Citrus Sinensis ID: 043436

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIEP
cccEEEEEEEEcccEEEEEcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccEEEEEcccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccEEEEEEccccHHHHHHHHHHHccccccc
cccEEEEEEEccccEEEEccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccEEEEcccEEEEEccHHHHHHcccccEccccccccccEEEEEEcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHccccEEccccccEEEEEccccHHHHHHHHHHHHHcccEEcc
anfwasvklepsddlvikphpvhdlvqFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCkdnkidlhkgnftlsydtniprqtglsgssAIVCAALDCLLDFYKVRHLVkveirpnlilnAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDElghgiykpmdidllpplyliyaenpsdsgkvhstVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGaaskftgsggaviafcpngpsqVELLEDACRKAGFSIEP
anfwasvklepsddlvikpHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAEnpsdsgkvhSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIEP
ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIEP
************DDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAEN*****KVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDAC*********
*NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIEP
ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPS********VRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIEP
ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIEP
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ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIEP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query302 2.2.26 [Sep-21-2011]
Q93ZC9362 Glucuronokinase 1 OS=Arab yes no 1.0 0.834 0.807 1e-149
Q9LY82366 Probable glucuronokinase no no 1.0 0.825 0.768 1e-139
Q9LNJ91055 Bifunctional fucokinase/f no no 0.579 0.165 0.223 0.0003
>sp|Q93ZC9|GLAK1_ARATH Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1 Back     alignment and function desciption
 Score =  528 bits (1359), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 244/302 (80%), Positives = 274/302 (90%)

Query: 1   ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKY 60
            NFWASVKLEPS+ LVIKPHP HDLVQF SL HL+NRLQNEGYYGGVRL+MAICKVF  Y
Sbjct: 45  GNFWASVKLEPSEHLVIKPHPFHDLVQFTSLDHLLNRLQNEGYYGGVRLLMAICKVFRNY 104

Query: 61  CKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLI 120
           CK+N I LH+ NF+LSYDTNIPRQTGLSGSSAIV AAL+CLLDFY VRHL+KV++RPN++
Sbjct: 105 CKENDIQLHQANFSLSYDTNIPRQTGLSGSSAIVSAALNCLLDFYNVRHLIKVQVRPNIV 164

Query: 121 LNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAEN 180
           L+AEKELGIVAGLQDRVAQVYGGLVHMDF KEHMD+LGHGIY PMDI LLPPL+LIYAEN
Sbjct: 165 LSAEKELGIVAGLQDRVAQVYGGLVHMDFSKEHMDKLGHGIYTPMDISLLPPLHLIYAEN 224

Query: 181 PSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRR 240
           PSDSGKVHS VRQRWLDGDEFIISSMKEV  +A EG+ A+L K++SKL ELMN NFD+RR
Sbjct: 225 PSDSGKVHSMVRQRWLDGDEFIISSMKEVGSLAEEGRTALLNKDHSKLVELMNLNFDIRR 284

Query: 241 RMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300
           RMFGD+ LGA+NIEMVE+ARR GAASKFTGSGGAV+ FCP GPSQV+LLE+ CRKAGF++
Sbjct: 285 RMFGDECLGAMNIEMVEVARRVGAASKFTGSGGAVVVFCPEGPSQVKLLEEECRKAGFTL 344

Query: 301 EP 302
           +P
Sbjct: 345 QP 346
Sugar-1-kinase with a strict substrate specificity for D-glucuronic acid and ATP. Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in a salvage pathway for glucuronic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q9LY82|GLAK2_ARATH Probable glucuronokinase 2 OS=Arabidopsis thaliana GN=GLCAK2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase OS=Arabidopsis thaliana GN=FKGP PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
225452304360 PREDICTED: glucuronokinase 1 [Vitis vini 1.0 0.838 0.821 1e-149
30678384362 glucuronokinase G [Arabidopsis thaliana] 1.0 0.834 0.807 1e-147
297832776362 GHMP kinase family protein [Arabidopsis 1.0 0.834 0.811 1e-147
255560946354 ATP binding protein, putative [Ricinus c 1.0 0.853 0.798 1e-145
224055587361 predicted protein [Populus trichocarpa] 1.0 0.836 0.791 1e-145
449450060360 PREDICTED: glucuronokinase 1-like [Cucum 1.0 0.838 0.784 1e-145
297811571366 hypothetical protein ARALYDRAFT_325917 [ 1.0 0.825 0.775 1e-139
334187681366 GHMP kinase family protein [Arabidopsis 1.0 0.825 0.768 1e-138
242082452361 hypothetical protein SORBIDRAFT_08g00022 0.996 0.833 0.760 1e-136
388501044364 unknown [Medicago truncatula] 1.0 0.829 0.758 1e-135
>gi|225452304|ref|XP_002272292.1| PREDICTED: glucuronokinase 1 [Vitis vinifera] gi|296087590|emb|CBI34846.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 248/302 (82%), Positives = 276/302 (91%)

Query: 1   ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKY 60
            NFWASV+L+PS+DLV  PHP HDLVQF+SL HL+NRL  EGYYGGVRL+M+ICKVF+ Y
Sbjct: 40  GNFWASVRLQPSEDLVFLPHPTHDLVQFRSLDHLVNRLHKEGYYGGVRLLMSICKVFYNY 99

Query: 61  CKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLI 120
           CK+N IDLH GNFTLSYDTNIPRQ GLSGSSAIV AAL CLLDFYKVRHLVKVE+RPNL+
Sbjct: 100 CKENNIDLHDGNFTLSYDTNIPRQAGLSGSSAIVAAALSCLLDFYKVRHLVKVEVRPNLV 159

Query: 121 LNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAEN 180
           LNAEKE GIVAGLQDRVAQVYGGLV+MDF KE+MD LGHGIY PMDI LLPPLYLIYAEN
Sbjct: 160 LNAEKEHGIVAGLQDRVAQVYGGLVYMDFSKEYMDNLGHGIYIPMDISLLPPLYLIYAEN 219

Query: 181 PSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRR 240
           PSDSGKVHSTV+QRWL+GDEFII SM EVA +A+EG+ A+LEK+YSK A LMNHNFDLRR
Sbjct: 220 PSDSGKVHSTVQQRWLNGDEFIIKSMAEVANLASEGRTALLEKDYSKFAYLMNHNFDLRR 279

Query: 241 RMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300
           RMFG+DVLGALN+EMVE+ARR GAASKFTGSGGAV+AFCP+GPSQV+LLEDAC+KAGF I
Sbjct: 280 RMFGEDVLGALNVEMVEVARRVGAASKFTGSGGAVVAFCPDGPSQVKLLEDACQKAGFII 339

Query: 301 EP 302
           +P
Sbjct: 340 QP 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|30678384|ref|NP_566144.2| glucuronokinase G [Arabidopsis thaliana] gi|75305909|sp|Q93ZC9.1|GLAK1_ARATH RecName: Full=Glucuronokinase 1; Short=AtGlcAK1 gi|16323053|gb|AAL15261.1| AT3g01640/F4P13_18 [Arabidopsis thaliana] gi|22655334|gb|AAM98259.1| At3g01640/F4P13_18 [Arabidopsis thaliana] gi|291293793|gb|ADD92391.1| glucuronokinase [Arabidopsis thaliana] gi|332640177|gb|AEE73698.1| glucuronokinase G [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832776|ref|XP_002884270.1| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330110|gb|EFH60529.1| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255560946|ref|XP_002521486.1| ATP binding protein, putative [Ricinus communis] gi|223539385|gb|EEF40976.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224055587|ref|XP_002298553.1| predicted protein [Populus trichocarpa] gi|222845811|gb|EEE83358.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450060|ref|XP_004142782.1| PREDICTED: glucuronokinase 1-like [Cucumis sativus] gi|449529884|ref|XP_004171928.1| PREDICTED: glucuronokinase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297811571|ref|XP_002873669.1| hypothetical protein ARALYDRAFT_325917 [Arabidopsis lyrata subsp. lyrata] gi|297319506|gb|EFH49928.1| hypothetical protein ARALYDRAFT_325917 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334187681|ref|NP_196951.3| GHMP kinase family protein [Arabidopsis thaliana] gi|75311696|sp|Q9LY82.1|GLAK2_ARATH RecName: Full=Probable glucuronokinase 2 gi|7573472|emb|CAB87786.1| putative protein [Arabidopsis thaliana] gi|332004655|gb|AED92038.1| GHMP kinase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242082452|ref|XP_002441651.1| hypothetical protein SORBIDRAFT_08g000220 [Sorghum bicolor] gi|241942344|gb|EES15489.1| hypothetical protein SORBIDRAFT_08g000220 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|388501044|gb|AFK38588.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
TAIR|locus:2084208362 GLCAK "glucuronokinase G" [Ara 0.996 0.831 0.810 1.2e-134
ZFIN|ZDB-GENE-080204-36494 zgc:172049 "zgc:172049" [Danio 0.980 0.599 0.494 4e-74
TIGR_CMR|CJE_1610339 CJE_1610 "capsular biosynthesi 0.735 0.654 0.233 1.5e-06
TAIR|locus:20353621055 FKGP "AT1G01220" [Arabidopsis 0.629 0.180 0.232 0.00068
TAIR|locus:2084208 GLCAK "glucuronokinase G" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 244/301 (81%), Positives = 274/301 (91%)

Query:     2 NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYC 61
             NFWASVKLEPS+ LVIKPHP HDLVQF SL HL+NRLQNEGYYGGVRL+MAICKVF  YC
Sbjct:    46 NFWASVKLEPSEHLVIKPHPFHDLVQFTSLDHLLNRLQNEGYYGGVRLLMAICKVFRNYC 105

Query:    62 KDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLIL 121
             K+N I LH+ NF+LSYDTNIPRQTGLSGSSAIV AAL+CLLDFY VRHL+KV++RPN++L
Sbjct:   106 KENDIQLHQANFSLSYDTNIPRQTGLSGSSAIVSAALNCLLDFYNVRHLIKVQVRPNIVL 165

Query:   122 NAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENP 181
             +AEKELGIVAGLQDRVAQVYGGLVHMDF KEHMD+LGHGIY PMDI LLPPL+LIYAENP
Sbjct:   166 SAEKELGIVAGLQDRVAQVYGGLVHMDFSKEHMDKLGHGIYTPMDISLLPPLHLIYAENP 225

Query:   182 SDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRR 241
             SDSGKVHS VRQRWLDGDEFIISSMKEV  +A EG+ A+L K++SKL ELMN NFD+RRR
Sbjct:   226 SDSGKVHSMVRQRWLDGDEFIISSMKEVGSLAEEGRTALLNKDHSKLVELMNLNFDIRRR 285

Query:   242 MFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIE 301
             MFGD+ LGA+NIEMVE+ARR GAASKFTGSGGAV+ FCP GPSQV+LLE+ CRKAGF+++
Sbjct:   286 MFGDECLGAMNIEMVEVARRVGAASKFTGSGGAVVVFCPEGPSQVKLLEEECRKAGFTLQ 345

Query:   302 P 302
             P
Sbjct:   346 P 346
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0008266 "poly(U) RNA binding" evidence=IDA
GO:0004335 "galactokinase activity" evidence=IDA
GO:0004340 "glucokinase activity" evidence=IDA
GO:0006020 "inositol metabolic process" evidence=TAS
GO:0009702 "L-arabinokinase activity" evidence=IDA
GO:0042546 "cell wall biogenesis" evidence=TAS
GO:0047912 "galacturonokinase activity" evidence=IDA
GO:0047940 "glucuronokinase activity" evidence=IDA
GO:0048868 "pollen tube development" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
ZFIN|ZDB-GENE-080204-36 zgc:172049 "zgc:172049" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1610 CJE_1610 "capsular biosynthesis sugar kinase, putative" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TAIR|locus:2035362 FKGP "AT1G01220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93ZC9GLAK1_ARATH2, ., 7, ., 1, ., 4, 30.80791.00.8342yesno
Q9LY82GLAK2_ARATH2, ., 7, ., 1, ., 4, 30.76891.00.8251nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.4.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 1e-16
COG2605333 COG2605, COG2605, Predicted kinase related to gala 2e-14
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 3e-12
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 2e-07
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 4e-06
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 9e-05
TIGR01920261 TIGR01920, Shik_kin_archae, shikimate kinase 0.002
PTZ00298328 PTZ00298, PTZ00298, mevalonate kinase; Provisional 0.004
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information 
 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 35/235 (14%)

Query: 69  HKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKEL- 127
               F+L  D+ IP   GL  S+A+  A +  L  ++ V  L   E+     L  + EL 
Sbjct: 80  SLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVE-LSPEEL---AKLANKVELI 135

Query: 128 --GIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSG 185
             G  +G+       YGGLV   F+K          ++ ++I+LL  L +     P  + 
Sbjct: 136 VQGKASGIDIATI-TYGGLVA--FKK-------GFDFEKLEIELLGTLVIGDTGVPGSTK 185

Query: 186 KVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGD 245
           ++ + V +   +  E I   +  + ++  E +AA+   ++ +L ELMN N  L       
Sbjct: 186 ELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQTGDFEELGELMNINQGL------- 238

Query: 246 DVLGALNI------EMVEIARRFGA-ASKFTGS--GGAVIAFCPNGPSQVELLED 291
             L AL +      E+VE AR  GA  +K TG+  GG +IA   N      L   
Sbjct: 239 --LKALGVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEEIAETLSNR 291

Length = 307
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase Back     alignment and domain information
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 302
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 100.0
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 100.0
COG0153390 GalK Galactokinase [Carbohydrate transport and met 100.0
PLN02677387 mevalonate kinase 100.0
COG2605333 Predicted kinase related to galactokinase and meva 100.0
PRK05101382 galactokinase; Provisional 100.0
PRK05322387 galactokinase; Provisional 100.0
PRK00555363 galactokinase; Provisional 100.0
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 100.0
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 100.0
PLN02865423 galactokinase 100.0
TIGR00131386 gal_kin galactokinase. The galactokinases found by 100.0
PTZ00298328 mevalonate kinase; Provisional 100.0
PRK03926302 mevalonate kinase; Provisional 100.0
PTZ00290468 galactokinase; Provisional 100.0
PRK03817351 galactokinase; Provisional 100.0
PLN02521497 galactokinase 100.0
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.97
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.97
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.96
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.95
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.95
PLN02451370 homoserine kinase 99.95
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
PRK01123282 shikimate kinase; Provisional 99.94
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.94
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.93
PRK01212301 homoserine kinase; Provisional 99.93
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.93
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.93
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 99.93
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.93
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.92
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.92
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.91
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.91
PTZ00299336 homoserine kinase; Provisional 99.9
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.89
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.88
PRK05905258 hypothetical protein; Provisional 99.86
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.85
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 99.82
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.81
KOG0631489 consensus Galactokinase [Carbohydrate transport an 99.8
COG1907312 Predicted archaeal sugar kinases [General function 99.69
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.63
PLN02407343 diphosphomevalonate decarboxylase 99.61
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 99.6
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 99.58
COG4542293 PduX Protein involved in propanediol utilization, 99.57
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 99.48
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 99.45
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 99.4
KOG4519459 consensus Phosphomevalonate kinase [Lipid transpor 99.3
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.23
KOG1537355 consensus Homoserine kinase [Amino acid transport 99.15
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-40  Score=292.52  Aligned_cols=265  Identities=25%  Similarity=0.389  Sum_probs=225.6

Q ss_pred             CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEe
Q 043436            2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDT   79 (302)
Q Consensus         2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s   79 (302)
                      |++++|++++.++  +.+.+.++...   .    +..       ++...|+..++..+.+++..  .  +..||+++|.|
T Consensus        29 ~~~~~v~~~~s~~~~~~i~~~~~~~~---~----~~~-------~~~~~~~~~~v~~~~e~~~~--~--~~~~~~l~I~S   90 (307)
T COG1577          29 DLRVTVTISESDSNKIVIESSDLKSS---T----LER-------DEDEGYIQAAVRLASELLNQ--S--SLKPFSLEIDS   90 (307)
T ss_pred             eeeEEEEEEecCCCcEEEeccCCCCc---c----ccc-------cccchHHHHHHHHHHHHhcc--c--CCCCeEEEEec
Confidence            6899999999887  77777766433   0    111       11237888888888877642  1  23689999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeeccccccccC
Q 043436           80 NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELG  158 (302)
Q Consensus        80 ~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g  158 (302)
                      +||+|+|||||||++||++.|++.+|+.+  ++++++++++..+|. .+|.++|+ |.++++|||++++..+.       
T Consensus        91 ~iP~g~GLGSSAAVsva~i~al~~~~g~~--ls~~~l~~la~~~e~~vqG~~Sg~-D~a~~~~gg~v~~~~~~-------  160 (307)
T COG1577          91 EIPIGAGLGSSAAVSVAVIKALSAYFGVE--LSPEELAKLANKVELIVQGKASGI-DIATITYGGLVAFKKGF-------  160 (307)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHcCCCCcc-cceEEEeCCEEEEecCC-------
Confidence            99999999999999999999999999999  999999999999999 66666665 99999999999976221       


Q ss_pred             cccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 043436          159 HGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDL  238 (302)
Q Consensus       159 ~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~  238 (302)
                        .++++.++.++.++|.+++.+.+|++++..++.++++.++.....++.+.+++.++..++.++|.+.|+++|+.+|.+
T Consensus       161 --~~~~l~~~~~~~~~I~~tg~~~sT~e~V~~V~~l~~~~~~~~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~nq~L  238 (307)
T COG1577         161 --DFEKLEIELLGTLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQTGDFEELGELMNINQGL  238 (307)
T ss_pred             --CccccccccCCeEEEEEcCCcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence              366666654435999999999999999999998887778888889999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEeeCCcchHHHHHHHHHHcCCccc
Q 043436          239 RRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDACRKAGFSIE  301 (302)
Q Consensus       239 ~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~g~~~~  301 (302)
                      +..+.    +++|++| |++.++++|+ |+|+||||  ||+|+|+++ ++.++++.++|.++|+..+
T Consensus       239 L~~Lg----Vs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~-~~~~~~l~~~~~~~~i~~~  300 (307)
T COG1577         239 LKALG----VSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKN-EEIAETLSNRLEKAGIALL  300 (307)
T ss_pred             HHhcC----cCcHHHHHHHHHHHhcCccccccccCCCCceEEEEecc-chHHHHHHHHHHhcCcccc
Confidence            99996    9999999 9999999999 89999999  399999986 5568999999999998643

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism] Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
3k85_A357 Crystal Structure Of A D-Glycero-D-Manno-Heptose 1- 6e-04
2hfu_A332 Crystal Structure Of L. Major Mevalonate Kinase In 7e-04
>pdb|3K85|A Chain A, Crystal Structure Of A D-Glycero-D-Manno-Heptose 1-Phosphate Kinase From Bacteriodes Thetaiotaomicron Length = 357 Back     alignment and structure 
Iteration: 1

 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 68  LHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDF-------YKVRHLVKVEIRPNLI 120
           L   +F ++   + P  +GL  SS  V   L   +++       Y+   L   EI     
Sbjct: 94  LEPKSFKITTYNDAPAGSGLGTSSTXVVCILKAFIEWLSLPLGDYETSRLA-YEIE---- 148
Query: 121 LNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAEN 180
               K+LG+  G QD+ A  +GG  + +F +  +  +     K   +D L    ++Y   
Sbjct: 149 ---RKDLGLSGGKQDQYAAAFGGFNYXEFLQNDLVIVNPLKXKRWIVDELESSXVLYFTG 205
Query: 181 PS-DSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLR 239
            S  S  + +  ++   +G++  I +  ++ Q A + + A+L+ +  + A ++   ++ +
Sbjct: 206 RSRSSAAIINEQKKNTSEGNQTAIEAXHKIKQSAIDTKLALLKGDVGEFARILGEGWENK 265
Query: 240 RRMFG 244
           ++  G
Sbjct: 266 KKXAG 270
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex With R-Mevalonate Length = 332 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 1e-44
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 4e-30
3k17_A365 LIN0012 protein; protein structure initiative II(P 6e-30
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 1e-24
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 7e-23
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 1e-19
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 3e-17
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 4e-05
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 8e-05
1pie_A419 Galactokinase; galactose, galactosemia, transferas 2e-04
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
 Score =  154 bits (390), Expect = 1e-44
 Identities = 57/305 (18%), Positives = 126/305 (41%), Gaps = 18/305 (5%)

Query: 2   NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYC 61
           N +A   +E ++   I+ +  +D    +S       +      G   L+  +     +  
Sbjct: 38  NLYAYCTIEETNSGRIEINA-YDAQCCKSY----LSMSQLEIDGEASLIKGVYNRIIRDY 92

Query: 62  KDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLIL 121
           +     L   +F ++   + P  +GL  SS +V   L   +++     L   E       
Sbjct: 93  R-----LEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLS-LPLGDYETSRLAYE 146

Query: 122 NAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPP-LYLIYAEN 180
              K+LG+  G QD+ A  +GG  +M+F +  +  +     K   +D L   + L +   
Sbjct: 147 IERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGR 206

Query: 181 PSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRR 240
              S  + +  ++   +G++  I +M ++ Q A + + A+L+ +  + A ++   ++ ++
Sbjct: 207 SRSSAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKK 266

Query: 241 RMFGDDVLGALNIEMVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDACRKAG 297
           +M    +   +  E  ++A   GA A K +G+G  G ++      P++ E +  A     
Sbjct: 267 KMA-GAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVE--PTRKEEVVRALNNLN 323

Query: 298 FSIEP 302
             + P
Sbjct: 324 GFVMP 328
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query302
3k17_A365 LIN0012 protein; protein structure initiative II(P 100.0
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 100.0
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 100.0
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 100.0
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 100.0
1pie_A419 Galactokinase; galactose, galactosemia, transferas 100.0
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 100.0
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 100.0
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 100.0
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 100.0
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 100.0
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 100.0
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 100.0
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 100.0
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.98
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.96
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.96
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.96
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.93
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 99.93
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.93
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.91
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.91
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 99.9
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 99.89
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 99.85
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 99.84
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
Probab=100.00  E-value=4.9e-40  Score=300.15  Aligned_cols=288  Identities=16%  Similarity=0.178  Sum_probs=229.1

Q ss_pred             CceEEEEEeeCCceeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCC
Q 043436            2 NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNI   81 (302)
Q Consensus         2 d~~~~v~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~i   81 (302)
                      |++++|+++|+++..+.+.++...+.|...+.+.      +..++++|++++++.+.+++.+.|.+.  .|++|.|.++|
T Consensus        36 ~~~~~v~v~~~~~~~i~s~~~~~~~~~~~~~~~~------~~~~~~~yv~~~i~~~~~~~~~~g~~~--~g~~i~i~s~i  107 (365)
T 3k17_A           36 NRYITLTLEDSERNELWIPHYENPVSWPIGGELK------PDGEHWTFTAEAINIATTFLKSEGIEL--TPVKMVIETEL  107 (365)
T ss_dssp             EEEEEEEEEECSSCEEECTTCSSCBCCCTTSCCC------CSCGGGHHHHHHHHHHHHHHHHTTCCC--CCEEEEEEESS
T ss_pred             cCcEEEEEEECCCcEEEecCCCcceeeecccCCC------CCCChHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEEcCC
Confidence            6799999999988667777665556665432111      112456999999999998887666643  68999999999


Q ss_pred             CC----CCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEe-ecccccc
Q 043436           82 PR----QTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMD-FRKEHMD  155 (302)
Q Consensus        82 P~----~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~-~~~~~~~  155 (302)
                      |.    ++|||||||+++|++.|++++++++  ++.++|+++|+.+|+ ++| ++|.+|+++++|||+++++ |++.++.
T Consensus       108 P~~~g~~~GLgSSaa~~va~~~al~~~~~~~--l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg~~~~~~~~~~~~~  184 (365)
T 3k17_A          108 IDQSGAKYGLGSSAAATVAVINALMTKFYPE--ISMLKKFKLAALSHLVVQG-NGSCGDIASCMYGGWIAYTTFDQEWVK  184 (365)
T ss_dssp             BCTTSCBCSSCHHHHHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCSEEEEECCCHHHHH
T ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCC-CCCcccHHHHhcCCEEEEecCCHHHhh
Confidence            96    6799999999999999999999999  999999999999999 777 6677899999999999876 5432111


Q ss_pred             cc-C-------------cccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 043436          156 EL-G-------------HGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAIL  221 (302)
Q Consensus       156 ~~-g-------------~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~  221 (302)
                      .. +             ...+.+++.+.- +++|++|+.+++|+++++.++..+...++.....++++.+++.++.++|.
T Consensus       185 ~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~  263 (365)
T 3k17_A          185 HRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFH  263 (365)
T ss_dssp             HHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 0             012344443322 79999999999999999988776655555566677778888999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHhhcC--CCCCCCccHH-HHHHHHHcCCceeecCCC--ceEEEEeeCCcchHHHHHHHHHHc
Q 043436          222 EKNYSKLAELMNHNFDLRRRMFG--DDVLGALNIE-MVEIARRFGAASKFTGSG--GAVIAFCPNGPSQVELLEDACRKA  296 (302)
Q Consensus       222 ~~d~~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~-l~~~a~~~g~gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~  296 (302)
                      ++|++.|+++|+++|..++++..  ...+++|++| +++.+++.|+.+||||||  ||+++|+++ ++.++++.++|++.
T Consensus       264 ~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~~Ga~ak~sGAGgGg~vial~~~-~~~~~~l~~~l~~~  342 (365)
T 3k17_A          264 TKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKT-KELAEKLVNEWEKL  342 (365)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTSEEEECTTCSSSEEEEEESS-HHHHHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHhcCCEEEecCCCCCCEEEEEECC-HHHHHHHHHHHHHC
Confidence            99999999999999999988750  0024889999 999999998778999999  599999986 56789999999999


Q ss_pred             CCcccC
Q 043436          297 GFSIEP  302 (302)
Q Consensus       297 g~~~~~  302 (302)
                      |+..++
T Consensus       343 g~~~~~  348 (365)
T 3k17_A          343 GIKHLP  348 (365)
T ss_dssp             TCEECC
T ss_pred             CCEEEE
Confidence            998654
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 302
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 3e-14
d1k47a2135 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PM 4e-11
d1kkha1180 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met 5e-08
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 4e-06
d1piea1205 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact 5e-06
d1k47a1194 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) 7e-05
d1s4ea1176 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ 4e-04
d1wuua1215 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi 8e-04
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate kinase
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 24/148 (16%)

Query: 170 LPPLYLIYAENPSDSGKVHST------VRQRWLDGDEFIISSMKEVAQMAAEGQ------ 217
           LP L ++      ++    ST      VR R +   E +   +  +  ++ E +      
Sbjct: 2   LPALQILLT----NTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEM 57

Query: 218 -AAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGS--GGA 274
            AA + + Y  L ELM+ N      +    V  A   ++ ++    G  SK TG+  GG 
Sbjct: 58  AAAPVPEQYLVLEELMDMNQHHLNAL---GVGHASLDQLCQVTAAHGLHSKLTGAGGGGC 114

Query: 275 VIAFCPNG--PSQVELLEDACRKAGFSI 300
            I     G   ++VE  + A    GF  
Sbjct: 115 GITLLKPGLERAKVEAAKQALTGCGFDC 142
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 135 Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205 Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 194 Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176 Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query302
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.9
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.88
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.87
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.83
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.8
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.77
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.75
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.74
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.72
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.63
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.6
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.6
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.55
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.47
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 98.87
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.74
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 98.66
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.84
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 96.63
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.90  E-value=2.7e-23  Score=172.77  Aligned_cols=133  Identities=17%  Similarity=0.166  Sum_probs=109.4

Q ss_pred             CceEEEEEeeCCc--eeEeccCCCCcc--eeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEE
Q 043436            2 NFWASVKLEPSDD--LVIKPHPVHDLV--QFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSY   77 (302)
Q Consensus         2 d~~~~v~~~~~~~--~~~~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i   77 (302)
                      |++++++++|+++  +.+.|.++++.-  .++..+ +.    ..+...|.+|++.++..+.+    .+..+ ..||+|.|
T Consensus        49 ~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~i~~l~~----~~~~~-~~G~~i~i  118 (205)
T d1piea1          49 TIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDE-VE----KKDGELWSNYVKGMIVMLKG----AGYEI-DKGFELLI  118 (205)
T ss_dssp             EEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTC-TT----SCCTTCTHHHHHHHHHHHHH----TTCCC-CSCEEEEE
T ss_pred             cceEEEEEecCCCCeeeeecCCCCccceeeccccc-cc----cccccchhHHHHHHHHHHHH----hCCcc-ccCeEEEE
Confidence            6899999999977  899998876533  333221 11    11124588999998887765    34433 46999999


Q ss_pred             EeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeE
Q 043436           78 DTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVH  146 (302)
Q Consensus        78 ~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~  146 (302)
                      .|+||.|+|||||||++||++.|++++++++  +++.+++++|+++|+ ++|.+||.|||+++++||...
T Consensus       119 ~s~iP~gsGLgSSAAl~va~~~al~~~~~~~--~~~~~ia~~a~~~E~~~~g~~~G~~Dq~as~~g~~~~  186 (205)
T d1piea1         119 KGEIPTASGLSSSASLELLVGVVLDDLFNLN--VPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKK  186 (205)
T ss_dssp             EECSCTTSSSCHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTE
T ss_pred             ecCCccccccCccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHhcCCCe
Confidence            9999999999999999999999999999999  999999999999999 899999999999999999543
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure