Citrus Sinensis ID: 043389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msflfgkrktpAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIddalegddeeeETEELVNQVLDEIGIDINqelvnapsstvaapavkgkvaqaeatgnddggidSDLQARLDNLRRM
Flexible Loop (DISEMBL)
msflfgkrktpaellrenKRMLDKSIREIererqglqtqeKKLISEIkksakqgqmgAVKVMAKDLIRTRHQIEKFYKlksqlqgvSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAeatgnddggidsDLQARLDNLRRM
Low Complexity Region (SEG)
MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMgdaiddalegddeeeeteelVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM
Disordered region (IsUnstruct)
*********************************************************AVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT***************************************************************************LDEIGIDINQ**********************************************
Disordered Region (DISOPRED)
*SFLF**RKT************************************************VKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKS***********TKAMGQMN**M**PS************************************EETEELVNQVLDEIGIDI*************************************LQARLDNLRR*
Disordered Region (DISEMBL)
MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIK**********VKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALE*********ELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM
Disordered Region (DISPRO)
*SF*FGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVN******************************DLQARLDN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFLFGKRKTPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNxxxxxxxxxxxxxxxxxxxxxxxxMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q9SKI2	225	Vacuolar protein sorting-	yes	no	1.0	0.991	0.915	1e-104
Q54DB1	198	Charged multivesicular bo	yes	no	0.869	0.979	0.639	2e-67
Q7ZW25	220	Charged multivesicular bo	yes	no	0.982	0.995	0.549	3e-58
Q9DB34	222	Charged multivesicular bo	yes	no	0.991	0.995	0.567	6e-56
O43633	222	Charged multivesicular bo	yes	no	0.829	0.833	0.6	3e-55
Q6DFS6	220	Charged multivesicular bo	yes	no	0.968	0.981	0.56	5e-55
Q6IP52	220	Charged multivesicular bo	N/A	no	0.968	0.981	0.56	6e-55
Q5ZHN1	220	Charged multivesicular bo	yes	no	0.829	0.840	0.578	1e-46
P36108	232	DOA4-independent degradat	yes	no	0.986	0.948	0.475	2e-46
Q941D5	210	Vacuolar protein sorting-	no	no	0.932	0.990	0.431	2e-43

>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/224 (91%), Positives = 215/224 (95%), Gaps = 1/224 (0%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M+ +FGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKK+AKQGQMGAVK
Sbjct: 2   MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 62  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
           SLQKIMQEFERQNEKMEMV+EVMGDAIDDALEGD+EEEETE+LV+QVLDEIGIDINQELV
Sbjct: 122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDD-GGIDSDLQARLDNLRRM 223
           NAPS  VA PA K KV QAEATG +D GGIDSDLQARLDNLR+M
Sbjct: 182 NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1

 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 160/194 (82%)

Query: 3   FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVM 62
           FLFGK+KTP E+LREN+R L+KS+REI+RER  LQ QEKK+I +IKK AKQGQM + K+M
Sbjct: 2   FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIM 61

Query: 63  AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 122
           AKDL+RTR+ I+KFY++K+QLQ VSLRIQTL+STQAM EAMKGVTKAM  MNRQMNLP  
Sbjct: 62  AKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQF 121

Query: 123 QKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNA 182
            KIM EFE+Q++KM+M  E+M D +D  +E D EEE+++E++NQVLDEIGID+  +LV+A
Sbjct: 122 TKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDA 181

Query: 183 PSSTVAAPAVKGKV 196
           P++   + A K +V
Sbjct: 182 PTTVGTSVASKHQV 195

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1

 Score =  224 bits (572), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 122/222 (54%), Positives = 172/222 (77%), Gaps = 3/222 (1%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M  LFG+RKTP E+LR+N+R L++++R+++RERQ L+ QEKK+I++IKK AKQGQM AVK
Sbjct: 1   MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           +MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            +QKIM EFERQ+E M+M  E+M DAIDDA+  +D+EEE++ +V+QVLDE+G+ ++ EL 
Sbjct: 121 QIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELS 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
           N P++  +     GK A+ + T  D    D+DL+ RL+NLRR
Sbjct: 181 NLPATGGSLSVAAGKKAEPQPTLAD---ADADLEERLNNLRR 219

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1

 Score =  217 bits (552), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 126/222 (56%), Positives = 171/222 (77%), Gaps = 1/222 (0%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct: 1   MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           +MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            +QKIM EFERQ E M+M  E+M DAIDDA+  +++EEE++ +V+QVLDE+G+ +  EL 
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
           N P ST  + +V     +AEAT +     D+DL+ RL NLRR
Sbjct: 181 NLP-STGGSLSVAAGGKKAEATASALADADADLEERLKNLRR 221

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Mus musculus (taxid: 10090)

>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/185 (60%), Positives = 151/185 (81%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct: 1   MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           +MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            +QKIM EFERQ E M+M  E+M DAIDDA+  +++EEE++ +V+QVLDE+G+ +  EL 
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180

Query: 181 NAPSS 185
           N PS+
Sbjct: 181 NLPST 185

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in HIV-1 p6- and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1

 Score =  214 bits (544), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/225 (56%), Positives = 172/225 (76%), Gaps = 9/225 (4%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M FLFG+RKTP E+LR+N+R L+K++RE++RERQ L+ QEKK+I++IKK AKQGQM AVK
Sbjct: 1   MEFLFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           +MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            +QKIM EFE+Q+E M+M  E+M DAIDDA+  +D+EEE++ +V+QVLDE+G+ +  EL 
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELS 180

Query: 181 NAPS---STVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
           N PS   S   A A KG+ + A A  +      +DL+ RL+NLRR
Sbjct: 181 NLPSTGGSLSVAGAKKGEPSAALADAD------ADLEERLNNLRR 219

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1

 Score =  213 bits (543), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 126/225 (56%), Positives = 171/225 (76%), Gaps = 9/225 (4%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M FLFG+RKTP ELLR+N+R L++++RE++RERQ L+ QEKK+I++IKK AKQGQM AVK
Sbjct: 1   MEFLFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           +MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            +QKIM EFE+Q+E M+M  E+M DAIDDA+  +D+EEE++ +V+QVLDE+G+ +  EL 
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELS 180

Query: 181 NAPS---STVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
           N PS   S   A A KG+   A A  +      +DL+ RL+NLRR
Sbjct: 181 NLPSTGGSLSVAGAKKGEATAALADAD------ADLEERLNNLRR 219

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 144/185 (77%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M  LFG+RKTP ELLR+N+R L +++RE++RERQ L+ QEKK+I +IKK AKQGQM AVK
Sbjct: 1   MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           +MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M  AMKGVTKAM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            +QKIM EFE+Q   M+M  E+M DAIDDA+  +D+EEE++ +V+QVLDE+G+++  EL 
Sbjct: 121 QIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELA 180

Query: 181 NAPSS 185
             P  
Sbjct: 181 TLPPP 185

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 156/225 (69%), Gaps = 5/225 (2%)

Query: 3   FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVM 62
           ++FGK  TP E L++N+R L+++ RE+ERE++ L+ Q+KKL+SEIKKSAK GQ+ A KV 
Sbjct: 6   WVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQ 65

Query: 63  AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 122
           AKDL+RTR+ I+KF  +K+QLQ +SLRIQ ++S+  M  +M   T  +  MNR MNLP L
Sbjct: 66  AKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQL 125

Query: 123 QKIMQEFERQNEKMEMVTEVMGDAIDDAL-EGDDEEEETEELVNQVLDEIGIDINQELVN 181
           Q+I  EFE+Q++ M    E M +AID+ + +  DE+EE +E+VN+VLDEIG+D+N +L +
Sbjct: 126 QRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQS 185

Query: 182 APSSTVA-APAVKGKVAQAEATGNDD---GGIDSDLQARLDNLRR 222
            P + V+ AP  +  +   E  G      G  D DLQARL+ L++
Sbjct: 186 TPQNLVSNAPIAETAMGIPEPIGAGSEFHGNPDDDLQARLNTLKK 230

Required for the sorting and concentration of proteins resulting in the entry of these proteins into the invaginating vesicles of the multivesicular body (MVB). Acts a component of the ESCRT-III complex, which appears to be critical for late steps in MVB sorting, such as membrane invagination and final cargo sorting and recruitment of late-acting components of the sorting machinery. The MVB pathway requires the sequential function of ESCRT-O, -I,-II and -III complex assemblies. Can directly stimulate VPS4 ATPase activity. The DID4/VPS2-VPS24 subcomplex is required for the VPS4-dependent dissociation of ESCRT-III.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 143/218 (65%), Gaps = 10/218 (4%)

Query: 4   LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMA 63
           +F K+  P E+LRE+KR + ++ R IE+E   LQ++EKKL+ EIK++AK G  GA K++A
Sbjct: 3   IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILA 62

Query: 64  KDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQ 123
           + LIR R QI      ++Q++G++   Q + +  ++   M+G TKAM  M++ M+     
Sbjct: 63  RQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQA 122

Query: 124 KIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAP 183
           K+M+EF++Q+ +M+M TE+M D+IDDAL+ D+ E+ETE+L NQVLDEIGIDI  +L +AP
Sbjct: 123 KVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAP 182

Query: 184 SSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 221
                    KGK+   +A      GID +L+ RL  LR
Sbjct: 183 ---------KGKIGGKKAEDVGSSGID-ELEKRLAALR 210

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
449452546	223	PREDICTED: vacuolar protein sorting-asso	1.0	1.0	0.937	1e-109
255546017	223	Charged multivesicular body protein 2a,	1.0	1.0	0.968	1e-105
147844315	226	hypothetical protein VITISV_007913 [Viti	1.0	0.986	0.902	1e-104
242043420	223	hypothetical protein SORBIDRAFT_02g00701	1.0	1.0	0.883	1e-103
195620320	223	charged multivesicular body protein 2a [	1.0	1.0	0.878	1e-102
18396352	225	vacuolar protein sorting-associated prot	1.0	0.991	0.915	1e-102
21617956	224	unknown [Arabidopsis thaliana]	1.0	0.995	0.915	1e-102
194694646	223	unknown [Zea mays] gi|414884079|tpg|DAA6	1.0	1.0	0.874	1e-102
224122442	223	predicted protein [Populus trichocarpa]	1.0	1.0	0.955	1e-102
192912968	223	breast adenocarcinoma marker-like [Elaei	1.0	1.0	0.878	1e-102

>gi|449452546|ref|XP_004144020.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like [Cucumis sativus] gi|449527460|ref|XP_004170729.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like [Cucumis sativus]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/223 (93%), Positives = 219/223 (98%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           MSFLFGKRKTPAELLRENKRMLDKSIREI+RERQGLQTQEKKLI+EIKKSAKQGQMGAVK
Sbjct: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIDRERQGLQTQEKKLIAEIKKSAKQGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDL+RTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 61  VMAKDLVRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
           SLQKIMQEF +QNEKME++TEVM DAIDDALEGD+EEEETEELV+QVLDEIGID+NQELV
Sbjct: 121 SLQKIMQEFMKQNEKMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELV 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223
           NAPS+ VAAPAVK KVAQAEATGNDDGGIDSDLQARLDNLRRM
Sbjct: 181 NAPSTAVAAPAVKTKVAQAEATGNDDGGIDSDLQARLDNLRRM 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546017|ref|XP_002514068.1| Charged multivesicular body protein 2a, putative [Ricinus communis] gi|223546524|gb|EEF48022.1| Charged multivesicular body protein 2a, putative [Ricinus communis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/223 (96%), Positives = 219/223 (98%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKKSAKQGQMGAVK
Sbjct: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLIAEIKKSAKQGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
           SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGD+EEEETEELV+QVLDEIGIDINQELV
Sbjct: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDEEEEETEELVSQVLDEIGIDINQELV 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223
           NAPSS VAAPA KGKVAQAEATG DD GIDSDLQARLDNLRRM
Sbjct: 181 NAPSSAVAAPAAKGKVAQAEATGTDDSGIDSDLQARLDNLRRM 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844315|emb|CAN80030.1| hypothetical protein VITISV_007913 [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/226 (90%), Positives = 212/226 (93%), Gaps = 3/226 (1%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           MSFLFGK+KTPAELLRENKRMLDKSIREIERERQGLQ QEKKLI EIKKSAKQGQMGAVK
Sbjct: 1   MSFLFGKKKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIVEIKKSAKQGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQIEKFYKLKSQLQGV+LRIQTLKSTQAMG+AMKGVTKAMGQMNRQMNLP
Sbjct: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAMGQAMKGVTKAMGQMNRQMNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
           SLQKIMQEFERQNEKMEM  EVMGDA+DDALEGD+EEEETEELV+QVLDEIGIDI  EL+
Sbjct: 121 SLQKIMQEFERQNEKMEMTMEVMGDAVDDALEGDEEEEETEELVSQVLDEIGIDIKSELL 180

Query: 181 NAPSSTVAAPAVKGKVAQAEA---TGNDDGGIDSDLQARLDNLRRM 223
           NAPS  VAAPA K KVAQAEA   TGNDD GID+DLQARLDNLRRM
Sbjct: 181 NAPSGAVAAPAAKNKVAQAEATGTTGNDDSGIDNDLQARLDNLRRM 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242043420|ref|XP_002459581.1| hypothetical protein SORBIDRAFT_02g007010 [Sorghum bicolor] gi|241922958|gb|EER96102.1| hypothetical protein SORBIDRAFT_02g007010 [Sorghum bicolor]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/223 (88%), Positives = 212/223 (95%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           MSFLFGKRKTPAELLRENKRMLD+SIREIERERQGLQ QEKKLI+EIKK+AK+GQMGAVK
Sbjct: 1   MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQI KFY+LKSQLQGVSLR+QTLKSTQAMG+AMKGVTKAMGQMNRQ+NLP
Sbjct: 61  VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            LQ+IMQEFERQNE+MEMV+EVMGDAIDDALEGD+EEEETEELVNQVLDEIGIDINQELV
Sbjct: 121 GLQRIMQEFERQNERMEMVSEVMGDAIDDALEGDEEEEETEELVNQVLDEIGIDINQELV 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223
            APS+ VA PA  G+VAQAE TGN D GID+DLQARLDNLRRM
Sbjct: 181 GAPSAAVAQPASAGRVAQAEGTGNADSGIDADLQARLDNLRRM 223

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195620320|gb|ACG31990.1| charged multivesicular body protein 2a [Zea mays] gi|414588878|tpg|DAA39449.1| TPA: charged multivesicular body protein 2a [Zea mays]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/223 (87%), Positives = 212/223 (95%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           MSFLFGKRKTPAELLRENKRMLD+SIREIERERQGLQ QEKKLI+EIKK+AK+GQMGAVK
Sbjct: 1   MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQI KFY+LKSQLQGVSLR+QTLKSTQAMG+AMKGVTKAM QMNRQ+NLP
Sbjct: 61  VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMSQMNRQLNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            LQ+IMQEFERQNE+MEMV+EVMGDAIDDALEGD+EEEETEELVNQVLDEIGIDINQELV
Sbjct: 121 GLQRIMQEFERQNERMEMVSEVMGDAIDDALEGDEEEEETEELVNQVLDEIGIDINQELV 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223
            APS+TVA PA  G+VAQAE+ GN D GID+DLQARLDNLRRM
Sbjct: 181 GAPSATVAQPASVGRVAQAESAGNADSGIDADLQARLDNLRRM 223

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396352|ref|NP_565336.1| vacuolar protein sorting-associated protein 2-1 [Arabidopsis thaliana] gi|297835878|ref|XP_002885821.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|75206464|sp|Q9SKI2.2|VPS2A_ARATH RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 1; Short=AtVPS2-1; AltName: Full=Charged multivesicular body protein 2 homolog 1; AltName: Full=ESCRT-III complex subunit VPS2 homolog 1; AltName: Full=SNF7-like protein gi|20197786|gb|AAD25152.2| expressed protein [Arabidopsis thaliana] gi|20259350|gb|AAM13999.1| unknown protein [Arabidopsis thaliana] gi|297331661|gb|EFH62080.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|330250918|gb|AEC06012.1| vacuolar protein sorting-associated protein 2-1 [Arabidopsis thaliana]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/224 (91%), Positives = 215/224 (95%), Gaps = 1/224 (0%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M+ +FGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKK+AKQGQMGAVK
Sbjct: 2   MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 62  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
           SLQKIMQEFERQNEKMEMV+EVMGDAIDDALEGD+EEEETE+LV+QVLDEIGIDINQELV
Sbjct: 122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDD-GGIDSDLQARLDNLRRM 223
           NAPS  VA PA K KV QAEATG +D GGIDSDLQARLDNLR+M
Sbjct: 182 NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21617956|gb|AAM67006.1| unknown [Arabidopsis thaliana]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/224 (91%), Positives = 215/224 (95%), Gaps = 1/224 (0%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           M+ +FGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKK+AKQGQMGAVK
Sbjct: 1   MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
           SLQKIMQEFERQNEKMEMV+EVMGDAIDDALEGD+EEEETE+LV+QVLDEIGIDINQELV
Sbjct: 121 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDD-GGIDSDLQARLDNLRRM 223
           NAPS  VA PA K KV QAEATG +D GGIDSDLQARLDNLR+M
Sbjct: 181 NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194694646|gb|ACF81407.1| unknown [Zea mays] gi|414884079|tpg|DAA60093.1| TPA: charged multivesicular body protein 2a [Zea mays]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/223 (87%), Positives = 211/223 (94%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           MSFLFGKRKTPAELLRENKRMLD+SIREIERERQGLQ QEKKLI+EIKK+AK+GQMGAVK
Sbjct: 1   MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQI KFY+LKSQLQGVSLR+QTLKSTQAMG+AMKGVTKAM QMNRQ+NLP
Sbjct: 61  VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMAQMNRQLNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
            LQ+IMQEFERQNE+MEMV+EVMGDAIDDALEGD+EEEETEELVNQVLDEIGIDINQELV
Sbjct: 121 GLQRIMQEFERQNERMEMVSEVMGDAIDDALEGDEEEEETEELVNQVLDEIGIDINQELV 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223
            APS+ VA PA  G+VAQAE+ GN D GID+DLQARLDNLRRM
Sbjct: 181 GAPSAAVAQPASAGRVAQAESAGNADTGIDADLQARLDNLRRM 223

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122442|ref|XP_002330482.1| predicted protein [Populus trichocarpa] gi|222872416|gb|EEF09547.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/223 (95%), Positives = 219/223 (98%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           MSFLFGK+KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKKSAKQGQMGAVK
Sbjct: 1   MSFLFGKKKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLIAEIKKSAKQGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
           SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGD+EEEETE+LVNQVLDEIGID+NQELV
Sbjct: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDVNQELV 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223
           NAPSS VAAPA KGKVAQ E TGN+DGGIDSDLQARLDNLRRM
Sbjct: 181 NAPSSAVAAPAAKGKVAQVETTGNEDGGIDSDLQARLDNLRRM 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192912968|gb|ACF06592.1| breast adenocarcinoma marker-like [Elaeis guineensis]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/223 (87%), Positives = 208/223 (93%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
           MSFLFGK+KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKK+AKQGQMGAVK
Sbjct: 1   MSFLFGKKKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLITEIKKAAKQGQMGAVK 60

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDLIRTRHQI KFY LKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 61  VMAKDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120

Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
           +LQKIMQEFERQNE+MEMV+EVMGDAIDDALEGD+EEEETEELV+QVLDEIGIDIN ELV
Sbjct: 121 ALQKIMQEFERQNERMEMVSEVMGDAIDDALEGDEEEEETEELVSQVLDEIGIDINAELV 180

Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223
            AP+S VA P    KVAQAE  G +D  IDS+LQARLDNLR+M
Sbjct: 181 KAPTSAVAQPVAANKVAQAETAGTNDSAIDSELQARLDNLRKM 223

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2054612	225	VPS2.1 [Arabidopsis thaliana (	1.0	0.991	0.834	4e-90
UNIPROTKB|E2RIU2	222	CHMP2A "Uncharacterized protei	0.986	0.990	0.529	2.9e-55
UNIPROTKB|O43633	222	CHMP2A "Charged multivesicular	0.986	0.990	0.529	3.7e-55
MGI|MGI:1916203	222	Chmp2a "charged multivesicular	0.986	0.990	0.529	3.7e-55
RGD|1305050	222	Chmp2a "charged multivesicular	0.986	0.990	0.529	3.7e-55
DICTYBASE|DDB_G0292400	198	vps2B "SNF7 family protein" [D	0.869	0.979	0.597	6.1e-55
UNIPROTKB|Q3T0U5	222	CHMP2A "Chromatin modifying pr	0.986	0.990	0.529	9.9e-55
ZFIN|ZDB-GENE-040426-2922	220	bc2 "putative breast adenocarc	0.982	0.995	0.504	1.1e-53
WB|WBGene00012903	237	vps-2 [Caenorhabditis elegans	0.995	0.936	0.512	1.9e-53
ASPGD|ASPL0000001940	226	AN6898 [Emericella nidulans (t	0.995	0.982	0.502	4.9e-53

TAIR|locus:2054612 VPS2.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 187/224 (83%), Positives = 195/224 (87%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             M+ +FGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKK+AKQGQMGAVK
Sbjct:     2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct:    62 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
             SLQKIMQEFERQNEKMEMV+EVM                    V+QVLDEIGIDINQELV
Sbjct:   122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181

Query:   181 NAPSSTVAAPAVKGKVAQAEATGNDD-GGIDSDLQARLDNLRRM 223
             NAPS  VA PA K KV QAEATG +D GGIDSDLQARLDNLR+M
Sbjct:   182 NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225

GO:0015031 "protein transport" evidence=IEA;IMP

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005771 "multivesicular body" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|E2RIU2 CHMP2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 118/223 (52%), Positives = 157/223 (70%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             +MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
              +QKIM EFERQ E M+M  E+M                    V+QVLDE+G+ +  EL 
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180

Query:   181 NAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
             N PS+  + + A  GK A+A A+   D   D+DL+ RL NLRR
Sbjct:   181 NLPSTGGSLSVAASGKKAEAAASALVDA--DADLEERLKNLRR 221

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|O43633 CHMP2A "Charged multivesicular body protein 2a" [Homo sapiens (taxid:9606)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 118/223 (52%), Positives = 157/223 (70%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             +MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
              +QKIM EFERQ E M+M  E+M                    V+QVLDE+G+ +  EL 
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180

Query:   181 NAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
             N PS+  + + A  GK A+A A+   D   D+DL+ RL NLRR
Sbjct:   181 NLPSTGGSLSVAAGGKKAEAAASALADA--DADLEERLKNLRR 221

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

MGI|MGI:1916203 Chmp2a "charged multivesicular body protein 2A" [Mus musculus (taxid:10090)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 118/223 (52%), Positives = 157/223 (70%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             +MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
              +QKIM EFERQ E M+M  E+M                    V+QVLDE+G+ +  EL 
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180

Query:   181 NAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
             N PS+  + + A  GK A+A A+   D   D+DL+ RL NLRR
Sbjct:   181 NLPSTGGSLSVAAGGKKAEATASALADA--DADLEERLKNLRR 221

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

RGD|1305050 Chmp2a "charged multivesicular body protein 2A" [Rattus norvegicus (taxid:10116)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 118/223 (52%), Positives = 157/223 (70%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             +MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
              +QKIM EFERQ E M+M  E+M                    V+QVLDE+G+ +  EL 
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180

Query:   181 NAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
             N PS+  + + A  GK A+A A+   D   D+DL+ RL NLRR
Sbjct:   181 NLPSTGGSLSVAAGGKKAEATASALADA--DADLEERLKNLRR 221

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

DICTYBASE|DDB_G0292400 vps2B "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 116/194 (59%), Positives = 146/194 (75%)

Query:     3 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVM 62
             FLFGK+KTP E+LREN+R L+KS+REI+RER  LQ QEKK+I +IKK AKQGQM + K+M
Sbjct:     2 FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIM 61

Query:    63 AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 122
             AKDL+RTR+ I+KFY++K+QLQ VSLRIQTL+STQAM EAMKGVTKAM  MNRQMNLP  
Sbjct:    62 AKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQF 121

Query:   123 QKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELVNA 182
              KIM EFE+Q++KM+M  E+M                    +NQVLDEIGID+  +LV+A
Sbjct:   122 TKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDA 181

Query:   183 PSSTVAAPAVKGKV 196
             P++   + A K +V
Sbjct:   182 PTTVGTSVASKHQV 195

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q3T0U5 CHMP2A "Chromatin modifying protein 2A" [Bos taurus (taxid:9913)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 118/223 (52%), Positives = 156/223 (69%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             +MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
              +QKIM EFERQ E M+M  E+M                    V QVLDE+G+ +  EL 
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVAQVLDELGLSLTDELS 180

Query:   181 NAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
             N PS+  + + A  GK A+A A+   D   D+DL+ RL NLRR
Sbjct:   181 NLPSTGGSLSVAAGGKKAEATASALVDA--DADLEERLKNLRR 221

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040426-2922 bc2 "putative breast adenocarcinoma marker" [Danio rerio (taxid:7955)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 112/222 (50%), Positives = 156/222 (70%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             M  LFG+RKTP E+LR+N+R L++++R+++RERQ L+ QEKK+I++IKK AKQGQM AVK
Sbjct:     1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             +MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM  MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
              +QKIM EFERQ+E M+M  E+M                    V+QVLDE+G+ ++ EL 
Sbjct:   121 QIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELS 180

Query:   181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
             N P++  +     GK A+ + T  D    D+DL+ RL+NLRR
Sbjct:   181 NLPATGGSLSVAAGKKAEPQPTLAD---ADADLEERLNNLRR 219

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

WB|WBGene00012903 vps-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 121/236 (51%), Positives = 155/236 (65%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             M FLFG+RKTPAELLR+N+R L+K+IRE++RER  ++ QEKK+I++IK  AK+ QM +VK
Sbjct:     1 MDFLFGRRKTPAELLRQNQRALNKAIRELDRERARMEAQEKKVIADIKNMAKKNQMDSVK 60

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             VMAKDL+RTR  I+KF  +K+ +Q VSL++QTLKS  AM  AMKGVTKAM  MNRQ+NLP
Sbjct:    61 VMAKDLVRTRRYIKKFIVMKANIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLP 120

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
              +QKIM EFE+Q+E M+M  EVM                    VNQVLDE+GI + +E+ 
Sbjct:   121 QIQKIMMEFEKQSEIMDMKEEVMGDAIDDALGDAGDEEETDQIVNQVLDELGIQMGEEMA 180

Query:   181 NAPSSTVAAPA----VKGKVAQA--------EATGNDDGG--IDSDLQARLDNLRR 222
               PS+     A    + G+ A A           G   GG  +D DLQARLD LRR
Sbjct:   181 GLPSAAGGLNAGGERIGGRQAVAAGGSGGAHHGAGGAGGGNDVDDDLQARLDQLRR 236

GO:0015031 "protein transport" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

ASPGD|ASPL0000001940 AN6898 [Emericella nidulans (taxid:162425)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 112/223 (50%), Positives = 151/223 (67%)

Query:     1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
             + + FGKR TPAE LR+++R LD++ RE++RER  L+ QEKKLI +IKKSAK GQ+GA K
Sbjct:     4 VEWAFGKRMTPAERLRKHQRALDRTQRELDRERTKLENQEKKLIQDIKKSAKNGQIGACK 63

Query:    61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
             + AKDL+RTR  I+KFY++++QLQ +SLRIQT++S + M ++MKG T  +G MNRQMNLP
Sbjct:    64 IQAKDLVRTRRYIQKFYQMRTQLQAISLRIQTVRSNEQMMQSMKGATMLLGSMNRQMNLP 123

Query:   121 SLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINQELV 180
             +LQ+I  EFER+N+ M+   E+M                    V +VLDEIG+D++Q L 
Sbjct:   124 ALQRIAMEFERENDIMDQRQEMMDDAIDEATGIEGEEEEGEDIVKEVLDEIGVDLSQALG 183

Query:   181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSD-LQARLDNLRR 222
               PS        +G+VAQA   G   G  D D LQARLD+LRR
Sbjct:   184 ETPSGIQKESVSEGRVAQAIGAGGAGGASDDDDLQARLDSLRR 226

GO:0003674 "molecular_function" evidence=ND

GO:0043936 "asexual sporulation resulting in formation of a cellular spore" evidence=IEA

GO:0045053 "protein retention in Golgi apparatus" evidence=IEA

GO:0070676 "intralumenal vesicle formation" evidence=IEA

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0000815 "ESCRT III complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DFS6	CHM2A_XENTR	No assigned EC number	0.56	0.9686	0.9818	yes	no
Q54DB1	CM2A2_DICDI	No assigned EC number	0.6391	0.8699	0.9797	yes	no
Q6IP52	CHM2A_XENLA	No assigned EC number	0.56	0.9686	0.9818	N/A	no
P36108	DID4_YEAST	No assigned EC number	0.4755	0.9865	0.9482	yes	no
Q5ZHN1	CHM2A_CHICK	No assigned EC number	0.5783	0.8295	0.8409	yes	no
O43633	CHM2A_HUMAN	No assigned EC number	0.6	0.8295	0.8333	yes	no
Q9SKI2	VPS2A_ARATH	No assigned EC number	0.9151	1.0	0.9911	yes	no
Q7ZW25	CHM2A_DANRE	No assigned EC number	0.5495	0.9820	0.9954	yes	no
Q9DB34	CHM2A_MOUSE	No assigned EC number	0.5675	0.9910	0.9954	yes	no
O14177	DID4_SCHPO	No assigned EC number	0.4337	0.9103	0.9666	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam03357	169	pfam03357, Snf7, Snf7	1e-43
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	2e-17
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	0.001

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  144 bits (365), Expect = 1e-43
 Identities = 62/171 (36%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 17  ENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKF 76
           E    L K+IRE++++++ L+ + KKL +EIKK AK+G   A  ++ K   R   Q+++ 
Sbjct: 1   EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQL 60

Query: 77  YKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKM 136
               + L+ V + I+  K+ Q +  AMKG  KAM  MN+ M++  +  +M E E Q EK 
Sbjct: 61  DGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKA 120

Query: 137 EMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAPSSTV 187
           + ++E++ D +DDA E D  EEE +  ++ +LDEIG +   EL +APS  +
Sbjct: 121 DEISEMLSDTLDDADEED--EEELDAELDALLDEIGDEELVELPSAPSGAL 169

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 10/198 (5%)

Query: 36  LQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE--KFYKLKSQLQGVSLRIQTL 93
           L+ Q KKL+ E+K+ AK+GQ+   ++  K   R R   E  K  K +S+L     R+Q+L
Sbjct: 5   LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSL 64

Query: 94  KSTQAMGEAMKGVTKAMGQMNRQMN-LPSLQKIMQEFERQNEKMEMVT---EVMGDAIDD 149
            +       M+ V+  M +    MN L S+++IMQ FE Q   +E+V    E M + +D 
Sbjct: 65  DTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDV 124

Query: 150 ALEGD--DEEEETEELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVA-QAEATGNDD 206
            +     ++ EE +ELVN+VL EIG+++++   + P++ V   +V   V+ +A     + 
Sbjct: 125 VVGDPVLEDLEELDELVNKVLPEIGLELDESEQSLPANVVENGSVPAAVSPEARKILEEA 184

Query: 207 GGIDSD-LQARLDNLRRM 223
             I  D LQ RL  L  +
Sbjct: 185 EKIAEDRLQERLRELPAL 202

Length = 204

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 35/180 (19%), Positives = 79/180 (43%), Gaps = 10/180 (5%)

Query: 1   MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLIS----------EIKKS 50
           M F FGK+K  +E     K+  D+  + I + R+ +   EKK +           E K+ 
Sbjct: 1   MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQK 60

Query: 51  AKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 110
            +Q QM   K++ K       +IE     +  L+   + ++ +   +    A+       
Sbjct: 61  VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTH 120

Query: 111 GQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDE 170
            ++N ++N   ++KI+   +   +  E + + +   + + ++ D+ ++E + L  Q ++E
Sbjct: 121 KKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTMEE 180

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	100.0
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	100.0
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	100.0
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.94
KOG1656	221	consensus Protein involved in glucose derepression	99.94
PTZ00464	211	SNF-7-like protein; Provisional	99.93
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.91
KOG2910	209	consensus Uncharacterized conserved protein predic	99.85
KOG1655	218	consensus Protein involved in vacuolar protein sor	99.75
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.42
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.39
COG5491	204	VPS24 Conserved protein implicated in secretion [C	98.45
PTZ00464	211	SNF-7-like protein; Provisional	98.38
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	98.37
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	98.2
PRK10698	222	phage shock protein PspA; Provisional	98.07
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.69
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.68
KOG1656	221	consensus Protein involved in glucose derepression	97.65
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	97.45
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	97.36
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	97.0
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	96.37
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	93.78
KOG1655	218	consensus Protein involved in vacuolar protein sor	92.82
COG1937	89	Uncharacterized protein conserved in bacteria [Fun	90.74
KOG2910	209	consensus Uncharacterized conserved protein predic	88.74
PF02583	85	Trns_repr_metal: Metal-sensitive transcriptional r	88.36
PRK15039	90	transcriptional repressor RcnR to maintain nickel	87.52
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	85.28
KOG2911	439	consensus Uncharacterized conserved protein [Funct	85.14
PRK11352	91	regulator protein FrmR; Provisional	83.88

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-52  Score=335.41  Aligned_cols=222  Identities=64%  Similarity=0.897  Sum_probs=202.9

Q ss_pred             CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389            1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLK   80 (223)
Q Consensus         1 ~~~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~   80 (223)
                      |. +||+++||.|.+|+++|.|.+++|+|+|+..+++.++|++..+||+.+|.|+..++||+|+++||.|+|+.+++.++
T Consensus         1 m~-lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~k   79 (224)
T KOG3230|consen    1 MD-LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMK   79 (224)
T ss_pred             CC-cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHH
Q 043389           81 SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEET  160 (223)
Q Consensus        81 ~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~  160 (223)
                      ++|.+|+.++++.+++..++.+|++++++|..||+.||||+++++|.+|++|++.|++.+|||+++++++++++++|||.
T Consensus        80 aqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEt  159 (224)
T KOG3230|consen   80 AQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEET  159 (224)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             HHHHHHHHHHhcchhhhhhccCCCCCCCccccch-hhhhhhccC-CCCCCcHHHHHHHHHHhhcC
Q 043389          161 EELVNQVLDEIGIDINQELVNAPSSTVAAPAVKG-KVAQAEATG-NDDGGIDSDLQARLDNLRRM  223 (223)
Q Consensus       161 d~l~~qvldE~~~~~~~~l~~~P~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~l~~RL~~Lr~~  223 (223)
                      |++|+|||||+|++++.+|.++|.+...+|.... ...+++.++ ++....+|||++||++||+.
T Consensus       160 d~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk~  224 (224)
T KOG3230|consen  160 DDLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRKD  224 (224)
T ss_pred             HHHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhcC
Confidence            9999999999999999999999996665554321 111222222 12246799999999999974

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-46  Score=302.23  Aligned_cols=219  Identities=26%  Similarity=0.443  Sum_probs=190.0

Q ss_pred             ccCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389            4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKS   81 (223)
Q Consensus         4 ~Fg~--~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~   81 (223)
                      +||+  +|+|+|++|+|++.||+..|.|||+++.+++++++.+..||+++|+||..+|++||+++++.|+.+.+||..++
T Consensus         3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA   82 (227)
T KOG3229|consen    3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA   82 (227)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4554  38999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHH
Q 043389           82 QLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETE  161 (223)
Q Consensus        82 ~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d  161 (223)
                      +|+||.++|..+.++..++++|++++.+|+.+|+++.+|++..||.+|+++|++.|+|+||++++|+++.|.+++++++|
T Consensus        83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d  162 (227)
T KOG3229|consen   83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD  162 (227)
T ss_pred             HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             HHHHHHHHHhcchhhhhhccCCCCC----CCccccchhhhhhhccCCCCCCcHHHHHHHHHHhhc
Q 043389          162 ELVNQVLDEIGIDINQELVNAPSST----VAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR  222 (223)
Q Consensus       162 ~l~~qvldE~~~~~~~~l~~~P~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~  222 (223)
                      ++|++||.+|...-.+.+|.+|+..    .+.++.++....++..+.+..++..++..||++||+
T Consensus       163 eEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs  227 (227)
T KOG3229|consen  163 EEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS  227 (227)
T ss_pred             HHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence            9999999999877666666666544    122222222111111111112456788889999995

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-42  Score=272.00  Aligned_cols=207  Identities=39%  Similarity=0.585  Sum_probs=194.5

Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389            3 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQ   82 (223)
Q Consensus         3 ~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~   82 (223)
                      +|||| |||+|..|++.|.||++.|.|+|+.++++++|++|+.+||+.++.||.++||+||+++|..|++..+-+...++
T Consensus         2 niF~K-ktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~k   80 (208)
T KOG3231|consen    2 NIFKK-KTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSK   80 (208)
T ss_pred             CcccC-CCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            68987 69999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHH
Q 043389           83 LQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEE  162 (223)
Q Consensus        83 L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~  162 (223)
                      +.+++.|-..+.++.+++++|...++.|+.+|+.|+|+++..+|.+|+...++|++.+|||+|++++.+|..++++|.++
T Consensus        81 i~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~a  160 (208)
T KOG3231|consen   81 ITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQA  160 (208)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcchhhhhhccCCCCCCCccccchhhhhhhccCCCCCCcHHHHHHHHHHhhc
Q 043389          163 LVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR  222 (223)
Q Consensus       163 l~~qvldE~~~~~~~~l~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~  222 (223)
                      +|++||||+|+++++++.++|+....+.++++            ....+||++.|++||.
T Consensus       161 iVNqVLDEIGIEisgKma~~P~a~s~~~~st~------------kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  161 IVNQVLDEIGIEISGKMAKAPSARSLPSASTS------------KATISDIERQLAALRS  208 (208)
T ss_pred             HHHHHHHHhhhhhcchhccCCccCCCCccccC------------CCcHHHHHHHHHHhcC
Confidence            99999999999999999999974433322221            2568889999999984

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-38  Score=251.05  Aligned_cols=199  Identities=27%  Similarity=0.445  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           13 ELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT   92 (223)
Q Consensus        13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~   92 (223)
                      ..+....|+|+++.++|.|+..+|+++||.++.++|+|+++||.+.|||||.++||+|++..+|+++.+++|+|..++++
T Consensus         5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT   84 (203)
T KOG3232|consen    5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT   84 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhc
Q 043389           93 LKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIG  172 (223)
Q Consensus        93 a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~  172 (223)
                      |..+..++++|.++++.|....+.||+++|..+|+.|+.+|+++++..+.|.++|+++..-+.|.++||.|+++|+||+|
T Consensus        85 avtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaG  164 (203)
T KOG3232|consen   85 AVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAG  164 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999887777899999999999999999


Q ss_pred             chhhhhhccCCCCCCCccccchhhhhhhccCCCCCCcHHHHHHHHHHhhcC
Q 043389          173 IDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM  223 (223)
Q Consensus       173 ~~~~~~l~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~~  223 (223)
                      ++++..||....++.+.+  ++    ++      ..++|+|.+||++||..
T Consensus       165 lElnq~lp~~~~~a~~~~--t~----~~------~~e~d~L~qRLaaLR~~  203 (203)
T KOG3232|consen  165 LELNQELPQNVVPAISVK--TS----AV------VDEEDDLTQRLAALRAR  203 (203)
T ss_pred             hhhhhcCCCCCCCCcCCC--Cc----cc------cchhhHHHHHHHHHhcC
Confidence            999988875321111111  11    11      23459999999999974

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.94  E-value=6.6e-27  Score=188.88  Aligned_cols=168  Identities=33%  Similarity=0.489  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           17 ENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKST   96 (223)
Q Consensus        17 ~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~   96 (223)
                      ++++.|+.+++.|++.+.+|+.+.+++..+|++++++|+...|++|++..++.+++..+++....+|+++..+|+++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhcchh-
Q 043389           97 QAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDI-  175 (223)
Q Consensus        97 ~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~~~~-  175 (223)
                      ..++.+|+.++++|+.+|+.+++++|..+|++|.++++.+++++++|++.++..  ++++++|++++++++++|++.+. 
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~  158 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE  158 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999988654  23466789999999999999988 


Q ss_pred             -hhhhccCCCCC
Q 043389          176 -NQELVNAPSST  186 (223)
Q Consensus       176 -~~~l~~~P~~~  186 (223)
                       ...||++|+++
T Consensus       159 ~~~~lp~~P~~~  170 (171)
T PF03357_consen  159 EKQQLPSVPSTE  170 (171)
T ss_dssp             -SS-SS---HH-
T ss_pred             ccccCCcCCCCC
Confidence             77888888764

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.1e-25  Score=177.50  Aligned_cols=181  Identities=22%  Similarity=0.367  Sum_probs=142.7

Q ss_pred             CccccCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 043389            1 MSFLFGKR-----KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEK   75 (223)
Q Consensus         1 ~~~~Fg~~-----~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~   75 (223)
                      |++|||+.     +||++.+.    .||.+...|++   +-+..++++..++...+++.-..+-|...+++-|+|.+..+
T Consensus         4 ~~~~FG~~k~~~~~t~~eaI~----kLrEteemL~K---Kqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~q   76 (221)
T KOG1656|consen    4 FSRLFGGMKQEAKPTPQEAIQ----KLRETEEMLEK---KQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQ   76 (221)
T ss_pred             HHHHhCcccccCCCChHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            68999974     56766665    69999999864   55555666777766645544444445544555666666778


Q ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhc--cc
Q 043389           76 FYKLKSQLQGVSLR---IQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAID--DA  150 (223)
Q Consensus        76 l~~~~~~L~~v~~q---l~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~--~~  150 (223)
                      |.+....|.+|..|   |++|+.+..|..+|+.++++||.+++.||+++|+.+|+++.+|.+.+..|+++|+.+++  ..
T Consensus        77 L~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~  156 (221)
T KOG1656|consen   77 LAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGAD  156 (221)
T ss_pred             HHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence            88999999999988   77899999999999999999999999999999999999999999999999999999986  45


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhcchhhh---hhccCCCCCCC
Q 043389          151 LEGDDEEEETEELVNQVLDEIGIDINQ---ELVNAPSSTVA  188 (223)
Q Consensus       151 ~d~~~~eee~d~l~~qvldE~~~~~~~---~l~~~P~~~~~  188 (223)
                      +|++++..|+|+|-+..|+.-.+++..   .||++|+...|
T Consensus       157 ~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~~lP  197 (221)
T KOG1656|consen  157 FDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPSIALP  197 (221)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccC
Confidence            888888888888888888877666543   35555554443

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.93  E-value=2.4e-24  Score=179.93  Aligned_cols=186  Identities=18%  Similarity=0.303  Sum_probs=147.6

Q ss_pred             CccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH----H
Q 043389            1 MSFLFGKRK-TPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE----K   75 (223)
Q Consensus         1 ~~~~Fg~~~-~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~----~   75 (223)
                      |++|||+++ .|+..++++...+|.....|++.+.+|+.+..+.+..+++....+. .+.|..|..++|+||.++    +
T Consensus         1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~   79 (211)
T PTZ00464          1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDM   79 (211)
T ss_pred             CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999864 6778888998999999999999999999988888877776543222 346778889999999765    5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCC
Q 043389           76 FYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDD  155 (223)
Q Consensus        76 l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~  155 (223)
                      +.....+|+.+.+.|+++..+..|+.+|+.++++|+.+|+.|++++|+.+|+++.++++..+.|+++|+.+++..  ++.
T Consensus        80 l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~  157 (211)
T PTZ00464         80 MMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDI  157 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCC
Confidence            667777888888999999999999999999999999999999999999999999999999999999999876522  123


Q ss_pred             cHHHHHHHHHHHHHHhcchh----hhhhccCCCCCCCc
Q 043389          156 EEEETEELVNQVLDEIGIDI----NQELVNAPSSTVAA  189 (223)
Q Consensus       156 ~eee~d~l~~qvldE~~~~~----~~~l~~~P~~~~~~  189 (223)
                      +++|++++++.+..|...+.    -...|++|+..+|.
T Consensus       158 DEdELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~  195 (211)
T PTZ00464        158 DEDEMLGELDALDFDMEKEADASYLADALAVPGTKLPD  195 (211)
T ss_pred             CHHHHHHHHHHHHHHHhccccchhhhccccCCCCCCCC
Confidence            45566666666665543322    23456666665543

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.91  E-value=4.7e-22  Score=163.06  Aligned_cols=166  Identities=18%  Similarity=0.322  Sum_probs=133.6

Q ss_pred             CccccCCCC-Ch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 043389            1 MSFLFGKRK-TP---------AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTR   70 (223)
Q Consensus         1 ~~~~Fg~~~-~p---------~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~r   70 (223)
                      |+|||||++ .|         .+.+.+++..||.++..|++...+|+....++...+|+++++|+...    |..++|+|
T Consensus         1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrK   76 (191)
T PTZ00446          1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRK   76 (191)
T ss_pred             CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHH
Confidence            789999863 34         13577888999999999999999999999999999999999998554    55577777


Q ss_pred             HHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhh
Q 043389           71 HQIE-KFYKLKSQLQGV---SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDA  146 (223)
Q Consensus        71 k~~~-~l~~~~~~L~~v---~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~  146 (223)
                      |++. ++.++.+++..+   ...|++++.+..|+.+|+.++++|+.+|+.|++++|+.+|+++.++++..+.|+++++.+
T Consensus        77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~  156 (191)
T PTZ00446         77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFN  156 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7664 444555555555   556889999999999999999999999999999999999999999999999999999976


Q ss_pred             hcccCCCCCcHHHHHHHHHHHHHH
Q 043389          147 IDDALEGDDEEEETEELVNQVLDE  170 (223)
Q Consensus       147 l~~~~d~~~~eee~d~l~~qvldE  170 (223)
                      +.+..|+++.++|++++.+.-+++
T Consensus       157 ~~~~~DEdELe~ELe~Le~e~l~~  180 (191)
T PTZ00446        157 LLNNVDDDEIDKELDLLKEQTMEE  180 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            544455555555555555544443

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=99.85  E-value=5.6e-19  Score=142.23  Aligned_cols=178  Identities=15%  Similarity=0.279  Sum_probs=150.4

Q ss_pred             CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-HH
Q 043389            1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFY-KL   79 (223)
Q Consensus         1 ~~~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~-~~   79 (223)
                      ||.+|||+ .+-.-...++..|+.+-+.|.+..+++++.....+..+|++++.|....|+.    ++++++++..|+ ++
T Consensus         1 MG~lfsK~-~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAll----lLKkKryQE~Ll~qt   75 (209)
T KOG2910|consen    1 MGNLFSKK-SRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALL----LLKKKRYQEELLTQT   75 (209)
T ss_pred             CCccccCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH----HHHHHHHHHHHHHHH
Confidence            89999983 3444456678899999999999999999999999999999999999888776    689999988775 77


Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCc
Q 043389           80 KSQLQGVS---LRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDE  156 (223)
Q Consensus        80 ~~~L~~v~---~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~  156 (223)
                      ..+|..++   +.|+.+.....|+.+++.++.+++++|+.|+++.|+.+|++-.+.+++.+.|++|+++.|..     ++
T Consensus        76 ~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~d  150 (209)
T KOG2910|consen   76 DNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----ED  150 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----cc
Confidence            77777766   45778999999999999999999999999999999999999999999999999999999984     34


Q ss_pred             HHHHHHHHHHHHHHhcchhhhhhccCCCCCCCcc
Q 043389          157 EEETEELVNQVLDEIGIDINQELVNAPSSTVAAP  190 (223)
Q Consensus       157 eee~d~l~~qvldE~~~~~~~~l~~~P~~~~~~~  190 (223)
                      ++++.++++.+..|...+  .++|.+|+..++.|
T Consensus       151 Eddi~~EldaLese~~~e--~e~PevPs~ep~lP  182 (209)
T KOG2910|consen  151 EDDILAELDALESELEVE--AELPEVPSTEPELP  182 (209)
T ss_pred             HHHHHHHHHHHHHHhhhh--hhcCCCCCCCCCcc
Confidence            566777777777666443  66899998854433

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.2e-16  Score=125.64  Aligned_cols=170  Identities=21%  Similarity=0.346  Sum_probs=152.6

Q ss_pred             CccccCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH----
Q 043389            1 MSFLFGKR--KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE----   74 (223)
Q Consensus         1 ~~~~Fg~~--~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~----   74 (223)
                      |++|||++  +.|-..+.+|+..+.+....++..|.+|+.+--+++.+|++.-...-..+.|.-|-.+++.||+++    
T Consensus         1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d   80 (218)
T KOG1655|consen    1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKD   80 (218)
T ss_pred             CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            78999975  457889999999999999999999999999999999999999666667888999999999999765    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCC
Q 043389           75 KFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGD  154 (223)
Q Consensus        75 ~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~  154 (223)
                      .|.+....|+.+.+..++...+..++.+|+.+++.|+...+.+++++|+.+-+++..-|+..++|+|+++..++..   +
T Consensus        81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p---e  157 (218)
T KOG1655|consen   81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP---D  157 (218)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---C
Confidence            6778888999999999999999999999999999999999999999999999999999999999999999988754   2


Q ss_pred             CcHHHHHHHHHHHHHHhcc
Q 043389          155 DEEEETEELVNQVLDEIGI  173 (223)
Q Consensus       155 ~~eee~d~l~~qvldE~~~  173 (223)
                      .++++++.+++.+.+|...
T Consensus       158 ide~dL~aELdaL~~E~d~  176 (218)
T KOG1655|consen  158 IDEADLDAELDALGQELDM  176 (218)
T ss_pred             cCHHHHHHHHHHHHhHhhc
Confidence            4677888888888777643

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.42  E-value=1.2e-11  Score=102.41  Aligned_cols=185  Identities=25%  Similarity=0.327  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           29 IERERQGLQTQEKKLISEIKKSAKQ--GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGV  106 (223)
Q Consensus        29 Ldr~~~~le~~ekkl~~~iK~a~k~--g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~  106 (223)
                      +++++.++-.+.+...+......++  ......+++++.+++.++++.+|...+++|.++...+.....+..+++.|..+
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a   84 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKA   84 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            5555666666655555555544432  25677888889999888888888888888887777777666666665555555


Q ss_pred             HHHHHHHHhcCC-hhHHHHHHHHHHHHHHHhHhHH---HHHhhhhcccC--CCCCcHHHHHHHHHHHHHHhcchhhhhhc
Q 043389          107 TKAMGQMNRQMN-LPSLQKIMQEFERQNEKMEMVT---EVMGDAIDDAL--EGDDEEEETEELVNQVLDEIGIDINQELV  180 (223)
Q Consensus       107 ~~~mk~~n~~m~-~~kv~~~M~ef~~e~~~~~~~~---e~m~~~l~~~~--d~~~~eee~d~l~~qvldE~~~~~~~~l~  180 (223)
                      +.       .|+ ++.|.++|+.|..++..++...   +.|.+.++...  +..++.+++|++++.|++|+|+++.....
T Consensus        85 ~~-------~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~  157 (204)
T COG5491          85 AM-------YMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ  157 (204)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence            44       455 6778888888888888777777   56655444444  34468889999999999999999986555


Q ss_pred             cCCCCCCC---ccccchhhhhhhccCC-CCCCcHHHHHHHHHHhhc
Q 043389          181 NAPSSTVA---APAVKGKVAQAEATGN-DDGGIDSDLQARLDNLRR  222 (223)
Q Consensus       181 ~~P~~~~~---~~~~~~~~~~~~~~~~-~~~~~~d~l~~RL~~Lr~  222 (223)
                      ++|...+.   .|+..+  +++..... .....++.|..||..|+.
T Consensus       158 ~~~~~~~~~~~~~a~~~--~ea~~ileea~~~aE~~l~e~~~~L~~  201 (204)
T COG5491         158 SLPANVVENGSVPAAVS--PEARKILEEAEKIAEDRLQERLRELPA  201 (204)
T ss_pred             cchhhhhcccccccccC--hhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence            55542111   111000  01110000 012458999999999985

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=6.3e-11  Score=106.64  Aligned_cols=158  Identities=11%  Similarity=0.147  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           13 ELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT   92 (223)
Q Consensus        13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~   92 (223)
                      -.+.-....|..+.-.|.|++..|+.+-++...+++.+.+.|....|..|++.-.+.-|-..++.....+|.+|-.+|.+
T Consensus       229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~  308 (439)
T KOG2911|consen  229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDN  308 (439)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            34455667899999999999999999999999999999999998888888777777777788888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHh
Q 043389           93 LKSTQAMGEAMKGVTKAMGQMNR-QMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEI  171 (223)
Q Consensus        93 a~~~~~~~~am~~~~~~mk~~n~-~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~  171 (223)
                      +.++.-|..|++.++.+||.++. ...+++|..+|+++.+-++...+++++|+.+.-+..|  ..+++++.+++.+..+.
T Consensus       309 s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d--~~de~lEkEL~~L~~D~  386 (439)
T KOG2911|consen  309 SQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNID--FEDEDLEKELEDLEADE  386 (439)
T ss_pred             hcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCc--cchHHHHHHHHHHHhcc
Confidence            99999999999999999999998 6789999999999999999999999999998766543  24566777766666554


Q ss_pred             c
Q 043389          172 G  172 (223)
Q Consensus       172 ~  172 (223)
                      .
T Consensus       387 ~  387 (439)
T KOG2911|consen  387 K  387 (439)
T ss_pred             c
Confidence            3

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=98.45  E-value=1.4e-05  Score=66.46  Aligned_cols=132  Identities=26%  Similarity=0.304  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           36 LQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE--KFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM  113 (223)
Q Consensus        36 le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~--~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~  113 (223)
                      +++..++.....|...++|.....++-.+.-+++|....  ++....++|+.+..+|++...+....-+|..++..    
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~----   80 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGD----   80 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            677788888888888888877766665566666776666  77899999999999999988877766666654433    


Q ss_pred             HhcCChhHHHHHHHHHHH------HHHHhHhHHHHHh---hhhcccCCCCC--cHHHHHHHHHHHHHHhcchhh
Q 043389          114 NRQMNLPSLQKIMQEFER------QNEKMEMVTEVMG---DAIDDALEGDD--EEEETEELVNQVLDEIGIDIN  176 (223)
Q Consensus       114 n~~m~~~kv~~~M~ef~~------e~~~~~~~~e~m~---~~l~~~~d~~~--~eee~d~l~~qvldE~~~~~~  176 (223)
                         +  ..-..+|+++..      .++.+...=|.+-   +++....+...  +..+.++.++..+..+.-+++
T Consensus        81 ---~--~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~  149 (204)
T COG5491          81 ---M--AKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIG  149 (204)
T ss_pred             ---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhh
Confidence               3  445555554443      3333333333333   34433343333  233444444555544433333

>PTZ00464 SNF-7-like protein; Provisional

Probab=98.38  E-value=0.00027  Score=59.40  Aligned_cols=165  Identities=15%  Similarity=0.138  Sum_probs=108.6

Q ss_pred             CCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 043389            7 KRKTPAELLRE---NKRMLDKSIREIERERQGLQTQEKKL--------ISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEK   75 (223)
Q Consensus         7 ~~~~p~e~~r~---~~~~lr~~~r~Ldr~~~~le~~ekkl--------~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~   75 (223)
                      +++++.+.+..   -...|.+.+..|+++..++.+.-++.        +..++.++++.     |.|=+++-+.-.+..+
T Consensus        12 p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~K-----K~~E~ql~~l~~q~~n   86 (211)
T PTZ00464         12 PKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQK-----RMYQNQQDMMMQQQFN   86 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence            55777666554   44557777778888877776555433        55556666544     5566667788888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHhHhHHHHHh--hhhcccCC
Q 043389           76 FYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFE-RQNEKMEMVTEVMG--DAIDDALE  152 (223)
Q Consensus        76 l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~-~e~~~~~~~~e~m~--~~l~~~~d  152 (223)
                      |......++.+........++..-+.+|+...+-|    ..=+++.+..-|.+.. .+-+..++++.-+.  +.++    
T Consensus        87 leq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i----~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~D----  158 (211)
T PTZ00464         87 MDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL----NVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDID----  158 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC----
Confidence            99999999999999999999999999999966655    2344566654444444 44444467766553  3333    


Q ss_pred             CCCcHHHHHHHHHHHHHHhc---chhhhhhccCCC
Q 043389          153 GDDEEEETEELVNQVLDEIG---IDINQELVNAPS  184 (223)
Q Consensus       153 ~~~~eee~d~l~~qvldE~~---~~~~~~l~~~P~  184 (223)
                      +++.++|++++...+..|..   ++-...+|+.+.
T Consensus       159 EdELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~  193 (211)
T PTZ00464        159 EDEMLGELDALDFDMEKEADASYLADALAVPGTKL  193 (211)
T ss_pred             HHHHHHHHHHHHHHHhccccchhhhccccCCCCCC
Confidence            35688889988887654433   333334555433

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=98.37  E-value=9.3e-05  Score=61.14  Aligned_cols=143  Identities=11%  Similarity=0.098  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           21 MLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAK-----DLIRTRHQIEKFYKLKSQLQGVSLRIQTLKS   95 (223)
Q Consensus        21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak-----~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~   95 (223)
                      ....+|-.|...+..|++.++.+..+|.+...     .||.+++     .+++.=+....|.....++++....|+.+..
T Consensus        24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~-----~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~   98 (191)
T PTZ00446         24 EIYKAILKNREAIDALEKKQVQVEKKIKQLEI-----EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI   98 (191)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999999977653     2333221     1222223344555667777777777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhHHHHHH--HHHH---HHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 043389           96 TQAMGEAMKGVTKAMGQMNRQMNLPSLQKIM--QEFE---RQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDE  170 (223)
Q Consensus        96 ~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M--~ef~---~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE  170 (223)
                      +.+.+..=..+..+|+..++.+  .++.+-|  ++++   .++...-..++=|+++++....++.+++|++++++.+..|
T Consensus        99 ~iE~a~~~~ev~~aLk~g~~aL--K~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e  176 (191)
T PTZ00446         99 NLENMHLHKIAVNALSYAANTH--KKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ  176 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence            8777777777888999998887  5555433  3333   3444444445566778886644567999999999988775

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=0.00045  Score=57.15  Aligned_cols=167  Identities=18%  Similarity=0.222  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 043389           11 PAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKS---QLQGVS   87 (223)
Q Consensus        11 p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~---~L~~v~   87 (223)
                      |..-+++..+.+++-+|+=-|++.+.=+.-+.++.++++++|..-..+=+.      -.|-....+.+..-   +|-.-.
T Consensus         8 ~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~------t~~iLAKEiv~srk~v~Rly~sK   81 (227)
T KOG3229|consen    8 PGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKD------TCRILAKEIVQSRKAVKRLYESK   81 (227)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHHhH
Confidence            566788888999999999888888888888999999999998544333332      23333334444333   333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH------H---HHHHHhHhHHHHHhhhhcccCCCCCcHH
Q 043389           88 LRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEF------E---RQNEKMEMVTEVMGDAIDDALEGDDEEE  158 (223)
Q Consensus        88 ~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef------~---~e~~~~~~~~e~m~~~l~~~~d~~~~ee  158 (223)
                      .+|.+..      -.|+..-..+.-.+.+-+-..|-+.|+.+      .   .++.+-=+...+|.+.++..++..++.+
T Consensus        82 AqlnSv~------M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~e  155 (227)
T KOG3229|consen   82 AQLNSVS------MQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSE  155 (227)
T ss_pred             HHHhhHH------HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            4444422      23333333333333333333333333332      2   2233333455778888899999888888


Q ss_pred             HHHHHHHHHHHHhcchhhh-hhccCCCCCCCc
Q 043389          159 ETEELVNQVLDEIGIDINQ-ELVNAPSSTVAA  189 (223)
Q Consensus       159 e~d~l~~qvldE~~~~~~~-~l~~~P~~~~~~  189 (223)
                      |.++.++.-.+.+...+.+ .++.+|.+.-..
T Consensus       156 emeEe~deEVdkIL~~it~~~~~~~p~a~~~~  187 (227)
T KOG3229|consen  156 EMEEEADEEVDKILTEITGEKAGEAPLAVTAT  187 (227)
T ss_pred             hHHHHHHHHHHHHHHHHhccccccCCcchHHH
Confidence            9999999999999877753 466666554433

>PRK10698 phage shock protein PspA; Provisional

Probab=98.07  E-value=0.00097  Score=56.51  Aligned_cols=131  Identities=11%  Similarity=0.250  Sum_probs=97.3

Q ss_pred             CCCChHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH-------HHHH
Q 043389            7 KRKTPAELLRENKRMLDKS--------------IREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV-------MAKD   65 (223)
Q Consensus         7 ~~~~p~e~~r~~~~~lr~~--------------~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari-------~Ak~   65 (223)
                      +-.+|...++...++|+..              .+.++|++..++....+...++..|+.+|+-+-||.       |+..
T Consensus        21 kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~  100 (222)
T PRK10698         21 KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDL  100 (222)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3468876666666555543              467888888888889999999999999999998887       6666


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhH
Q 043389           66 LIRTRHQIE----KFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKME  137 (223)
Q Consensus        66 ~vr~rk~~~----~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~  137 (223)
                      +-..+.++.    .+..+..++..+...|..+.+-..+..+=..++.+..++|..+.--.....|..|++--++.+
T Consensus       101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~  176 (222)
T PRK10698        101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRID  176 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence            666666554    334667777778888888888888888888888888888888766666666666655444443

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.69  E-value=0.01  Score=49.80  Aligned_cols=138  Identities=20%  Similarity=0.299  Sum_probs=88.3

Q ss_pred             CCChHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 043389            8 RKTPAELLRENKRMLDKSI--------------REIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQI   73 (223)
Q Consensus         8 ~~~p~e~~r~~~~~lr~~~--------------r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~   73 (223)
                      -.+|...++..++++...+              +.+++++..++....+...++..|+++|+-+.|+.++..........
T Consensus        21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~  100 (221)
T PF04012_consen   21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA  100 (221)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3678766666655554443              66777788888888888889999999999999988766666655543


Q ss_pred             H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHhHhH
Q 043389           74 E-----------KFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM---NLPSLQKIMQEFERQNEKMEMV  139 (223)
Q Consensus        74 ~-----------~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m---~~~kv~~~M~ef~~e~~~~~~~  139 (223)
                      .           .+..++.++..+..+|..+..-..+..+-..++.+-..+|..+   ++......++.++...+.+.-.
T Consensus       101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~  180 (221)
T PF04012_consen  101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEAR  180 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHH
Confidence            2           3334445555566667777777777777666666666666544   4444444444444444444444


Q ss_pred             HHHHhh
Q 043389          140 TEVMGD  145 (223)
Q Consensus       140 ~e~m~~  145 (223)
                      .+.+.+
T Consensus       181 a~a~~e  186 (221)
T PF04012_consen  181 AEASAE  186 (221)
T ss_pred             HHHHHH
Confidence            444444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.68  E-value=0.0086  Score=50.53  Aligned_cols=129  Identities=14%  Similarity=0.246  Sum_probs=81.5

Q ss_pred             CCCChHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-----
Q 043389            7 KRKTPAELLRENKRMLDKSI--------------REIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLI-----   67 (223)
Q Consensus         7 ~~~~p~e~~r~~~~~lr~~~--------------r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~v-----   67 (223)
                      +-.+|...++...++++..+              +.+++++..++....+...+++.|+++|+-+-||-.+..-.     
T Consensus        21 k~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~  100 (219)
T TIGR02977        21 KAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQEL  100 (219)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            44688767776666665444              56778888888888888889999999999887765432211     


Q ss_pred             --HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 043389           68 --RTRHQI----EKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK  135 (223)
Q Consensus        68 --r~rk~~----~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~  135 (223)
                        +...++    ..+..+..+|..+..+|+.+.+...+..+=..++.+...+|..+.--.+...+..|++-.++
T Consensus       101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence              111111    23345555666666667777777776666566677766776665444445555565554444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.019  Score=47.59  Aligned_cols=159  Identities=17%  Similarity=0.299  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           23 DKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKD----LIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQA   98 (223)
Q Consensus        23 r~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~----~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~   98 (223)
                      ..+|..|.--..-|++++.-++.+|-..+..+    |+.|..-    ++..=+...+|.+.-++++++...|+.+..+.+
T Consensus        20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~----A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE   95 (221)
T KOG1656|consen   20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVENN----ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   95 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34677777777788888888888888776642    4554433    333444456777888899999999998888777


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHH--HHHHHHHH---HhHhHHHHHhhhhcccCC--CCCcHHHHHHHHHHHHHHh
Q 043389           99 MGEAMKGVTKAMGQMNRQMNLPSLQKIM--QEFERQNE---KMEMVTEVMGDAIDDALE--GDDEEEETEELVNQVLDEI  171 (223)
Q Consensus        99 ~~~am~~~~~~mk~~n~~m~~~kv~~~M--~ef~~e~~---~~~~~~e~m~~~l~~~~d--~~~~eee~d~l~~qvldE~  171 (223)
                      -++.=-.+-.+|+..-+.|  ..++..|  |+..+-|+   ....+.+=|+++++.-+.  .+.+++|+..+++.+-+|.
T Consensus        96 nA~~n~Evl~~m~~~A~Am--K~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee  173 (221)
T KOG1656|consen   96 NANTNTEVLDAMGSAAKAM--KAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE  173 (221)
T ss_pred             cccccHHHHHHHHHHHHHH--HHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence            7666666777788888777  4444333  34444444   444455667788988886  3468999999999888876


Q ss_pred             cchhhhhhccCCCCCCCcc
Q 043389          172 GIDINQELVNAPSSTVAAP  190 (223)
Q Consensus       172 ~~~~~~~l~~~P~~~~~~~  190 (223)
                         +..++-.++.+++++|
T Consensus       174 ---ld~~ll~~~~p~v~LP  189 (221)
T KOG1656|consen  174 ---LDKELLDIRAPPVPLP  189 (221)
T ss_pred             ---HHHHHhccCCCCCCCC
Confidence               3344444333334333

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=97.45  E-value=0.00039  Score=55.66  Aligned_cols=147  Identities=20%  Similarity=0.312  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           25 SIREIERERQGLQTQEKKLISEIKKS---AKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGE  101 (223)
Q Consensus        25 ~~r~Ldr~~~~le~~ekkl~~~iK~a---~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~  101 (223)
                      ++..|...+.+|++..+++..+|++.   +++--..+-+..|+.++|.++.+.+.   ..++.....+|+........+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~---~~~~~~~~~~l~~~~~~ie~a~   78 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQ---LEKLLNQLSNLESVLLQIETAQ   78 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999854   33444556678888888877765443   4566677778888888888888


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHH--HHHHHHHHhHhHHH---HHhhhhcccCCCCCcHHHHHHHHHHHHHHhcchhh
Q 043389          102 AMKGVTKAMGQMNRQMNLPSLQKIMQ--EFERQNEKMEMVTE---VMGDAIDDALEGDDEEEETEELVNQVLDEIGIDIN  176 (223)
Q Consensus       102 am~~~~~~mk~~n~~m~~~kv~~~M~--ef~~e~~~~~~~~e---~m~~~l~~~~d~~~~eee~d~l~~qvldE~~~~~~  176 (223)
                      ....+..+|+..++.|  .++...|+  ++..-++.+....+   .++++|++.+  +.....-|++++..|+++.-+..
T Consensus        79 ~~~~v~~al~~~~~~L--k~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~--~~~~~~dd~ele~eL~~l~~e~~  154 (171)
T PF03357_consen   79 SNQQVVKALKQSSKAL--KKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSM--DQVDDVDDEELEEELEQLEDEIE  154 (171)
T ss_dssp             HHHHHSSS----SHHH--HHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCHHHHHHHHHHHHHHHh
Confidence            8899888999888876  45555544  44444444433222   3333443321  11156677788888888866554


Q ss_pred             hh
Q 043389          177 QE  178 (223)
Q Consensus       177 ~~  178 (223)
                      ..
T Consensus       155 ~~  156 (171)
T PF03357_consen  155 EE  156 (171)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.015  Score=47.90  Aligned_cols=162  Identities=12%  Similarity=0.240  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           12 AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKS---AKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSL   88 (223)
Q Consensus        12 ~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a---~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~   88 (223)
                      +-.+..+.|.|.+....|+-+-++|=.+.|+.-.+=...   +-..+.-..|.|.+.+...|   .++.....++.++.+
T Consensus        18 qRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~k---aqiqaVSl~iQtlks   94 (224)
T KOG3230|consen   18 QRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMK---AQIQAVSLRIQTLKS   94 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            345556777788888888888887777776654422111   11234444566655555444   456666677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH-HhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHH
Q 043389           89 RIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE-KMEMVTEVMGDAIDDALEGDDEEEETEELVNQV  167 (223)
Q Consensus        89 ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~-~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qv  167 (223)
                      .-.-+.++.-++++|...++-|.    .-.+.+|-.-...-.+.|+ ..+++++.|+|+|+..-|+++-++=+...++.|
T Consensus        95 s~sma~aMkGaTkam~~MNrqmn----lpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEi  170 (224)
T KOG3230|consen   95 STSMAQAMKGATKAMAGMNRQMN----LPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEI  170 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            77788888888888887665542    2223333333333333333 346788999999987777777777788888888


Q ss_pred             HHHhcchhhhhhcc
Q 043389          168 LDEIGIDINQELVN  181 (223)
Q Consensus       168 ldE~~~~~~~~l~~  181 (223)
                      -=.++-++++ +|+
T Consensus       171 Gvdl~~qL~~-~P~  183 (224)
T KOG3230|consen  171 GVDLASQLSS-LPS  183 (224)
T ss_pred             cccHHHHhcc-Ccc
Confidence            7777665544 444

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.055  Score=43.55  Aligned_cols=155  Identities=16%  Similarity=0.264  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           13 ELLRENKRMLDKSIREIERERQGLQTQEKKLIS---------EIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQL   83 (223)
Q Consensus        13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~---------~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L   83 (223)
                      -.+|...|.|-+.-|.++++-++|+.+.++.-.         .+|+.+.-.+ ...|.||-        ..++..+..|=
T Consensus        18 ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRk-QKtrt~a~--------s~ki~s~~~Qn   88 (208)
T KOG3231|consen   18 RELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRK-QKTRTFAV--------SSKITSMSTQN   88 (208)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH-hhhhhhhh--------hhhhhhhHHHH
Confidence            356778888888889999999999888887643         2222221111 11122221        12333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHH
Q 043389           84 QGVSLRIQTLKSTQAMGEAMKGVTKAMG--QMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETE  161 (223)
Q Consensus        84 ~~v~~ql~~a~~~~~~~~am~~~~~~mk--~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d  161 (223)
                      -.+.+++..+.++-.+++.|+..++.|.  ++...|  -.++..-..  .+ ..-++|++.+++.|+..-|+++.++-|.
T Consensus        89 K~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tm--r~FQ~anmK--Me-mTeEMiNDTLDdild~sgDeeEs~aiVN  163 (208)
T KOG3231|consen   89 KVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTM--RNFQKANMK--ME-MTEEMINDTLDDILDGSGDEEESQAIVN  163 (208)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHH--HHHHHHHHH--hh-hHHHHHHhhHHHHhcCCCcHHHHHHHHH
Confidence            4455566666666666667776666653  222222  333322111  11 1236788999999998888888889999


Q ss_pred             HHHHHHHHHhcchhhhhhccC
Q 043389          162 ELVNQVLDEIGIDINQELVNA  182 (223)
Q Consensus       162 ~l~~qvldE~~~~~~~~l~~~  182 (223)
                      ..++.|-=|+...+.. .|++
T Consensus       164 qVLDEIGIEisgKma~-~P~a  183 (208)
T KOG3231|consen  164 QVLDEIGIEISGKMAK-APSA  183 (208)
T ss_pred             HHHHHhhhhhcchhcc-CCcc
Confidence            9999999999887754 6654

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=96.37  E-value=0.53  Score=40.02  Aligned_cols=130  Identities=22%  Similarity=0.273  Sum_probs=78.2

Q ss_pred             CCChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 043389            8 RKTPAELLRENKRMLDK--------------SIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQI   73 (223)
Q Consensus         8 ~~~p~e~~r~~~~~lr~--------------~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~   73 (223)
                      -.+|+..+...++++..              ..+.++++..++.....+++.+++.|+.+|+..-|+-.+...-..-+..
T Consensus        22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~  101 (225)
T COG1842          22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA  101 (225)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            36787666655555433              3478888999999999999999999999999776665433332222211


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCChhHHHHHHHHHHHHHHHhHhH
Q 043389           74 -----------EKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMG---QMNRQMNLPSLQKIMQEFERQNEKMEMV  139 (223)
Q Consensus        74 -----------~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk---~~n~~m~~~kv~~~M~ef~~e~~~~~~~  139 (223)
                                 .....++.++..+..+|.....-..+..+=..++++-.   .+...++.   ...|..|++.-++.+..
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kiee~  178 (225)
T COG1842         102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIEER  178 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHHHH
Confidence                       23344555555566665555555555555444444444   44444555   56666666555444433


Q ss_pred             H
Q 043389          140 T  140 (223)
Q Consensus       140 ~  140 (223)
                      +
T Consensus       179 e  179 (225)
T COG1842         179 E  179 (225)
T ss_pred             H
Confidence            3

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=93.78  E-value=0.81  Score=36.95  Aligned_cols=153  Identities=18%  Similarity=0.244  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           19 KRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQA   98 (223)
Q Consensus        19 ~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~   98 (223)
                      +..|+.++..|.-...+.....+....+|-..++.|+.+.|++-+..+++-.+...=|.-+..-.+-+..++........
T Consensus         1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~   80 (165)
T PF03398_consen    1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKE   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TS
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            34688888888888889999999999999999999999999999999999999988777777777777766665444433


Q ss_pred             HHHHHHHHHHHHHHHHhc-CChhHHHHHHHHH----HHHHHHh------HhHHHHHhhhhcccCCCCCcHHHHHHHHHHH
Q 043389           99 MGEAMKGVTKAMGQMNRQ-MNLPSLQKIMQEF----ERQNEKM------EMVTEVMGDAIDDALEGDDEEEETEELVNQV  167 (223)
Q Consensus        99 ~~~am~~~~~~mk~~n~~-m~~~kv~~~M~ef----~~e~~~~------~~~~e~m~~~l~~~~d~~~~eee~d~l~~qv  167 (223)
                      .-..++.+...+=-...- -+++.+..+-.-|    .+++...      +.++..+-.-++...   -.++.++..+..|
T Consensus        81 ~p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~---p~~~~v~~~L~eI  157 (165)
T PF03398_consen   81 CPPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKP---PSEELVEKYLKEI  157 (165)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S------CCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCC---cCHHHHHHHHHHH
Confidence            333344333333333333 4667666554433    3444222      111222212222111   1234677777777


Q ss_pred             HHHhcch
Q 043389          168 LDEIGID  174 (223)
Q Consensus       168 ldE~~~~  174 (223)
                      +.|+|++
T Consensus       158 A~e~~i~  164 (165)
T PF03398_consen  158 AKEYGIP  164 (165)
T ss_dssp             HHHCT-S
T ss_pred             HHHcCCC
Confidence            7777764

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.82  E-value=4.9  Score=33.39  Aligned_cols=147  Identities=15%  Similarity=0.267  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           22 LDKSIREIERERQGLQTQEKKLISEIKKS---AKQGQMGAVKV-MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQ   97 (223)
Q Consensus        22 lr~~~r~Ldr~~~~le~~ekkl~~~iK~a---~k~g~~~~ari-~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~   97 (223)
                      |.-.+..+++-...++.+..+|..++.+.   +++=...-++. +=+.++|.=|+...|...+-+|.+-.+.++.++-+.
T Consensus        17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~   96 (218)
T KOG1655|consen   17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA   96 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            56677778888888888888888776644   44444444443 334466666777888888888888888888877766


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChh----HHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhc
Q 043389           98 AMGEAMKGVTKAMGQMNRQMNLP----SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIG  172 (223)
Q Consensus        98 ~~~~am~~~~~~mk~~n~~m~~~----kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~  172 (223)
                      +-.+--.....+|+..|+.|.-.    .|+ -+++++.+|+.+=....=|.++|+...  ..++-..+ .++.-|+-++
T Consensus        97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId-~IedlQDem~Dlmd~a~EiQE~Lgr~y--~~peide~-dL~aELdaL~  171 (218)
T KOG1655|consen   97 ESLKDTQATVAAMKDTNKEMKKQYKKVNID-KIEDLQDEMEDLMDQADEIQEVLGRNY--NTPDIDEA-DLDAELDALG  171 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcCHH-HHHHHHHHHH
Confidence            66555556667888888877332    222 345666666665444444566666543  55663333 3344444443

>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.74  E-value=2.1  Score=31.12  Aligned_cols=50  Identities=10%  Similarity=0.304  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389           68 RTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM  117 (223)
Q Consensus        68 r~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m  117 (223)
                      .+++...+|.+...|+.+|..-|+.-.-...+...+..+..++..+...+
T Consensus         7 ~kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~v   56 (89)
T COG1937           7 EKKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMREV   56 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999999999999998888888888888888887776544

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=88.74  E-value=13  Score=30.91  Aligned_cols=95  Identities=22%  Similarity=0.360  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-H-------HHHH-HHHHHHHHHHHHHH
Q 043389           21 MLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQ-I-------EKFY-KLKSQLQGVSLRIQ   91 (223)
Q Consensus        21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~-~-------~~l~-~~~~~L~~v~~ql~   91 (223)
                      +-.++|-.|.++..+|-+..+++.+.+-         .=|.+|+.+||...- .       .+|+ .+-.|-+.--..|+
T Consensus        13 d~DrAIL~lK~QRdkl~qyqkR~e~~le---------~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlE   83 (209)
T KOG2910|consen   13 DQDRAILSLKTQRDKLKQYQKRLEKQLE---------AERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLE   83 (209)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888888888888777653         346788888884332 1       2332 34444444445577


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 043389           92 TLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIM  126 (223)
Q Consensus        92 ~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M  126 (223)
                      .+.+..+.+..=+.+..+++.-|..+  .+++..|
T Consensus        84 qmvsdiEft~vqk~V~~gLk~GN~~l--kkl~~~~  116 (209)
T KOG2910|consen   84 QMVSDIEFTQVQKKVMEGLKQGNEAL--KKLQQEF  116 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence            88888888888889999999999877  5666554

>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function

Probab=88.36  E-value=5.4  Score=28.48  Aligned_cols=77  Identities=16%  Similarity=0.402  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhc
Q 043389           69 TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAID  148 (223)
Q Consensus        69 ~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~  148 (223)
                      +++-..+|.+...|+.+|..-++.-....++...+..+-.+|..+...+                     +.+.+...+.
T Consensus         4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~v---------------------l~~hl~~c~~   62 (85)
T PF02583_consen    4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKLV---------------------LEDHLEHCLV   62 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Confidence            3455678999999999999999988888888888888888888777554                     4445555554


Q ss_pred             ccCCC-CCcHHHHHHHHHH
Q 043389          149 DALEG-DDEEEETEELVNQ  166 (223)
Q Consensus       149 ~~~d~-~~~eee~d~l~~q  166 (223)
                      ....+ .+.++.+++++.-
T Consensus        63 ~~~~~~~~~~~~i~el~~~   81 (85)
T PF02583_consen   63 EAIQDEEDREEAIEELIKL   81 (85)
T ss_dssp             CHCCTCCCHHHHHHHHHHH
T ss_pred             hHhcCcccHHHHHHHHHHH
Confidence            44333 3455666665543

; PDB: 2HH7_A 3AAI_A 4ADZ_B.

>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional

Probab=87.52  E-value=5.7  Score=28.88  Aligned_cols=49  Identities=10%  Similarity=0.175  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389           69 TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM  117 (223)
Q Consensus        69 ~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m  117 (223)
                      +++...+|.+..+|+.+|..-++.-.....+...+..+-.++..+...+
T Consensus         8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~v   56 (90)
T PRK15039          8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREV   56 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556779999999999999999887777788888887777777665544

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=85.28  E-value=6  Score=35.64  Aligned_cols=65  Identities=32%  Similarity=0.566  Sum_probs=32.8

Q ss_pred             CccccCCC-CChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHH
Q 043389            1 MSFLFGKR-KTPAELLRENKRMLDKSIREI----ERERQGLQTQEKKLISEIKKSAKQG-----QMGAVKVMAKDLIRT   69 (223)
Q Consensus         1 ~~~~Fg~~-~~p~e~~r~~~~~lr~~~r~L----dr~~~~le~~ekkl~~~iK~a~k~g-----~~~~ari~Ak~~vr~   69 (223)
                      |++|||++ ++|.|.+|.    ++.....|    ++...+...+-.+.-.+||.-+-..     +.+.+..+|.++.+.
T Consensus         1 M~FlF~k~~KtP~ElVr~----l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~   75 (335)
T PF08569_consen    1 MSFLFKKKPKTPAELVRS----LREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS   75 (335)
T ss_dssp             -----------HHHHHHH----HHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHH----HHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence            78999975 789998884    66666666    3445555555555555666655522     234456777887764

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.14  E-value=28  Score=32.40  Aligned_cols=150  Identities=20%  Similarity=0.201  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 043389           19 KRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQ---MGAVKVMAKDLIRTRHQIE-KFYKLKSQLQGVSLRIQTLK   94 (223)
Q Consensus        19 ~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~---~~~ari~Ak~~vr~rk~~~-~l~~~~~~L~~v~~ql~~a~   94 (223)
                      ...+.-.+-.|-+-..+|.++-..+..+|+++-.+-.   .++-|..|...+|.|+-.+ .+.+..+.++.++    +..
T Consensus       228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~----~vl  303 (439)
T KOG2911|consen  228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLE----TVL  303 (439)
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHH
Confidence            3467788889999999999999999999998765443   2455678888888887654 5556666655554    444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHh------hhhcccCCCCCcHHHHHHHHHHHH
Q 043389           95 STQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMG------DAIDDALEGDDEEEETEELVNQVL  168 (223)
Q Consensus        95 ~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~------~~l~~~~d~~~~eee~d~l~~qvl  168 (223)
                      ++...+..=+-+-.+++.-+..++.-..  .+-..++--+.++.+.+.++      ++|.+..  ....+.-|+.+++-|
T Consensus       304 ~~Id~s~~nkvvl~AyksGs~alK~il~--~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~--~~~~d~~de~lEkEL  379 (439)
T KOG2911|consen  304 SQIDNSQTNKVVLQAYKSGSEALKAILA--QGGSTEKVEDVLDEVNETLDRQEEVEDALASYN--VNNIDFEDEDLEKEL  379 (439)
T ss_pred             HHHHhhcccHHHHHHHHHhHHHHHHHHh--ccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCC--CCCCccchHHHHHHH
Confidence            4444444456666778888777644333  23344444445555555554      4454432  234477888999999


Q ss_pred             HHhcchhh
Q 043389          169 DEIGIDIN  176 (223)
Q Consensus       169 dE~~~~~~  176 (223)
                      +++..|..
T Consensus       380 ~~L~~D~~  387 (439)
T KOG2911|consen  380 EDLEADEK  387 (439)
T ss_pred             HHHHhccc
Confidence            99876654

>PRK11352 regulator protein FrmR; Provisional

Probab=83.88  E-value=11  Score=27.46  Aligned_cols=49  Identities=8%  Similarity=0.220  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389           69 TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM  117 (223)
Q Consensus        69 ~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m  117 (223)
                      +++...+|.+...|+.+|..-|+.-.....+...+..+..++..+...+
T Consensus         8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~~i   56 (91)
T PRK11352          8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAEV   56 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556679999999999999999988888888888888888877665444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
3frv_A	152	Structure Of Human Chmp3 (Residues 1-150) Length =		3e-10
3frt_A	218	The Structure Of Human Chmp3 (Residues 8 - 222). Le		2e-09
2gd5_A	179	Structural Basis For Budding By The Escrtiii Factor		2e-06

>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150) Length = 152

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 4   LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
           LFGK   K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V
Sbjct: 5   LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV 64
Query: 62  MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
           +AK++IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P 
Sbjct: 65  LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 124
Query: 122 LQKIMQEFERQNEKMEMVTEVM 143
           +Q  M+E  ++  K  ++ E++
Sbjct: 125 IQATMRELSKEMMKAGIIEEML 146

>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222). Length = 218

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 75/135 (55%)
Query: 9   KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIR 68
           K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK++IR
Sbjct: 6   KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIR 65
Query: 69  TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQE 128
           +R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P +Q  M+E
Sbjct: 66  SRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRE 125
Query: 129 FERQNEKMEMVTEVM 143
             ++  K  ++ E++
Sbjct: 126 LSKEMMKAGIIEEML 140

>pdb|2GD5|A Chain A, Structural Basis For Budding By The Escrtiii Factor Chmp3 Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 9   KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIR 68
           K P EL+ E    + K  R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK+ IR
Sbjct: 6   KPPKELVNEWSLKIRKEXRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEXIR 65
Query: 69  TRHQIEKFYKLKSQ----LQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQK 124
           +R  + K Y  K+     L G   ++  L+   ++ ++ + V KA   +   + +P +Q 
Sbjct: 66  SRKAVSKLYASKAHXNSVLXGXKNQLAVLRVAGSLQKSTE-VXKAXQSL---VKIPEIQA 121
Query: 125 IMQEFERQNEKMEMVTEVM 143
             +E  ++  K  ++ E++
Sbjct: 122 TXRELSKEXXKAGIIEEML 140
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	2e-48
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	6e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  157 bits (398), Expect = 2e-48
 Identities = 52/216 (24%), Positives = 113/216 (52%), Gaps = 1/216 (0%)

Query: 6   GKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKD 65
            + K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK+
Sbjct: 3   MQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKE 62

Query: 66  LIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKI 125
           +IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P +Q  
Sbjct: 63  MIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT 122

Query: 126 MQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAPSS 185
           M+E  ++  K  ++ E++ D  +   + ++ EEE E  ++++L EI      +  +  + 
Sbjct: 123 MRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTD 182

Query: 186 TVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 221
            +  P   G +A +E    ++  ++  +Q+RL  LR
Sbjct: 183 ALPEPEPPGAMAASEDEEEEEEALE-AMQSRLATLR 217

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score =  142 bits (358), Expect = 6e-43
 Identities = 43/173 (24%), Positives = 92/173 (53%)

Query: 7   KRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDL 66
             K P EL+ E    + K +R ++R+ + +Q +E+K+   +K +AK+GQ     V+AK++
Sbjct: 4   AEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEM 63

Query: 67  IRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIM 126
           IR+R  + K Y  K+ +  V + ++   +   +  +++  T+ M  M   + +P +Q  M
Sbjct: 64  IRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATM 123

Query: 127 QEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQEL 179
           +E  ++  K  ++ E++ D  +   + ++ EEE E  ++++L EI      + 
Sbjct: 124 RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 35/242 (14%), Positives = 68/242 (28%), Gaps = 75/242 (30%)

Query: 5   FGKRKTPAELLRENK---RMLDK----SIREIERERQGLQTQEKKLISEIKKSAKQGQMG 57
            GK     ++    K   +M  K    +++        L+  +K L+ +I  +       
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDH 219

Query: 58  AVKVM-----AKDLIRTRHQIEKFYK--L--------KSQLQGVSLRIQTLKSTQAMGEA 102
           +  +       +  +R R    K Y+  L               +L  + L +T+     
Sbjct: 220 SSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF---- 274

Query: 103 MKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEE 162
            K VT  +                             T +  D     L      +E + 
Sbjct: 275 -KQVTDFLSAATT------------------------THISLDHHSMTLT----PDEVKS 305

Query: 163 LVNQVLDEIGIDINQELVNAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 221
           L+ + L        Q+L   P   +   P     +A++            D  A  DN +
Sbjct: 306 LLLKYL---DCRP-QDL---PREVLTTNPRRLSIIAES----------IRDGLATWDNWK 348

Query: 222 RM 223
            +
Sbjct: 349 HV 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	98.93
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	98.91
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	98.56
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	97.89
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	97.67
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.44
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	97.31
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	96.96
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	95.17
2hh7_A	119	Hypothetical protein CSOR; 4-helix bundle, unknown	91.53
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	90.78
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	88.71
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	88.18
3aai_A	94	Copper homeostasis operon regulatory protein; all	81.55

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-50  Score=338.42  Aligned_cols=213  Identities=26%  Similarity=0.423  Sum_probs=140.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389            7 KRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV   86 (223)
Q Consensus         7 ~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v   86 (223)
                      +++||+|++|+|++.||+++|+|+|++.+|++++++++.+||+++++||.++|||||+++||.|+++.+|+.++++|++|
T Consensus         4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV   83 (218)
T 3frt_A            4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV   83 (218)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHH
Q 043389           87 SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQ  166 (223)
Q Consensus        87 ~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~q  166 (223)
                      +++|+++.++.+++++|++++++|+.+|+.||+|+|+.+|++|++|++++|++++||+|+|++.++++++++|+|++|++
T Consensus        84 ~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~k  163 (218)
T 3frt_A           84 LMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR  163 (218)
T ss_dssp             HHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888777889999999999


Q ss_pred             HHHHhcchhhhhhccCCCCCCC-ccccchhhhhhhc-cCCCCCCcHHHHHHHHHHhhc
Q 043389          167 VLDEIGIDINQELVNAPSSTVA-APAVKGKVAQAEA-TGNDDGGIDSDLQARLDNLRR  222 (223)
Q Consensus       167 vldE~~~~~~~~l~~~P~~~~~-~~~~~~~~~~~~~-~~~~~~~~~d~l~~RL~~Lr~  222 (223)
                      ||+|+|.   ++|+.+|+++.+ +|.+.+..+.++. ..++.++..+++.+||++||+
T Consensus       164 VldEi~~---~~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          164 ILFEITA---GALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             HHHTC-----------------------------------------------------
T ss_pred             HHHHHhH---hHhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence            9999985   456666654322 2211111011111 111223457889999999985

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=8.1e-45  Score=296.39  Aligned_cols=178  Identities=26%  Similarity=0.454  Sum_probs=141.6

Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389            4 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQL   83 (223)
Q Consensus         4 ~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L   83 (223)
                      +|++ |||+|++++|++.||+++|+|+|++.+|++++++++.+||+++++|+.++||+||+++||+|++..+|+.++++|
T Consensus         2 ~~~~-~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l   80 (179)
T 2gd5_A            2 AMAE-KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHM   80 (179)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5654 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHH
Q 043389           84 QGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEEL  163 (223)
Q Consensus        84 ~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l  163 (223)
                      ++|.++|+++.++..++++|+.++++|+.+|+.||+++|+++|++|+++++++++++++|+++|+++++++++++++|++
T Consensus        81 ~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~  160 (179)
T 2gd5_A           81 NSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME  160 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988878899999999


Q ss_pred             HHHHHHHhcchhhhhhccCCCC
Q 043389          164 VNQVLDEIGIDINQELVNAPSS  185 (223)
Q Consensus       164 ~~qvldE~~~~~~~~l~~~P~~  185 (223)
                      +++||+|+|+   ++||++|++
T Consensus       161 v~kVl~E~~~---~~l~~~P~~  179 (179)
T 2gd5_A          161 IDRILFEITA---GALGKAPSK  179 (179)
T ss_dssp             HHHTTCCC--------------
T ss_pred             HHHHHHHhhH---hhcccCCCC
Confidence            9999999985   468877753

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=98.93  E-value=2.7e-11  Score=77.78  Aligned_cols=49  Identities=29%  Similarity=0.512  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhcchhhhhhccCCCCCCCccccchhhhhhhccCCCCCCcHHHHHHHHHHhhc
Q 043389          160 TEELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR  222 (223)
Q Consensus       160 ~d~l~~qvldE~~~~~~~~l~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~  222 (223)
                      ||++++||+||+|+++..+||.+|.+.++.+        +.      ..++|+|.+||++||+
T Consensus         2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~--------~~------~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            2 VDMLLQEMADEAGLDLNMELPQGQTGSVGTS--------VA------SAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCHHHHHHHHHTTCC---------CHHHHHH--------HH------HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhCchHHhhcccccccccCCC--------CC------cccHHHHHHHHHHHhC
Confidence            6899999999999999999998876543211        01      1469999999999996

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=98.91  E-value=3.7e-09  Score=77.87  Aligned_cols=74  Identities=24%  Similarity=0.425  Sum_probs=57.1

Q ss_pred             cCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhc--ccCCCCCcHHHHHHHHHHHHHHhcchhh----hhhccCCCCCCCc
Q 043389          116 QMNLPSLQKIMQEFERQNEKMEMVTEVMGDAID--DALEGDDEEEETEELVNQVLDEIGIDIN----QELVNAPSSTVAA  189 (223)
Q Consensus       116 ~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~--~~~d~~~~eee~d~l~~qvldE~~~~~~----~~l~~~P~~~~~~  189 (223)
                      .|++++|.++|+++.++++..+.|+++|+.+++  +.+|+++.++|++++.+..+++-.+++.    ..||++|++.+|.
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp~   81 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPS   81 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCCC
Confidence            589999999999999999999999999999874  3455556666777776666666555443    2488888877654

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=98.56  E-value=3.6e-08  Score=81.88  Aligned_cols=154  Identities=18%  Similarity=0.248  Sum_probs=79.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 043389            9 KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIK---KSAKQGQMGAVKVMAKDLIRT-RHQIEKFYKLKSQLQ   84 (223)
Q Consensus         9 ~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK---~a~k~g~~~~ari~Ak~~vr~-rk~~~~l~~~~~~L~   84 (223)
                      ++|+..+++   .+|.-.|.|.+..+.|+|+..+++.+=|   ..+|+--..+-.    +..|. =+...+.-+...++-
T Consensus         2 ~~~~~~p~e---~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~----~~arilAkelVR~Rk~~~rl~   74 (218)
T 3frt_A            2 HMQEKPPKE---LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQK----DVCIVLAKEMIRSRKAVSKLY   74 (218)
T ss_dssp             ------CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHH
Confidence            566666666   4666677777777777777776665544   334332211111    11111 122335556677788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH--HHHHHHHHHhH---hHHHHHhhhhcccCCCCCcHHH
Q 043389           85 GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIM--QEFERQNEKME---MVTEVMGDAIDDALEGDDEEEE  159 (223)
Q Consensus        85 ~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M--~ef~~e~~~~~---~~~e~m~~~l~~~~d~~~~eee  159 (223)
                      .+..+|++.....+...++..++..|+.+.+.|  ..+...|  .++..-|..+.   +.-+++.+.|++.+|+..+.++
T Consensus        75 ~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M--~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~  152 (218)
T 3frt_A           75 ASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEE  152 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC----CCCCCHHHH--HHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCC
Confidence            888899998888888888888888888888887  6677776  66776666663   3334566778887765544455


Q ss_pred             HHHHHHHHHHHh
Q 043389          160 TEELVNQVLDEI  171 (223)
Q Consensus       160 ~d~l~~qvldE~  171 (223)
                      .+++++.+.+.+
T Consensus       153 ~eee~d~~v~kV  164 (218)
T 3frt_A          153 MEEEAEMEIDRI  164 (218)
T ss_dssp             CTTSTTTHHHHH
T ss_pred             chHHHHHHHHHH
Confidence            556666666554

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=97.89  E-value=0.00038  Score=48.53  Aligned_cols=74  Identities=11%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 043389           14 LLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE-KFYKLKSQLQGVSLRIQT   92 (223)
Q Consensus        14 ~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~-~l~~~~~~L~~v~~ql~~   92 (223)
                      .+++++..||.+...|++....|+..-......+|+++ .+|..    -|..++|+||+++ .|.++.+++++++.++.+
T Consensus         3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~----~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~   77 (79)
T 4abm_A            3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKR----AALQALKRKKRYEKQLAQIDGTLSTIEFQREA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566668999999999999999999999999999988 56643    5666888888776 556999999999988764

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=97.67  E-value=7e-06  Score=53.18  Aligned_cols=47  Identities=30%  Similarity=0.548  Sum_probs=24.3

Q ss_pred             hhhccCCCCCCCccccchh---hhhhhccCCC-CCCcHHHHHHHHHHhhcC
Q 043389          177 QELVNAPSSTVAAPAVKGK---VAQAEATGND-DGGIDSDLQARLDNLRRM  223 (223)
Q Consensus       177 ~~l~~~P~~~~~~~~~~~~---~~~~~~~~~~-~~~~~d~l~~RL~~Lr~~  223 (223)
                      .+|.++|++....+....+   +++++..+++ ....+|||++||++||++
T Consensus         3 ~qL~~aP~~~~~~~~~~~~~~~va~a~g~~~~~~~~~ddDLQARLdsLRR~   53 (54)
T 2v6x_B            3 HMLQSTPQNLVSNAPIAETAMGIAEPIGAGSEFHGNPDDDLQARLNTLKKQ   53 (54)
T ss_dssp             CCCCCCCHHHHTTCCCGGGGSSSSCC----------CCHHHHHHHHHHHCC
T ss_pred             chhhhccccccccccccccccccccccccCCCCCCCchHHHHHHHHHhccC
Confidence            4577777654333222222   2333322111 134799999999999974

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.44  E-value=7.9e-05  Score=59.85  Aligned_cols=148  Identities=18%  Similarity=0.231  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           21 MLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTR-HQIEKFYKLKSQLQGVSLRIQTLKSTQAM   99 (223)
Q Consensus        21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~r-k~~~~l~~~~~~L~~v~~ql~~a~~~~~~   99 (223)
                      .||...+.|.+.++.|+++..+++.+-|+....= ..+++--.....|.. +...+.-+...+|.....+|++.....+.
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999998887776543211 122221111222211 12334446677788888999999998888


Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHHH--HHHHHHHHHh---HhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHh
Q 043389          100 GEAMKGVTKAMGQMNRQMNLPSLQKIM--QEFERQNEKM---EMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEI  171 (223)
Q Consensus       100 ~~am~~~~~~mk~~n~~m~~~kv~~~M--~ef~~e~~~~---~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~  171 (223)
                      ..++..++.+|+..++.|  ..+...|  +++..-|..+   -..-++++++|++.+++..++++.+++++.+++.+
T Consensus        90 ~~~~~~v~~am~~~~~~M--~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV  164 (179)
T 2gd5_A           90 QLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (179)
T ss_dssp             HHHHHHHTSSCCCCSHHH--HTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            888888888888887776  4455555  5555555555   44444557889988876545556666666666555

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=97.31  E-value=0.018  Score=46.55  Aligned_cols=167  Identities=11%  Similarity=0.138  Sum_probs=107.5

Q ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389            2 SFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKS   81 (223)
Q Consensus         2 ~~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~   81 (223)
                      |.+||++.++    .+++..|+.++..|.=-.++-....++...+|-..++.|..+.||+-+.++||-.+...=|.-+..
T Consensus         1 ~~mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilEl   76 (191)
T 3frr_A            1 GHMLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILEL   76 (191)
T ss_dssp             ---CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689987664    366778899999988888888888899999999999999999999999999999998776665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc-CChhHHHHHHHHH----HHHHHHh------HhHHHHHhhhhcc
Q 043389           82 QLQGVSLRIQTLKSTQAMGEAMKGVTKAMG-QMNRQ-MNLPSLQKIMQEF----ERQNEKM------EMVTEVMGDAIDD  149 (223)
Q Consensus        82 ~L~~v~~ql~~a~~~~~~~~am~~~~~~mk-~~n~~-m~~~kv~~~M~ef----~~e~~~~------~~~~e~m~~~l~~  149 (223)
                      -.+-+..++.....+...-..++.+...+= ...+. -+++++..+=+-|    .+++...      +-++..+-.-++.
T Consensus        77 yCelL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs~  156 (191)
T 3frr_A           77 YCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSV  156 (191)
T ss_dssp             HHHHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcCC
Confidence            555555555544433333333444333333 33443 5778887655444    4444432      1122222222222


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHhcchh
Q 043389          150 ALEGDDEEEETEELVNQVLDEIGIDI  175 (223)
Q Consensus       150 ~~d~~~~eee~d~l~~qvldE~~~~~  175 (223)
                      .   .-..+-++..+..|+.+++++.
T Consensus       157 ~---~P~~~lv~~yL~EIA~~y~V~w  179 (191)
T 3frr_A          157 E---APPKILVERYLIEIAKNYNVPY  179 (191)
T ss_dssp             S---CCCHHHHHHHHHHHHHHHTCCC
T ss_pred             C---CcCHHHHHHHHHHHHHHcCCCC
Confidence            1   1245677788888888887754

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.00045  Score=45.06  Aligned_cols=54  Identities=19%  Similarity=0.228  Sum_probs=45.5

Q ss_pred             CChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 043389          117 MNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDE  170 (223)
Q Consensus       117 m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE  170 (223)
                      +|+.+|..+++++...++..+.|+++|+.+.+....++.++++++++++.+-+|
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de   54 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE   54 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence            578999999999999999999999999998775422245778899999888877

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=95.17  E-value=0.99  Score=36.31  Aligned_cols=160  Identities=10%  Similarity=0.114  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389           13 ELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT   92 (223)
Q Consensus        13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~   92 (223)
                      ...-+++..|+.++..|.=-.++-....+....+|-+.++.|..+.||+-+.++||-.+...=|.-+..-.+-+..++..
T Consensus         7 ~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~l   86 (193)
T 3ggy_A            7 PFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQV   86 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557888999999999988888899999999999999999999999999999999999877665555555555555443


Q ss_pred             HHH--------HHHHHHHHHHHHHHH-HHHHhcCChhHHHHHHHHH----HHHHHHh------HhHHHHHhhhhcccCCC
Q 043389           93 LKS--------TQAMGEAMKGVTKAM-GQMNRQMNLPSLQKIMQEF----ERQNEKM------EMVTEVMGDAIDDALEG  153 (223)
Q Consensus        93 a~~--------~~~~~~am~~~~~~m-k~~n~~m~~~kv~~~M~ef----~~e~~~~------~~~~e~m~~~l~~~~d~  153 (223)
                      ...        ....-..++.+...+ =...+..+++.+..+=+-|    .++|...      ++-..++. -++..   
T Consensus        87 l~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~-kLs~~---  162 (193)
T 3ggy_A           87 INDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIK-KCSPS---  162 (193)
T ss_dssp             HTTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHH-HHSCC---
T ss_pred             HHhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHH-HcCCC---
Confidence            332        222333344443333 3334446888887554444    4444332      22222222 22221   


Q ss_pred             CCcHHHHHHHHHHHHHHhcchhh
Q 043389          154 DDEEEETEELVNQVLDEIGIDIN  176 (223)
Q Consensus       154 ~~~eee~d~l~~qvldE~~~~~~  176 (223)
                      .-..+-++..+..|+.++|++.+
T Consensus       163 ~P~~elv~~yL~EIA~ey~V~w~  185 (193)
T 3ggy_A          163 VPKEELVDLYLKEIAKTYDVPYS  185 (193)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCHH
T ss_pred             CcCHHHHHHHHHHHHHHcCCCCC
Confidence            12456788888888888888664

>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}

Probab=91.53  E-value=0.73  Score=34.22  Aligned_cols=49  Identities=14%  Similarity=0.303  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389           69 TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM  117 (223)
Q Consensus        69 ~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m  117 (223)
                      +++...||.+...|+.+|..-|+.-.....+...+..+..++..++..+
T Consensus         9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~I   57 (119)
T 2hh7_A            9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVM   57 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556789999999999999999988888888888888888887776443

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=90.78  E-value=0.071  Score=31.93  Aligned_cols=13  Identities=38%  Similarity=0.511  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHhhc
Q 043389          210 DSDLQARLDNLRR  222 (223)
Q Consensus       210 ~d~l~~RL~~Lr~  222 (223)
                      ..+|+.||++||+
T Consensus        28 i~~MqsRLaALRS   40 (40)
T 2xze_Q           28 LEAMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcC
Confidence            4569999999995

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=88.71  E-value=0.23  Score=27.42  Aligned_cols=16  Identities=31%  Similarity=0.424  Sum_probs=14.0

Q ss_pred             CCcHHHHHHHHHHhhc
Q 043389          207 GGIDSDLQARLDNLRR  222 (223)
Q Consensus       207 ~~~~d~l~~RL~~Lr~  222 (223)
                      ++.+|-|-+||.+||.
T Consensus        14 eekEDkLAqRLRALR~   29 (29)
T 3ggz_E           14 DEKEDKLAQRLRALRG   29 (29)
T ss_pred             chhhHHHHHHHHHHcC
Confidence            4679999999999994

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=88.18  E-value=0.43  Score=30.76  Aligned_cols=38  Identities=16%  Similarity=0.248  Sum_probs=14.3

Q ss_pred             HHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhcc
Q 043389          133 NEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI  173 (223)
Q Consensus       133 ~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~~  173 (223)
                      |+..+.|+++|+.+++..   +.++++++++++.+-+|...
T Consensus         1 ~e~a~EIqealsr~~g~~---diDEdEL~aELe~LeqE~~~   38 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTP---ELDEDDLEAELDALGDELLA   38 (57)
T ss_dssp             ---------------CCC---CCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHhh
Confidence            356788999999887633   24566777777777777643

>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}

Probab=81.55  E-value=4.3  Score=28.66  Aligned_cols=49  Identities=14%  Similarity=0.230  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Q 043389           69 TRHQIEKFYKLKSQLQGVSLRIQTLK-STQAMGEAMKGVTKAMGQMNRQM  117 (223)
Q Consensus        69 ~rk~~~~l~~~~~~L~~v~~ql~~a~-~~~~~~~am~~~~~~mk~~n~~m  117 (223)
                      +++...+|-+...|+.+|..-|+.-. ....+...+..+..++..++..+
T Consensus        13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~i   62 (94)
T 3aai_A           13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEMV   62 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567789999999999999998887 88888888888888888776544

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00