Citrus Sinensis ID: 043501

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
LVKRHAAEIFMSVILSTLFSLYSTALAGRlvglepsltvsilPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDklrfrdpiargiatassahglgtaalsakepealpFCAIAYALTGIFGSLICSVPAVRQSLLAIAG
Flexible Loop (DISEMBL)
LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG
Low Complexity Region (SEG)
LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG
Disordered region (IsUnstruct)
*****AAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLA***
Disordered Region (DISOPRED)
LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG
Disordered Region (DISEMBL)
LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG
Disordered Region (DISPRO)
LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
P0AD20	231	Inner membrane protein Yo	yes	no	0.789	0.519	0.325	8e-09
P0AD19	231	Inner membrane protein Yo	N/A	no	0.789	0.519	0.325	8e-09
P39590	225	Uncharacterized protein Y	yes	no	0.717	0.484	0.327	8e-09
Q6GDQ8	229	Holin-like protein CidB O	yes	no	0.907	0.602	0.287	3e-08
P60640	229	Holin-like protein CidB O	yes	no	0.907	0.602	0.287	4e-08
Q6G6D4	229	Holin-like protein CidB O	yes	no	0.907	0.602	0.287	4e-08
P60638	229	Holin-like protein CidB O	yes	no	0.907	0.602	0.287	4e-08
P60637	229	Holin-like protein CidB O	yes	no	0.907	0.602	0.287	4e-08
Q5HD11	229	Holin-like protein CidB O	yes	no	0.907	0.602	0.287	4e-08
P60639	229	Holin-like protein CidB O	yes	no	0.907	0.602	0.287	4e-08

>sp|P0AD20|YOHK_SHIFL Inner membrane protein YohK OS=Shigella flexneri GN=yohK PE=3 SV=1

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 30  LVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLR 89
           L+G  P +  SILP+ +T  +A+++     G   +++A  V+  G++GA F    L+ +R
Sbjct: 112 LMGASPEIAASILPKSVTTPIAMAVGGSI-GGIPAISAVCVIFVGILGAVFGHTLLNAMR 170

Query: 90  FRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLA 149
            R   ARG+A  +++H LGTA  +  + +   F ++A  L GI  SLI   P +   +LA
Sbjct: 171 IRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLIA--PFLFPIILA 228

Query: 150 IAG 152
           + G
Sbjct: 229 VMG 231

Shigella flexneri (taxid: 623)

>sp|P0AD19|YOHK_ECOLI Inner membrane protein YohK OS=Escherichia coli (strain K12) GN=yohK PE=1 SV=1

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 30  LVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLR 89
           L+G  P +  SILP+ +T  +A+++     G   +++A  V+  G++GA F    L+ +R
Sbjct: 112 LMGASPEIAASILPKSVTTPIAMAVGGSI-GGIPAISAVCVIFVGILGAVFGHTLLNAMR 170

Query: 90  FRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLA 149
            R   ARG+A  +++H LGTA  +  + +   F ++A  L GI  SLI   P +   +LA
Sbjct: 171 IRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLIA--PFLFPIILA 228

Query: 150 IAG 152
           + G
Sbjct: 229 VMG 231

Escherichia coli (strain K12) (taxid: 83333)

>sp|P39590|YWBG_BACSU Uncharacterized protein YwbG OS=Bacillus subtilis (strain 168) GN=ywbG PE=3 SV=2

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           ++K++A EI ++V + +  ++ STAL  + + L   L  S++PR +T  +A++ VS   G
Sbjct: 82  VLKKYAVEIILNVAVGSCIAIISTALIAKWLHLGTGLIDSLVPRSVTTPIAMN-VSEMIG 140

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTA 110
              ++TA  V++T L+G       +   R  + IARG+   +SAHG GT+
Sbjct: 141 GMPAVTAVFVILTALLGTVIGPMVIRYFRIDNEIARGVLLGTSAHGAGTS 190

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q6GDQ8|CIDB_STAAR Holin-like protein CidB OS=Staphylococcus aureus (strain MRSA252) GN=cidB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 2   VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGA 61
           +K + + IF SV+   + +     L  +  G    + V++LPR IT A+ +  VS   G 
Sbjct: 86  IKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIE-VSHELGG 144

Query: 62  NSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALP 121
             ++T   ++ TGLIG+      L   RF   IA+G+   +++H  GTA     + E+  
Sbjct: 145 TDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGA 204

Query: 122 FCAIAYALTGIFGSLICSV 140
           F +I   LT +  S++  V
Sbjct: 205 FSSIGMILTAVISSVLIPV 223

Increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation. Inhibited by the antiholin-like proteins LrgAB. In an unstressed cell, the LrgAB products probably inhibit the function of the CidAB proteins. When a cell is stressed by the addition of antibiotics or by other factors in the environment, the CidAB proteins possibly oligomerize within the bacterial cell membrane, creating lesions that disrupt the proton motive force, which in turn results in loss of cell viability. These lesions are also hypothesized to regulate the subsequent cell lysis by either allowing the murein hydrolases access to the cell wall substrate and/or regulating their activity by a possible change in the cell wall pH that results from loss of membrane potential.

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

>sp|P60640|CIDB_STAAW Holin-like protein CidB OS=Staphylococcus aureus (strain MW2) GN=cidB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 2   VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGA 61
           +K + + IF SV+   + +     L  +  G    + V++LPR IT A+ +  VS   G 
Sbjct: 86  IKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIE-VSHELGG 144

Query: 62  NSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALP 121
             ++T   ++ TGLIG+      L   RF   IA+G+   +++H  GTA     + E+  
Sbjct: 145 TDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGA 204

Query: 122 FCAIAYALTGIFGSLICSV 140
           F +I   LT +  S++  V
Sbjct: 205 FSSIGMILTAVISSVLIPV 223

Increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation. Inhibited by the antiholin-like proteins LrgAB. In an unstressed cell, the LrgAB products probably inhibit the function of the CidAB proteins. When a cell is stressed by the addition of antibiotics or by other factors in the environment, the CidAB proteins possibly oligomerize within the bacterial cell membrane, creating lesions that disrupt the proton motive force, which in turn results in loss of cell viability. These lesions are also hypothesized to regulate the subsequent cell lysis by either allowing the murein hydrolases access to the cell wall substrate and/or regulating their activity by a possible change in the cell wall pH that results from loss of membrane potential.

Staphylococcus aureus (strain MW2) (taxid: 196620)

>sp|Q6G6D4|CIDB_STAAS Holin-like protein CidB OS=Staphylococcus aureus (strain MSSA476) GN=cidB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 2   VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGA 61
           +K + + IF SV+   + +     L  +  G    + V++LPR IT A+ +  VS   G 
Sbjct: 86  IKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIE-VSHELGG 144

Query: 62  NSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALP 121
             ++T   ++ TGLIG+      L   RF   IA+G+   +++H  GTA     + E+  
Sbjct: 145 TDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGA 204

Query: 122 FCAIAYALTGIFGSLICSV 140
           F +I   LT +  S++  V
Sbjct: 205 FSSIGMILTAVISSVLIPV 223

Increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation. Inhibited by the antiholin-like proteins LrgAB. In an unstressed cell, the LrgAB products probably inhibit the function of the CidAB proteins. When a cell is stressed by the addition of antibiotics or by other factors in the environment, the CidAB proteins possibly oligomerize within the bacterial cell membrane, creating lesions that disrupt the proton motive force, which in turn results in loss of cell viability. These lesions are also hypothesized to regulate the subsequent cell lysis by either allowing the murein hydrolases access to the cell wall substrate and/or regulating their activity by a possible change in the cell wall pH that results from loss of membrane potential.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

>sp|P60638|CIDB_STAAN Holin-like protein CidB OS=Staphylococcus aureus (strain N315) GN=cidB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 2   VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGA 61
           +K + + IF SV+   + +     L  +  G    + V++LPR IT A+ +  VS   G 
Sbjct: 86  IKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIE-VSHELGG 144

Query: 62  NSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALP 121
             ++T   ++ TGLIG+      L   RF   IA+G+   +++H  GTA     + E+  
Sbjct: 145 TDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGA 204

Query: 122 FCAIAYALTGIFGSLICSV 140
           F +I   LT +  S++  V
Sbjct: 205 FSSIGMILTAVISSVLIPV 223

Increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation. Inhibited by the antiholin-like proteins LrgAB. In an unstressed cell, the LrgAB products probably inhibit the function of the CidAB proteins. When a cell is stressed by the addition of antibiotics or by other factors in the environment, the CidAB proteins possibly oligomerize within the bacterial cell membrane, creating lesions that disrupt the proton motive force, which in turn results in loss of cell viability. These lesions are also hypothesized to regulate the subsequent cell lysis by either allowing the murein hydrolases access to the cell wall substrate and/or regulating their activity by a possible change in the cell wall pH that results from loss of membrane potential.

Staphylococcus aureus (strain N315) (taxid: 158879)

>sp|P60637|CIDB_STAAM Holin-like protein CidB OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cidB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 2   VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGA 61
           +K + + IF SV+   + +     L  +  G    + V++LPR IT A+ +  VS   G 
Sbjct: 86  IKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIE-VSHELGG 144

Query: 62  NSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALP 121
             ++T   ++ TGLIG+      L   RF   IA+G+   +++H  GTA     + E+  
Sbjct: 145 TDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGA 204

Query: 122 FCAIAYALTGIFGSLICSV 140
           F +I   LT +  S++  V
Sbjct: 205 FSSIGMILTAVISSVLIPV 223

Increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation. Inhibited by the antiholin-like proteins LrgAB. In an unstressed cell, the LrgAB products probably inhibit the function of the CidAB proteins. When a cell is stressed by the addition of antibiotics or by other factors in the environment, the CidAB proteins possibly oligomerize within the bacterial cell membrane, creating lesions that disrupt the proton motive force, which in turn results in loss of cell viability. These lesions are also hypothesized to regulate the subsequent cell lysis by either allowing the murein hydrolases access to the cell wall substrate and/or regulating their activity by a possible change in the cell wall pH that results from loss of membrane potential.

Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878)

>sp|Q5HD11|CIDB_STAAC Holin-like protein CidB OS=Staphylococcus aureus (strain COL) GN=cidB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 2   VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGA 61
           +K + + IF SV+   + +     L  +  G    + V++LPR IT A+ +  VS   G 
Sbjct: 86  IKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIE-VSHELGG 144

Query: 62  NSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALP 121
             ++T   ++ TGLIG+      L   RF   IA+G+   +++H  GTA     + E+  
Sbjct: 145 TDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGA 204

Query: 122 FCAIAYALTGIFGSLICSV 140
           F +I   LT +  S++  V
Sbjct: 205 FSSIGMILTAVISSVLIPV 223

Increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation. Inhibited by the antiholin-like proteins LrgAB. In an unstressed cell, the LrgAB products probably inhibit the function of the CidAB proteins. When a cell is stressed by the addition of antibiotics or by other factors in the environment, the CidAB proteins possibly oligomerize within the bacterial cell membrane, creating lesions that disrupt the proton motive force, which in turn results in loss of cell viability. These lesions are also hypothesized to regulate the subsequent cell lysis by either allowing the murein hydrolases access to the cell wall substrate and/or regulating their activity by a possible change in the cell wall pH that results from loss of membrane potential.

Staphylococcus aureus (strain COL) (taxid: 93062)

>sp|P60639|CIDB_STAA8 Holin-like protein CidB OS=Staphylococcus aureus (strain NCTC 8325) GN=cidB PE=1 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 2   VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGA 61
           +K + + IF SV+   + +     L  +  G    + V++LPR IT A+ +  VS   G 
Sbjct: 86  IKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIE-VSHELGG 144

Query: 62  NSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALP 121
             ++T   ++ TGLIG+      L   RF   IA+G+   +++H  GTA     + E+  
Sbjct: 145 TDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGA 204

Query: 122 FCAIAYALTGIFGSLICSV 140
           F +I   LT +  S++  V
Sbjct: 205 FSSIGMILTAVISSVLIPV 223

Increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation. Inhibited by the antiholin-like proteins LrgAB. In an unstressed cell, the LrgAB products probably inhibit the function of the CidAB proteins. When a cell is stressed by the addition of antibiotics or by other factors in the environment, the CidAB proteins possibly oligomerize within the bacterial cell membrane, creating lesions that disrupt the proton motive force, which in turn results in loss of cell viability. These lesions are also hypothesized to regulate the subsequent cell lysis by either allowing the murein hydrolases access to the cell wall substrate and/or regulating their activity by a possible change in the cell wall pH that results from loss of membrane potential.

Staphylococcus aureus (strain NCTC 8325) (taxid: 93061)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
255555937	534	conserved hypothetical protein [Ricinus	1.0	0.284	0.953	5e-74
18398254	512	putative membrane protein [Arabidopsis t	1.0	0.296	0.927	6e-72
21593232	512	unknown [Arabidopsis thaliana]	1.0	0.296	0.927	7e-72
224074387	404	predicted protein [Populus trichocarpa]	1.0	0.376	0.927	7e-72
297851634	506	hypothetical protein ARALYDRAFT_473391 [	1.0	0.300	0.927	1e-71
356559047	501	PREDICTED: uncharacterized protein LOC10	1.0	0.303	0.907	4e-71
388515461	290	unknown [Lotus japonicus]	1.0	0.524	0.907	9e-71
242034943	467	hypothetical protein SORBIDRAFT_01g02784	1.0	0.325	0.842	8e-66
222618542	519	hypothetical protein OsJ_01975 [Oryza sa	1.0	0.292	0.842	2e-65
218188317	515	hypothetical protein OsI_02153 [Oryza sa	1.0	0.295	0.842	2e-65

>gi|255555937|ref|XP_002519004.1| conserved hypothetical protein [Ricinus communis] gi|223541991|gb|EEF43537.1| conserved hypothetical protein [Ricinus communis]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/152 (95%), Positives = 149/152 (98%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF SVILST+FSLYSTAL GRLVGLEP+LTVSILPRCITVALALSIVSLFEG
Sbjct: 383 LVKRHAAEIFTSVILSTVFSLYSTALIGRLVGLEPTLTVSILPRCITVALALSIVSLFEG 442

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
           ANSSLTAAVVVVTGL+GANFVQATLDKL+FRDPIARGIATASSAHGLGTAALSAKEPEAL
Sbjct: 443 ANSSLTAAVVVVTGLVGANFVQATLDKLQFRDPIARGIATASSAHGLGTAALSAKEPEAL 502

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAYALTGIFGSLICSVPAVRQSLLAI G
Sbjct: 503 PFCAIAYALTGIFGSLICSVPAVRQSLLAIVG 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398254|ref|NP_564388.1| putative membrane protein [Arabidopsis thaliana] gi|10801363|gb|AAG23435.1|AC084165_1 unknown protein [Arabidopsis thaliana] gi|12321470|gb|AAG50795.1|AC074309_12 unknown protein [Arabidopsis thaliana] gi|14532512|gb|AAK63984.1| At1g32080/F3C3_12 [Arabidopsis thaliana] gi|20855884|gb|AAM26636.1| At1g32080/F3C3_12 [Arabidopsis thaliana] gi|332193313|gb|AEE31434.1| putative membrane protein [Arabidopsis thaliana]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 141/152 (92%), Positives = 145/152 (95%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF SVI+ST+FSLYSTAL GRLVGLEPSLTVSILPRCITVALALSIVSLFEG
Sbjct: 361 LVKRHAAEIFTSVIVSTVFSLYSTALVGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 420

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
            NSSLTAAVVVVTGLIGANFVQ  LDKLR RDPIARGIATASSAHGLGTAALSAKEPEAL
Sbjct: 421 TNSSLTAAVVVVTGLIGANFVQVVLDKLRLRDPIARGIATASSAHGLGTAALSAKEPEAL 480

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAYALTGIFGSL+CSVPAVRQSLLA+ G
Sbjct: 481 PFCAIAYALTGIFGSLLCSVPAVRQSLLAVVG 512

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593232|gb|AAM65181.1| unknown [Arabidopsis thaliana]

 Score =  274 bits (701), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 141/152 (92%), Positives = 145/152 (95%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF SVI+ST+FSLYSTAL GRLVGLEPSLTVSILPRCITVALALSIVSLFEG
Sbjct: 361 LVKRHAAEIFTSVIVSTVFSLYSTALVGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 420

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
            NSSLTAAVVVVTGLIGANFVQ  LDKLR RDPIARGIATASSAHGLGTAALSAKEPEAL
Sbjct: 421 TNSSLTAAVVVVTGLIGANFVQVVLDKLRLRDPIARGIATASSAHGLGTAALSAKEPEAL 480

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAYALTGIFGSL+CSVPAVRQSLLA+ G
Sbjct: 481 PFCAIAYALTGIFGSLLCSVPAVRQSLLAVVG 512

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074387|ref|XP_002304362.1| predicted protein [Populus trichocarpa] gi|222841794|gb|EEE79341.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (701), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 141/152 (92%), Positives = 145/152 (95%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF SVI++TLFSLYSTAL GRLVGLEP+LTVSI+PRCITVALALSIVS FEG
Sbjct: 253 LVKRHAAEIFTSVIVATLFSLYSTALVGRLVGLEPTLTVSIIPRCITVALALSIVSFFEG 312

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
           ANSSLTAAVVVVTGLIGANFVQA LDKL FRDPIARGIATASSAHGLGTAALSAKEPEAL
Sbjct: 313 ANSSLTAAVVVVTGLIGANFVQAVLDKLNFRDPIARGIATASSAHGLGTAALSAKEPEAL 372

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAYALTGIFGSL CSVPAVRQSLLAI G
Sbjct: 373 PFCAIAYALTGIFGSLFCSVPAVRQSLLAIIG 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851634|ref|XP_002893698.1| hypothetical protein ARALYDRAFT_473391 [Arabidopsis lyrata subsp. lyrata] gi|297339540|gb|EFH69957.1| hypothetical protein ARALYDRAFT_473391 [Arabidopsis lyrata subsp. lyrata]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/152 (92%), Positives = 145/152 (95%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF SVI+ST+FSLYSTAL GRLVGLEPSLTVSILPRCITVALALSIVSLFEG
Sbjct: 355 LVKRHAAEIFTSVIVSTVFSLYSTALVGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 414

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
            NSSLTAAVVVVTGLIGANFVQ  LDKLR RDPIARGIATASSAHGLGTAALSAKEPEAL
Sbjct: 415 TNSSLTAAVVVVTGLIGANFVQVVLDKLRLRDPIARGIATASSAHGLGTAALSAKEPEAL 474

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAYALTGIFGSL+CSVPAVRQSLLA+ G
Sbjct: 475 PFCAIAYALTGIFGSLLCSVPAVRQSLLAVVG 506

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559047|ref|XP_003547813.1| PREDICTED: uncharacterized protein LOC100775540 [Glycine max]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/152 (90%), Positives = 146/152 (96%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF SVI+ST+FSLYSTAL GRLV LEPSLTVSILPRCITVALALSIVSLF+G
Sbjct: 350 LVKRHAAEIFTSVIISTVFSLYSTALVGRLVQLEPSLTVSILPRCITVALALSIVSLFDG 409

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
           ANSSLTAAVVV+TGL+GANFVQATLDKL FRDPIARGIATASSAHGLGTAALSAKEPEAL
Sbjct: 410 ANSSLTAAVVVLTGLVGANFVQATLDKLSFRDPIARGIATASSAHGLGTAALSAKEPEAL 469

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAYAL GIFGS++CS+PAVRQSLLAI G
Sbjct: 470 PFCAIAYALNGIFGSILCSIPAVRQSLLAIVG 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515461|gb|AFK45792.1| unknown [Lotus japonicus]

 Score =  271 bits (692), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 138/152 (90%), Positives = 146/152 (96%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF SVI+ST+FSLYSTAL GRLV LEPSLTVSILPRCITVALALSIVSLF+G
Sbjct: 139 LVKRHAAEIFTSVIISTVFSLYSTALVGRLVQLEPSLTVSILPRCITVALALSIVSLFDG 198

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
           AN SLTAAVVVVTGL+GANFVQATLDKLRF+DPIARGIATASSAHGLGTAALSAKEPEAL
Sbjct: 199 ANPSLTAAVVVVTGLVGANFVQATLDKLRFQDPIARGIATASSAHGLGTAALSAKEPEAL 258

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAYAL GIFGSL+CS+PAVRQSL+AI G
Sbjct: 259 PFCAIAYALNGIFGSLLCSIPAVRQSLIAIIG 290

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034943|ref|XP_002464866.1| hypothetical protein SORBIDRAFT_01g027840 [Sorghum bicolor] gi|241918720|gb|EER91864.1| hypothetical protein SORBIDRAFT_01g027840 [Sorghum bicolor]

 Score =  254 bits (649), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 128/152 (84%), Positives = 139/152 (91%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF S+ +++ FSLYSTA+ GRL+GLEPSLT+SILPRCITVALALSIVS FEG
Sbjct: 316 LVKRHAAEIFTSIAIASTFSLYSTAVIGRLIGLEPSLTISILPRCITVALALSIVSFFEG 375

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
            NS+LTAAVVV+TGLIGANFVQA +DKL   DPIARGI TASSAHGLGTAALSAKEPEAL
Sbjct: 376 VNSTLTAAVVVLTGLIGANFVQAAMDKLGLNDPIARGIGTASSAHGLGTAALSAKEPEAL 435

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAY LTGIFGSLICSVPAVRQSL+ IAG
Sbjct: 436 PFCAIAYGLTGIFGSLICSVPAVRQSLVFIAG 467

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222618542|gb|EEE54674.1| hypothetical protein OsJ_01975 [Oryza sativa Japonica Group]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/152 (84%), Positives = 139/152 (91%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF S+ +++ FSLYSTA+ GR++GLEPSLT+SILPRCITVALALSIVS FEG
Sbjct: 368 LVKRHAAEIFTSIAIASTFSLYSTAILGRVIGLEPSLTISILPRCITVALALSIVSFFEG 427

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
            NSSLTAAVVV+TGLIGANFVQA +DKL   DPIARGI TASSAHGLGTAALSAKEPEAL
Sbjct: 428 VNSSLTAAVVVLTGLIGANFVQAAMDKLGLNDPIARGIGTASSAHGLGTAALSAKEPEAL 487

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAY LTGIFGSLICSVPAVRQSL+ IAG
Sbjct: 488 PFCAIAYGLTGIFGSLICSVPAVRQSLVFIAG 519

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218188317|gb|EEC70744.1| hypothetical protein OsI_02153 [Oryza sativa Indica Group]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/152 (84%), Positives = 139/152 (91%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           LVKRHAAEIF S+ +++ FSLYSTA+ GR++GLEPSLT+SILPRCITVALALSIVS FEG
Sbjct: 364 LVKRHAAEIFTSIAIASTFSLYSTAILGRVIGLEPSLTISILPRCITVALALSIVSFFEG 423

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
            NSSLTAAVVV+TGLIGANFVQA +DKL   DPIARGI TASSAHGLGTAALSAKEPEAL
Sbjct: 424 VNSSLTAAVVVLTGLIGANFVQAAMDKLGLNDPIARGIGTASSAHGLGTAALSAKEPEAL 483

Query: 121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
           PFCAIAY LTGIFGSLICSVPAVRQSL+ IAG
Sbjct: 484 PFCAIAYGLTGIFGSLICSVPAVRQSLVFIAG 515

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2031745	512	LrgB [Arabidopsis thaliana (ta	1.0	0.296	0.927	1.9e-67
UNIPROTKB|P0AD19	231	yohK "putative seritonin trans	0.921	0.606	0.312	2.1e-13
UNIPROTKB|Q81Y26	225	BAS3459 "Membrane protein, put	0.907	0.613	0.304	3.9e-12
TIGR_CMR|BA_3731	225	BA_3731 "membrane protein, put	0.907	0.613	0.304	3.9e-12
UNIPROTKB|Q4K5F5	238	PFL_5460 "LrgB family membrane	0.835	0.533	0.305	7.4e-11
UNIPROTKB|Q9KQA0	229	VC_2100 "Putative uncharacteri	0.717	0.475	0.345	7.4e-11
TIGR_CMR|VC_2100	229	VC_2100 "membrane protein, put	0.717	0.475	0.345	7.4e-11
UNIPROTKB|Q48CX9	238	PSPPH_4658 "Membrane protein,	0.861	0.550	0.289	3e-10
UNIPROTKB|Q889L3	238	PSPTO_0736 "Membrane protein,	0.868	0.554	0.270	5.1e-10
UNIPROTKB|Q9KSM4	224	VC_1232 "Putative uncharacteri	0.802	0.544	0.235	8.4e-10

TAIR|locus:2031745 LrgB [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 141/152 (92%), Positives = 145/152 (95%)

Query:     1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
             LVKRHAAEIF SVI+ST+FSLYSTAL GRLVGLEPSLTVSILPRCITVALALSIVSLFEG
Sbjct:   361 LVKRHAAEIFTSVIVSTVFSLYSTALVGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 420

Query:    61 ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
              NSSLTAAVVVVTGLIGANFVQ  LDKLR RDPIARGIATASSAHGLGTAALSAKEPEAL
Sbjct:   421 TNSSLTAAVVVVTGLIGANFVQVVLDKLRLRDPIARGIATASSAHGLGTAALSAKEPEAL 480

Query:   121 PFCAIAYALTGIFGSLICSVPAVRQSLLAIAG 152
             PFCAIAYALTGIFGSL+CSVPAVRQSLLA+ G
Sbjct:   481 PFCAIAYALTGIFGSLLCSVPAVRQSLLAVVG 512

GO:0005886 "plasma membrane" evidence=ISM

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

UNIPROTKB|P0AD19 yohK "putative seritonin transporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 45/144 (31%), Positives = 78/144 (54%)

Query:     9 IFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAA 68
             I +  I S +  +  T++A  L+G  P +  SILP+ +T  +A+++     G   +++A 
Sbjct:    92 ITICFIGSVVAMVTGTSVA-LLMGASPEIAASILPKSVTTPIAMAVGGSIGGI-PAISAV 149

Query:    69 VVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYA 128
              V+  G++GA F    L+ +R R   ARG+A  +++H LGTA  +  + +   F ++A  
Sbjct:   150 CVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALV 209

Query:   129 LTGIFGSLICSVPAVRQSLLAIAG 152
             L GI  SLI   P +   +LA+ G
Sbjct:   210 LCGIITSLIA--PFLFPIILAVMG 231

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q81Y26 BAS3459 "Membrane protein, putative" [Bacillus anthracis (taxid:1392)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 43/141 (30%), Positives = 73/141 (51%)

Query:     1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
             L+K+H   I ++VI+ +  S+ ++AL      ++ SL  S+ P  +T  +A++I  +  G
Sbjct:    81 LLKKHGMAILLNVIVGSFLSVITSALLANYFQIDSSLEHSLAPHIVTTPIAMAISEMI-G 139

Query:    61 ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
               S LTA  VV+T L GA    + +   R +  IA+GI   +SA+G GT+      P   
Sbjct:   140 GMSQLTAVFVVLTALTGALLGPSLIRICRIKTAIAKGIMLGTSANGTGTSKAFEIGPVEG 199

Query:   121 PFCAIAYALTGIFGSLICSVP 141
                +++  LT   G+ +  VP
Sbjct:   200 TIASLSMLLTA--GASLVIVP 218

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_3731 BA_3731 "membrane protein, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 43/141 (30%), Positives = 73/141 (51%)

Query:     1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
             L+K+H   I ++VI+ +  S+ ++AL      ++ SL  S+ P  +T  +A++I  +  G
Sbjct:    81 LLKKHGMAILLNVIVGSFLSVITSALLANYFQIDSSLEHSLAPHIVTTPIAMAISEMI-G 139

Query:    61 ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
               S LTA  VV+T L GA    + +   R +  IA+GI   +SA+G GT+      P   
Sbjct:   140 GMSQLTAVFVVLTALTGALLGPSLIRICRIKTAIAKGIMLGTSANGTGTSKAFEIGPVEG 199

Query:   121 PFCAIAYALTGIFGSLICSVP 141
                +++  LT   G+ +  VP
Sbjct:   200 TIASLSMLLTA--GASLVIVP 218

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4K5F5 PFL_5460 "LrgB family membrane protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 41/134 (30%), Positives = 71/134 (52%)

Query:     4 RHAAEIFMSVILSTLF--SLYSTALA---GRLVGLEPSLTVSILPRCITVALALSIVSLF 58
             R   ++F   IL+TL    + +T+L    G   G E  + +++ P+ +T  +A+ +    
Sbjct:    93 RRIRQLFWP-ILATLVVGGVVATSLGVLLGWWFGAEHMILMTMAPKSVTSPIAMLVAEQI 151

Query:    59 EGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPE 118
              G  ++L A  V++TG+IGA F    L++L    P ARG+A   +AH +GT+    +  E
Sbjct:   152 GGV-AALAAVFVLITGVIGAIFGPGLLNRLGVHGPEARGMALGMTAHAVGTSVALQESEE 210

Query:   119 ALPFCAIAYALTGI 132
                F A+A +L G+
Sbjct:   211 CGAFAALAMSLMGV 224

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KQA0 VC_2100 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 38/110 (34%), Positives = 57/110 (51%)

Query:     1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
             L+++H   + + V++S L ++ ST L  R + L   L  S+  R IT   A+       G
Sbjct:    85 LLRQHWLSLSVGVVVSVLVAISSTVLLARWLNLPDLLQRSLAMRSITTPFAVEATKSI-G 143

Query:    61 ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTA 110
               S LTA  VV+TG+IG    +  L  L  R  + +G +  +SAHG GTA
Sbjct:   144 GQSDLTALFVVLTGVIGMAVGEIILTVLSIRSRLGKGASLGASAHGAGTA 193

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_2100 VC_2100 "membrane protein, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 38/110 (34%), Positives = 57/110 (51%)

Query:     1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
             L+++H   + + V++S L ++ ST L  R + L   L  S+  R IT   A+       G
Sbjct:    85 LLRQHWLSLSVGVVVSVLVAISSTVLLARWLNLPDLLQRSLAMRSITTPFAVEATKSI-G 143

Query:    61 ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTA 110
               S LTA  VV+TG+IG    +  L  L  R  + +G +  +SAHG GTA
Sbjct:   144 GQSDLTALFVVLTGVIGMAVGEIILTVLSIRSRLGKGASLGASAHGAGTA 193

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48CX9 PSPPH_4658 "Membrane protein, putative" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 146 (56.5 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 40/138 (28%), Positives = 73/138 (52%)

Query:     4 RHAAEIFMSVILSTLF--SLYSTALA---GRLVGLEPSLTVSILPRCITVALALSIVSLF 58
             R   ++F  V L+TL    +++T L    G L G +  + +++ P+ +T  +A+ +    
Sbjct:    93 RRIRQLFWPV-LTTLVVGGVFATGLCVGFGVLFGADHMILMTMAPKSVTSPIAMLVAEQI 151

Query:    59 EGANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPE 118
              G  ++L A  V++TG+ GA F    L  +   +P ARG+A   +AH +GT+    +  E
Sbjct:   152 GGV-AALAAVFVLITGVFGAIFGPGLLSLVGVDNPAARGMALGLTAHAVGTSVALQEGEE 210

Query:   119 ALPFCAIAYALTGIFGSL 136
             +  F A+A +L G+  +L
Sbjct:   211 SGAFAALAMSLMGVATAL 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q889L3 PSPTO_0736 "Membrane protein, putative" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 144 (55.7 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 37/137 (27%), Positives = 71/137 (51%)

Query:     4 RHAAEIFMSVILSTLFS-LYSTALA---GRLVGLEPSLTVSILPRCITVALALSIVSLFE 59
             R   ++F  V+ + +   +++T L    G L G +  + +++ P+ +T  +A+ +     
Sbjct:    93 RRIRQLFWPVLTTLVIGGVFATGLCVGLGVLFGADHMILMTMAPKSVTSPIAMLVAEQIG 152

Query:    60 GANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEA 119
             G  ++L A  V++TG+ GA F    L      +P ARG+A   +AH +GT+    +  E+
Sbjct:   153 GV-AALAAVFVLITGVFGAIFGPGLLSLAGVDNPAARGMALGLTAHAVGTSVALQEGEES 211

Query:   120 LPFCAIAYALTGIFGSL 136
               F A+A +L G+  +L
Sbjct:   212 GAFAALAMSLMGVATAL 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KSM4 VC_1232 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 29/123 (23%), Positives = 62/123 (50%)

Query:    15 LSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTG 74
             + ++ S+ + +L    +G +  L  +++ + +T  +A+ +     G   ++ A +V++ G
Sbjct:    91 VGSVMSMITASLIAVSMGADIELIAALMGKSVTTPIAMEVARQL-GGEPAIAAILVLLVG 149

Query:    75 LIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFG 134
             L GA         L    PIA+G+   + +H LGTA  + K+P    F ++A  + G+  
Sbjct:   150 LFGAILAYPIYKLLNITHPIAKGLTMGTVSHALGTATCAEKDPRDAAFSSLALVVCGVIT 209

Query:   135 SLI 137
             S++
Sbjct:   210 SVL 212

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.III.2132.1	hypothetical protein (428 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.02080025	hypothetical protein (465 aa)				•					0.428
	gw1.1305.1.1	hypothetical protein (232 aa)				•					0.401
	estExt_Genewise1_v1.C_LG_III1082	SubName- Full=Putative uncharacterized protein; (144 aa)				•					0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
pfam04172	215	pfam04172, LrgB, LrgB-like family	1e-22
COG1346	230	COG1346, LrgB, Putative effector of murein hydrola	8e-22
TIGR00659	226	TIGR00659, TIGR00659, TIGR00659 family protein	2e-18
PRK04288	232	PRK04288, PRK04288, antiholin-like protein LrgB; P	7e-08
PRK10711	231	PRK10711, PRK10711, hypothetical protein; Provisio	7e-08

>gnl|CDD|146683 pfam04172, LrgB, LrgB-like family

 Score = 88.7 bits (221), Expect = 1e-22
 Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 1/137 (0%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           L+KRH   I + ++  ++ ++ S  L  +L+GL+  L  S+LP+ +T  +A+ +     G
Sbjct: 72  LLKRHWLPILVGIVAGSVVAIVSGVLLAKLLGLDEELIASLLPKSVTTPIAMEVSESI-G 130

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
              +LTA  V++TG++GA      L  L  + P+ARG+A  +++H +GTA       E  
Sbjct: 131 GIPALTAVFVILTGILGAILGPPLLKLLGIKHPVARGLALGTASHAVGTARALELGEEEG 190

Query: 121 PFCAIAYALTGIFGSLI 137
              ++A  L+GI   L+
Sbjct: 191 AMSSLAMVLSGIITVLL 207

The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance. Length = 215

>gnl|CDD|224265 COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

 Score = 86.9 bits (216), Expect = 8e-22
 Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 1/137 (0%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           L+KRH   I   V++ ++ ++ S  L  +L GL P L +S+LP+ +T  +A+  VS   G
Sbjct: 85  LIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKSVTTPIAME-VSESIG 143

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEAL 120
              +LTA  V++TG++GA      L  LR R P+ARG+A  +++H LGTA       E  
Sbjct: 144 GIPALTAVFVILTGILGAVLGPLLLKLLRIRHPVARGLALGTASHALGTARAIELGEEEG 203

Query: 121 PFCAIAYALTGIFGSLI 137
              ++A  L GI   L+
Sbjct: 204 AMSSLAMVLCGIITVLL 220

Length = 230

>gnl|CDD|129744 TIGR00659, TIGR00659, TIGR00659 family protein

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 2   VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGA 61
           +K++  EI ++V + ++ ++ S  L   L+GL P +  S+LP+ +T  +A+  VS   G 
Sbjct: 83  IKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSVTTPIAMH-VSEMIGG 141

Query: 62  NSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALP 121
             ++TA  V++TGL+G  F    L   R ++ IARG+   +S+HGLGTA     +  A  
Sbjct: 142 IPAVTAVFVILTGLLGTVFGPMVLRYFRVKNEIARGLLLGTSSHGLGTARCFELDSVAGA 201

Query: 122 FCAIAYALTGIFGSLI 137
             +++  L GI  S I
Sbjct: 202 ISSLSMVLCGIITSWI 217

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup [Hypothetical proteins, Conserved]. Length = 226

>gnl|CDD|179810 PRK04288, PRK04288, antiholin-like protein LrgB; Provisional

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 1   LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEG 60
           ++K++  +I   +++ ++ S+    L  +L+ L+ ++  S+LP+  T A+AL  VS   G
Sbjct: 88  VLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQAATTAIALP-VSAGIG 146

Query: 61  ANSSLTAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATASSAHGLGTAA 111
               +T+  V+   +I        L   R ++PIA+G+A  +S H LG A 
Sbjct: 147 GIKEITSFAVIFNAVIIYALGAKFLKLFRIKNPIAKGLALGTSGHALGVAV 197

Length = 232

>gnl|CDD|182666 PRK10711, PRK10711, hypothetical protein; Provisional

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 30  LVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDKLR 89
            +G  P +  SILP+ +T  +A+++     G   +++A  V+  G++GA F    L+ +R
Sbjct: 112 WMGATPEIAASILPKSVTTPIAMAVGGSIGGI-PAISAVCVIFVGILGAVFGHTLLNAMR 170

Query: 90  FRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLI 137
            R   ARG+A  +++H LGTA  +  + +   F ++A  + GI  SLI
Sbjct: 171 IRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVICGIITSLI 218

Length = 231

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
PRK10711	231	hypothetical protein; Provisional	100.0
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	100.0
PRK04288	232	antiholin-like protein LrgB; Provisional	100.0
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	100.0
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	100.0
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.97
COG0385	319	Predicted Na+-dependent transporter [General funct	93.99
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	93.79
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	93.77
TIGR00698	335	conserved hypothetical integral membrane protein.	93.38
TIGR00841	286	bass bile acid transporter. Functionally character	93.28
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	92.58
PRK04288	232	antiholin-like protein LrgB; Provisional	92.26
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	91.73
COG2855	334	Predicted membrane protein [Function unknown]	91.48
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	91.29
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	90.78
PRK10711	231	hypothetical protein; Provisional	90.53
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	88.56
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	87.83
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	87.51
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	86.94
TIGR00808	254	malonate_madM malonate transporter, MadM subunit.	85.0
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	84.51
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	83.25
PRK03818	552	putative transporter; Validated	82.69
PRK04972	558	putative transporter; Provisional	82.1
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	81.57
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	81.43
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	81.22

>PRK10711 hypothetical protein; Provisional

Probab=100.00  E-value=4.2e-50  Score=329.25  Aligned_cols=149  Identities=26%  Similarity=0.485  Sum_probs=144.2

Q ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501            1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF   80 (152)
Q Consensus         1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~   80 (152)
                      .+||||+||+.++.+|++++++++++++++||+|+|+..|++||||||||||+++|++|| +|++|+++|++||++|+++
T Consensus        83 ~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIAm~is~~iGG-~~sLta~~ViitGi~Ga~~  161 (231)
T PRK10711         83 QIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSVTTPIAMAVGGSIGG-IPAISAVCVIFVGILGAVF  161 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999999999999999999999999999999999999999999 7999999999999999999


Q ss_pred             HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhC
Q 043501           81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIAG  152 (152)
Q Consensus        81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l~~~~g  152 (152)
                      ||+++|++|||||++||+++|++||++||||++|+||+||+|||++|+++|++|+++  +|++.++++.+-|
T Consensus       162 g~~llk~~rI~~~~A~G~alG~aaHaiGTAkA~e~~~~~Ga~ssLam~l~Gi~ta~~--~P~~~~l~~~~~~  231 (231)
T PRK10711        162 GHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVICGIITSLI--APFLFPLILALMG  231 (231)
T ss_pred             HHHHHHHcCCCCHHHHHHHHhHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999998  4899988877654

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.6e-50  Score=328.86  Aligned_cols=145  Identities=34%  Similarity=0.581  Sum_probs=140.9

Q ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501            1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF   80 (152)
Q Consensus         1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~   80 (152)
                      ++||||++|+.++++|+++++.+.++++|+||+|+|+.+|++|||||||||||+||++|| .|++|+++|++||++|+++
T Consensus        85 ~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkSvTTpiAm~vs~~iGG-ip~ltav~Vi~tGi~Gavl  163 (230)
T COG1346          85 LIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKSVTTPIAMEVSESIGG-IPALTAVFVILTGILGAVL  163 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcccccccHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999999999999999999999 6999999999999999999


Q ss_pred             HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043501           81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLL  148 (152)
Q Consensus        81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l~  148 (152)
                      ||.++|++|||||.|||+++|++||++||||++|.||+||||||++|+++|++|++++  |++.+++.
T Consensus       164 g~~llk~~~i~~~~ArGla~G~~sHa~GTara~E~g~~eGa~ssL~m~L~Gi~t~~~a--Pll~~l~~  229 (230)
T COG1346         164 GPLLLKLLRIRHPVARGLALGTASHALGTARAIELGEEEGAMSSLAMVLCGIITVLLA--PLLAHLIL  229 (230)
T ss_pred             HHHHHHHhccCcHHHhHHhhcchhhhhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999984  88888764

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=100.00  E-value=5.6e-50  Score=328.60  Aligned_cols=144  Identities=23%  Similarity=0.371  Sum_probs=139.8

Q ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501            1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF   80 (152)
Q Consensus         1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~   80 (152)
                      .+||||++|++++++|+.++++++++++++||+|+++..|++||||||||||+++|++|| +|++|+++|++||++|+++
T Consensus        88 ~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKSVTtPIAm~is~~iGG-~psLtA~~ViitGi~Gai~  166 (232)
T PRK04288         88 VLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQAATTAIALPVSAGIGG-IKEITSFAVIFNAVIIYAL  166 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHhhhHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHH
Confidence            389999999999999999999999999999999999999999999999999999999999 7999999999999999999


Q ss_pred             HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043501           81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSL  147 (152)
Q Consensus        81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l  147 (152)
                      ||+++|++|||||++||+++|++||++||+|++|++|++|+|||++|+++|++|++++  |++.+++
T Consensus       167 g~~llk~~~I~~~~a~GlalG~asHaiGTarA~e~~~~~Ga~sslam~l~gi~tail~--P~l~~l~  231 (232)
T PRK04288        167 GAKFLKLFRIKNPIAKGLALGTSGHALGVAVGIEMGEVEAAMASIAVVVVGVVTVAVV--PVFVPII  231 (232)
T ss_pred             HHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999985  8877654

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=100.00  E-value=1.1e-48  Score=319.92  Aligned_cols=144  Identities=31%  Similarity=0.522  Sum_probs=139.8

Q ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501            1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF   80 (152)
Q Consensus         1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~   80 (152)
                      .+||||+||+.++.+|+.++++++++++++||+|+++..|++|||||||+||+++|++|| +|++|+++|++||++|+++
T Consensus        82 ~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpiAm~vs~~iGG-~~sLta~~vvitGi~Ga~~  160 (226)
T TIGR00659        82 QIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSVTTPIAMHVSEMIGG-IPAVTAVFVILTGLLGTVF  160 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHHhhHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999999999999999999999999999999999999999999 7999999999999999999


Q ss_pred             HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043501           81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSL  147 (152)
Q Consensus        81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l  147 (152)
                      ||+++|++|||||++||+++|++||++||+|++|+||++|+|||++|+++|++|+++.  |++.+++
T Consensus       161 g~~ll~~~~i~~~~A~GlalG~aaHaiGTa~a~e~~~~~Ga~ssLam~l~gi~ta~l~--P~l~~l~  225 (226)
T TIGR00659       161 GPMVLRYFRVKNEIARGLLLGTSSHGLGTARCFELDSVAGAISSLSMVLCGIITSWIA--PFLFHLI  225 (226)
T ss_pred             HHHHHHHcCCCcHHHHHHHHhHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999984  8877654

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=100.00  E-value=1.1e-48  Score=318.14  Aligned_cols=143  Identities=36%  Similarity=0.617  Sum_probs=139.4

Q ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501            1 LVKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF   80 (152)
Q Consensus         1 ~lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~   80 (152)
                      .+||||++++.++.+|+++++++++++++++|+|+|+.+|++|||||||+|+|++|++|| +|++|+++|++||++|+++
T Consensus        72 ~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiAi~is~~iGG-~~sLta~~VvitGi~Ga~~  150 (215)
T PF04172_consen   72 LLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIAIEISEQIGG-IPSLTAVFVVITGILGAVL  150 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhHHHHh
Confidence            379999999999999999999999999999999999999999999999999999999999 7999999999999999999


Q ss_pred             HHHHHhhcCcCCchhhHhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 043501           81 VQATLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQS  146 (152)
Q Consensus        81 g~~ll~~~~I~~~~a~GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~  146 (152)
                      ||+++|++|||||+|||+++|++||++||+|++|++|++|+||+++|+++|++|++++  |++.++
T Consensus       151 g~~llk~~~I~~~~A~GlalG~~sHaiGTa~a~e~~~~~ga~sslam~l~gi~t~~~~--P~~~~l  214 (215)
T PF04172_consen  151 GPPLLKLLRIKDPVARGLALGTASHAIGTARALEIGEEAGAFSSLAMILSGILTALLA--PLLAPL  214 (215)
T ss_pred             HHHHHhHcccccHHHHHHHhccchHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999984  888765

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.97  E-value=0.08  Score=45.43  Aligned_cols=116  Identities=19%  Similarity=0.222  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHhhhh----hhhHHHHH-HHHhhCCCchhHHHHHHHHHHHHHHhhHH
Q 043501            9 IFMSVILSTLFSLYSTALAG-RLVGLEPSLTVSILPRC----ITVALALS-IVSLFEGANSSLTAAVVVVTGLIGANFVQ   82 (152)
Q Consensus         9 il~~~~~g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkS----vTtpiAi~-is~~igG~~~slta~~vi~tGi~G~~~g~   82 (152)
                      -+.-..+.....+..+++++ |+|++|++...=+..-+    ++.-+|++ +-+.=.- +.+.+...|.+-|.+..++-|
T Consensus        85 ~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~-~~a~ava~V~lfg~vam~~~P  163 (305)
T PF03601_consen   85 GLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEE-DVAYAVATVFLFGTVAMFLYP  163 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCC-ceeeeehHHHHHHHHHHHHHH
Confidence            34445666677788889999 99999999765443322    12222221 1122223 578888899999999999999


Q ss_pred             HHHhhcCcCCchhhHhhhhhcchhhhhHH--hhhcCCcchhHHHHH
Q 043501           83 ATLDKLRFRDPIARGIATASSAHGLGTAA--LSAKEPEALPFCAIA  126 (152)
Q Consensus        83 ~ll~~~~I~~~~a~GlalG~~aHaiGTa~--a~~~~~~~ga~asla  126 (152)
                      .+-++++.+ |..-|+=.|.+=|-.+-.-  ....+++++.++.+.
T Consensus       164 ~l~~~l~l~-~~~~G~w~G~sIh~~aqVvaAg~~~g~~a~~~A~iv  208 (305)
T PF03601_consen  164 LLGHALGLS-PQQFGAWAGGSIHDTAQVVAAGAIYGEEAGDVATIV  208 (305)
T ss_pred             HHHHHhCCC-HHHHHHHhhhhhcccchHhhhhhccChHHHHHHHHH
Confidence            999999998 7788888888877766554  444577777755543

; GO: 0016021 integral to membrane

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=93.99  E-value=0.64  Score=40.47  Aligned_cols=82  Identities=21%  Similarity=0.338  Sum_probs=70.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHH
Q 043501            3 KRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSIL-----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIG   77 (152)
Q Consensus         3 k~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G   77 (152)
                      -|||++.++++.+=-.+=-..++.+++++.+|+|+...+.     |-.++.   .-.+..-+| |.+++....-++-++|
T Consensus        64 ~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S---~~~t~lAkG-nValsV~~tsvStll~  139 (319)
T COG0385          64 LKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVAS---NAMTYLAKG-NVALSVCSTSVSTLLG  139 (319)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhH---HHHHHHhcC-cHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999887664     656665   444555668 8999999999999999


Q ss_pred             HhhHHHHHhhc
Q 043501           78 ANFVQATLDKL   88 (152)
Q Consensus        78 ~~~g~~ll~~~   88 (152)
                      ..+-|.+..++
T Consensus       140 ~f~tPllv~l~  150 (319)
T COG0385         140 PFLTPLLVGLL  150 (319)
T ss_pred             HHHHHHHHHHH
Confidence            99999999884

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=93.79  E-value=1  Score=35.17  Aligned_cols=85  Identities=15%  Similarity=0.193  Sum_probs=62.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHhhhhh--hhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHh
Q 043501            3 KRHAAEIFMSVILSTLFSLYSTALAG-RLVGLEPSLTVSILPRCI--TVALALSIVSLFEGANSSLTAAVVVVTGLIGAN   79 (152)
Q Consensus         3 k~~~~~il~~~~~g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkSv--TtpiAi~is~~igG~~~slta~~vi~tGi~G~~   79 (152)
                      +|+.+.++.+++.--++--..++.++ +.++.+++....+.-=+.  ..|.+--.++..|| |.+++...+.++-+.-..
T Consensus        24 ~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~G-d~~ls~~lt~istll~~~  102 (187)
T PF01758_consen   24 LRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAGG-DVALSVSLTLISTLLAPF  102 (187)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhCC-CcccccceeeHHHHHHHH
Confidence            46778899999999999999999999 889999995544433222  23344445666678 899999999999999999


Q ss_pred             hHHHHHhhc
Q 043501           80 FVQATLDKL   88 (152)
Q Consensus        80 ~g~~ll~~~   88 (152)
                      +-|..+.++
T Consensus       103 ~~P~~~~l~  111 (187)
T PF01758_consen  103 LMPLLLYLL  111 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999876

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>TIGR00832 acr3 arsenical-resistance protein

Probab=93.77  E-value=0.75  Score=39.61  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHH-----HhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHH
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGRLV-GLEPSLTVS-----ILPRCITVALALSIVSLFEGANSSLTAAVVVVTGL   75 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~l-gl~~~~~~S-----l~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi   75 (152)
                      ..|++++++.+...--++--..++.+++++ +.++++...     ..|=.++   ..-.+..-+| |.+++...+.++.+
T Consensus        68 ~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~---S~v~T~lAkG-nvalsv~lt~~stL  143 (328)
T TIGR00832        68 VFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAM---VFVWNQLAKG-DPEYTLVLVAVNSL  143 (328)
T ss_pred             HHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHH---HHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            357899999999999999999999999985 999996654     4565443   3444555557 89999999999999


Q ss_pred             HHHhhHHHHHhhc
Q 043501           76 IGANFVQATLDKL   88 (152)
Q Consensus        76 ~G~~~g~~ll~~~   88 (152)
                      ++.++-|+++..+
T Consensus       144 l~~~~~P~l~~ll  156 (328)
T TIGR00832       144 FQVFLYAPLAWLL  156 (328)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988655

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=93.38  E-value=1.1  Score=39.19  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHH-HHhCCChHHHHHHhhhh----hhhHHHHHHHHhhCC--CchhHHHHHHHHHHHHHHhhHHHHHhhc
Q 043501           16 STLFSLYSTALAG-RLVGLEPSLTVSILPRC----ITVALALSIVSLFEG--ANSSLTAAVVVVTGLIGANFVQATLDKL   88 (152)
Q Consensus        16 g~~~~~~~~~~l~-~~lgl~~~~~~Sl~pkS----vTtpiAi~is~~igG--~~~slta~~vi~tGi~G~~~g~~ll~~~   88 (152)
                      -....++.+++++ |+|++|++...=+..-+    ++.-+|  ++..+..  .+.+.+...|.+-|.+...+-|++.+++
T Consensus        98 ~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A--~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l  175 (335)
T TIGR00698        98 ILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAA--IEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYA  175 (335)
T ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHH--hccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence            3344566678888 79999999765444322    112222  2222322  2567888889999999999999999999


Q ss_pred             C-cCCchhhHhhhhhcchhhhhHH--hhhcCCcchhHHHHH
Q 043501           89 R-FRDPIARGIATASSAHGLGTAA--LSAKEPEALPFCAIA  126 (152)
Q Consensus        89 ~-I~~~~a~GlalG~~aHaiGTa~--a~~~~~~~ga~asla  126 (152)
                      + .-++...|+=.|.+=|-.+-.-  ....+|+++.+|.+.
T Consensus       176 ~~~ls~~~~G~w~G~tIh~vaqVvAAg~~~~~~a~~~Ativ  216 (335)
T TIGR00698       176 SHLISPDEFGIYAGSTVHEVAQVKASGQLIGPIVENEAVII  216 (335)
T ss_pred             cccCCHHHHHHHhhhhHhhHHHHHHHhhhcCHHHHHHHHHH
Confidence            6 2346689999999877766544  333467777666543

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>TIGR00841 bass bile acid transporter

Probab=93.28  E-value=0.98  Score=37.92  Aligned_cols=81  Identities=16%  Similarity=0.260  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHH
Q 043501            4 RHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSIL-----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGA   78 (152)
Q Consensus         4 ~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~   78 (152)
                      |+++.+..+++.--++--..++.+++++++|++....+.     |-..+.   .-.++..|| |.++++..+.++-+.+.
T Consensus        35 ~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s---~v~t~~~~g-n~~la~~~~~~stlls~  110 (286)
T TIGR00841        35 RKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTAS---NVFTYLLKG-DMALSISMTTCSTLLAL  110 (286)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHH---HHHHHHhCC-CHhhhhHHHHHHHHHHH
Confidence            455688888888888888889999999999999776554     444444   458888888 89999999999999999


Q ss_pred             hhHHHHHhhc
Q 043501           79 NFVQATLDKL   88 (152)
Q Consensus        79 ~~g~~ll~~~   88 (152)
                      +.-|.++..+
T Consensus       111 vt~Pl~l~~~  120 (286)
T TIGR00841       111 GMMPLLLYIY  120 (286)
T ss_pred             HHHHHHHHHH
Confidence            9999988776

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=92.58  E-value=2.4  Score=33.47  Aligned_cols=84  Identities=24%  Similarity=0.341  Sum_probs=61.8

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHhhhhhhhHHHHHHHHhh-CCC-chh--HHHHHHHHHHHH
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGR-LVGLEPSLTVSILPRCITVALALSIVSLF-EGA-NSS--LTAAVVVVTGLI   76 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~-~lgl~~~~~~Sl~pkSvTtpiAi~is~~i-gG~-~~s--lta~~vi~tGi~   76 (152)
                      +||+.++.+.--++-+.+....++.++| ++++|+....-...=+.|.|=++.-+++. ... .|+  +.=.....-|++
T Consensus        79 l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A~~~~~~~~~~~~~vgYa~~Yp~g~i  158 (169)
T PF06826_consen   79 LKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGIAAGILAGALTSTPALAAAQEAISDSGIPAIAVGYAVTYPFGVI  158 (169)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccccCcHHHHHHHHhhhcCCCchhhhhHHHHHHHHHH
Confidence            5778666666666666788888888998 99999999999999999999999888887 321 355  444445555677


Q ss_pred             HHhhHHHHH
Q 043501           77 GANFVQATL   85 (152)
Q Consensus        77 G~~~g~~ll   85 (152)
                      +.++-..++
T Consensus       159 ~~il~~~~i  167 (169)
T PF06826_consen  159 GVILFVQLI  167 (169)
T ss_pred             HHHHHHHHH
Confidence            766655443

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=92.26  E-value=2  Score=35.77  Aligned_cols=75  Identities=15%  Similarity=0.235  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh----hhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501           11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSILP----RCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD   86 (152)
Q Consensus        11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~p----kSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~   86 (152)
                      +-+++-++++...+..+-|+++.+++..+.+.-    .-+=|..|+|..|.- |   +.+.....++|++-+++.|++++
T Consensus       154 ~~ViitGi~Gai~g~~llk~~~I~~~~a~GlalG~asHaiGTarA~e~~~~~-G---a~sslam~l~gi~tail~P~l~~  229 (232)
T PRK04288        154 FAVIFNAVIIYALGAKFLKLFRIKNPIAKGLALGTSGHALGVAVGIEMGEVE-A---AMASIAVVVVGVVTVAVVPVFVP  229 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHcCcHH-H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778889999999999999998776654    445566777777755 3   57777889999999999999998


Q ss_pred             hcC
Q 043501           87 KLR   89 (152)
Q Consensus        87 ~~~   89 (152)
                      +++
T Consensus       230 l~~  232 (232)
T PRK04288        230 IIG  232 (232)
T ss_pred             HhC
Confidence            754

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=91.73  E-value=2.8  Score=34.80  Aligned_cols=74  Identities=16%  Similarity=0.250  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhh----hhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHhh
Q 043501           12 SVILSTLFSLYSTALAGRLVGLEPSLTVSILPRC----ITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLDK   87 (152)
Q Consensus        12 ~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS----vTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~~   87 (152)
                      -+++.++++...+..+-++++.+++..+.+.--+    +=|.-|+|..|+- |   +.......++|++-+++.|+++++
T Consensus       149 ~vvitGi~Ga~~g~~ll~~~~i~~~~A~GlalG~aaHaiGTa~a~e~~~~~-G---a~ssLam~l~gi~ta~l~P~l~~l  224 (226)
T TIGR00659       149 FVILTGLLGTVFGPMVLRYFRVKNEIARGLLLGTSSHGLGTARCFELDSVA-G---AISSLSMVLCGIITSWIAPFLFHL  224 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhHHHHHHHHHHHHHcCchH-H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667888889999999999999877766544    5566666776654 2   567777899999999999999876


Q ss_pred             cC
Q 043501           88 LR   89 (152)
Q Consensus        88 ~~   89 (152)
                      .|
T Consensus       225 ~~  226 (226)
T TIGR00659       225 IK  226 (226)
T ss_pred             hC
Confidence            53

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>COG2855 Predicted membrane protein [Function unknown]

Probab=91.48  E-value=1.5  Score=38.50  Aligned_cols=112  Identities=21%  Similarity=0.265  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhh-hhhhHHHHHHH-HhhCC--CchhHHHHHHHHHHHHHHhhHHHHHhh
Q 043501           12 SVILSTLFSLYSTALAGRLVGLEPSLTVSILPR-CITVALALSIV-SLFEG--ANSSLTAAVVVVTGLIGANFVQATLDK   87 (152)
Q Consensus        12 ~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pk-SvTtpiAi~is-~~igG--~~~slta~~vi~tGi~G~~~g~~ll~~   87 (152)
                      ....--..+++.++++++++|+|+++..=...- |+-=.=|+-.. ..++.  .+.+.+...|.+-|.+.+++-|++.++
T Consensus        98 ~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~  177 (334)
T COG2855          98 IIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPL  177 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence            333444567888999999999999976544322 22111121111 11111  145677788888899999999999999


Q ss_pred             cCcCCchhhHhhhhhcchhhhhHH--hhhcCCcchhHHH
Q 043501           88 LRFRDPIARGIATASSAHGLGTAA--LSAKEPEALPFCA  124 (152)
Q Consensus        88 ~~I~~~~a~GlalG~~aHaiGTa~--a~~~~~~~ga~as  124 (152)
                      ++ -||...|+=.|++=|-++-..  ....|++++..|.
T Consensus       178 l~-l~~~~~GifaG~TvHeVaqVvaAg~~~~~~a~~~A~  215 (334)
T COG2855         178 LG-LSPEQFGIFAGSTVHEVAQVVAAGGAIGPEAANTAT  215 (334)
T ss_pred             hC-CCcchheeeechhHHHHHHHHHhcccCCchhhhHHH
Confidence            99 678889999999988776544  3334666655333

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=91.29  E-value=5.4  Score=30.58  Aligned_cols=83  Identities=19%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSL-TVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF   80 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~-~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~   80 (152)
                      ++|++.+.+.....-...+...++++.|+.+.|.+. ..+..|=-.+.=..  ++++.|. |+...+.+=.+==++-...
T Consensus        72 ~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La~~PGGl~~m~~--~A~~~ga-d~~~V~~~q~~Rl~~v~~~  148 (156)
T TIGR03082        72 LKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFLATSPGGASEMAA--LAAELGA-DVAFVAAMQTLRLLFVVLL  148 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhCCchHHHHHH--HHHHhCC-CHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999874 56777776664333  4567777 7887776544333333344


Q ss_pred             HHHHHhh
Q 043501           81 VQATLDK   87 (152)
Q Consensus        81 g~~ll~~   87 (152)
                      -|++.++
T Consensus       149 ~P~i~~~  155 (156)
T TIGR03082       149 VPLLARL  155 (156)
T ss_pred             HHHHHhh
Confidence            5555554

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=90.78  E-value=2.6  Score=34.60  Aligned_cols=74  Identities=12%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh----hhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501           11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSILP----RCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD   86 (152)
Q Consensus        11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~p----kSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~   86 (152)
                      +.+++-++++...+..+.|+++.++++.+.+.-    ..+=|.-|+|..|+-|    +.+.....++|++-+++.|.+++
T Consensus       138 ~~VvitGi~Ga~~g~~llk~~~I~~~~A~GlalG~~sHaiGTa~a~e~~~~~g----a~sslam~l~gi~t~~~~P~~~~  213 (215)
T PF04172_consen  138 VFVVITGILGAVLGPPLLKLLRIKDPVARGLALGTASHAIGTARALEIGEEAG----AFSSLAMILSGILTALLAPLLAP  213 (215)
T ss_pred             HHHHHHhhHHHHhHHHHHhHcccccHHHHHHHhccchHHHHHHHHHHcCchHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677778899999999999998877765    4455666777766542    56777788999999999999987


Q ss_pred             hc
Q 043501           87 KL   88 (152)
Q Consensus        87 ~~   88 (152)
                      ++
T Consensus       214 li  215 (215)
T PF04172_consen  214 LI  215 (215)
T ss_pred             hC
Confidence            63

>PRK10711 hypothetical protein; Provisional

Probab=90.53  E-value=3.3  Score=34.48  Aligned_cols=73  Identities=8%  Similarity=0.079  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501           11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSIL----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD   86 (152)
Q Consensus        11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~   86 (152)
                      +.+++.++++...+..+.|+++.++++.+.+.    ..-+=|..|+|..|+-|    +.......++|++-+++.|++.+
T Consensus       149 ~~ViitGi~Ga~~g~~llk~~rI~~~~A~G~alG~aaHaiGTAkA~e~~~~~G----a~ssLam~l~Gi~ta~~~P~~~~  224 (231)
T PRK10711        149 VCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEG----AFSSLALVICGIITSLIAPFLFP  224 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhhHHHHHHHHHHcCcHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777889999999999999999877665    45566777788877653    56777788999999999999887


Q ss_pred             h
Q 043501           87 K   87 (152)
Q Consensus        87 ~   87 (152)
                      +
T Consensus       225 l  225 (231)
T PRK10711        225 L  225 (231)
T ss_pred             H
Confidence            6

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=88.56  E-value=6.6  Score=33.56  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=67.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHH-----HhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHH
Q 043501            3 KRHAAEIFMSVILSTLFSLYSTALAGRLV--GLEPSLTVS-----ILPRCITVALALSIVSLFEGANSSLTAAVVVVTGL   75 (152)
Q Consensus         3 k~~~~~il~~~~~g~~~~~~~~~~l~~~l--gl~~~~~~S-----l~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi   75 (152)
                      .|||+..+.....--++--..++.+.+++  ..++|+...     .+|-++...++  .+++-|| |.+.+.....++-+
T Consensus        57 ~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~--~T~~AgG-N~a~Al~~~~~snl  133 (313)
T PF13593_consen   57 LRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVV--LTRLAGG-NVALALFNAVLSNL  133 (313)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHH--HHHHcCC-CHHHHHHHHHHHhh
Confidence            47889999888888888888888888888  467776554     45666666554  4677888 99999999999999


Q ss_pred             HHHhhHHHHHhhcC
Q 043501           76 IGANFVQATLDKLR   89 (152)
Q Consensus        76 ~G~~~g~~ll~~~~   89 (152)
                      +|..+-|.+++++-
T Consensus       134 lgv~ltP~ll~l~l  147 (313)
T PF13593_consen  134 LGVFLTPLLLLLLL  147 (313)
T ss_pred             hhHhHHHHHHHHHh
Confidence            99999999998864

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=87.83  E-value=13  Score=32.39  Aligned_cols=76  Identities=20%  Similarity=0.197  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhcCcCCchhhHhhhh--hcchhhhhHHhhhcCCcchhHHHHHHHH---HHHHHHHHhhh
Q 043501           66 TAAVVVVTGLIGANFVQATLDKLRFRDPIARGIATA--SSAHGLGTAALSAKEPEALPFCAIAYAL---TGIFGSLICSV  140 (152)
Q Consensus        66 ta~~vi~tGi~G~~~g~~ll~~~~I~~~~a~GlalG--~~aHaiGTa~a~~~~~~~ga~aslam~l---~gi~t~i~~~~  140 (152)
                      ....+++|++++..++    |++|.+++.  |++.|  +.+..-|-+...+-|+.-.+++..|-..   +-++|++++  
T Consensus       225 ~v~vv~~t~~~~~~i~----rllg~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~--  296 (312)
T PRK12460        225 GVLVTIVTGFFNIFAD----RLVGGTGIA--GAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILT--  296 (312)
T ss_pred             HHHHHHHHHHHHHHHH----HHhCCChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3556667777777666    444544444  78888  4444555566777777777777776554   345667774  


Q ss_pred             HHHHHHHHH
Q 043501          141 PAVRQSLLA  149 (152)
Q Consensus       141 P~~~~~l~~  149 (152)
                      |++..|+.+
T Consensus       297 P~~t~~~~k  305 (312)
T PRK12460        297 PLLTSWVAK  305 (312)
T ss_pred             HHHHHHHHH
Confidence            888888654

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=87.51  E-value=6.4  Score=32.90  Aligned_cols=74  Identities=14%  Similarity=0.176  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhh----hhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhHHHHHh
Q 043501           11 MSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRC----ITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQATLD   86 (152)
Q Consensus        11 ~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS----vTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g~~ll~   86 (152)
                      +.+..-++++.+.++.+.|+++..+.++..+.--+    +=|.-|+|..|+-    -+.+....+++|++-+++.|.+.+
T Consensus       151 v~Vi~tGi~Gavlg~~llk~~~i~~~~ArGla~G~~sHa~GTara~E~g~~e----Ga~ssL~m~L~Gi~t~~~aPll~~  226 (230)
T COG1346         151 VFVILTGILGAVLGPLLLKLLRIRHPVARGLALGTASHALGTARAIELGEEE----GAMSSLAMVLCGIITVLLAPLLAH  226 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcHHHhHHhhcchhhhhhhHHHHHcCchH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666778888999999999999999887776554    4566666665544    367788889999999999999998


Q ss_pred             hc
Q 043501           87 KL   88 (152)
Q Consensus        87 ~~   88 (152)
                      ++
T Consensus       227 l~  228 (230)
T COG1346         227 LI  228 (230)
T ss_pred             Hh
Confidence            75

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=86.94  E-value=13  Score=31.27  Aligned_cols=86  Identities=15%  Similarity=0.155  Sum_probs=65.0

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhh--hHHHHHHHHhhCCCchhHHHHHHHHHHHHHHh
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCIT--VALALSIVSLFEGANSSLTAAVVVVTGLIGAN   79 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvT--tpiAi~is~~igG~~~slta~~vi~tGi~G~~   79 (152)
                      +|++++.+...+.+=-++.-...+.+.+++++|++......--+..  ...+.-.+++.|+ |++.++..+.+|=++..+
T Consensus       233 ~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~-~~~~aa~~v~~sT~ls~~  311 (321)
T TIGR00946       233 IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEV-DVELASTAVTLSTVLSLI  311 (321)
T ss_pred             hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCC-CHHHHHHHHHHHHHHHHH
Confidence            3556677777777777788888888899999998876555544432  2234567899998 899999999998888887


Q ss_pred             hHHHHHhhc
Q 043501           80 FVQATLDKL   88 (152)
Q Consensus        80 ~g~~ll~~~   88 (152)
                      .-|.++..+
T Consensus       312 tlp~~~~l~  320 (321)
T TIGR00946       312 SLPLFIILL  320 (321)
T ss_pred             HHHHHHHHh
Confidence            777776654

>TIGR00808 malonate_madM malonate transporter, MadM subunit

Probab=85.00  E-value=2.9  Score=34.91  Aligned_cols=137  Identities=15%  Similarity=0.246  Sum_probs=85.7

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHH-HhhCCCchhHHHHHHHHHH----HH
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIV-SLFEGANSSLTAAVVVVTG----LI   76 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is-~~igG~~~slta~~vi~tG----i~   76 (152)
                      +||--+.=.++++.|.+++.+.....++.||.++.+.++-..--.-|=|==|++ ..+|- +.+.-+ .-+-+|    ++
T Consensus       101 ~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~DavS~tTIGAGAvTyIVGPVTGaAiGA-sS~ViA-LSIA~GlvKai~  178 (254)
T TIGR00808       101 VKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRDAVSMTTIGAGAVTYIVGPVTGAAVGA-SSEVIA-LSIAIGLIKAIL  178 (254)
T ss_pred             HHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhheeeccceEEEEecCccchhccC-CcchHH-HHHHHhHHHHHh
Confidence            355556667899999999999999999999999988766543322221111121 22332 222222 233344    44


Q ss_pred             HHhhHHHHHhhcCcCCchhh---HhhhhhcchhhhhHH-hhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHH
Q 043501           77 GANFVQATLDKLRFRDPIAR---GIATASSAHGLGTAA-LSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQ  145 (152)
Q Consensus        77 G~~~g~~ll~~~~I~~~~a~---GlalG~~aHaiGTa~-a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~  145 (152)
                      -.+.-|++-|.++.|||++.   |=-+|++|   |++. +...|++--+|..+.-.+.-=+..++.  |.+.-
T Consensus       179 vMv~TP~~A~~igL~nPrsAmvfGGLmGT~S---GVaaGLAATD~kLVPYGAltATFyTglGCLl~--PSvlf  246 (254)
T TIGR00808       179 VMVGTPLLAKFMYLDNPRSAMVFGGLAGTTS---GVTAGLAATDVRLVPYGALTATFYTGLGCLLG--PSVLF  246 (254)
T ss_pred             heeccHHHHhhccCCCcchhheeccccccch---hhhccccccCcccccchhhHHHHHhcchHhhc--hHHHH
Confidence            55567888899999998875   33455555   4444 566788888888877666555555554  54433

The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=84.51  E-value=3.4  Score=35.49  Aligned_cols=124  Identities=15%  Similarity=0.219  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHH-HhCCChHHHHHHh--h-hhhhhHHHH-----HHH--HhhCCCchhHHHHHHHHHHHHHHhhHHHHH-
Q 043501           18 LFSLYSTALAGR-LVGLEPSLTVSIL--P-RCITVALAL-----SIV--SLFEGANSSLTAAVVVVTGLIGANFVQATL-   85 (152)
Q Consensus        18 ~~~~~~~~~l~~-~lgl~~~~~~Sl~--p-kSvTtpiAi-----~is--~~igG~~~slta~~vi~tGi~G~~~g~~ll-   85 (152)
                      .++++.+..+.. .++.++......-  . |=..+-|.+     .+.  .+.|.  ..+..  +++.=+....++.++- 
T Consensus        30 ~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~--~~~~~--~~~~v~~~~~~~~~lg~  105 (305)
T PF03601_consen   30 LIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGW--KGLLI--IIIVVILTFLLTYWLGR  105 (305)
T ss_pred             HHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCc--cHHHH--HHHHHHHHHHHHHHHHH
Confidence            556666666775 7777776544332  1 222222221     122  23433  23222  2222344566778888 


Q ss_pred             hhcCcCCchhh----HhhhhhcchhhhhHHhhhcCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043501           86 DKLRFRDPIAR----GIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSL  147 (152)
Q Consensus        86 ~~~~I~~~~a~----GlalG~~aHaiGTa~a~~~~~~~ga~aslam~l~gi~t~i~~~~P~~~~~l  147 (152)
                      |++|++++.+.    |.+.--+|-.+.++-..+-++|+-+++--...+.|.+..++  .|++.+++
T Consensus       106 r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~--~P~l~~~l  169 (305)
T PF03601_consen  106 RLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFL--YPLLGHAL  169 (305)
T ss_pred             HHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHH--HHHHHHHh
Confidence            99999986554    44444445556666677777888888888888899888776  58888875

; GO: 0016021 integral to membrane

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=83.25  E-value=19  Score=30.84  Aligned_cols=85  Identities=18%  Similarity=0.241  Sum_probs=65.4

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLE-PSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF   80 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~-~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~   80 (152)
                      +++||.+++...+.-...+...++++.|.-+.| .+-..+..|=..+.=+++.  |+.|+ |+..-+.+=.+==++-..+
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~TA~~~~~PGg~s~m~~la--~~~ga-d~~~Va~~q~lRl~~Vv~~  126 (318)
T PF05145_consen   50 LASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRATAFFASMPGGLSEMVALA--EEYGA-DTRRVALVQSLRLLLVVLL  126 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHcCCccHHHHHHHH--HHcCC-ChhhhHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999 6778899998888877655  88887 7876665433333334445


Q ss_pred             HHHHHhhcC
Q 043501           81 VQATLDKLR   89 (152)
Q Consensus        81 g~~ll~~~~   89 (152)
                      -|++.+++.
T Consensus       127 vP~i~~~~~  135 (318)
T PF05145_consen  127 VPFIASLLG  135 (318)
T ss_pred             HHHHHHHhh
Confidence            666666543

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK03818 putative transporter; Validated

Probab=82.69  E-value=14  Score=34.13  Aligned_cols=91  Identities=15%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHh-hC--C------CchhHHHHHHHH
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSL-FE--G------ANSSLTAAVVVV   72 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~-ig--G------~~~slta~~vi~   72 (152)
                      +||+-+....--++-++++...++.+.++|++|.....-.+.=+.|.+=|+.-+++ ++  +      .+|++.=..+..
T Consensus        86 l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~aa~~~~~~~~~~~~~~~~~a~gYa~~Yp  165 (552)
T PRK03818         86 LRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGAGQQILRDLGTPGDLVDQMGMGYAMAYP  165 (552)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccccccHHHHHHHHHHhccCCCccccCCcchhhHhHhH
Confidence            46653444333344455666678888999999999999999999999888876653 21  1      135555566677


Q ss_pred             HHHHHHhhHHHHH-hhcCcCC
Q 043501           73 TGLIGANFVQATL-DKLRFRD   92 (152)
Q Consensus        73 tGi~G~~~g~~ll-~~~~I~~   92 (152)
                      -|++|.++--.++ |++|+|.
T Consensus       166 ~g~i~~il~~~~~~~~~~~~~  186 (552)
T PRK03818        166 FGICGILLSMWLIRLIFRINV  186 (552)
T ss_pred             HHHHHHHHHHHHHHHHhCCCh
Confidence            7888888765543 4567764

>PRK04972 putative transporter; Provisional

Probab=82.10  E-value=15  Score=34.01  Aligned_cols=90  Identities=20%  Similarity=0.159  Sum_probs=59.6

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHHHHHHHHh-hCCC------------chhHHHH
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSILPRCITVALALSIVSL-FEGA------------NSSLTAA   68 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~-igG~------------~~slta~   68 (152)
                      +||+-+.....-++-++++...++.+.|+||+|.....-++.=+.|.+=++..+++ ++..            +++..=.
T Consensus        85 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~~~~~~~~~~~~~~~~~~~~~~vgYa  164 (558)
T PRK04972         85 FFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGAESRQLSLALDNLSLGYA  164 (558)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHHHHHHHhccCccccchhcccCccchhHH
Confidence            56664445545556666778888889999999999999999999998767666554 2211            1344445


Q ss_pred             HHHHHHHHHHhhHHHHH-hhcCcC
Q 043501           69 VVVVTGLIGANFVQATL-DKLRFR   91 (152)
Q Consensus        69 ~vi~tGi~G~~~g~~ll-~~~~I~   91 (152)
                      .+..-|++|.++--.++ +++|+|
T Consensus       165 ~~y~~g~i~~i~~~~~~p~l~rid  188 (558)
T PRK04972        165 LTYLIGLVSLIVGARYLPKLQHQD  188 (558)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCC
Confidence            55666777766544433 334544

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=81.57  E-value=25  Score=30.77  Aligned_cols=125  Identities=18%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHhhhhhhhHH---------HHHHHHhhCCCchh--HHHHHHHHHHHHHHhhHHHHHh
Q 043501           18 LFSLYSTALAGRLVGLEPSLTVSILPRCITVAL---------ALSIVSLFEGANSS--LTAAVVVVTGLIGANFVQATLD   86 (152)
Q Consensus        18 ~~~~~~~~~l~~~lgl~~~~~~Sl~pkSvTtpi---------Ai~is~~igG~~~s--lta~~vi~tGi~G~~~g~~ll~   86 (152)
                      +++.+.-.+++..+|==++-.+.++.|..+.-|         .|+..+.+.++-+.  |....+++||+.....-    |
T Consensus       171 lv~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~d----r  246 (314)
T TIGR00793       171 FVGAVLPFLVGFALGNLDPELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILAD----K  246 (314)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHH----H
Confidence            444444555555555444445566666554322         23444432222233  33555667777665433    3


Q ss_pred             hcCcCCchhhHhhhhh-cchhhhhHH-hhhcCCcchhHHHHHHHH---HHHHHHHHhhhHHHHHHHHH
Q 043501           87 KLRFRDPIARGIATAS-SAHGLGTAA-LSAKEPEALPFCAIAYAL---TGIFGSLICSVPAVRQSLLA  149 (152)
Q Consensus        87 ~~~I~~~~a~GlalG~-~aHaiGTa~-a~~~~~~~ga~aslam~l---~gi~t~i~~~~P~~~~~l~~  149 (152)
                      +++=++..+ |.|.|+ +..++.|-. ..|-|++-.+++..|-..   +-++|++++  |++..|..+
T Consensus       247 ~~~g~~g~a-G~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~--Pilta~~~k  311 (314)
T TIGR00793       247 FIGGGDGTA-GIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLV--PIATVWWSK  311 (314)
T ss_pred             HhcCCCCch-hhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            332145555 999995 455666666 445677777777777654   345667774  888887654

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=81.43  E-value=6.9  Score=35.56  Aligned_cols=74  Identities=15%  Similarity=0.153  Sum_probs=51.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChHHHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhhH
Q 043501            3 KRHAAEIFMSVILSTLFSLYSTAL-AGRLVGLEPSLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFV   81 (152)
Q Consensus         3 k~~~~~il~~~~~g~~~~~~~~~~-l~~~lgl~~~~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~g   81 (152)
                      |.-++++-+|...|++.+.+.... ..+++|-                      -.+|. ..+.+.+..++.+-+-..+.
T Consensus       352 ~vl~rE~~vG~~~G~vl~~~~~~~~~~~~~~~----------------------~~l~~-~v~~al~~~~~~A~l~G~~i  408 (451)
T COG2239         352 RVLLKELGVGLLLGLVLAIIIGLRVPAWLYGG----------------------LLLGL-IVALALLLNILFAALVGVLI  408 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------------chHHH-HHHHHHHHHHHHHHHhhchH
Confidence            456788889999999999777774 4444443                      23444 35556666666655556689


Q ss_pred             HHHHhhcCcCCchhhHhh
Q 043501           82 QATLDKLRFRDPIARGIA   99 (152)
Q Consensus        82 ~~ll~~~~I~~~~a~Gla   99 (152)
                      |.++|++|++-.++-|--
T Consensus       409 P~ll~kl~~DPAvaS~p~  426 (451)
T COG2239         409 PILLKKLGLDPAVASGPL  426 (451)
T ss_pred             HHHHHHcCCCchhhccch
Confidence            999999999876665543

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=81.22  E-value=28  Score=29.81  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=67.1

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHHhh
Q 043501            2 VKRHAAEIFMSVILSTLFSLYSTALAGRLVGLEPS-LTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANF   80 (152)
Q Consensus         2 lk~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~-~~~Sl~pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~~~   80 (152)
                      ++|++.+.+.....--..+...++.+.++.|.|.. ..+++.|=-++.=-.+  ++.+|. |+++.+.+=++==++=..+
T Consensus       229 ~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La~aPGGl~eM~l~--A~~l~~-d~~~V~~~q~~Rl~~v~~~  305 (318)
T PF05145_consen  229 LRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLATAPGGLAEMALI--ALALGA-DVAFVAAHQVVRLLFVLLL  305 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhCCccHHHHHHH--HHHcCC-ChHHHHHHHHHHHHHHHHH
Confidence            57888899999999999999999999999999875 6789999888875554  445666 7888777655555555677


Q ss_pred             HHHHHhhcC
Q 043501           81 VQATLDKLR   89 (152)
Q Consensus        81 g~~ll~~~~   89 (152)
                      .|++.|+++
T Consensus       306 ~p~~~r~~~  314 (318)
T PF05145_consen  306 APFIARWLR  314 (318)
T ss_pred             HHHHHHHHH
Confidence            888888763

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	95.08

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=95.08  E-value=0.19  Score=41.85  Aligned_cols=81  Identities=21%  Similarity=0.285  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-----hhhhhhHHHHHHHHhhCCCchhHHHHHHHHHHHHHH
Q 043501            4 RHAAEIFMSVILSTLFSLYSTALAGRLVGLEPSLTVSIL-----PRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGA   78 (152)
Q Consensus         4 ~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSvTtpiAi~is~~igG~~~slta~~vi~tGi~G~   78 (152)
                      |||+.+..++..--++--+.++.+++++++|+++...+.     |-..+.+   -.++..|| |.++++..+.++-+++.
T Consensus        70 ~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~---v~t~~a~G-d~~la~~~~~~stll~~  145 (332)
T 3zux_A           70 KHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASN---VMTYLARG-NVALSVAVTSVSTLTSP  145 (332)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHH---HHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHH---HHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            788889888888888888999999999999999765544     4444444   38888988 89999999999999999


Q ss_pred             hhHHHHHhhc
Q 043501           79 NFVQATLDKL   88 (152)
Q Consensus        79 ~~g~~ll~~~   88 (152)
                      +.-|.++.++
T Consensus       146 ~~~Pl~~~l~  155 (332)
T 3zux_A          146 LLTPAIFLML  155 (332)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998876

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00