999988874311 11222 245778888888899999988877665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.41 E-value=3.3 Score=32.61 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNMPV 237 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (430)
.+.---+..+|.+.|++++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 34444456666677777777777776643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.40 E-value=3.2 Score=29.53 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++++-++.. ..+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45666667777777888888888888888888888888888766543 2223445655543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=87.35 E-value=10 Score=30.58 Aligned_cols=182 Identities=10% Similarity=-0.030 Sum_probs=110.5
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043370 25 GEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS 104 (430)
Q Consensus 25 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 104 (430)
-..+++.+..+|...-...+.++.+.+..+ +...+.++.. .+|...-...+.++...+..+....+. .+.. .
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d 87 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---D 87 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---C
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---C
Confidence 344555666677777777777777777643 3444444443 356666666677777777653333333 3332 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043370 105 LDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
++..+....+.+..+.|+.+....+.+.+..+|...-...+.++.+.++. ++...+..+.. .++..+-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 57777777778888888765555555555667776666677777777764 45555555554 356666667777777
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 223 (430)
+.|.. ++...+..+.++ ++...-...+.++.+.+
T Consensus 164 ~~~~~-~~~~~L~~~l~d----~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 164 EIGGE-RVRAAMEKLAET----GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHCSH-HHHHHHHHHHHH----CCHHHHHHHHHHHHHCC
T ss_pred HhCch-hHHHHHHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 77764 455556665543 45555555666665544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.17 E-value=8.4 Score=29.44 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=12.6
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
++.+.|+++.|.++.+.+++.+|.|
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3445555555555555555555533
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.09 E-value=7.5 Score=30.61 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=18.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
+..+..-+..+|.+.|+.++|+.+++.++
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 34444556666677777777777766665
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.73 E-value=19 Score=32.07 Aligned_cols=164 Identities=11% Similarity=0.041 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhh
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLF----EQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
++.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556677788899999998876542 23445566665555444 44556677888877777777665
Q ss_pred hcCc--------HHHHHHHHHHHhhhcC--CccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043370 185 HCGL--------KEKGMEFFDLMVKKYR--RKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTH 254 (430)
Q Consensus 185 ~~g~--------~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 254 (430)
.... +++|..+-.. +| ..-+......+...|.+.+++.+|+.-|- .+.++.+..+..++-.+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~----~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKK----FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHH----HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHh
Confidence 5443 1222222222 13 23367778889999999999999998874 34444446666555554444
Q ss_pred CChhHHHHHHHHHhcCCCCCChhHH-HHHHHHHhccchhHHHHHHHHHHh
Q 043370 255 KSTDMAGRIAEEILGVNPQDAAPYV-LLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 255 ~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+... ....|. ..+--|...++...|..+++...+
T Consensus 181 ~~~~---------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 181 DESH---------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp SCGG---------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCc---------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3322 222222 234446667888888887776654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=85.63 E-value=13 Score=30.18 Aligned_cols=188 Identities=11% Similarity=-0.033 Sum_probs=122.6
Q ss_pred CChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 20 GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 20 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
++.+....+.+.+..+|...-...+..+.+.|.. ++...+.++.. .+|...-...+.++...++.+....+. .+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHH
Confidence 4444555566666778887777778888888774 44555555554 357777777788888877654333333 333
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 100 KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 100 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
+ .++..+....+.+..+.|+.+....+.+-+..++...-...+.++.+.|+. ++...+..+.. .++..+-...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHH
Confidence 2 467788888888888888865555555556677877777778888888765 45666666654 4677777777
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 180 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
+.++.+.+. .++...+..+.++ ++..+-...+.++.+.+.
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC---
T ss_pred HHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC
Confidence 788888776 4566666666554 455566666666665543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.83 E-value=23 Score=32.37 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCC---cHhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CCHhHH---
Q 043370 73 ITFVSVISSCSELATLGQGQQIHAEVVKA-GASL---DVGVISSLISMYSRCG-CLDDSVKTFLECEY---SDVVLW--- 141 (430)
Q Consensus 73 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~d~~~~--- 141 (430)
.....+...|.+.|+.++..+++...... +.-| .......|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666554321 0011 1233445566655532 22222222222210 111222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 142 ---SSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-----VTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 142 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
.-++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++..+...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13556666666777766666666543111121 123333445556666666666666554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=84.05 E-value=16 Score=29.71 Aligned_cols=185 Identities=13% Similarity=0.061 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 043370 54 EDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLEC 133 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 133 (430)
.+++..+-++++ .+|...-...+.++.+.+..+....+. .+.+ .++..+....+.+..+.|+.+....+.+.+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 445555555543 457777777777777777743333333 3333 357777777888888888765555555566
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH
Q 043370 134 EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213 (430)
Q Consensus 134 ~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 213 (430)
..+|...-...+.++.+.|+. ++...+.++.. .|+...-...+.++.+.|..+ +...+..+.+ .++..+-.
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~ 161 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQ 161 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHH
Confidence 677877777788888888875 35555555554 467766667777777777643 4444455543 35666777
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043370 214 CVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 255 (430)
..+.++++.+.. ++...+..+-..++..+-...+.++...+
T Consensus 162 ~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 162 SAADALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 778888888773 44444444411345555555566655444
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.31 E-value=18 Score=29.08 Aligned_cols=171 Identities=13% Similarity=0.057 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 043370 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYG 149 (430)
Q Consensus 70 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~ 149 (430)
||...-...+.++...+..+....+.+ +.+ .++..+....+....+.|+.+....+.+.+..++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555333323332 222 3455566666666666666544444445555666666666666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHH
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 229 (430)
+.|+.+ +...+.++.. .++...-...+.++.+.+.. ++...+..+.+ .++...-...+.++++.|..+ +.
T Consensus 102 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~~-~~ 171 (201)
T 3ltj_A 102 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSAADALGEIGGER-VR 171 (201)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCSHH-HH
T ss_pred HhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCchh-HH
Confidence 766643 4444444443 34555555556666665543 23333444433 245556666666677666533 44
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc
Q 043370 230 ALIRNMPVKANAIIWKTLLSACKTH 254 (430)
Q Consensus 230 ~~~~~m~~~p~~~~~~~ll~~~~~~ 254 (430)
..+..+-..++..+-...+.++.+.
T Consensus 172 ~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 172 AAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3333331124444444444444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.96 E-value=17 Score=31.18 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
..+.|+.++|+.....-++.. +-|...-..++..+|-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555566665555555542 3344444445555555666666655555544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.19 E-value=8.5 Score=29.05 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 56 VLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 56 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
..+-++.+...++.|++....+.+.+|-+.+++..|.++++-++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444555666666666666666666666666665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.25 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.64 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.33 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.27 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.17 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.41 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.05 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.97 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.8 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.34 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.15 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.75 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.47 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.63 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.87 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.8e-19 Score=166.65 Aligned_cols=288 Identities=13% Similarity=0.036 Sum_probs=237.1
Q ss_pred HHHHHHHcCChHHHHHHHccCC--C-CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMP--I-RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
+...+.+.|++++|.+.|+++. . .+...|..+...|.+.|++++|+..|++.++.. +-+..++..+..++...|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 4566778888888888888764 2 357788888888888888888888888887753 34567788888888888888
Q ss_pred HHHHHHHHHHHHcCCC----------------------------------------------------------------
Q 043370 89 GQGQQIHAEVVKAGAS---------------------------------------------------------------- 104 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~---------------------------------------------------------------- 104 (430)
++|...+....+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 8888877766554321
Q ss_pred ---CcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043370 105 ---LDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178 (430)
Q Consensus 105 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 178 (430)
.+...+..+...+...|+.++|...++... +.+..+|..+...+...|++++|+..|++....+ +.+...+..
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 242 (388)
T d1w3ba_ 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHH
Confidence 124456667778888999999999998653 4577889999999999999999999999998864 456777888
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKS 256 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~ 256 (430)
+...+.+.|++++|...|++..+. .+.+...+..+...|...|++++|.+.++.. ....+...+..+...+...|+
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC
Confidence 889999999999999999998763 2335678899999999999999999999887 223467888888899999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 257 TDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+++|...+++.++.+|+++.++..++.+|...|++++|...+++..+
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.1e-18 Score=161.23 Aligned_cols=282 Identities=12% Similarity=0.096 Sum_probs=241.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC------------
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR------------ 69 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------ 69 (430)
++.++..+...|.+.|++++|...|++.. ..+..+|..+...|.+.|++++|+..+....+....
T Consensus 32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1w3ba_ 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence 46788899999999999999999999864 346789999999999999999999999887553211
Q ss_pred -------------------------------------------------------CCHHHHHHHHHHHhccCChHHHHHH
Q 043370 70 -------------------------------------------------------PDKITFVSVISSCSELATLGQGQQI 94 (430)
Q Consensus 70 -------------------------------------------------------p~~~t~~~ll~~~~~~g~~~~a~~~ 94 (430)
-+...+..+...+...|+++.|...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 191 (388)
T d1w3ba_ 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHH
Confidence 1234455556677788999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 95 HAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 95 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
+...++..+ .+..++..+...|...|++++|...|+... ..+...|..+...+.+.|++++|+..|++..+.. +-
T Consensus 192 ~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~ 269 (388)
T d1w3ba_ 192 FEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PH 269 (388)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SS
T ss_pred HHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 999988753 377889999999999999999999998754 4577888899999999999999999999998863 33
Q ss_pred CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 043370 172 NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLS 249 (430)
Q Consensus 172 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 249 (430)
+..++..+...+...|+.++|.+.++..... .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+..
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 347 (388)
T d1w3ba_ 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5678889999999999999999999998764 4557788899999999999999999999986 6666 4678888999
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccc
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKR 290 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 290 (430)
.+...|++++|...++++++++|.++.+|..|+.+|.+.|+
T Consensus 348 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.6e-14 Score=128.88 Aligned_cols=249 Identities=9% Similarity=-0.017 Sum_probs=179.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
....+.+.|++++|+..|++.++.. +-+..+|..+..++...|++++|...+.++++..+. +...+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 4555777888888888888887763 335667777777788888888888888887776433 66777777788888888
Q ss_pred HHHHHHHHhccCC--CC----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh
Q 043370 123 LDDSVKTFLECEY--SD----------------VVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYAC 183 (430)
Q Consensus 123 ~~~A~~~~~~~~~--~d----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~ 183 (430)
+++|.+.++.... |+ .......+..+...+.+.+|.+.|.+..+.. -.++..++..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 8888877766431 10 1111122233445567888999988877643 234567788888889
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 261 (430)
...|++++|...+++.... .+-+...|..+...|.+.|++++|.+.|++. ...| +..+|..+..+|...|++++|+
T Consensus 183 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998764 2235678889999999999999999999887 4455 5778888999999999999999
Q ss_pred HHHHHHhcCCCCCCh-----------hHHHHHHHHHhccchhHHH
Q 043370 262 RIAEEILGVNPQDAA-----------PYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~a~ 295 (430)
..|++.++++|.+.. .|..+..++...|+.+.+.
T Consensus 261 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999987775543 3344556666666665544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.2e-14 Score=129.36 Aligned_cols=224 Identities=10% Similarity=0.010 Sum_probs=185.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC
Q 043370 77 SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGK 153 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~ 153 (430)
.....+.+.|++++|...|+.+++..+. +..++..+..+|...|++++|...|++.. +.+...|..+...|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 3455677899999999999999997543 78899999999999999999999998754 4578899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 154 GEEAINLFEQMEQKEFEANDV----------------TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~----------------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
+++|++.+++..... |+.. .....+..+...+..+++...+.+..+.....++...+..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999987742 3211 1111222334456778888888887765333446778889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
.+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|.++.++..++.+|...|++++|.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 3444 57789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 043370 296 EFREAMRE 303 (430)
Q Consensus 296 ~~~~~m~~ 303 (430)
+.+++..+
T Consensus 261 ~~~~~al~ 268 (323)
T d1fcha_ 261 EHFLEALN 268 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.3e-09 Score=96.37 Aligned_cols=260 Identities=10% Similarity=-0.039 Sum_probs=182.1
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CC---cHhHHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPD-----KITFVSVISSCSELATLGQGQQIHAEVVKAGA--SL---DVGVISS 112 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~---~~~~~~~ 112 (430)
....+...|++++|++++++.++.. +.+ ...+..+..++...|++++|...+++..+... .. ....+..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3455778889999999888887753 222 23566677788888899999888887765321 11 1345566
Q ss_pred HHHHHHhcCCHHHHHHHHhccC-------CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHH
Q 043370 113 LISMYSRCGCLDDSVKTFLECE-------YS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE----FEANDVTFV 177 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~-------~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~ 177 (430)
+...|...|++..|...+.... .+ ....+..+...+...|+++.+...+....... ......++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 7778888899888888776532 11 12355566778888999999999998876542 122334555
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-----CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHH
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKP-----RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-----NAIIWKT 246 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ 246 (430)
.....+...+....+...+........... ....+..+...+...|++++|...++.. ...| ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 666677788888888887776654322111 1234566677788899999999999877 2221 2445666
Q ss_pred HHHHHHhcCChhHHHHHHHHHh------cCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 247 LLSACKTHKSTDMAGRIAEEIL------GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+...+...|+++.|...++++. +..|....++..+..+|...|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7778999999999999999886 23354567888899999999999999999887643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.8e-10 Score=99.59 Aligned_cols=222 Identities=10% Similarity=-0.034 Sum_probs=140.3
Q ss_pred ChhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 52 LAEDVLDQYNLMRMVGF-RP--DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
+.+.++.-+++...... .+ ...++..+..++.+.|++++|...|++.++..+. +..+++.+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 34556666666665321 11 1235666677778888888888888888876533 67788888888888888888888
Q ss_pred HHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCC
Q 043370 129 TFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRR 205 (430)
Q Consensus 129 ~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 205 (430)
.|++.. +.+..+|..+...|...|++++|++.|++..+.. +.+......+..++.+.+..+....+.......
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--- 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---
Confidence 888754 3456778888888888888889988888887753 334444444444555556555555555544332
Q ss_pred ccCHhHHHHHHHHHhhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHH
Q 043370 206 KPRLEHYTCVVDLLGRCGY----LDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYV 279 (430)
Q Consensus 206 ~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 279 (430)
.+....++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|+++.|...+++.+..+|.+...|.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22222222 2233322222 22222222111 11232 346677778899999999999999999999997765554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.6e-09 Score=96.55 Aligned_cols=210 Identities=9% Similarity=0.066 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
...|+.+-..+.+.+.+++|+++++++++.+ +-+...|+....++...| ++++|...++.+++.... +..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 3567777778888899999999999998863 335556777777777766 589999999998887644 7888888899
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC-----
Q 043370 116 MYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG----- 187 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----- 187 (430)
.+.+.|++++|+..|+.+. +.+...|+.+...+...|++++|++.|+++++.+ +-+...|+.+...+.+.+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 9999999999999988765 4578889999999999999999999999988864 335566666555544433
Q ss_pred -cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 043370 188 -LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKANAIIWKTLLSACK 252 (430)
Q Consensus 188 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 252 (430)
.+++|...+..+.+. .+.+...|..+...+...| .+++.+.++.. +...+...+..+...|.
T Consensus 200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 367788877777653 1235566666665554443 45555554443 22234555555655553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=1.7e-09 Score=96.17 Aligned_cols=217 Identities=9% Similarity=0.056 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--------------ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 54 EDVLDQYNLMRMVGFRPDKITFVSVISSCS--------------ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--------------~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
+.+..+|++++.. ++-+...|..-+.-+. ..+..+++..++++.++...+.+...+...+..+.+
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4456667776654 2334455544333221 123457788888888876556677788888888899
Q ss_pred cCCHHHHHHHHhccCC---CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhhhcCcHHHHHH
Q 043370 120 CGCLDDSVKTFLECEY---SD-VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY-ACSHCGLKEKGME 194 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~---~d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~ 194 (430)
.|+.+.|..+|+.+.. .+ ...|...+....+.|+.++|.++|+++.+.+ +.+...|..... -+...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 9999999999987542 23 3478888888888899999999999988764 333444443333 2344678899999
Q ss_pred HHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 195 FFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+|+.+.+. .+.+...|...++.+.+.|+++.|..+|++. +..|+ ...|...+.--..+|+.+.+..+.+++.
T Consensus 191 i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988864 3345678888888888999999999998876 34443 4578888888788899999999988888
Q ss_pred cCCCCC
Q 043370 269 GVNPQD 274 (430)
Q Consensus 269 ~~~p~~ 274 (430)
+..|..
T Consensus 269 ~~~~~~ 274 (308)
T d2onda1 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHCccc
Confidence 777643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3e-09 Score=94.73 Aligned_cols=211 Identities=9% Similarity=-0.023 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNG-LAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
.+++.+...+.+.+..++|+++++++. ..+...|+....++...| ++++|+..+++..+.. +-+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 467778888999999999999999875 347789999999988877 5899999999998864 45688899999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC------
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGK------ 153 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~------ 153 (430)
.+.|++++|...+..+++.... +..+|..+...+.+.|++++|...|+.+. ..+..+|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence 9999999999999999997644 89999999999999999999999999865 4578889988777776665
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
+++|++.+.+..+.. +.+...+..+...+...| .+++.+.++...+......+...+..+++.|..
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 578999999988863 446777777766666554 467777777765431222245566667766643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=9.6e-11 Score=105.68 Aligned_cols=269 Identities=10% Similarity=-0.045 Sum_probs=192.6
Q ss_pred HHHHHHHHHcCChHHHHHHHccCC--CC-CHHHHHHHHHH----------HHHCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMP--IR-NVIAWITLIAG----------KAQNGLAEDVLDQYNLMRMVGFRPDKITFV 76 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 76 (430)
..++....+.+..++|++++++.. .| +...|+..-.. +...|++++|+.+++...+.. +-+...|.
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 334444444444589999998765 34 44566544333 233445789999999998764 44666777
Q ss_pred HHHHHHhccC--ChHHHHHHHHHHHHcCCCCcHhHH-HHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHh
Q 043370 77 SVISSCSELA--TLGQGQQIHAEVVKAGASLDVGVI-SSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGF 150 (430)
Q Consensus 77 ~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~ 150 (430)
.+..++...+ +++++...+..+.+.... +...+ ..+...+...|..++|...++.... .+..+|+.+...+.+
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 7777766655 588999999999887544 45554 4556788889999999999998763 478899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
.|++++|...+++..+. .|+.. .+...+...+..+++...+...... .+++...+..+...+...|+.++|..
T Consensus 191 ~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 99998887766654442 22221 2233344556666777777776643 34455566677788888899999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 231 LIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 231 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
.+.+. ...| +..+|..+...+...|+.++|...++++.+++|.+...|..|...+.-
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 88876 5566 456788888889999999999999999999999877778777666653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.1e-08 Score=91.82 Aligned_cols=289 Identities=9% Similarity=0.004 Sum_probs=204.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCC--CC--C----HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HHHH
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMP--IR--N----VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF-RPD----KITF 75 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~--~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~ 75 (430)
.......+...|++++|.++|++.. .| + ...++.+...|...|++++|+..|++..+... .++ ..++
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3445567789999999999998642 12 2 35677888999999999999999998865311 112 2345
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCCC---cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CCHhH
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKA----GASL---DVGVISSLISMYSRCGCLDDSVKTFLECEY--------SDVVL 140 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~d~~~ 140 (430)
..+...+...|++..+...+...... +... ....+..+...|...|+++.|...+..... ....+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 66677788899999999988876542 2221 123566778899999999999999876431 23456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHH
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQK----EFEAN--DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHY 212 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 212 (430)
+..+...+...++..++...+.+.... +..+. ...+..+...+...|+.++|...+....+.....+ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 666777888899999999988876542 11111 23455566778889999999999998765321111 23456
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC--C-------C
Q 043370 213 TCVVDLLGRCGYLDEAAALIRNM-------PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ--D-------A 275 (430)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~-------~ 275 (430)
..+...|...|++++|...+++. +..|+ ..++..+...+...|+.++|.+.+++.+++.+. . .
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~ 334 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 334 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence 67888999999999999988865 33443 456777778899999999999999998765431 1 1
Q ss_pred hhHHHHHHHHHhccchhHHHHH
Q 043370 276 APYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
.....++..+...++.+++.+-
T Consensus 335 ~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 335 EAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHH
Confidence 2334455666667777776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=1.9e-08 Score=89.12 Aligned_cols=212 Identities=6% Similarity=-0.025 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHH--------------hcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhc
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMYS--------------RCGCLDDSVKTFLECE----YSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~--------------~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~ 151 (430)
.+..+|++++.. ++.+..+|...+..+- ..+..++|..+|+... +.+...|...+..+.+.
T Consensus 34 Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 34 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 345566666654 2335555554444332 2345678888888643 44677899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH-HhhcCCHHHHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL-LGRCGYLDEAAA 230 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~ 230 (430)
|+.++|..+|+++.+.........|...+..+.+.|..+.|+++|..+.+. .+.+...|...... +...|+.+.|..
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 999999999999987643333457889999999999999999999999864 23344555554444 344689999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----hhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 231 LIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA----APYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 231 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+|+.+ ...| +...|...+..+...|+.+.|..+|++.+...|.++ ..|...+..-...|+.+.+..+.+++.+.
T Consensus 191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99988 2223 578899999999999999999999999988766443 36777888778899999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=7.6e-10 Score=99.62 Aligned_cols=255 Identities=10% Similarity=-0.018 Sum_probs=182.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH-HHH---HHHHHhc-------cCChHHHHHHHHHHHHcCCCCcHh
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKIT-FVS---VISSCSE-------LATLGQGQQIHAEVVKAGASLDVG 108 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~---ll~~~~~-------~g~~~~a~~~~~~~~~~g~~~~~~ 108 (430)
++.++...-..+..++|++++++.++. .|+..+ |+. ++..... .|.++++..+++.+.+..+. +..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHH
Confidence 344444333344458999999999875 566543 433 2232222 34578889999998887543 777
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHhccC---CCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 109 VISSLISMYSRCG--CLDDSVKTFLECE---YSDVVLWSSM-IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 109 ~~~~li~~~~~~g--~~~~A~~~~~~~~---~~d~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
.+..+..++...+ ++++|...++.+. .++...|... ...+...+.+++|+..+++..+.. +-+...|..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~ 187 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 8887777777766 5889999998864 4466666544 467777899999999999988864 3467778888888
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a 260 (430)
+...|+.++|...+....+. .|. ...+...+...+..+++...+... ...++...+..+...+...++.+.|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 88888888776665554432 121 122333445566666777766655 2223455566677778888999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
...+.+....+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=2.3e-08 Score=85.93 Aligned_cols=199 Identities=10% Similarity=-0.088 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
....|..+...|.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|...|+++++..+. +..++..+..
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 113 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHH
Confidence 34577788899999999999999999999864 456788999999999999999999999999997644 6778889999
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh----cCc
Q 043370 116 MYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----CGL 188 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 188 (430)
+|...|++++|.+.|+... +.+...+..+..++.+.+..+.+..+........ ++...+. ++..+.. .+.
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHH
Confidence 9999999999999998754 3355555555556666666666666666665543 2222222 2222222 122
Q ss_pred HHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 043370 189 KEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAI 242 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 242 (430)
.+.+...+.... ...|+ ..+|..+...|...|++++|.+.|+.. ...|+..
T Consensus 191 ~~~~~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 191 MERLKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHHCCSHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHhh---hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 233333222221 12232 356777899999999999999999987 6667643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.1e-07 Score=75.99 Aligned_cols=140 Identities=6% Similarity=-0.036 Sum_probs=97.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
...+...|+++.|++.|+++.+++...|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5567788899999999998888888888888889999999999999999888764 345677888888888899999998
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
..|++.... .+++... .|...| +..+++ ..++..+..++...|+++.|.+.++...++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888887642 1111000 000000 001111 23344555567777888888888888777776
Q ss_pred C
Q 043370 273 Q 273 (430)
Q Consensus 273 ~ 273 (430)
.
T Consensus 152 ~ 152 (192)
T d1hh8a_ 152 E 152 (192)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=8e-07 Score=72.38 Aligned_cols=139 Identities=4% Similarity=-0.112 Sum_probs=83.4
Q ss_pred HHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 043370 13 AHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQ 92 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 92 (430)
...+...|+++.|++.|+++..++...|..+...|...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4455666777777777777666666667667777777777777777777776654 345566666666667777777777
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043370 93 QIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 93 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 168 (430)
..|++.++... .+... .|...|. .........+..+..+|.+.|++++|.+.|....+..
T Consensus 91 ~~~~kAl~~~~-~n~~~------~~~~~~~---------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQLR-GNQLI------DYKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHTTT-TCSEE------ECGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCc-cCchH------HHHHhhh---------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666654311 11000 0000000 0000012455567778888888888888888877653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=9.6e-07 Score=77.05 Aligned_cols=93 Identities=10% Similarity=0.040 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-----C----CHhHHHHHHHHHHh-cCChHHHHHHHHHHHH----CCCCCC-H
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECEY-----S----DVVLWSSMIAAYGF-HGKGEEAINLFEQMEQ----KEFEAN-D 173 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----d~~~~~~li~~~~~-~g~~~~A~~~~~~m~~----~g~~p~-~ 173 (430)
+|..+..+|.+.|++++|...++.... . ...++..+...|.. .|++++|++.|++..+ .+.++. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 444445555555555555544443210 0 12233334444422 3555555555554432 111111 1
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
.++..+...+...|++++|...|+++..
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 2344445555555555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.5e-07 Score=77.21 Aligned_cols=106 Identities=8% Similarity=-0.090 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 043370 171 ANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLL 248 (430)
Q Consensus 171 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 248 (430)
|+...+......+.+.|++++|...|.+.++. .+.+...|..+..+|.+.|++++|...|++. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55556666666666777777777777666543 1234556666666666666666666666665 4445 355666666
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
.+|...|+++.|...++++++++|.+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 666666666666666666666655433333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=4.7e-07 Score=67.23 Aligned_cols=103 Identities=14% Similarity=0.014 Sum_probs=71.5
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 043370 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKST 257 (430)
Q Consensus 180 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 257 (430)
...+...|++++|...|.+.++. .+.+...|..+..+|.+.|++++|...++.. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 45566677777777777777653 2335566777777777777777777777766 3333 566777777778888888
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 258 DMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
++|+..+++.++++|.++..+..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888776666655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=4.8e-06 Score=72.43 Aligned_cols=197 Identities=7% Similarity=-0.044 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-----CcHh
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRPD-KITFVSVISSCSELATLGQGQQIHAEVVKAGAS-----LDVG 108 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~ 108 (430)
.|......|...|++++|++.|.+..+. +-+++ ..+|..+..++.+.|++++|.+.++...+.-.. ....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 4666778888999999999999888652 21222 357888888999999999999999877653111 1244
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CH
Q 043370 109 VISSLISMYSR-CGCLDDSVKTFLECEY-----S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-----ND 173 (430)
Q Consensus 109 ~~~~li~~~~~-~g~~~~A~~~~~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~ 173 (430)
++..+...|.. .|++++|...|++... . -..+|..+...|...|++++|++.|++........ ..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 56667777744 6999999999976531 1 13567888999999999999999999987753111 11
Q ss_pred -HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC---HhHHHHHHHHHhh--cCCHHHHHHHHHhC
Q 043370 174 -VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR---LEHYTCVVDLLGR--CGYLDEAAALIRNM 235 (430)
Q Consensus 174 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~--~g~~~~A~~~~~~m 235 (430)
..+...+..+...|+++.|...++...+...--++ ......++.++.. .+.+++|..-|+++
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12334445666788999999998888643111112 2234555666554 34577888888776
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=2.7e-07 Score=75.69 Aligned_cols=96 Identities=9% Similarity=-0.056 Sum_probs=68.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHH
Q 043370 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTC 214 (430)
Q Consensus 136 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 214 (430)
|++.........|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|...|....+ +.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 445555566677777788888888887776653 44566677777777788888888888877763 445 4567777
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 043370 215 VVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m 235 (430)
+..+|.+.|++++|...|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 777788888888887777765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=6.4e-07 Score=66.48 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=82.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchh
Q 043370 215 VVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQ 292 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 292 (430)
-...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..+++.++++|.++..|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456788999999999999998 4445 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 043370 293 GVSEFREAMRER 304 (430)
Q Consensus 293 ~a~~~~~~m~~~ 304 (430)
+|...+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=4.4e-07 Score=66.82 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=79.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccc
Q 043370 213 TCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKR 290 (430)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 290 (430)
-.+...+.+.|++++|...|++. ...| +...|..+...+...|++++|+..+++.++++|.++.++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34566788899999999999987 4455 588899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 043370 291 WQGVSEFREAM 301 (430)
Q Consensus 291 ~~~a~~~~~~m 301 (430)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.8e-06 Score=67.88 Aligned_cols=117 Identities=10% Similarity=-0.012 Sum_probs=87.0
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKS 256 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 256 (430)
-.+.|.+.|++++|...|.+..+. .+.+...|..+..+|...|++++|...|++. ...| +..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345667788888888888887754 2335677788888888888888888888877 4445 56788888888999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHH--HhccchhHHHHH
Q 043370 257 TDMAGRIAEEILGVNPQDAAPYVLLSNIH--ASAKRWQGVSEF 297 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 297 (430)
+++|...+++...++|.++..+..+..+. ...+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998887777665553 334445555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.34 E-value=0.00014 Score=61.80 Aligned_cols=231 Identities=9% Similarity=-0.027 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCcHhHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE----LATLGQGQQIHAEVVKAGASLDVGVIS 111 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 111 (430)
|+..+..|...+-+.+++++|++.|++..+.| |...+..|...+.. ..+...+...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34455566666666677777777777666654 34444444444433 345555555555555443 222223
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hhhcCcH
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA--CSHCGLK 189 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~ 189 (430)
.|...+... .....+.+.|...++.....|.. ........... .......
T Consensus 75 ~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~~ 126 (265)
T d1ouva_ 75 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRDF 126 (265)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCCH
T ss_pred ccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcccchh
Confidence 333332210 00123444555555554444321 11111111111 1122334
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR----CGYLDEAAALIRNMPVKANAIIWKTLLSACKT----HKSTDMAG 261 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~ 261 (430)
..+...+...... .+...+..|...|.. ..+...+...++......+......+-..+.. ..+.+.|.
T Consensus 127 ~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~ 202 (265)
T d1ouva_ 127 KKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL 202 (265)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhh
Confidence 4444444443321 233444445444443 34445555555544212244444444444433 45778888
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHh----ccchhHHHHHHHHHHhCCC
Q 043370 262 RIAEEILGVNPQDAAPYVLLSNIHAS----AKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 306 (430)
..|++..+.+ ++.++..|..+|.. ..+.++|.+.+++-.+.|-
T Consensus 203 ~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 203 ARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8888877665 45677777777765 3477778888887766663
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.4e-06 Score=68.55 Aligned_cols=91 Identities=10% Similarity=0.018 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 214 CVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
.....|.+.|++++|...|++. ...| +...|..+...|...|+++.|...++++++++|.+..+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3455788999999999999988 4445 6788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 043370 292 QGVSEFREAMRER 304 (430)
Q Consensus 292 ~~a~~~~~~m~~~ 304 (430)
++|...+++..+.
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=6e-06 Score=65.55 Aligned_cols=134 Identities=11% Similarity=0.036 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
..+......+.+.|++++|+..|++.+..- |... +..+.-......+ -..+|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchh--------HHHHHHHHHHH
Confidence 345556667788888888888888776531 1000 0000000111111 12356778888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHH
Q 043370 219 LGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 294 (430)
|.+.|++++|...++.. ...| ++..|..+..++...|+++.|...|+++++++|+++.+...+..+....+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4456 7888999999999999999999999999999999999888888887666655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3e-06 Score=63.05 Aligned_cols=104 Identities=14% Similarity=-0.010 Sum_probs=75.4
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL---DEAAALIRNM-PVKANA---IIWKTLLS 249 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 249 (430)
..+++.+...+++++|.+.|+...+. -+.+..++..+..++.+.++. ++|..+++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35667777788888888888887753 234667777788887765544 4588888876 434433 36777888
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
+|...|++++|.+.++++++++|.+..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 899999999999999999999997766554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.17 E-value=9.8e-06 Score=59.25 Aligned_cols=88 Identities=7% Similarity=-0.069 Sum_probs=60.2
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
+...+.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|...+++.++..+. +..++..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 4555667777777777777777653 335666777777777777777777777777766433 56667777777777777
Q ss_pred HHHHHHHHhc
Q 043370 123 LDDSVKTFLE 132 (430)
Q Consensus 123 ~~~A~~~~~~ 132 (430)
+++|.+.|++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.15 E-value=2.7e-05 Score=61.45 Aligned_cols=93 Identities=15% Similarity=0.003 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
..|+.+..+|.+.|++++|...++.. ...| +...|..+..++...|++++|...+++++.++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888899999999999999887 4344 688888999999999999999999999999999999888888887776
Q ss_pred ccchhH-HHHHHHHHH
Q 043370 288 AKRWQG-VSEFREAMR 302 (430)
Q Consensus 288 ~g~~~~-a~~~~~~m~ 302 (430)
.+...+ ..+++..|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 665543 455555554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=0.0017 Score=54.63 Aligned_cols=188 Identities=9% Similarity=-0.025 Sum_probs=120.5
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC-CCCHHHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP-IRNVIAWITLIAGKAQ----NGLAEDVLDQYNLMRMVGFRPDKITFVSVI 79 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 79 (430)
|+..+..|...+-+.+++++|.+.|++.. ..|..++..|...|.. ..++..|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 56678888889999999999999999875 3477777778888877 668899999999888776 334444443
Q ss_pred HHHh----ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHHHHHHh
Q 043370 80 SSCS----ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMIAAYGF 150 (430)
Q Consensus 80 ~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~ 150 (430)
..+. ...+.+.|...++...+.|.. .....+...+.. ......|...+.... ..+...+..|...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 3333 346788899999988887643 223333333332 345566666665533 3466677777766665
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh----cCcHHHHHHHHHHHhh
Q 043370 151 ----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----CGLKEKGMEFFDLMVK 201 (430)
Q Consensus 151 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 201 (430)
..+...+...++...+.| +......+...+.. ..+.++|..+|....+
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~ 210 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 210 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred CCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc
Confidence 345556666666665544 33344444333332 3456666666666544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=2.1e-05 Score=62.16 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHH
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLL 219 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 219 (430)
+......+.+.|++++|++.|++.++. .+. ........+ .. .+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~-------~~---~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDAD-------GA---KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHH-------HG---GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHH-------HH---HhChhhHHHHHHHHHHH
Confidence 445566677888888888888876542 000 000000000 00 1122 456777888999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH
Q 043370 220 GRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
.+.|++++|+..+++. .+.| +...|..+..++...|+++.|...|+++++++|++..+...|..+........+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 5566 678899999999999999999999999999999988888887777655444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.3e-05 Score=58.13 Aligned_cols=96 Identities=10% Similarity=-0.045 Sum_probs=62.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH---HHHHHHHhccCCCC-----HhHHHHHHHH
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL---DDSVKTFLECEYSD-----VVLWSSMIAA 147 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~d-----~~~~~~li~~ 147 (430)
..+++.+...+++++|++.|+..++.++. +..++..+..++.+.++. ++|+.+|+++...+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34566666777777777777777776533 667777777777665443 35777777654321 2356667777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDV 174 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 174 (430)
|.+.|++++|++.|++.++. .|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 77777777777777777774 45543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=4.4e-05 Score=60.30 Aligned_cols=63 Identities=6% Similarity=-0.031 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+|+.+..+|.+.|+++.|+..+++.+.++|.++.++..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456677778999999999999999999999999999999999999999999999999998663
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=2.4e-05 Score=60.64 Aligned_cols=127 Identities=9% Similarity=-0.117 Sum_probs=88.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
...+......+.+.|++++|+..|.+.+..- |... ...-.... .... .....+|+.+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~---~~~~-----~~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILL---DKKK-----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHH---HHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHH---Hhhh-----hHHHHHHhhHHH
Confidence 3456667778888899999999888877531 1100 00000000 0000 112346777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+|.+.|++++|.+.++.. ...| +..+|..+..++...|+++.|...|++.++++|.|+.+...+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999887 4455 6788999999999999999999999999999998877766655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.0037 Score=54.42 Aligned_cols=244 Identities=11% Similarity=0.069 Sum_probs=129.9
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
||..--..+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 3334444566677788888888888876654 6667777888888888877765441 4567777788877
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+......+ ++.......+......++..|-..|..++...+++... ..+...++-++..|++.+ .++-++.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 76655433 22223333455555677888888888888888887542 446667777887777754 3333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
++.. +-.-|. ..++..|.+.+.+ .-++-.|.+.|++++|..+.-.-+ ++
T Consensus 155 l~~~---s~~y~~---~k~~~~c~~~~l~-----------------------~elv~Ly~~~~~~~~A~~~~i~~~--~~ 203 (336)
T d1b89a_ 155 LELF---WSRVNI---PKVLRAAEQAHLW-----------------------AELVFLYDKYEEYDNAIITMMNHP--TD 203 (336)
T ss_dssp HHHH---STTSCH---HHHHHHHHTTTCH-----------------------HHHHHHHHHTTCHHHHHHHHHHST--TT
T ss_pred HHhc---cccCCH---HHHHHHHHHcCCh-----------------------HHHHHHHHhcCCHHHHHHHHHHcc--hh
Confidence 3222 111111 1233444444433 334555666666666666544332 12
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHH
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFR 298 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 298 (430)
+.-....+..+.+..+.+...++....++..| .....|+......-+.....+.+
T Consensus 204 ~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p---~~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 204 AWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCH---HHHHHHHHHhccCCCHHHHHHHH
Confidence 22233445556666666666666665554433 33445555554444444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=7.7e-05 Score=57.68 Aligned_cols=63 Identities=11% Similarity=-0.033 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+|..+..+|.+.|+++.|+..++++++++|.+..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467778888999999999999999999999999999999999999999999999999987653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.4e-05 Score=59.98 Aligned_cols=91 Identities=9% Similarity=0.058 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh-------hHHHHH
Q 043370 212 YTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA-------PYVLLS 282 (430)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 282 (430)
+-.+...|.+.|++++|...|++. ...| +...|..+..+|...|+++.|...++++++++|.++. +|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667788888888888888877 3344 5778888888899999999999999999988876654 455666
Q ss_pred HHHHhccchhHHHHHHHHHH
Q 043370 283 NIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~ 302 (430)
..+...+++++|.+.+++-.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77788889999999887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.85 E-value=4.7e-05 Score=60.61 Aligned_cols=120 Identities=9% Similarity=0.043 Sum_probs=84.5
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTD 258 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 258 (430)
........|++++|.+.|.....-+.-.+-.. +....-......-++. -....+..+...+...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 34567788999999999988875422111000 0000000110111111 12456778888999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh-----CCCCCCC
Q 043370 259 MAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE-----RNVKKEP 310 (430)
Q Consensus 259 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 310 (430)
.|...++++++.+|.+...|..++.+|...|++.+|.+.|+.+.+ .|+.|.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999999999999999999999999999999998753 5776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.00011 Score=57.83 Aligned_cols=107 Identities=9% Similarity=0.026 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCC-------------------CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMPI-------------------RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP 70 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 70 (430)
......+.+.|+++.|++.|.+... .+...|+.+..+|.+.|++++|+..+.+.++.. +.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~ 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PS 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hh
Confidence 3445566777778777777755321 122344555555556666666666666655543 33
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
+..+|..+..++...|++++|.+.|+.+++..+. +..+...|..++.
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~ 156 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQ 156 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4455555555666666666666666665554322 4444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.00017 Score=53.78 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 143 SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
.+...|.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|...+..++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 34445555555555555555555542 2234445555555555555555555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.01 Score=51.55 Aligned_cols=250 Identities=10% Similarity=0.046 Sum_probs=145.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
|..++..|.+.++++.|.+++.+.. +..+|..+...+.+.....-|. +.......+......++..|-..|.+
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~ 115 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYF 115 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCCh
Confidence 4457777777777777777776543 6779999999999888765542 22333455667778899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CH----------hHHHHHHHHHHhcCChHHH
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-DV----------VLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-d~----------~~~~~li~~~~~~g~~~~A 157 (430)
++...+++..... -..+...++-++.+|++.+. ++-.+.+...... |+ ..|.-++-.|.+.|++++|
T Consensus 116 e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A 193 (336)
T d1b89a_ 116 EELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 193 (336)
T ss_dssp HHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHH
Confidence 9999999987643 34577889999999998763 4555555443221 11 1244444555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPV 237 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (430)
..+.- +. .|+..-....+..+.+..+.+...+......+. .| ...+.|+......-+..+..
T Consensus 194 ~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V-------- 255 (336)
T d1b89a_ 194 IITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAV-------- 255 (336)
T ss_dssp HHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHH--------
T ss_pred HHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHH--------
Confidence 44432 11 222222223334445555555444444443322 12 22233333333333333333
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHH
Q 043370 238 KANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFR 298 (430)
Q Consensus 238 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 298 (430)
.-+.+.+++......++.....+ +.....+|...|...++++.-++..
T Consensus 256 -----------~~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 256 -----------NYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp -----------HHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------HHHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 34445555566666666554433 3457777888888877765544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.72 E-value=0.00044 Score=54.15 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+|..+..+|.+.|++++|+..+++.++++|.+..+|..++.+|...|++++|...++...+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345567777899999999999999999999999999999999999999999999999998654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=4e-06 Score=78.98 Aligned_cols=222 Identities=7% Similarity=-0.076 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 043370 55 DVLDQYNLMRMVGFRPDK-ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLEC 133 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 133 (430)
+|.+.|++..+. +||. ..+..+..++...++++++ +++++...+. ....++....... ..+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~Lw~--~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQDLWN--HAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHHHHH--HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHHHHH--HHHHHHHHHHHHh
Confidence 677888887763 4543 3455555566666666554 6666554211 1111221111111 1123344444432
Q ss_pred C----CCCHhHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc
Q 043370 134 E----YSDVVLWSSMIAA--YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP 207 (430)
Q Consensus 134 ~----~~d~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 207 (430)
. .++.........+ +...+.++.|+..+.+..... +++...+..+...+.+.|+.++|...+....+. .|
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH---HH
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH
Confidence 2 1222222111112 222344555555554443321 234556667777777888888888776665432 12
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
..++..+.+.+...|++++|...|++. ...| +...|+.|...+...|+..+|...|.+.+..+|+.+.++..|...+
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 256777888888888999998888887 4555 4578888888888889999999999988888887888888888777
Q ss_pred Hhcc
Q 043370 286 ASAK 289 (430)
Q Consensus 286 ~~~g 289 (430)
.+..
T Consensus 231 ~~~~ 234 (497)
T d1ya0a1 231 SKAL 234 (497)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=8.7e-06 Score=76.59 Aligned_cols=258 Identities=9% Similarity=-0.032 Sum_probs=141.0
Q ss_pred HHHHHHccCC--CC-CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 24 EGEKVIRLMP--IR-NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI-TFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 24 ~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
+|.+.|++.. +| ...+|..+..+|...|++++| |++++.. .|+.. ..+ +...+.+ ..+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~-~e~~Lw~-~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKK-VEQDLWN-HAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHT-HHHHHHH-HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHh-HHHHHHH-HHHHHHHHHHHHhc
Confidence 4555555543 23 345666777788888888876 6777654 23211 111 1111111 12345666676666
Q ss_pred HcCCCCcHhHH--HHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043370 100 KAGASLDVGVI--SSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDV 174 (430)
Q Consensus 100 ~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 174 (430)
+....++..-. ..+...+...+.++.|...+...- .++...|..+...+.+.|+.++|...+....... | ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH--H-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HH
Confidence 54433332222 222233445667788887777643 3466778888889999999999999888766531 2 35
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PV-KANAIIWKTLLSAC 251 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 251 (430)
++..+...+...|++++|...|.+..+. .| +...|+.|...|...|+..+|...|.+. .. .|-..++..|...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6778889999999999999999999854 45 5589999999999999999999999887 33 46778888888777
Q ss_pred HhcCChhHHHHHHHHHhcCCCC---CChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 252 KTHKSTDMAGRIAEEILGVNPQ---DAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.+..+...+ ....+. -...+..+...+.....+++..++.+++
T Consensus 231 ~~~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 231 SKALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHhhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 654432111 011111 1224455555566666776666555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.00053 Score=54.26 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=44.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh----hcCCccCHhH
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVK----KYRRKPRLEH 211 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 211 (430)
...+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|.+.|+++.+ ..|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3455556666666666666666666666642 33556666666666666666666666666532 2466666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=9.2e-05 Score=56.64 Aligned_cols=127 Identities=9% Similarity=0.075 Sum_probs=73.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc----------CcHHHHHHHHHHHhhhcCCcc-CHhHHHHHH
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC----------GLKEKGMEFFDLMVKKYRRKP-RLEHYTCVV 216 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 216 (430)
|-+.+.+++|++.|+...+.. +.+..++..+..++... +.+++|...|++..+. .| +...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhHH
Confidence 445566778888888877753 34455666666666533 3345566666655532 23 344555555
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHH
Q 043370 217 DLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
.+|...|++. ++... ..++++.|.+.|++.++++|.+...+..|... .+|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 5554433211 11111 11246889999999999999776655555444 45666
Q ss_pred HHHHHHhCCC
Q 043370 297 FREAMRERNV 306 (430)
Q Consensus 297 ~~~~m~~~g~ 306 (430)
++.+..+.|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777666664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.41 E-value=0.0003 Score=59.52 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=30.5
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA 101 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 101 (430)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566666666666665543 334555666666666666666666666665554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.35 E-value=0.00033 Score=59.31 Aligned_cols=125 Identities=11% Similarity=-0.006 Sum_probs=76.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHH
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 227 (430)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 35678888888888887763 445677777778888888888888888887643 443 3444444444444444444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 228 AAALIRNM--PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 228 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33322211 11232 2333334445777788888888888888777755443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00058 Score=47.64 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 212 YTCVVDLLGRCGYLDEAAALIRNM----P----VKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 344566666667777666666554 1 1122 567888888899999999999999999999998888777663
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.00049 Score=53.10 Aligned_cols=63 Identities=16% Similarity=-0.084 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC-------C----CChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNP-------Q----DAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...|+.+..+|...|+++.|...+++.+.+.| . ...++..+..+|...|++++|...|++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777778888888888888888764422 1 123577889999999999999999998754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.20 E-value=0.00081 Score=51.08 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=66.0
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL----------ATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
|-+.+.+++|+..|+...+.. +.|..++..+..++... +.+++|...++++++..+. +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 334556777777777777654 44556666666665533 3446677777777766433 56666667666
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 183 (430)
|...|++. ++... ..+.+++|.+.|++..+. .|+..++..-+..+
T Consensus 85 y~~~g~~~-----------~~~~~---------~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLT-----------PDETE---------AKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHC-----------CCHHH---------HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHcccch-----------hhHHH---------HHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH
Confidence 66554321 00000 012356788888887774 56666666555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.05 E-value=0.0027 Score=48.64 Aligned_cols=30 Identities=7% Similarity=-0.197 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.+..+..+|...|++++|...|++.+++.|
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456677778889999999999998876654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.015 Score=39.94 Aligned_cols=73 Identities=5% Similarity=-0.159 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVG-----FRPD-KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
+-.+...+.+.|++++|+..|++.++.. ..++ ..++..+..++.+.|++++|...++++++..+. +..+++.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 3345666677777777777776665421 1122 345666677777777777777777777665433 34444433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.52 Score=42.21 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=24.9
Q ss_pred HHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 043370 13 AHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV 66 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 66 (430)
+..+.+.++.+.....+..-+ .++..--....+..+.|+..+|...+..+-..
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 344455555555554443322 13333334445555556655555555554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.80 E-value=0.094 Score=38.25 Aligned_cols=109 Identities=9% Similarity=-0.028 Sum_probs=53.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSV 127 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 127 (430)
++++|++.|++..+.| .| .....+. .....+.++|.+.+++..+.| ++.....|..+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g-~~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EM--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CT--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC-Ch--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5667777777777665 22 2222222 223456667777777666655 34444555555543 23445555
Q ss_pred HHHhccC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 043370 128 KTFLECE-YSDVVLWSSMIAAYGF----HGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 128 ~~~~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 168 (430)
+.|+... ..++.+...|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5554432 2233333334333333 234444555554444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.12 E-value=0.34 Score=34.41 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 120 CGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
|+++......+-.+. .+....+..+....+.|+-+.-.++++.+.+.+ +|++.....+.+||.+.|...++.+++.+.
T Consensus 69 C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 69 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444433333332 233455667788888999999999999977754 788888889999999999999999999998
Q ss_pred hhhcCCc
Q 043370 200 VKKYRRK 206 (430)
Q Consensus 200 ~~~~~~~ 206 (430)
.+. |++
T Consensus 147 Ce~-G~K 152 (161)
T d1wy6a1 147 CKK-GEK 152 (161)
T ss_dssp HHT-TCH
T ss_pred HHH-hHH
Confidence 876 654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.34 E-value=0.36 Score=34.87 Aligned_cols=107 Identities=9% Similarity=-0.033 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-CCCHhHHHHHHHHHHh----cCChHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE-YSDVVLWSSMIAAYGF----HGKGEEAINLF 161 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~~~ 161 (430)
++++|.+.|++..+.|.. .....|.. ....+.++|.+.|+... ..++.+...|...|.. ..+.++|+++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 567888888888777632 23333332 23346666776666543 3345555555555543 33566677777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhh----cCcHHHHHHHHHHHhh
Q 043370 162 EQMEQKEFEANDVTFVSLLYACSH----CGLKEKGMEFFDLMVK 201 (430)
Q Consensus 162 ~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 201 (430)
++..+.| ++.....|...|.+ ..+.++|..+|+...+
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 7666655 22223333333332 3456666666666544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.15 E-value=0.61 Score=33.06 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=96.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHH
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 228 (430)
.-.|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+.+.+. .++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHH
Confidence 3467777778887777654 244556666655555556666666666665443332 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 229 AALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 229 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
...+-.++ .+.......++...+.|+-+.-.++++.+.+.+..++.....+..+|.+.|...++.+++.+.=++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44444443 234455667778888999999999999987766558888999999999999999999999998888863
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.75 E-value=0.62 Score=31.22 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.+....+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 5667888888888888999999999999999999999999999999876533 34556666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.47 E-value=1.1 Score=31.63 Aligned_cols=71 Identities=8% Similarity=0.005 Sum_probs=42.3
Q ss_pred cCHhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 207 PRLEHYTCVVDLLGRCG---YLDEAAALIRNM-PVKA-NA-IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 207 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
|++.+--....++.++. +++++..++++. ...| +. ..+-.|.-+|.+.|+++.|.+.++.+++.+|.|..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 44444444555555443 344566666655 2223 22 344455556778888888888888888888866544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.63 E-value=0.83 Score=32.36 Aligned_cols=66 Identities=8% Similarity=-0.022 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhc---CChhHHHHHHHHHhcCCCCCC-hhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 239 ANAIIWKTLLSACKTH---KSTDMAGRIAEEILGVNPQDA-APYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
|...+--...-++.++ .+.++|+.+++++.+.+|.+. ..+..|.-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4444444444455544 456789999999998888654 57788999999999999999999998653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.87 E-value=1.8 Score=28.95 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 54 EDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
=++.+-++.+....+.|++....+.+.||-+.+++..|.++++-+... ..++...|..++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 356666677777778888888888888888888888888888776543 223344555544
|