Citrus Sinensis ID: 043458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730------
Protein Sequence
KKKKAFYLLCDSAASSLSLSPPSFRFRAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTALGDLLLHLSLDSLVRLLLVSITMGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGGGNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHSSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQH
Secondary Structure (PSIPRED)
cccccEEEEcccccccccccccccccccccccEEcccEEEEEEccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHcEEEEEEcccccccHHHHHHHHHHHHHccHHHHHHHHHEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHccccEEcccEEEEEEccccccccccccEEEEEEEEEcHHHHHHHcccccccccHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcHHHccccccccEEEHHcccEEEEcccEEEEEccHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHEEEEccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEccccccccEcccccccccccccccEEccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHEEHHcccHHHcccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHccHHHEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEEEEccccccEEEccccEcEEEEEEcHHHHHHccHcccEEEHHHHHcccccccc
Coil and Loop (DISEMBL)
KKKKAFYLLCDsaasslslsppsfrfrahKQKLVSFDSVLIKisdlrslpqafsckFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLinlpstgrLRIFRTALGDLLLHLSLDSLVRLLLVSITMGtlasrnstinnvptggvqqptgslssgrfasnnlpVALSqlshgsshghsgvanrggisvvgnpgfssntngvggsipgilptsaaignrnlgqgmgvspilgnagpritssmgnmvgggnigrsmgsggglsvpsglaSRLNltansgsgslnvqgqnrlmsgvlpqgspqvismlgnsyptaggplsqshvnnlssmgmlndvnsndsspfdinndfpqltsrpssaggpqgqlgslrkqglgvspivqqnqefsiqnedfpalpgykggnaeygmdlhqKEQLHENTMSMMQSQHFsmgrsagfnlggtytshrpqqqqqhapsvsssgvsfssvnnqdllhlhgsdmfpsshssyhsqtsgppgiglrplnsqnpvsgmgsYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMKSIQaahstpdpfglLGLLSVikmsdpdltslalgidlttlglnlnstenlhktfgspwsdepakgdpeftvpqcyyakqppalhqgyfskFTVETLFYIFYSMPKDEAQLYAANELYnrgwfyhkehrlwfirvpnveplvktnayergsyhcfdpntfetirkdnFVVHYEMlekrpalpqh
Flexible Loop (DISEMBL)
KKKKAFYLLCdsaasslslsppsFRFRAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTALGDLLLHLSLDSLVRLLLVSITMGTlasrnstinnvptggVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGGGNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHSSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMlekrpalpqh
Low Complexity Region (SEG)
KKKKAFYLLCDsaasslslsppsfrfrAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTAlgdlllhlsldslvrlllvsITMGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLshgsshghsgVANRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVgggnigrsmgsggglsvpsglasRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRPQQQQQHAPsvsssgvsfssvNNQDLLHLHGsdmfpsshssyhsqtsGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQH
Disordered region (IsUnstruct)
*****FYLLCDSA**********FRFRAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTALGDLLLHLSLDSLVRLLLVSITMGTLAS************************************************************************IPGILPTSAAIGN***************************************************************************************************************************************************************************************************************************************************************************************************************************************************PFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTF*************EFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEML*********
Disordered Region (DISOPRED)
***KAFY*LCDSAASSLSLSPPSFRFRAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTALGDLLLHLSLDSLVRLLLV************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************TVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIR****************SYHCFDPNTFETIRKDNFVVHYEMLE*RP*****
Disordered Region (DISEMBL)
KKKKAFYLLCDSAASSLSLSPPSFRFRAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTALGDLLLHLSLDSLVRLLLVSITMGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQ**********GVANRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGGGNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTS************GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYT********************FSSVNNQDLLHLHGSDMF**************PGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQH
Disordered Region (DISPRO)
*KKKAFYLLCDSAASSLSLSPPSFRFRAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTALGDLLLHLSLDSLVRLLLVSITMGT*****************************SNNLPVALSQLSHGSSHGHSGVANRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGGGNIGRSMGSGGGLSVPSGLASRLNLTANSGS******GQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLS********SMGMLND**SNDSSPFDINNDFPQLTSRP***********************************D*************************ENTM***********************************************************************************************************************************AHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KKKKAFYLLCDSAASSLSLSPPSFRFRAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGIKSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTALGDLLLHLSLDSLVRLLLVSITMGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGGGNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHSSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	736	2.2.26 [Sep-21-2011]
Q52JK6	603	Probable NOT transcriptio	N/A	no	0.809	0.988	0.797	0.0
Q9FPW4	614	Probable NOT transcriptio	no	no	0.748	0.897	0.673	0.0
Q9NZN8	540	CCR4-NOT transcription co	yes	no	0.228	0.311	0.455	7e-37
Q8C5L3	540	CCR4-NOT transcription co	no	no	0.228	0.311	0.455	8e-37
P87240	306	General negative regulato	yes	no	0.222	0.535	0.418	4e-31
Q94547	585	Regulator of gene activit	yes	no	0.226	0.285	0.394	8e-29
P06100	191	General negative regulato	yes	no	0.218	0.842	0.315	3e-15
Q8K0V4	751	CCR4-NOT transcription co	no	no	0.148	0.145	0.324	4e-11
O75175	753	CCR4-NOT transcription co	no	no	0.148	0.144	0.324	5e-11
O13870	640	General negative regulato	no	no	0.141	0.162	0.330	1e-07

>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/607 (79%), Positives = 534/607 (87%), Gaps = 11/607 (1%)

Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           GTL SRN+ INNVP+ GVQQ   +LS GRF  NNLP ALSQ+  G+SHGHSG+ +RGG S
Sbjct: 3   GTLTSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPSALSQIPQGNSHGHSGMTSRGGTS 62

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
           VVGNPG+SSNTNGVGGSIPGILPT AAIGNR+   G+GVSPILGNAGPR+T+S+GN+VGG
Sbjct: 63  VVGNPGYSSNTNGVGGSIPGILPTFAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNIVGG 122

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGRS+ SG GLSVP GLASRLN+ ANSGSG+LNVQG NRLMSGVL Q SPQV+SMLGN
Sbjct: 123 GNIGRSISSGAGLSVP-GLASRLNMNANSGSGNLNVQGPNRLMSGVLQQASPQVLSMLGN 181

Query: 315 SYPTAGGPLSQSHVN---NLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYP AGGPLSQ+HV    N +SMG+LNDVNSND SPFDIN DFPQL+SRPSSAGGPQGQL
Sbjct: 182 SYP-AGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDIN-DFPQLSSRPSSAGGPQGQL 239

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
           GSLRKQGL  SPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MD HQKEQLH+NT+SMMQ 
Sbjct: 240 GSLRKQGL--SPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQ 297

Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
           QHFSMGRSAGFNLGGTY+S+RPQQQ QHAPSVSS GVSFS++NNQDLL LHGSD+F SSH
Sbjct: 298 QHFSMGRSAGFNLGGTYSSNRPQQQLQHAPSVSSGGVSFSNINNQDLLSLHGSDVFQSSH 357

Query: 492 SSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRN 549
           SSY  Q  GPPGIGLRPLNS   VSG+GSYDQL+Q   Q+  Q  FRLQQMS + Q FR+
Sbjct: 358 SSYQQQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFRD 417

Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
           Q +KS+Q+    PDPFG+LGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS ENL+KTFGS
Sbjct: 418 QSLKSMQS-QVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGS 476

Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
           PWSDEPAKGDPEFTVPQCYYAKQPP L+Q YFSKF ++TLFYIFYSMPKDEAQLYAANEL
Sbjct: 477 PWSDEPAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANEL 536

Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
           YNRGWFYH+EHRLWF+RV N+EPLVKTNAYERGSY CFDPNT+ETI KDNFV+H EMLEK
Sbjct: 537 YNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEK 596

Query: 730 RPALPQH 736
           RP LPQH
Sbjct: 597 RPVLPQH 603

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.
Nicotiana benthamiana (taxid: 4100)

>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/603 (67%), Positives = 471/603 (78%), Gaps = 52/603 (8%)

Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           GTL SRNS++N++P+ GVQQP GS SSGRFASNNLPV LSQLSHGSSHGHSG+ NR G++
Sbjct: 61  GTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNR-GLN 119

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
           VVGNPGFSSN NGVGGSIPGIL TSA + NRN   GMG+S +LGN+GPRIT+SMGNMVGG
Sbjct: 120 VVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGG 179

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GN+GR++ S GGLS+P GL+SRLNL ANSGSG LNVQGQNR+M GVLPQGS QV+SMLGN
Sbjct: 180 GNLGRNI-SSGGLSIP-GLSSRLNLAANSGSG-LNVQGQNRMMGGVLPQGS-QVMSMLGN 235

Query: 315 SYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSL 374
           SY T GGPLSQ+HV ++++M ML+D + NDSS FDINNDFPQLTSRP SAGG QG LGSL
Sbjct: 236 SYHTGGGPLSQNHVQSVNNM-MLSD-HPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSL 293

Query: 375 RKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHF 434
           RKQGLGV P+VQQNQEFSIQNEDFPALPGYKGGN+EY MDLHQKEQLH+N MSMM SQ+F
Sbjct: 294 RKQGLGV-PLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNF 352

Query: 435 SMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHSSY 494
           SMGRS GFNLG TY+SHRPQQQ QH                                   
Sbjct: 353 SMGRSGGFNLGATYSSHRPQQQPQHT---------------------------------- 378

Query: 495 HSQTSGPPGIGLRPLNSQNPVSGMGSYD--QLVQYQHQNPSQFRLQQMSAVNQSFRNQDM 552
            S T G  G+GLRPL+S N VS +G YD       QHQN SQF +QQMS++NQ FR+ +M
Sbjct: 379 -SSTGGLQGLGLRPLSSPNAVSSIG-YDQLIQQYQQHQNQSQFPVQQMSSINQ-FRDSEM 435

Query: 553 KSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWS 612
           KS Q   S  DPF LLGLL V+  S+P+LTSLALGIDLTTLGL+LNST NL+KTF SPW+
Sbjct: 436 KSTQ---SEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWT 492

Query: 613 DEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNR 672
           +EPAK + EFTVP CYYA +PP L +  F +F+ E LFY FYSMPKDEAQLYAA+ELY R
Sbjct: 493 NEPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYER 552

Query: 673 GWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPA 732
           GWFYHKE R+WF RV   EPLV+   YERG+Y   DPN+F+T+RK++FV+ YE++EKRP+
Sbjct: 553 GWFYHKELRVWFFRV--GEPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPS 610

Query: 733 LPQ 735
           L Q
Sbjct: 611 LLQ 613

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1

 Score =  156 bits (394), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 12/180 (6%)

Query: 563 DPFGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAK-GD 619
           D FG++GLL+ I+   +DP +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 412

Query: 620 PEFTVPQCYYA-----KQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGW 674
            +F VP  Y        +  A+  G + +   + LFY++Y    D  QL AA EL+NR W
Sbjct: 413 IDFHVPSEYLTNIHIRDKLAAIKLGRYGE---DLLFYLYYMNGGDVLQLLAAVELFNRDW 469

Query: 675 FYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
            YHKE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct: 470 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2

 Score =  155 bits (393), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 12/180 (6%)

Query: 563 DPFGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAK-GD 619
           D FG++GLL+ I+   +DP +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 412

Query: 620 PEFTVPQCYYA-----KQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGW 674
            +F VP  Y        +  A+  G   ++  + LFY++Y    D  QL AA EL+NR W
Sbjct: 413 IDFHVPSEYLTNIHIRDKLAAIKLG---RYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW 469

Query: 675 FYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
            YHKE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct: 470 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528

The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2

 Score =  137 bits (344), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 99/172 (57%), Gaps = 8/172 (4%)

Query: 565 FGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTEN---LHKTFGSPWSDEPAK---G 618
           + L  LL +I+M D ++++L LG DL  LG +L   E    +     SPW++   K    
Sbjct: 130 YMLESLLPIIRMEDSEMSTLQLGCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVS 189

Query: 619 DPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHK 678
            P F +P CY    PP      F +F+ ETLFYIFY+MP+D  Q  AA EL NR W +HK
Sbjct: 190 QPMFKLPACYKNVNPPPAISKIF-QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248

Query: 679 EHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
           E R+W   VP ++PL +T  +ERG Y  FDP  ++ I+KD F++ Y  LE R
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKD-FLLMYAALEDR 299

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2 SV=2

 Score =  129 bits (324), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 8/175 (4%)

Query: 565 FGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-DPE 621
           FG++GLL+ I+   +DP+L +L+LG DLT LGLNLNS E+LH TF  P+  +P +  D E
Sbjct: 404 FGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAGPFVAQPCRAQDVE 463

Query: 622 FTVPQCY---YAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHK 678
           F VP  Y   +A +   L      K   + LF++FY+   D  QL AA EL++R W YH 
Sbjct: 464 FNVPPEYLINFAIRD-KLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHV 522

Query: 679 EHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPAL 733
           E ++W  R+P ++   K    ERG+++ FD  +++ + K  F +  E L+K P +
Sbjct: 523 EEKIWITRIPGIDQYEKNGTKERGTFYYFDAQSWKRLSKV-FQIDPEKLDKCPNI 576

Essential for viability. Acts as a suppressor of position effect variegation (PEV) at the white locus and regulates the expression of several unrelated genes.

Drosophila melanogaster (taxid: 7227)

>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 26/187 (13%)

Query: 563 DPFGLLGLLSVIKMSDPDLTS-----LALGIDLTT----LGLNLNSTEN-LHKTFGSPWS 612
           + FGL  L+ ++K+ D +L+S     + LG DL++    LG+  +S ++ +  TF SPW+
Sbjct: 2   EKFGLKALVPLLKLEDKELSSTYDHSMTLGADLSSMLYSLGIPRDSQDHRVLDTFQSPWA 61

Query: 613 DEP-AKGDPEFTVPQCYY--------AKQPPALH-----QGYFSKFTVETLFYIFYSMPK 658
           +   ++ +P F  P+ +            PP  +     Q   + F  ETLF++FY  P 
Sbjct: 62  ETSRSEVEPRFFTPESFTNIPGVLQSTVTPPCFNSIQNDQQRVALFQDETLFFLFYKHPG 121

Query: 659 DEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAY-ERGSYHCFDPNTFETIRK 717
              Q     EL  R W YHK  + W  + P +EP+V  +   ERGSY  FDP  +E  ++
Sbjct: 122 TVIQELTYLELRKRNWRYHKTLKAWLTKDPMMEPIVSADGLSERGSYVFFDPQRWEKCQR 181

Query: 718 DNFVVHY 724
           D F++ Y
Sbjct: 182 D-FLLFY 187

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 620 PEFTVPQCYYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFY 676
           P    P   Y  Q P  H     ++ + + ETLF+IFY +   +AQ  AA  L  + W +
Sbjct: 637 PRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRF 696

Query: 677 HKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
           H ++ +WF R  + EP   T+ +E+G+Y  FD   +   +K+ F   Y  LE R
Sbjct: 697 HTKYMMWFQR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 748

The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 620 PEFTVPQCYYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFY 676
           P    P   Y  Q P  H     ++ + + ETLF+IFY +   +AQ  AA  L  + W +
Sbjct: 639 PRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRF 698

Query: 677 HKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
           H ++ +WF R  + EP   T+ +E+G+Y  FD   +   +K+ F   Y  LE R
Sbjct: 699 HTKYMMWFQR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 750

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 17/121 (14%)

Query: 620 PEFTVPQC------YYAKQP-PALHQGYFSKFTV-ETLFYIFYSMPKDEAQLYAANELYN 671
           P++ +P+       YY +QP P       ++    +TLFY+FY  P    Q  A  EL  
Sbjct: 518 PQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVDPDTLFYMFYYRPGTYQQYIAGQELKK 577

Query: 672 RGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFE----TIRKDNFVVHYEML 727
           + W +HK++  WF R  + EP + T+ +E GSY  FD   FE      +K +F   Y+ L
Sbjct: 578 QSWRFHKKYTTWFQR--HEEPKMITDEFESGSYRYFD---FEGDWVQRKKADFRFTYQYL 632

Query: 728 E 728
           E
Sbjct: 633 E 633

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	736
359386150	603	VirE2-interacting protein 2-like protein	0.819	1.0	1.0	0.0
255578749	664	CCR4-NOT transcription complex subunit,	0.812	0.900	0.887	0.0
356539082	647	PREDICTED: probable NOT transcription co	0.805	0.916	0.861	0.0
356542593	658	PREDICTED: probable NOT transcription co	0.802	0.898	0.859	0.0
359479011	666	PREDICTED: probable NOT transcription co	0.815	0.900	0.861	0.0
356558361	662	PREDICTED: probable NOT transcription co	0.807	0.897	0.840	0.0
449460985	658	PREDICTED: probable NOT transcription co	0.809	0.905	0.815	0.0
357454057	710	CCR4-NOT transcription complex subunit [	0.804	0.833	0.764	0.0
297746154	628	unnamed protein product [Vitis vinifera]	0.763	0.894	0.812	0.0
356550237	628	PREDICTED: probable NOT transcription co	0.759	0.890	0.787	0.0

>gi|359386150|gb|AEV43364.1| VirE2-interacting protein 2-like protein [Citrus sinensis]

 Score = 1226 bits (3172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/603 (100%), Positives = 603/603 (100%)

Query: 134 MGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGI 193
           MGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGI
Sbjct: 1   MGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGI 60

Query: 194 SVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVG 253
           SVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVG
Sbjct: 61  SVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVG 120

Query: 254 GGNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLG 313
           GGNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLG
Sbjct: 121 GGNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLG 180

Query: 314 NSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGS 373
           NSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGS
Sbjct: 181 NSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGS 240

Query: 374 LRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQH 433
           LRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQH
Sbjct: 241 LRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQH 300

Query: 434 FSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHSS 493
           FSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHSS
Sbjct: 301 FSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHSS 360

Query: 494 YHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMK 553
           YHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMK
Sbjct: 361 YHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMK 420

Query: 554 SIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSD 613
           SIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSD
Sbjct: 421 SIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSD 480

Query: 614 EPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRG 673
           EPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRG
Sbjct: 481 EPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRG 540

Query: 674 WFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPAL 733
           WFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPAL
Sbjct: 541 WFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPAL 600

Query: 734 PQH 736
           PQH
Sbjct: 601 PQH 603

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578749|ref|XP_002530232.1| CCR4-NOT transcription complex subunit, putative [Ricinus communis] gi|223530236|gb|EEF32138.1| CCR4-NOT transcription complex subunit, putative [Ricinus communis]

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/607 (88%), Positives = 569/607 (93%), Gaps = 9/607 (1%)

Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           GTL SRN+T+NNVP+GG+QQPTGSLSSGRFASNN+PV LSQLSHGSSHGHSGV NRGGIS
Sbjct: 62  GTLTSRNTTLNNVPSGGIQQPTGSLSSGRFASNNIPV-LSQLSHGSSHGHSGVTNRGGIS 120

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
           VVGNPGFSSNTNGVGGSIPGILPTSA IGNRN   G+GVS ILGN GPRITSSMGNMVGG
Sbjct: 121 VVGNPGFSSNTNGVGGSIPGILPTSAGIGNRNAVPGVGVSQILGNTGPRITSSMGNMVGG 180

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGRS+ SGGGLSVP GLASRLNLTANSGSGSL+V GQNRLMSGVLPQGSPQVISMLG+
Sbjct: 181 GNIGRSISSGGGLSVP-GLASRLNLTANSGSGSLSVPGQNRLMSGVLPQGSPQVISMLGS 239

Query: 315 SYPTAGGPLSQSHV---NNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYP+  GPLSQSHV   NNLSSMGMLNDVNSNDSSP+DINNDFP LTSRP+SAGGPQGQL
Sbjct: 240 SYPSGRGPLSQSHVQAVNNLSSMGMLNDVNSNDSSPYDINNDFPVLTSRPNSAGGPQGQL 299

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
           GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MDLHQKEQLH+NTMSMMQS
Sbjct: 300 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYSMDLHQKEQLHDNTMSMMQS 359

Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
           QHF MGRSAGFNLGG ++S+RPQQQQQHAP+VSSSGVSFS VNNQDLLH  GSD+FPSSH
Sbjct: 360 QHFPMGRSAGFNLGGNFSSYRPQQQQQHAPAVSSSGVSFSPVNNQDLLH--GSDIFPSSH 417

Query: 492 SSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRN 549
           S+YHSQT+GPPGIGLRPLNS N VSG+GSYDQL+Q   Q+ +Q  FRLQQMSAVNQSFR+
Sbjct: 418 STYHSQTNGPPGIGLRPLNSPNTVSGIGSYDQLIQQYQQHQNQSQFRLQQMSAVNQSFRD 477

Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
           Q MKS+QAA S PDPFGLLGLLSVI+MSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS
Sbjct: 478 QGMKSMQAAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 537

Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
           PWSDEPAKGDPEF VPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL
Sbjct: 538 PWSDEPAKGDPEFNVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 597

Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
           YNRGWFYHKEHRLWFIRVPNVEPLVKTN YERGSYHCFDPNTFE IRKDNFV+HYEMLEK
Sbjct: 598 YNRGWFYHKEHRLWFIRVPNVEPLVKTNTYERGSYHCFDPNTFEIIRKDNFVLHYEMLEK 657

Query: 730 RPALPQH 736
           RPALPQH
Sbjct: 658 RPALPQH 664

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539082|ref|XP_003538029.1| PREDICTED: probable NOT transcription complex subunit VIP2-like [Glycine max]

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/606 (86%), Positives = 560/606 (92%), Gaps = 13/606 (2%)

Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           GTL SRNSTINNVP+GGVQQPTGSLSSGRF SNNLPVALSQLSHGSS GHSGV NRGGIS
Sbjct: 49  GTLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSLGHSGVTNRGGIS 108

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
           VVGNPGFSS+TNGVGGSIPGILPTSAA+GNRN   G+GV+PILGNAGPRITSS+GNMVGG
Sbjct: 109 VVGNPGFSSSTNGVGGSIPGILPTSAAVGNRNAVPGLGVNPILGNAGPRITSSVGNMVGG 168

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGR+ G    LSVP GL+SRLNL ANSGSG L +QGQNRLMSGVLPQGSPQVISMLGN
Sbjct: 169 GNIGRTGGG---LSVP-GLSSRLNLGANSGSGGLGMQGQNRLMSGVLPQGSPQVISMLGN 224

Query: 315 SYPTAGGPLSQSHV---NNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYP+ GGPLSQSHV   +NL+SMGMLND+NSNDSSPFDIN DFPQLT+RPSSAGGPQGQL
Sbjct: 225 SYPS-GGPLSQSHVQAVSNLNSMGMLNDMNSNDSSPFDIN-DFPQLTTRPSSAGGPQGQL 282

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
           GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MD+HQKEQLH+NT+ MMQS
Sbjct: 283 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNTVPMMQS 342

Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
           QHFSMGRSAGF+LGGTY+SHR  QQQQHAPSVSS  VSFSSVNNQD+LHLHGSD+FPSSH
Sbjct: 343 QHFSMGRSAGFSLGGTYSSHR-AQQQQHAPSVSSGNVSFSSVNNQDILHLHGSDIFPSSH 401

Query: 492 SSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRN 549
           S+YHSQTSGPPGIGLRPLNS N VSGMGSYDQL+Q   Q+ +Q  FRLQ MSAVNQSFR+
Sbjct: 402 STYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQ-MSAVNQSFRD 460

Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
           Q MKSIQ A   PDPFGLLGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS+ENLHKTFGS
Sbjct: 461 QGMKSIQTAQPAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGS 520

Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
           PW+DE AKGDPEFTVPQCY+AKQPPALHQGYFSKF+VETLFYIFYSMPKDEAQLYAA+EL
Sbjct: 521 PWTDESAKGDPEFTVPQCYFAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAASEL 580

Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
           YNRGWFYHKEHRLW IRVPN+EPLVKTN YERGSYHCFDP+ FET+RKDNFV+HYEMLEK
Sbjct: 581 YNRGWFYHKEHRLWLIRVPNMEPLVKTNTYERGSYHCFDPSIFETVRKDNFVLHYEMLEK 640

Query: 730 RPALPQ 735
           RP LPQ
Sbjct: 641 RPHLPQ 646

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542593|ref|XP_003539751.1| PREDICTED: probable NOT transcription complex subunit VIP2-like [Glycine max]

 Score =  993 bits (2568), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/606 (85%), Positives = 557/606 (91%), Gaps = 15/606 (2%)

Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           GTL SRNSTINNVP+GGVQQPTGSLSSGRF SNNLPVALSQLSHGSSH  SG+ NRGGIS
Sbjct: 62  GTLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSH--SGITNRGGIS 119

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
           VVGNPGFSS+TNGVGGSIPGILPTSAA+GNRN   G+GV+PILGNAGPRITSS+GNMVGG
Sbjct: 120 VVGNPGFSSSTNGVGGSIPGILPTSAAVGNRNAVPGLGVNPILGNAGPRITSSVGNMVGG 179

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGR+ G    LSVP+ LASRLNL ANSGSG L +QG NRLMSGVLPQGSPQVISMLGN
Sbjct: 180 GNIGRTGGG---LSVPA-LASRLNLGANSGSGGLGMQGPNRLMSGVLPQGSPQVISMLGN 235

Query: 315 SYPTAGGPLSQSHV---NNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYP+ GGPLSQSHV   +NL+SMGMLNDVN+NDSSPFDIN DFPQLTSRPSSAGGPQGQL
Sbjct: 236 SYPS-GGPLSQSHVQAVSNLNSMGMLNDVNTNDSSPFDIN-DFPQLTSRPSSAGGPQGQL 293

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
           GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MD+HQKEQLH+N + MMQS
Sbjct: 294 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQS 353

Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
           QHFSMGRSAGF+LGGTY+SHR  QQQQHAPSVSS  VSFSSVNNQDLLHLHGSD+FPSSH
Sbjct: 354 QHFSMGRSAGFSLGGTYSSHR-AQQQQHAPSVSSGNVSFSSVNNQDLLHLHGSDIFPSSH 412

Query: 492 SSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRN 549
           S+YHSQTSGPPGIGLRPLNS N VSGMGSYDQL+Q   Q+ +Q  FRLQ MSAVNQSFR+
Sbjct: 413 STYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQ-MSAVNQSFRD 471

Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
           Q MKSIQ A   PDPFGLLGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS+ENLHKTFGS
Sbjct: 472 QGMKSIQTAQPAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGS 531

Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
           PWSDE AKGDPEFTVPQCYYAKQPPALHQGYFSKF+VETLFY+FYSMPKDEAQ YAA+EL
Sbjct: 532 PWSDESAKGDPEFTVPQCYYAKQPPALHQGYFSKFSVETLFYLFYSMPKDEAQFYAASEL 591

Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
           YNRGWFYHKEHRLWFIRVPN+EPLVKTN YERGSYHCFDP+ FET+RKDNFV+HYEMLEK
Sbjct: 592 YNRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFDPSIFETVRKDNFVLHYEMLEK 651

Query: 730 RPALPQ 735
           RP LPQ
Sbjct: 652 RPHLPQ 657

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479011|ref|XP_002284532.2| PREDICTED: probable NOT transcription complex subunit VIP2-like [Vitis vinifera]

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/607 (86%), Positives = 569/607 (93%), Gaps = 7/607 (1%)

Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           GTLASRNSTIN+VP+GGVQQPTG+LSSGR+ASN+LPVALSQ+SHGSSHGHSGVANRGGIS
Sbjct: 62  GTLASRNSTINSVPSGGVQQPTGNLSSGRYASNSLPVALSQISHGSSHGHSGVANRGGIS 121

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
           VVG+PG+SS+TNGVGGSIPGILPTSAAI NR+   G+GVSPILGNAGPRITSSMGN+VGG
Sbjct: 122 VVGSPGYSSSTNGVGGSIPGILPTSAAIANRSAVPGLGVSPILGNAGPRITSSMGNIVGG 181

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGRS+ SGGGLSVP G+ASRLNL ANSGSGSLNVQG NRLMSGVL Q SPQVISMLGN
Sbjct: 182 GNIGRSISSGGGLSVP-GIASRLNLAANSGSGSLNVQGPNRLMSGVLQQASPQVISMLGN 240

Query: 315 SYPTAGGPLSQSHV---NNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYP+AGGPLSQ HV   NNLSSMGMLNDVNSN++SPFDIN DFPQLTSRPSS+GGPQGQL
Sbjct: 241 SYPSAGGPLSQGHVQTVNNLSSMGMLNDVNSNENSPFDIN-DFPQLTSRPSSSGGPQGQL 299

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
           GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MDLHQKEQ H+NT+SMMQS
Sbjct: 300 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQFHDNTVSMMQS 359

Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
           QHFSMGRSAGFNLGG+Y+SHRPQQQQQHAP+VSS GVSFS VNNQDLLHLHGSD+FPSSH
Sbjct: 360 QHFSMGRSAGFNLGGSYSSHRPQQQQQHAPAVSSGGVSFSPVNNQDLLHLHGSDIFPSSH 419

Query: 492 SSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRN 549
           S+YHSQTSGPPGIGLRPLNS N VSGMGSYDQL+Q   Q+ +Q  FRLQQMSAV+Q+FR+
Sbjct: 420 STYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQQMSAVSQAFRD 479

Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
           Q MKS+QA  + PDPFGLLGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS ENLHKTFGS
Sbjct: 480 QGMKSMQATQAAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLHKTFGS 539

Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
           PWSDEPAKGDPEF+VPQCYYAKQPPALHQGYF KF VETLFYIFYSMPKDEAQLYAANEL
Sbjct: 540 PWSDEPAKGDPEFSVPQCYYAKQPPALHQGYFLKFQVETLFYIFYSMPKDEAQLYAANEL 599

Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
           YNRGWF+H+EHRLWFIRV N+EPLVKTN YERGSY CFDPNT+E++RKDNFV+HYE+LEK
Sbjct: 600 YNRGWFFHREHRLWFIRVANMEPLVKTNTYERGSYLCFDPNTWESVRKDNFVLHYELLEK 659

Query: 730 RPALPQH 736
           +P LPQH
Sbjct: 660 KPPLPQH 666

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558361|ref|XP_003547475.1| PREDICTED: probable NOT transcription complex subunit VIP2-like [Glycine max]

 Score =  979 bits (2532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/607 (84%), Positives = 555/607 (91%), Gaps = 13/607 (2%)

Query: 136 TLASRNSTINNVPTGG-VQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           TL SRNSTIN+VPTGG VQQP+ SLSSGRFASNNLPVALSQLSHGSSHGHSGV +RGGIS
Sbjct: 63  TLTSRNSTINSVPTGGGVQQPSASLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRGGIS 122

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
           VVGNPGF+S+TNGV G IPGILPTSAAIGNRN   G+GVSPILGNAGPRITSSMGNMVGG
Sbjct: 123 VVGNPGFNSSTNGVAGPIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVGG 182

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGR   S GGLSVP GLASRLN++ N+GSG L VQGQNRLMSGVLPQGSPQVISMLGN
Sbjct: 183 GNIGRI--SSGGLSVP-GLASRLNVSGNTGSGGLGVQGQNRLMSGVLPQGSPQVISMLGN 239

Query: 315 SYPTAGGPLSQSHV---NNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYP+AGGPLSQSHV   NNL+SMGMLNDVNS DS+PFDIN DFPQLTSRPSSAGGPQGQL
Sbjct: 240 SYPSAGGPLSQSHVQTVNNLNSMGMLNDVNSGDSTPFDIN-DFPQLTSRPSSAGGPQGQL 298

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
           GSLRKQGL   PIVQQNQEFSIQNEDFPALPG+KGGN+++ MD++QKEQLH+NT+SMMQS
Sbjct: 299 GSLRKQGL---PIVQQNQEFSIQNEDFPALPGFKGGNSDFAMDMYQKEQLHDNTVSMMQS 355

Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
           QHFSMGRSAGF+LGG+Y SHR QQQQQHAPSVSS+GVSFSSVNNQDLLHLHG+D+FPSSH
Sbjct: 356 QHFSMGRSAGFSLGGSYPSHRTQQQQQHAPSVSSNGVSFSSVNNQDLLHLHGTDIFPSSH 415

Query: 492 SSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRN 549
           S+YHSQTSGPPGIGLRPL S N VSGMGSYDQL+Q   Q+ +Q  FRLQQMSA NQSFR+
Sbjct: 416 STYHSQTSGPPGIGLRPLTSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQQMSAANQSFRD 475

Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
           Q MKS+Q A S+PDPFG LGL SV+ +SDP+L  LA GIDLTTLGLNLNS+ENL+KTF S
Sbjct: 476 QGMKSMQTAQSSPDPFGALGLFSVVHISDPNLKYLAHGIDLTTLGLNLNSSENLYKTFRS 535

Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
           PWSDEPAKGDPEF+V QCYY KQPPALHQGYFSKF+VETLFYIFYSMPKDEAQLYAANEL
Sbjct: 536 PWSDEPAKGDPEFSVLQCYYVKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANEL 595

Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
           Y RGWFYHKEHRLWFIRVPN+EPLVKTN YERGSYHCFDPNTFET+RKDNFV+HYEM+EK
Sbjct: 596 YKRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYEMVEK 655

Query: 730 RPALPQH 736
           RP++PQH
Sbjct: 656 RPSVPQH 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460985|ref|XP_004148224.1| PREDICTED: probable NOT transcription complex subunit VIP2-like [Cucumis sativus] gi|449484919|ref|XP_004157017.1| PREDICTED: probable NOT transcription complex subunit VIP2-like [Cucumis sativus]

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/606 (81%), Positives = 542/606 (89%), Gaps = 10/606 (1%)

Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           G L SRNSTIN+VP+GGVQQPTG+LSSGRFASNNLPVALSQLSHGSSHGHSGV +RGG+S
Sbjct: 59  GALNSRNSTINSVPSGGVQQPTGTLSSGRFASNNLPVALSQLSHGSSHGHSGVTSRGGLS 118

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
           VVGNPGFSS+TN VGGSIPGIL TSAAIGNRN   G+GVSPILGNAGPRITSSMGNMV G
Sbjct: 119 VVGNPGFSSSTNAVGGSIPGILSTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVSG 178

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGRS+ +GGGLS+P GLASRLNL ANSGSGSL VQGQNRLMSGVLPQGS QV+SMLGN
Sbjct: 179 GNIGRSVTAGGGLSLP-GLASRLNLNANSGSGSLTVQGQNRLMSGVLPQGSQQVLSMLGN 237

Query: 315 SYPTAGGPLSQSH---VNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYPTAGGPLSQ+H   VN+L+S+GMLNDVN+ND+SPFDIN DFPQLTSRPSSAGGPQGQL
Sbjct: 238 SYPTAGGPLSQNHMQSVNSLNSLGMLNDVNANDNSPFDIN-DFPQLTSRPSSAGGPQGQL 296

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
            SLRKQGL  SPIVQQNQEFSIQNEDFPALP +KGGNA+YGMD+HQK+Q HEN++ MMQS
Sbjct: 297 SSLRKQGL--SPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDIHQKDQ-HENSVPMMQS 353

Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
           Q FS+GRSAGFNLGGTY SHRPQQQQQH+ +VS+S VSF   NNQDLLHLHGSD+FPSSH
Sbjct: 354 QQFSIGRSAGFNLGGTY-SHRPQQQQQHSSAVSNSTVSFPPANNQDLLHLHGSDIFPSSH 412

Query: 492 S-SYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQ 550
           + SYH Q+SGPPGIGLRPL+S N  SGMG        QH   SQFRLQ MS V+QSFR+Q
Sbjct: 413 AASYHQQSSGPPGIGLRPLSSPNSASGMGYDQLQQHQQHHGQSQFRLQHMSGVSQSFRDQ 472

Query: 551 DMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSP 610
            MKS+QAA S+PDPFGLLGLLSVI++SDPDL SLALGIDLTTLGLNLNS +NLHKTFGSP
Sbjct: 473 GMKSLQAAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSADNLHKTFGSP 532

Query: 611 WSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELY 670
           WSDEPAKGDP+F VPQCY  K P +LHQGYFSKFT+ETLFYIF+SMPKDEAQLYAANELY
Sbjct: 533 WSDEPAKGDPDFNVPQCYVIKPPASLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELY 592

Query: 671 NRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
           NRGWFYHKEHR WFIRV N+EPLVKT+ YERGSY CFDP+TFET+RKDNFV+HYEM+EKR
Sbjct: 593 NRGWFYHKEHRFWFIRVSNMEPLVKTSTYERGSYLCFDPHTFETVRKDNFVLHYEMVEKR 652

Query: 731 PALPQH 736
           P L QH
Sbjct: 653 PVLSQH 658

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454057|ref|XP_003597309.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|355486357|gb|AES67560.1| CCR4-NOT transcription complex subunit [Medicago truncatula]

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/658 (76%), Positives = 554/658 (84%), Gaps = 66/658 (10%)

Query: 136 TLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGISV 195
           TL SRNSTIN++PTG VQQPT SLSSGRF SNNLP ALSQLSHGSSHGHSGV +RGGISV
Sbjct: 62  TLTSRNSTINSMPTGAVQQPTSSLSSGRFTSNNLPSALSQLSHGSSHGHSGVNSRGGISV 121

Query: 196 VGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGGG 255
           VGNPGFS+NTNGV GSIPGILP+SAAIGNRN   G+GVSPILGNAGPRITSSMGNMVGGG
Sbjct: 122 VGNPGFSNNTNGVAGSIPGILPSSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVGGG 181

Query: 256 NIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNS 315
           NIGR   S GGLS+P GLASRLNL  NSGSG L VQGQNR+MSGVLPQGSPQVISMLGNS
Sbjct: 182 NIGRI--SSGGLSIP-GLASRLNLNGNSGSGGLGVQGQNRMMSGVLPQGSPQVISMLGNS 238

Query: 316 YPTAGGPLSQSH---VNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLG 372
           YP+AGGPLSQSH   V++L+SMGMLND+NS+DSSPFD+N DFPQLTSRPSSAGGPQGQLG
Sbjct: 239 YPSAGGPLSQSHMQAVHHLNSMGMLNDLNSSDSSPFDLN-DFPQLTSRPSSAGGPQGQLG 297

Query: 373 SLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQ 432
           SLRKQGL  SPIVQQNQEFSIQNEDFPALPGYKGGN E+ MD+HQKEQL++NTMSMMQSQ
Sbjct: 298 SLRKQGL--SPIVQQNQEFSIQNEDFPALPGYKGGNGEFTMDMHQKEQLNDNTMSMMQSQ 355

Query: 433 HFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHS 492
           HFSMGRSAGF+LGG+Y+SHR   QQQH+PSVS+SGVSFSS+NNQDL H+HGSD+FPSS+S
Sbjct: 356 HFSMGRSAGFSLGGSYSSHR--SQQQHSPSVSNSGVSFSSMNNQDL-HMHGSDVFPSSNS 412

Query: 493 SYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRNQ 550
           +YHSQT+GPPGIGLRPLNS N VSG G YDQL+Q   Q+ +Q  FRLQQMSAVNQSFR+ 
Sbjct: 413 TYHSQTNGPPGIGLRPLNSPNTVSGTGPYDQLIQQYQQHQNQSQFRLQQMSAVNQSFRDH 472

Query: 551 DMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSP 610
            MKS+Q A S PDPFGLLGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS+ENLHKTFGSP
Sbjct: 473 GMKSMQTAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSP 532

Query: 611 WSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL- 669
           WS+EPAKGDPEF+V QCYYAK PPALHQGYF+KFT+ETLFYIFYSMPKDEAQLYAANEL 
Sbjct: 533 WSEEPAKGDPEFSVLQCYYAKPPPALHQGYFAKFTLETLFYIFYSMPKDEAQLYAANELY 592

Query: 670 ---------------------------------------------------YNRGWFYHK 678
                                                              Y RGWFYHK
Sbjct: 593 AFDHIYPFVLLFLLFGLVSVLFLDNYVHGFLEKVFNLKISNYQQTMVVSLSYKRGWFYHK 652

Query: 679 EHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQH 736
           EHR+W+I+VPN+EPLVKT+ YERGSYHCFDP+TFET+R+DNFV  YEM+EKRP+LPQH
Sbjct: 653 EHRMWYIKVPNMEPLVKTSTYERGSYHCFDPSTFETVRRDNFVFQYEMVEKRPSLPQH 710

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746154|emb|CBI16210.3| unnamed protein product [Vitis vinifera]

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/607 (81%), Positives = 535/607 (88%), Gaps = 45/607 (7%)

Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           GTLASRNSTIN+VP+GGVQQPTG+LSSGR+ASN+LPVALSQ+SHGSSHGHSGVANRGG  
Sbjct: 62  GTLASRNSTINSVPSGGVQQPTGNLSSGRYASNSLPVALSQISHGSSHGHSGVANRGG-- 119

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
                                               +GVSPILGNAGPRITSSMGN+VGG
Sbjct: 120 ------------------------------------LGVSPILGNAGPRITSSMGNIVGG 143

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGRS+ SGGGLSVP G+ASRLNL ANSGSGSLNVQG NRLMSGVL Q SPQVISMLGN
Sbjct: 144 GNIGRSISSGGGLSVP-GIASRLNLAANSGSGSLNVQGPNRLMSGVLQQASPQVISMLGN 202

Query: 315 SYPTAGGPLSQSHV---NNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYP+AGGPLSQ HV   NNLSSMGMLNDVNSN++SPFDIN DFPQLTSRPSS+GGPQGQL
Sbjct: 203 SYPSAGGPLSQGHVQTVNNLSSMGMLNDVNSNENSPFDIN-DFPQLTSRPSSSGGPQGQL 261

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
           GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MDLHQKEQ H+NT+SMMQS
Sbjct: 262 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQFHDNTVSMMQS 321

Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
           QHFSMGRSAGFNLGG+Y+SHRPQQQQQHAP+VSS GVSFS VNNQDLLHLHGSD+FPSSH
Sbjct: 322 QHFSMGRSAGFNLGGSYSSHRPQQQQQHAPAVSSGGVSFSPVNNQDLLHLHGSDIFPSSH 381

Query: 492 SSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRN 549
           S+YHSQTSGPPGIGLRPLNS N VSGMGSYDQL+Q   Q+ +Q  FRLQQMSAV+Q+FR+
Sbjct: 382 STYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQQMSAVSQAFRD 441

Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
           Q MKS+QA  + PDPFGLLGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS ENLHKTFGS
Sbjct: 442 QGMKSMQATQAAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLHKTFGS 501

Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
           PWSDEPAKGDPEF+VPQCYYAKQPPALHQGYF KF VETLFYIFYSMPKDEAQLYAANEL
Sbjct: 502 PWSDEPAKGDPEFSVPQCYYAKQPPALHQGYFLKFQVETLFYIFYSMPKDEAQLYAANEL 561

Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
           YNRGWF+H+EHRLWFIRV N+EPLVKTN YERGSY CFDPNT+E++RKDNFV+HYE+LEK
Sbjct: 562 YNRGWFFHREHRLWFIRVANMEPLVKTNTYERGSYLCFDPNTWESVRKDNFVLHYELLEK 621

Query: 730 RPALPQH 736
           +P LPQH
Sbjct: 622 KPPLPQH 628

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550237|ref|XP_003543494.1| PREDICTED: probable NOT transcription complex subunit VIP2-like [Glycine max]

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/608 (78%), Positives = 521/608 (85%), Gaps = 49/608 (8%)

Query: 136 TLASRNSTINNVPTGG-VQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
           TL SRNSTIN+V TGG VQQP+ SLSSGRFASNNLPVALSQLSHG SHGHSGV NRGG+ 
Sbjct: 63  TLTSRNSTINSVRTGGGVQQPSASLSSGRFASNNLPVALSQLSHGGSHGHSGVNNRGGL- 121

Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
                                                GVSPILGNAGPRITSSMGNMVGG
Sbjct: 122 -------------------------------------GVSPILGNAGPRITSSMGNMVGG 144

Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
           GNIGR   S GGLSVP GLASRLNL+ N+GSG L VQGQNRLMSGVLPQGSPQVISMLGN
Sbjct: 145 GNIGRI--SPGGLSVP-GLASRLNLSGNAGSGGLGVQGQNRLMSGVLPQGSPQVISMLGN 201

Query: 315 SYPTAGGPLSQSHV---NNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
           SYP+AGG LSQSHV   NNL+SMGMLNDVNS DS+PFDIN DFPQLT+RPSSAGGPQGQL
Sbjct: 202 SYPSAGGSLSQSHVQTVNNLNSMGMLNDVNSGDSTPFDIN-DFPQLTNRPSSAGGPQGQL 260

Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
           GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPG+KGGN+++ MD++QKEQLH+NTMSMMQS
Sbjct: 261 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNSDFAMDMYQKEQLHDNTMSMMQS 320

Query: 432 QHFS-MGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSS 490
           QHFS MGR+AGF+LGG Y SHR QQQQQHAPSVSS+GVSFSSVNNQDLLHLHG+D+FPSS
Sbjct: 321 QHFSQMGRTAGFSLGGLYPSHRTQQQQQHAPSVSSNGVSFSSVNNQDLLHLHGTDIFPSS 380

Query: 491 HSSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFR 548
           HS+YHSQTSGPPGIGLRPLNS N VSGMGSYDQL+Q   Q+ +Q  FRLQQMS+ NQSFR
Sbjct: 381 HSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQQMSSANQSFR 440

Query: 549 NQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFG 608
           +Q MKS+Q A S PDPFG LGL SV+ +SDP+L  LA GIDLTTLGLNLNSTENL+KTF 
Sbjct: 441 DQGMKSMQTAQSNPDPFGALGLFSVVHISDPNLKYLAHGIDLTTLGLNLNSTENLYKTFR 500

Query: 609 SPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANE 668
           SPWSDEPAKGDPEF+V QCYYAKQ P+LHQGYFSKF+VETLFYIFYSMPKDEAQLYAANE
Sbjct: 501 SPWSDEPAKGDPEFSVLQCYYAKQSPSLHQGYFSKFSVETLFYIFYSMPKDEAQLYAANE 560

Query: 669 LYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLE 728
           LY RGWFYHKEHRLWFIRVPN+EPLVKTN YERGSYHCFDPNTFET+RKDNFV+HYE++E
Sbjct: 561 LYKRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYEVVE 620

Query: 729 KRPALPQH 736
           KRP++PQH
Sbjct: 621 KRPSVPQH 628

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	736
UNIPROTKB|Q52JK6	603	VIP2 "Probable NOT transcripti	0.809	0.988	0.729	2.7e-235
TAIR|locus:505006107	614	NOT2a "Negative on TATA less2a	0.669	0.802	0.694	1.2e-186
TAIR|locus:2174259	614	VIP2 "VIRE2 interacting protei	0.430	0.516	0.704	2.2e-114
DICTYBASE|DDB_G0284577	579	DDB_G0284577 "putative CCR4-NO	0.252	0.321	0.463	8.7e-51
UNIPROTKB|Q5ZKI3	520	CNOT2 "Uncharacterized protein	0.232	0.328	0.457	1.2e-46
UNIPROTKB|F1M3V0	493	Cnot2 "Protein Cnot2" [Rattus	0.232	0.346	0.457	1.5e-46
UNIPROTKB|F1MID5	403	CNOT2 "Uncharacterized protein	0.232	0.424	0.457	5.7e-45
ZFIN|ZDB-GENE-070410-70	520	zgc:162316 "zgc:162316" [Danio	0.232	0.328	0.451	5.8e-45
UNIPROTKB|F8VV52	531	CNOT2 "CCR4-NOT transcription	0.232	0.322	0.457	1.2e-44
UNIPROTKB|F1LY92	531	Cnot2 "Protein Cnot2" [Rattus	0.232	0.322	0.457	1.2e-44

UNIPROTKB|Q52JK6 VIP2 "Probable NOT transcription complex subunit VIP2" [Nicotiana benthamiana (taxid:4100)]

 Score = 2269 (803.8 bits), Expect = 2.7e-235, P = 2.7e-235
 Identities = 443/607 (72%), Positives = 487/607 (80%)

Query:   135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLXXXXXXXXXXVANRGGIS 194
             GTL SRN+ INNVP+ GVQQ   +LS GRF  NNLP ALSQ+          + +RGG S
Sbjct:     3 GTLTSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPSALSQIPQGNSHGHSGMTSRGGTS 62

Query:   195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVXX 254
             VVGNPG+SSNTNGVGGSIPGILPT AAIGNR+   G+GVSPILGNAGPR+T+S+GN+V  
Sbjct:    63 VVGNPGYSSNTNGVGGSIPGILPTFAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNIVGG 122

Query:   255 XXXXXXXXXXXXXXXXXXXXXRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
                                  RLN+ ANSGSG+LNVQG NRLMSGVL Q SPQV+SMLGN
Sbjct:   123 GNIGRSISSGAGLSVPGLAS-RLNMNANSGSGNLNVQGPNRLMSGVLQQASPQVLSMLGN 181

Query:   315 SYPTAGGPLSQSHVN---NLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
             SYP AGGPLSQ+HV    N +SMG+LNDVNSND SPFDIN DFPQL+SRPSSAGGPQGQL
Sbjct:   182 SYP-AGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDIN-DFPQLSSRPSSAGGPQGQL 239

Query:   372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
             GSLRKQGL  SPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MD HQKEQLH+NT+SMMQ 
Sbjct:   240 GSLRKQGL--SPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQ 297

Query:   432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPXXXXXXXXXXXXNNQDLLHLHGXXXXXXXX 491
             QHFSMGRSAGFNLGGTY+S+RPQQQ QHAP            NNQDLL LHG        
Sbjct:   298 QHFSMGRSAGFNLGGTYSSNRPQQQLQHAPSVSSGGVSFSNINNQDLLSLHGSDVFQSSH 357

Query:   492 XXXXXXXXGPPGIGLRPLNSQNPVSGMGSYDQLVQ-YQ-HQNPSQFRLQQMSAVNQSFRN 549
                     GPPGIGLRPLNS   VSG+GSYDQL+Q YQ HQ  SQFRLQQMS + Q FR+
Sbjct:   358 SSYQQQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFRD 417

Query:   550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
             Q +KS+Q+    PDPFG+LGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS ENL+KTFGS
Sbjct:   418 QSLKSMQS-QVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGS 476

Query:   610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
             PWSDEPAKGDPEFTVPQCYYAKQPP L+Q YFSKF ++TLFYIFYSMPKDEAQLYAANEL
Sbjct:   477 PWSDEPAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANEL 536

Query:   670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
             YNRGWFYH+EHRLWF+RV N+EPLVKTNAYERGSY CFDPNT+ETI KDNFV+H EMLEK
Sbjct:   537 YNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEK 596

Query:   730 RPALPQH 736
             RP LPQH
Sbjct:   597 RPVLPQH 603

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0015074 "DNA integration" evidence=IMP

TAIR|locus:505006107 NOT2a "Negative on TATA less2a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1810 (642.2 bits), Expect = 1.2e-186, P = 1.2e-186
 Identities = 360/518 (69%), Positives = 403/518 (77%)

Query:   223 GNRNLGQGMGVSPILGNAGPRITSSMGNMVXXXXXXXXXXXXXXXXXXXXXXXRLNLTAN 282
             G  N G G+GVSPILGN G R+TSSMGNMV                       RLNL  N
Sbjct:   113 GLTNRG-GLGVSPILGNVGSRMTSSMGNMVGGGTMGRTLSSGGGLSIPSLGS-RLNLAVN 170

Query:   283 SGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHV---NNLSSMGMLND 339
             SGSG++   GQNR+M GVLPQGSPQV+SMLGNSYP+AGG LSQ+HV   N+LSSMG+LND
Sbjct:   171 SGSGNI---GQNRMMGGVLPQGSPQVLSMLGNSYPSAGG-LSQNHVQAMNSLSSMGLLND 226

Query:   340 VNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFP 399
             +NSND+SPFDINNDFPQLTSRPSSAG  QGQLGS  KQGLG+SPIVQQNQEFSIQNEDFP
Sbjct:   227 MNSNDTSPFDINNDFPQLTSRPSSAGS-QGQLGSRLKQGLGISPIVQQNQEFSIQNEDFP 285

Query:   400 ALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRPQQQQQH 459
             ALPGYKG +A+Y MDLH KEQLHEN++ MMQSQ  SMGRS GFNLGG YTSHRPQQQQQH
Sbjct:   286 ALPGYKGSSADYPMDLHHKEQLHENSVLMMQSQQLSMGRSGGFNLGGAYTSHRPQQQQQH 345

Query:   460 APXXXXXXXXXXXXNNQDLLHLHGXXXXXXXXXXXXXXXXGPPGIGLRPLNSQNPVSGMG 519
             A                  + LHG                G PGIGLR +NS N ++GMG
Sbjct:   346 AQAVSSSG-----------VSLHGSDIFSSSHPPYHSQTGGAPGIGLRSMNSANSITGMG 394

Query:   520 SYDQLVQ-YQHQ-NPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMS 577
                QL+Q YQHQ N +Q+RLQQMSA +Q FR+  +KS+Q+  S PD FGLLGLLSVIKMS
Sbjct:   395 YDQQLIQQYQHQQNSAQYRLQQMSAASQPFRDVGLKSMQSTQSNPDRFGLLGLLSVIKMS 454

Query:   578 DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALH 637
             DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWS+EP+K DPEF+VPQCYYAK PP LH
Sbjct:   455 DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSKVDPEFSVPQCYYAKNPPPLH 514

Query:   638 QGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTN 697
             QG F+K  VETLFY+FYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIR+   EPLVKTN
Sbjct:   515 QGLFAKLLVETLFYVFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRIG--EPLVKTN 572

Query:   698 AYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQ 735
             AYERGSYHCFDPN+FE ++K+NFV++YEMLEKRP++ Q
Sbjct:   573 AYERGSYHCFDPNSFEIVQKENFVLYYEMLEKRPSISQ 610

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2174259 VIP2 "VIRE2 interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 229/325 (70%), Positives = 256/325 (78%)

Query:   135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLXXXXXXXXXXVANRGGIS 194
             GTL SRNS++N++P+ GVQQP GS SSGRFASNNLPV LSQL          + NRG ++
Sbjct:    61 GTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRG-LN 119

Query:   195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVXX 254
             VVGNPGFSSN NGVGGSIPGIL TSA + NRN   GMG+S +LGN+GPRIT+SMGNMV  
Sbjct:   120 VVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGG 179

Query:   255 XXXXXXXXXXXXXXXXXXXXXRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
                                  RLNL ANSGSG LNVQGQNR+M GVLPQGS QV+SMLGN
Sbjct:   180 GNLGRNISSGGLSIPGLSS--RLNLAANSGSG-LNVQGQNRMMGGVLPQGS-QVMSMLGN 235

Query:   315 SYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSL 374
             SY T GGPLSQ+HV ++++M ML+D + NDSS FDINNDFPQLTSRP SAGG QG LGSL
Sbjct:   236 SYHTGGGPLSQNHVQSVNNM-MLSD-HPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSL 293

Query:   375 RKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHF 434
             RKQGLGV P+VQQNQEFSIQNEDFPALPGYKGGN+EY MDLHQKEQLH+N MSMM SQ+F
Sbjct:   294 RKQGLGV-PLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNF 352

Query:   435 SMGRSAGFNLGGTYTSHRPQQQQQH 459
             SMGRS GFNLG TY+SHRPQQQ QH
Sbjct:   353 SMGRSGGFNLGATYSSHRPQQQPQH 377

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0015074 "DNA integration" evidence=IMP

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

DICTYBASE|DDB_G0284577 DDB_G0284577 "putative CCR4-NOT complex subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 438 (159.2 bits), Expect = 8.7e-51, Sum P(3) = 8.7e-51
 Identities = 89/192 (46%), Positives = 117/192 (60%)

Query:   544 NQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENL 603
             +Q       K           +GLLGLLSVIK +D D+++L++GIDLT LGLNLNS   +
Sbjct:   346 DQGHEEYQRKDFNIVDKDNGKYGLLGLLSVIKNTDLDISTLSIGIDLTALGLNLNSQGEI 405

Query:   604 HKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSK--FTVETLFYIFYSMPKDEA 661
               +FGSPW D      PE+ +P CY     P L    F    FT ETLFYIFYSMPKD  
Sbjct:   406 SNSFGSPWVDYSISRKPEYYIPLCY---STPNLESPTFKMNLFTYETLFYIFYSMPKDVL 462

Query:   662 QLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFV 721
             QL+AA ELY+R W YHKE ++W  RV   EP + T+ +E GS+  FD   +ET+R+DNF 
Sbjct:   463 QLHAAIELYDRDWRYHKEGKIWLTRVQGTEPNI-TSTFEVGSFFFFDVTIWETVRRDNFY 521

Query:   722 VHYEMLEKRPAL 733
             + +++LE +  L
Sbjct:   522 IPHDLLETKEVL 533

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS

GO:0030015 "CCR4-NOT core complex" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

UNIPROTKB|Q5ZKI3 CNOT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 385 (140.6 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
 Identities = 81/177 (45%), Positives = 108/177 (61%)

Query:   563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
             D FG++GLL+ I+ +  DP +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D
Sbjct:   333 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 392

Query:   620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
              +F VP  Y         L      ++  + LFY++Y    D  QL AA EL+NR W YH
Sbjct:   393 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 452

Query:   678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
             KE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:   453 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 508

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1M3V0 Cnot2 "Protein Cnot2" [Rattus norvegicus (taxid:10116)]

 Score = 385 (140.6 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
 Identities = 81/177 (45%), Positives = 108/177 (61%)

Query:   563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
             D FG++GLL+ I+ +  DP +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D
Sbjct:   306 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 365

Query:   620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
              +F VP  Y         L      ++  + LFY++Y    D  QL AA EL+NR W YH
Sbjct:   366 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 425

Query:   678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
             KE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:   426 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 481

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MID5 CNOT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 385 (140.6 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
 Identities = 81/177 (45%), Positives = 108/177 (61%)

Query:   563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
             D FG++GLL+ I+ +  DP +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D
Sbjct:   216 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 275

Query:   620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
              +F VP  Y         L      ++  + LFY++Y    D  QL AA EL+NR W YH
Sbjct:   276 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 335

Query:   678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
             KE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:   336 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 391

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-070410-70 zgc:162316 "zgc:162316" [Danio rerio (taxid:7955)]

 Score = 384 (140.2 bits), Expect = 5.8e-45, Sum P(2) = 5.8e-45
 Identities = 80/177 (45%), Positives = 109/177 (61%)

Query:   563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
             D FG++GLL+ I+ +  DP +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D
Sbjct:   333 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQD 392

Query:   620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
              +F VP  Y         L      ++  + LFY++Y    D  QL AA EL+NR W YH
Sbjct:   393 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYH 452

Query:   678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
             KE R+W  R P +EP +KTN YERG+Y+ FD + +  + K+ F + Y+ LE+RP +P
Sbjct:   453 KEERVWITRAPGMEPTLKTNTYERGTYYFFDCHNWRKVAKE-FHLEYDKLEERPHVP 508

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F8VV52 CNOT2 "CCR4-NOT transcription complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 385 (140.6 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
 Identities = 81/177 (45%), Positives = 108/177 (61%)

Query:   563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
             D FG++GLL+ I+ +  DP +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D
Sbjct:   344 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 403

Query:   620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
              +F VP  Y         L      ++  + LFY++Y    D  QL AA EL+NR W YH
Sbjct:   404 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 463

Query:   678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
             KE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:   464 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 519

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1LY92 Cnot2 "Protein Cnot2" [Rattus norvegicus (taxid:10116)]

 Score = 385 (140.6 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
 Identities = 81/177 (45%), Positives = 108/177 (61%)

Query:   563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
             D FG++GLL+ I+ +  DP +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D
Sbjct:   344 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 403

Query:   620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
              +F VP  Y         L      ++  + LFY++Y    D  QL AA EL+NR W YH
Sbjct:   404 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 463

Query:   678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
             KE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:   464 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 519

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q52JK6	VIP2_NICBE	No assigned EC number	0.7973	0.8097	0.9883	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	736
pfam04153	131	pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family	9e-55
COG5601	172	COG5601, CDC36, General negative regulator of tran	4e-32
COG5665	548	COG5665, NOT5, CCR4-NOT transcriptional regulation	2e-16
COG5651	490	COG5651, COG5651, PPE-repeat proteins [Cell motili	0.001

>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family

 Score =  183 bits (467), Expect = 9e-55
 Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 9/133 (6%)

Query: 603 LHKTFGSPWSDEPA-KGDPEFTVPQCY------YAKQPPALHQGYFSKFTVETLFYIFYS 655
           LH +F SP S   A +  P++ +P+CY      Y + PP L    F KF  ETLFYIFY 
Sbjct: 1   LHPSFASPPSPSDARERPPQYDIPECYLNTPSSYPQNPPPLSPSKFQKFDDETLFYIFYY 60

Query: 656 MPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETI 715
           MP D  Q  AA EL NRGW YHK+++ WF R  + EP V T+ YERGSY  FDP +++  
Sbjct: 61  MPGDLQQYLAAKELKNRGWRYHKKYQTWFTR--HEEPKVITDEYERGSYIYFDPESWKKR 118

Query: 716 RKDNFVVHYEMLE 728
           RK+NF + Y  LE
Sbjct: 119 RKENFTLDYSDLE 131

NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Length = 131

>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription]

 Score =  122 bits (307), Expect = 4e-32
 Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 566 GLLGLLSVIKMSDPDLTSLALGIDLTTLGLNL----NSTENLHKTFGSPWSDEPAKG-DP 620
            L  L  + ++ D + +   LG DL +  L+L       +    T  SPW++   K   P
Sbjct: 1   MLNILKPLEQIEDEEQSIHDLGKDLLSEILSLVRPKKYQDRPSTTLYSPWAESTKKPVQP 60

Query: 621 EFTVPQCY-YAKQPPAL----HQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWF 675
            F +P CY  A  PP             F  ETLFYIFYS P D  Q  A +EL  R W 
Sbjct: 61  MFMLPNCYPNAPNPPIFKVNIEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWR 120

Query: 676 YHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLE 728
           +HK  + W    P + P    +  ERGSY  FDP ++  +  D F++ Y+ + 
Sbjct: 121 FHKMLKCWLTFNPGMSPATADHVKERGSYVFFDPFSWSKVSLD-FLLDYKAVR 172

Length = 172

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

 Score = 82.8 bits (204), Expect = 2e-16
 Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 18/137 (13%)

Query: 596 NLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALH--QGYFSKFTVETLFYIF 653
           N N T+  +K    P     A                P +       F KF ++TLF+IF
Sbjct: 424 NENDTDKKYK----PGKPSKAPS---------KKPDDPLSRFSSARIFMKFDLDTLFFIF 470

Query: 654 YSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFD-PNTF 712
           Y       Q  AA EL  R W +HK++R WF R   +EP   T   E GS+  FD   ++
Sbjct: 471 YHYQGTYQQYLAARELKKRSWRFHKKYRTWFQR--EIEPKPITGKSEEGSWRYFDYKKSW 528

Query: 713 ETIRKDNFVVHYEMLEK 729
              +K++FV +YE LEK
Sbjct: 529 LARKKNDFVFNYEYLEK 545

Length = 548

>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 45/251 (17%), Positives = 72/251 (28%), Gaps = 22/251 (8%)

Query: 125 VRLLLVSITMGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLS---HGSS 181
             L   ++  G L S N     + +       G+L            A +         +
Sbjct: 236 QNLGFGNVGFGNLGSGNPGAPGLASQFSATNLGTLLGSLNPYLGNIGATNIGLAAAGTGN 295

Query: 182 HGHSGVANRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAG 241
            G     + GG ++VG  G +S      GS+      +A  GN  +      +   G AG
Sbjct: 296 IGSGNAVDSGGSALVGAIGQTSQATANAGSVNATGGAAAGSGNLGVANSGSAAAPFGIAG 355

Query: 242 PRITSSMGNMVGGGNIGRSMGSGGGLSVPSGLAS-------------RLNLTANSGSGSL 288
               +  G   G GN G     GGGL       +                 +  + +G  
Sbjct: 356 ANQAALGGANSGAGNFGLGNNPGGGLGGKPLGGTGNGGIGASGIGNTGYGNSGIANAGLS 415

Query: 289 NVQGQNRLMSGVLP---QGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLN--DVNSN 343
           N    N            G   V          AG   +    N   + G LN  + N+ 
Sbjct: 416 NAGSNNAGGENAGNANNTGGGNVGLWN-AGDFNAGAAGTGFTNNGSYNTGFLNFGNDNTG 474

Query: 344 DSSPFDINNDF 354
             +  + +N  
Sbjct: 475 IFNGGNTSNGT 485

Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	736
PF04153	134	NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR	100.0
COG5601	172	CDC36 General negative regulator of transcription	100.0
COG5665	548	NOT5 CCR4-NOT transcriptional regulation complex,	99.93
KOG2150	575	consensus CCR4-NOT transcriptional regulation comp	99.93
KOG2151	312	consensus Predicted transcriptional regulator [Tra	99.88
KOG2151	312	consensus Predicted transcriptional regulator [Tra	99.66

>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes

Probab=100.00  E-value=4.3e-41  Score=310.54  Aligned_cols=124  Identities=51%  Similarity=0.941  Sum_probs=115.8

Q ss_pred             hhhhcCCCCCCCCC-CCCCccCCCCCCc------CCCCCCC---cchhhccCCcceEEEEeecCCCcHHHHHHHHHHhhc
Q 043458          603 LHKTFGSPWSDEPA-KGDPEFTVPQCYY------AKQPPAL---HQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNR  672 (736)
Q Consensus       603 Ly~TF~SPWsd~P~-r~DPEF~IPsCY~------~qqPPpL---q~~kfqKFseETLFYIFYsmPGD~lQllAA~ELynR  672 (736)
                      ||++|.+||++.++ ..+++|.+|.||.      ++.|+++   .+.+|++|++||||||||++|+|++|++||+||++|
T Consensus         1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k~~~eTLFyiFY~~p~~~~Q~~AA~eL~~R   80 (134)
T PF04153_consen    1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQKFSEETLFYIFYYMPGDYQQLLAAKELYKR   80 (134)
T ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhhcCCceEEEEEeecCCcHHHHHHHHHHHHC
Confidence            68999999999988 7899999999998      4556555   678999999999999999999999999999999999


Q ss_pred             CceeeccceeeeeccCCCCCcccCCcceeeEEEEEccccccccccCceeEechhhh
Q 043458          673 GWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLE  728 (736)
Q Consensus       673 GWRYHKe~rlWFtR~~n~ePkvkT~~yErGsYiyFDp~tW~kvrKENFvLdYe~LE  728 (736)
                      +|||||++++||+|++  ++.+.++.+|+|+|+|||+++|++++|+||+|+|++||
T Consensus        81 ~Wryhk~~~~W~~r~~--~~~~~~~~~e~g~y~~FD~~~W~~~~k~~f~~~y~~LE  134 (134)
T PF04153_consen   81 GWRYHKEYKTWFQRDS--EPKPITEQYERGSYVYFDPESWEKRRKKNFTFDYSDLE  134 (134)
T ss_pred             CcEEecCcCEEeeECC--CCCccccceeeeeEEEechHHhcCcchhccEEeHHHcC
Confidence            9999999999999988  66788899999999999999999999889999999998

This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]

Probab=100.00  E-value=2e-38  Score=299.65  Aligned_cols=162  Identities=33%  Similarity=0.586  Sum_probs=144.1

Q ss_pred             ccchhhhhhhcCCCCcccccccccccCCCCCC----CchhhhhhhcCCCCCCCCC-CCCCccCCCCCCcCCCCCCC----
Q 043458          566 GLLGLLSVIKMSDPDLTSLALGIDLTTLGLNL----NSTENLHKTFGSPWSDEPA-KGDPEFTVPQCYYAKQPPAL----  636 (736)
Q Consensus       566 GLlGLLsvIRmsDPDLtSLALG~DLTtLGLNL----NS~E~Ly~TF~SPWsd~P~-r~DPEF~IPsCY~~qqPPpL----  636 (736)
                      +|.-|+.+++++|.+++++.+|.||.++++++    .+.+.+..+|.|||++... +.+|.|.+|.||....+|++    
T Consensus         1 ml~~l~pl~~ied~e~s~~~lg~Dl~s~~~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp~f~lP~cy~n~p~pp~f~~~   80 (172)
T COG5601           1 MLNILKPLEQIEDEEQSIHDLGKDLLSEILSLVRPKKYQDRPSTTLYSPWAESTKKPVQPMFMLPNCYPNAPNPPIFKVN   80 (172)
T ss_pred             CchhhhhHHHHHHhhhhHHHhchhHHHHHHhhcCcccccccccccccChhhhhccCcccchhcCccccCCCCCCCceecc
Confidence            45678889999999999999999999988776    3345578889999999843 36899999999986555553    


Q ss_pred             -cchhhccCCcceEEEEeecCCCcHHHHHHHHHHhhcCceeeccceeeeeccCCCCCcccCCcceeeEEEEEcccccccc
Q 043458          637 -HQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETI  715 (736)
Q Consensus       637 -q~~kfqKFseETLFYIFYsmPGD~lQllAA~ELynRGWRYHKe~rlWFtR~~n~ePkvkT~~yErGsYiyFDp~tW~kv  715 (736)
                       ...++..|++||||||||++|+|++|+.|+.||.+|+|||||.+|+|+|.++.|+|.+.++..|||+|++|||..|+++
T Consensus        81 ~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvfFDP~~W~k~  160 (172)
T COG5601          81 IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVFFDPFSWSKV  160 (172)
T ss_pred             hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEEEcchhHHHH
Confidence             2457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCceeEechhhh
Q 043458          716 RKDNFVVHYEMLE  728 (736)
Q Consensus       716 rKENFvLdYe~LE  728 (736)
                      .++ |.|+|..++
T Consensus       161 ~~d-fll~y~av~  172 (172)
T COG5601         161 SLD-FLLDYKAVR  172 (172)
T ss_pred             hHH-HHHHHHhhC
Confidence            996 999998764

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=99.93  E-value=5.1e-27  Score=247.52  Aligned_cols=105  Identities=38%  Similarity=0.640  Sum_probs=95.5

Q ss_pred             CCCCCCcCCCCCCC--cchhhccCCcceEEEEeecCCCcHHHHHHHHHHhhcCceeeccceeeeeccCCCCCcccCCcce
Q 043458          623 TVPQCYYAKQPPAL--HQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYE  700 (736)
Q Consensus       623 ~IPsCY~~qqPPpL--q~~kfqKFseETLFYIFYsmPGD~lQllAA~ELynRGWRYHKe~rlWFtR~~n~ePkvkT~~yE  700 (736)
                      .+|. |++++|..+  ...+|.+|+.||||||||+.+|+++|++||+||++|.|||||+|++||+|..  ||+.+|+.+|
T Consensus       439 ~~Ps-~~P~~PL~~F~S~~if~k~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~SWRFHkKY~TWFQR~~--EPK~IT~~~E  515 (548)
T COG5665         439 KAPS-KKPDDPLSRFSSARIFMKFDLDTLFFIFYHYQGTYQQYLAARELKKRSWRFHKKYRTWFQREI--EPKPITGKSE  515 (548)
T ss_pred             CCCC-CCCCCccccccHHHHHHhcCccceEEEeeeccchHHHHHHHHHHHhhhhhhhcchhhhhhhhc--ccccccCccc
Confidence            3444 455666554  4678999999999999999999999999999999999999999999999998  9999999999


Q ss_pred             eeEEEEEcc-ccccccccCceeEechhhhcC
Q 043458          701 RGSYHCFDP-NTFETIRKDNFVVHYEMLEKR  730 (736)
Q Consensus       701 rGsYiyFDp-~tW~kvrKENFvLdYe~LE~r  730 (736)
                      +|+|.|||+ .+|..++|.+|+|.|++||+.
T Consensus       516 ~Gs~ryFDy~~~W~~rKK~DF~F~Y~YLE~~  546 (548)
T COG5665         516 EGSWRYFDYKKSWLARKKNDFVFNYEYLEKL  546 (548)
T ss_pred             cCceeEeeccchHHHhhcccceeehhhhhhc
Confidence            999999998 699999999999999999974

>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=99.93  E-value=1.7e-26  Score=252.36  Aligned_cols=122  Identities=32%  Similarity=0.604  Sum_probs=103.6

Q ss_pred             hcCCCCCCCCCC--------CCCc--cCCCCCCcCCCCCCC--cchhhccCCcceEEEEeecCCCcHHHHHHHHHHhhcC
Q 043458          606 TFGSPWSDEPAK--------GDPE--FTVPQCYYAKQPPAL--HQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRG  673 (736)
Q Consensus       606 TF~SPWsd~P~r--------~DPE--F~IPsCY~~qqPPpL--q~~kfqKFseETLFYIFYsmPGD~lQllAA~ELynRG  673 (736)
                      .+..+|.-.|..        .+|.  +..|. |+.+.++++  ...++.+|+.||||||||+++++++|++||+||++|.
T Consensus       441 ~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~-~~~q~~~~~~ds~~~~~rl~~dTLFfiFY~~qgt~eQylAaKeLkk~s  519 (575)
T KOG2150|consen  441 ALEAACKLVPIPSDSEKPQGYLPKTPLPTPS-YFPQTPPSLTDSTEITERLDPDTLFFIFYYQQGTYEQYLAAKELKKRS  519 (575)
T ss_pred             HHHhhhccCCCCchhhcccCCCCCCCCCCCc-cCCCCCCcccchhhHHhhccccceeeEEeeecchHHHHHHHHHHhhcc
Confidence            345555555443        3333  33443 445566655  4678999999999999999999999999999999999


Q ss_pred             ceeeccceeeeeccCCCCCcccCCcceeeEEEEEccccccccccCceeEechhhhcC
Q 043458          674 WFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR  730 (736)
Q Consensus       674 WRYHKe~rlWFtR~~n~ePkvkT~~yErGsYiyFDp~tW~kvrKENFvLdYe~LE~r  730 (736)
                      |||||++.+||+|+.  ||+..|+.||+|+|+|||+..|+.++|++|+|+|.+||+.
T Consensus       520 Wrfhkky~tWFqR~~--EpK~itd~~E~G~y~yFD~~~W~qrkK~dFtfeY~yLE~~  574 (575)
T KOG2150|consen  520 WRFHKKYTTWFQRHE--EPKNITDIYEQGDYRYFDYKDWSQRKKIDFTFEYQYLEDS  574 (575)
T ss_pred             eeEeecceeEeeecc--CccchhhhhhcCceEEEehhHhhhhhccceeeehhhccCC
Confidence            999999999999998  9999999999999999999999999999999999999975

>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.88  E-value=2.4e-23  Score=215.76  Aligned_cols=133  Identities=35%  Similarity=0.643  Sum_probs=124.2

Q ss_pred             hhcccccccCCCccccccCCCCCCCcccchhhhhhhcCCC-CcccccccccccCCCCCCCchhhhhhhcCCCCCCCCCCC
Q 043458          540 MSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDP-DLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG  618 (736)
Q Consensus       540 ~s~~~Qs~rD~slks~Q~~~s~~D~FGLlGLLsvIRmsDP-DLtSLALG~DLTtLGLNLNS~E~Ly~TF~SPWsd~P~r~  618 (736)
                      .....|+.+|..+..+.++| ..++|||+|||..||..+. ..+.+.+|.||+++|++++.+++++.+|.+||.+.|+..
T Consensus       179 qk~g~q~~Pdg~v~niP~~m-~t~~fgm~gLL~~ir~~~~~g~~~l~lg~Dl~~lllsla~~~di~~~F~~P~~~~P~~~  257 (312)
T KOG2151|consen  179 QKVGSQPTPDGYVPNIPSGM-ETGQFGMKGLLTLIRGAQGEGQTTLPLGADLNSLLLSLAVPEDIIPTFQGPWGEVPTSQ  257 (312)
T ss_pred             hhcccccCCCCcccCCCcch-hhhhhhhhcchhhheecccCcceeeccCCChhhhhccccccccccccccCCcccCCccc
Confidence            34566888999999999999 8899999999999999776 567899999999999999999999999999999999999


Q ss_pred             CCccCCCCCCcCCCCCCCcchhhccCCcceEEEEeecCCCcHHHHHHHHHHhhcCc
Q 043458          619 DPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGW  674 (736)
Q Consensus       619 DPEF~IPsCY~~qqPPpLq~~kfqKFseETLFYIFYsmPGD~lQllAA~ELynRGW  674 (736)
                      +++|.+|.||+. .+++++..++.+|++||||||||++++|.+|+.||.||.+|+|
T Consensus       258 ~~~~~lp~~y~~-v~~~~~~~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w  312 (312)
T KOG2151|consen  258 EASFNLPNCYLN-VNPKLQFSKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW  312 (312)
T ss_pred             chhhhcchhhhc-cCCccchHHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence            999999999986 6778888889999999999999999999999999999999999

>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.66  E-value=4.5e-17  Score=169.48  Aligned_cols=169  Identities=32%  Similarity=0.600  Sum_probs=141.8

Q ss_pred             CCCccccccCCCCCCCcccchhhhhhhc-CCCCcccccccccccCCCCCCCch-hhhhhhcCCCCCCCCCCCCCccCCCC
Q 043458          549 NQDMKSIQAAHSTPDPFGLLGLLSVIKM-SDPDLTSLALGIDLTTLGLNLNST-ENLHKTFGSPWSDEPAKGDPEFTVPQ  626 (736)
Q Consensus       549 D~slks~Q~~~s~~D~FGLlGLLsvIRm-sDPDLtSLALG~DLTtLGLNLNS~-E~Ly~TF~SPWsd~P~r~DPEF~IPs  626 (736)
                      |..+..+.+.+ ..|+||+  +..++++ .+|....+++|.||++||+++|.. .+++.+|+.||+++|.+......+|.
T Consensus         3 ~g~~~~ip~~~-~~~q~~~--~~p~~~~v~~p~~~~~~~~~d~~~lg~~~n~~~~~~~~~f~g~~~s~~l~~l~~~~~P~   79 (312)
T KOG2151|consen    3 DGENTNIPPQM-LSDQPGM--LVPYLSTVKNPSIVQLALGYDLTTLGLNLNLSERKLLMNFAGPWASEPLRHLLDTKVPE   79 (312)
T ss_pred             ccccCCCChhh-cccCCCC--CCCccccccCcchhhheeccchhccCcccccccccccccccCcCCCccccccccccCcc
Confidence            34556666555 7789998  6777766 568888899999999999988754 46788899999999999888889999


Q ss_pred             CCcCCCC--CCCcchhhccCCcceEEEEeecCCCcHHHHHHHHHHhhcCceeeccceeeeeccCCCCCcccCCcceeeEE
Q 043458          627 CYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSY  704 (736)
Q Consensus       627 CY~~qqP--PpLq~~kfqKFseETLFYIFYsmPGD~lQllAA~ELynRGWRYHKe~rlWFtR~~n~ePkvkT~~yErGsY  704 (736)
                      ||.+...  -.+.+..++|+...-|||+||++|        |.||..|.||||++.+.|+++-.-..+....+.+++|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~  151 (312)
T KOG2151|consen   80 EYMTHRHLRSKLPSLRLNKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHF  151 (312)
T ss_pred             ccccchhhhhcCCcccccccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchh
Confidence            9985322  223334489999999999999999        999999999999999999999876667777889999999


Q ss_pred             EEEccccccccccCceeEechhhhc
Q 043458          705 HCFDPNTFETIRKDNFVVHYEMLEK  729 (736)
Q Consensus       705 iyFDp~tW~kvrKENFvLdYe~LE~  729 (736)
                      ..||...|+++.|| -.++|.++|.
T Consensus       152 ~~~~q~s~~~~~ke-~~l~~~~~~~  175 (312)
T KOG2151|consen  152 NVFDQMSWRKIPKE-LKLAYSDLED  175 (312)
T ss_pred             ccccchhhhhcccc-hhhccccccc
Confidence            99999999999998 8888988887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	736
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 65/508 (12%), Positives = 133/508 (26%), Gaps = 165/508 (32%)

Query: 348 FDINN--DFPQ--LTSR--------PSSAGGPQGQLGSLRKQGLG-----VSPIVQQNQE 390
           FD  +  D P+  L+            +  G      +L  +        V  +++ N +
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 391 F---SIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGT 447
           F    I+ E        +  +    M + Q+++L+ +      +Q F+            
Sbjct: 93  FLMSPIKTE-------QRQPSMMTRMYIEQRDRLYND------NQVFA-----------K 128

Query: 448 YTSHRPQ---------QQQQHAPSVSSSG-----------------------------VS 469
           Y   R Q          + + A +V   G                             ++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 470 FSSVNNQDLLHLHGSDMFPSSHSSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQH 529
             + N+ + +      +      ++ S++     I    L   +  + +    +   Y++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKPYEN 245

Query: 530 --------QNPS---QFRLQ-------QMSAVNQSFRNQDMKSIQAAHSTPDPFG---LL 568
                   QN      F L        +   V           I   H          + 
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVK 304

Query: 569 GLLS-VIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPA--------KGD 619
            LL   +     DL    L  +   L +                 D  A          D
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSI-----------IAESIRDGLATWDNWKHVNCD 353

Query: 620 PEFTVPQCYYAKQPPALHQGYFSKFTV---------ETLFYIFYSMPKDEAQLYAANELY 670
              T+ +       PA ++  F + +V           L  I++ + K +  +   N+L+
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-NKLH 412

Query: 671 NRG----WFYHKEHRLWFIRVPNVEPLVKTNAYERGSYH-----------CFDPNTFETI 715
                      KE     I +P++   +K       + H            FD +     
Sbjct: 413 KYSLVEKQP--KEST---ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 716 RKDNFVVHY--------EMLEKRPALPQ 735
             D +   +        E  E+      
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00