Citrus Sinensis ID: 043514

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
LLKVGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLIGRVYRLISFEGNIK
Secondary Structure (PSIPRED)
ccEEcccccccEEEEEEEccccEEEEEEEEccHHHHHHcccccEEEEEEccccccccccccEEEEEccccccccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHEEEEEcccccEEEEEEcccHHHHHHHccccEEEEEEEcccccccccccEHEccccccEEEEEEEEEEEEHHHHcc
Coil and Loop (DISEMBL)
llkvgncqaaEAATVVIQHPGNKIERIYWSVSAneimnsnpghYVALLatsptlksenglpvkqllrpddtlLIGRVYRLISFEGNIK
Flexible Loop (DISEMBL)
llkvgncqaaeaatvviqhpgnKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVkqllrpddtlligRVYRlisfegnik
Low Complexity Region (SEG)
LLKVGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLIGRVYRLISFEGNIK
Disordered region (IsUnstruct)
******CQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLIGRVYRLISFE****
Disordered Region (DISOPRED)
**K*GNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVAL*****************LLRPDDTLLIGRVYRLISFEG*I*
Disordered Region (DISEMBL)
LLKVGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLIGRVYRLISFEGNIK
Disordered Region (DISPRO)
*LKVGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLIGRVYRLISFEGNIK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LLKVGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLIGRVYRLISFEGNIK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
224095029	184	predicted protein [Populus trichocarpa]	0.965	0.461	0.827	3e-35
255568627	146	conserved hypothetical protein [Ricinus	0.965	0.582	0.827	5e-35
359497315	180	PREDICTED: uncharacterized protein LOC10	0.965	0.472	0.816	1e-34
356511974	180	PREDICTED: uncharacterized protein LOC10	0.965	0.472	0.793	6e-34
449448206	183	PREDICTED: uncharacterized protein LOC10	0.965	0.464	0.829	1e-33
359806136	178	uncharacterized protein LOC100812463 [Gl	0.965	0.477	0.781	2e-33
357476507	168	hypothetical protein MTR_4g097220 [Medic	0.965	0.505	0.781	7e-33
15240787	182	uncharacterized protein [Arabidopsis tha	0.920	0.445	0.75	1e-29
297794211	180	hypothetical protein ARALYDRAFT_919939 [	0.920	0.45	0.726	9e-29
388513355	171	unknown [Lotus japonicus]	0.965	0.497	0.696	2e-27

>gi|224095029|ref|XP_002310335.1| predicted protein [Populus trichocarpa] gi|222853238|gb|EEE90785.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 80/87 (91%), Gaps = 2/87 (2%)

Query: 4  VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
          +GNCQAAEAATVVIQHPGNKIERIYWSVSA+EIMNSNPGHYVAL+ TSPT ++ENGLP+K
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAHEIMNSNPGHYVALVVTSPTTRTENGLPLK 60

Query: 64 Q--LLRPDDTLLIGRVYRLISFEGNIK 88
          Q  LLRPDDTLLIG VYRL+SFE  +K
Sbjct: 61 QLKLLRPDDTLLIGHVYRLVSFEDVLK 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568627|ref|XP_002525287.1| conserved hypothetical protein [Ricinus communis] gi|223535445|gb|EEF37115.1| conserved hypothetical protein [Ricinus communis]

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 80/87 (91%), Gaps = 2/87 (2%)

Query: 4  VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
          +GNCQAAEAATVVIQHPGNKIERIYWSVSA++IMNSNPGHYVA++  SPT K+ENGLPVK
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAHQIMNSNPGHYVAMVVPSPTTKTENGLPVK 60

Query: 64 Q--LLRPDDTLLIGRVYRLISFEGNIK 88
          Q  LLRPDDTLLIG+VYRLISFE  +K
Sbjct: 61 QLKLLRPDDTLLIGQVYRLISFEDVLK 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497315|ref|XP_002266324.2| PREDICTED: uncharacterized protein LOC100262782 [Vitis vinifera] gi|296080881|emb|CBI18811.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/87 (81%), Positives = 79/87 (90%), Gaps = 2/87 (2%)

Query: 4  VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
          +GNCQAAEAATVVIQHPGNKIERIYWSVSA+E+M SNPGHYVAL+ TSPT KSENG P+K
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAHEVMTSNPGHYVALVVTSPTAKSENGTPLK 60

Query: 64 Q--LLRPDDTLLIGRVYRLISFEGNIK 88
          Q  LLRPDDTLLIG+VYRL+SFE  +K
Sbjct: 61 QLKLLRPDDTLLIGQVYRLVSFEDVLK 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511974|ref|XP_003524696.1| PREDICTED: uncharacterized protein LOC100780653 [Glycine max]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 80/87 (91%), Gaps = 2/87 (2%)

Query: 4  VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
          +GNCQAAEAATVVIQHPGNKIER+YWS+SA+E+MNSNPGHYVAL+ +SPTLK+ENG P+K
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERVYWSLSAHEVMNSNPGHYVALVVSSPTLKAENGAPMK 60

Query: 64 Q--LLRPDDTLLIGRVYRLISFEGNIK 88
          Q  LLRPDDTL IG+VYRLISFE  +K
Sbjct: 61 QLKLLRPDDTLHIGQVYRLISFEDVLK 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448206|ref|XP_004141857.1| PREDICTED: uncharacterized protein LOC101222947 [Cucumis sativus] gi|449499848|ref|XP_004160933.1| PREDICTED: uncharacterized protein LOC101226371 [Cucumis sativus]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 79/88 (89%), Gaps = 3/88 (3%)

Query: 4  VGNCQAAEAATVVIQHPGN-KIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPV 62
          +GNCQAAEAATVVIQHPGN KIERIYWSVSA+EIMNSNPGHYVALL TS T+KSENG P+
Sbjct: 1  MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLITSSTMKSENGTPI 60

Query: 63 KQ--LLRPDDTLLIGRVYRLISFEGNIK 88
          KQ  LLRPDDTLLIG VYRLI+FE  +K
Sbjct: 61 KQLKLLRPDDTLLIGHVYRLITFEDVLK 88

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806136|ref|NP_001241193.1| uncharacterized protein LOC100812463 [Glycine max] gi|255641057|gb|ACU20808.1| unknown [Glycine max]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 79/87 (90%), Gaps = 2/87 (2%)

Query: 4  VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
          +GNCQAAEAATVVIQHPGNKIER+YWS+SA+E+MNSNPGHYVAL+ +SPTL +ENG P+K
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERVYWSLSAHEVMNSNPGHYVALVVSSPTLMAENGTPMK 60

Query: 64 Q--LLRPDDTLLIGRVYRLISFEGNIK 88
          Q  LLRPDDTL IG+VYRLISFE  +K
Sbjct: 61 QLKLLRPDDTLHIGQVYRLISFEDVLK 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476507|ref|XP_003608539.1| hypothetical protein MTR_4g097220 [Medicago truncatula] gi|355509594|gb|AES90736.1| hypothetical protein MTR_4g097220 [Medicago truncatula] gi|388515023|gb|AFK45573.1| unknown [Medicago truncatula]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 79/87 (90%), Gaps = 2/87 (2%)

Query: 4  VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
          +GNCQAAE ATVVI  PGNK+ERIYWSVSA+E+MNSNPGHYVAL+ +SPTLKSENG+P+K
Sbjct: 1  MGNCQAAELATVVIHRPGNKVERIYWSVSAHEVMNSNPGHYVALVVSSPTLKSENGMPLK 60

Query: 64 --QLLRPDDTLLIGRVYRLISFEGNIK 88
            +LLRPDDTLLIG+VYRLISFE  +K
Sbjct: 61 HLKLLRPDDTLLIGQVYRLISFEDVLK 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240787|ref|NP_201563.1| uncharacterized protein [Arabidopsis thaliana] gi|9757883|dbj|BAB08470.1| unnamed protein product [Arabidopsis thaliana] gi|32815941|gb|AAP88355.1| At5g67620 [Arabidopsis thaliana] gi|110736456|dbj|BAF00196.1| hypothetical protein [Arabidopsis thaliana] gi|332010985|gb|AED98368.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/84 (75%), Positives = 75/84 (89%), Gaps = 3/84 (3%)

Query: 4  VGNCQAAEAATVVIQHPG-NKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPV 62
          +GNCQAAEAATV+I HP  NK+ERIYWSV+A++IM SNPGHYVA++ TSPT+K+E GLP+
Sbjct: 1  MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 60

Query: 63 KQ--LLRPDDTLLIGRVYRLISFE 84
          KQ  LLRPDDTLLIG VYRL+SFE
Sbjct: 61 KQLKLLRPDDTLLIGHVYRLVSFE 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794211|ref|XP_002864990.1| hypothetical protein ARALYDRAFT_919939 [Arabidopsis lyrata subsp. lyrata] gi|297310825|gb|EFH41249.1| hypothetical protein ARALYDRAFT_919939 [Arabidopsis lyrata subsp. lyrata]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 74/84 (88%), Gaps = 3/84 (3%)

Query: 4  VGNCQAAEAATVVIQHPG-NKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPV 62
          +GNCQAAEAATV+I HP  NK+ERIYWSV+A+++M SNPGHYVA++ TSPT+K+E G P+
Sbjct: 1  MGNCQAAEAATVLIHHPAENKVERIYWSVTASDVMKSNPGHYVAVVVTSPTMKNEKGSPL 60

Query: 63 KQ--LLRPDDTLLIGRVYRLISFE 84
          KQ  LLRPDDTLLIG VYRL+SFE
Sbjct: 61 KQLKLLRPDDTLLIGHVYRLVSFE 84

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513355|gb|AFK44739.1| unknown [Lotus japonicus]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 73/89 (82%), Gaps = 4/89 (4%)

Query: 4  VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
          +GNCQAAEAATVVIQHPGNKIERIYWS+SAN++MN NPGHYVAL+  S    + NG P+ 
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERIYWSLSANQVMNLNPGHYVALVLMSSENNNNNGTPLN 60

Query: 64 ----QLLRPDDTLLIGRVYRLISFEGNIK 88
              +LLRP+DTLLIG+VYRLISFE  +K
Sbjct: 61 SKHLKLLRPEDTLLIGQVYRLISFEDVLK 89

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2158651	182	AT5G67620 "AT5G67620" [Arabido	0.920	0.445	0.75	6.2e-30
TAIR|locus:2170693	161	AT5G62900 "AT5G62900" [Arabido	0.954	0.521	0.540	6.7e-17
TAIR|locus:2170116	159	AT5G50090 "AT5G50090" [Arabido	0.897	0.496	0.488	4.2e-15
TAIR|locus:2202690	173	AT1G60010 "AT1G60010" [Arabido	0.954	0.485	0.45	2.7e-13
TAIR|locus:2194616	166	AT1G10530 "AT1G10530" [Arabido	0.954	0.506	0.392	6.4e-12

TAIR|locus:2158651 AT5G67620 "AT5G67620" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/84 (75%), Positives = 75/84 (89%)

Query:     4 VGNCQAAEAATVVIQHPG-NKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPV 62
             +GNCQAAEAATV+I HP  NK+ERIYWSV+A++IM SNPGHYVA++ TSPT+K+E GLP+
Sbjct:     1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 60

Query:    63 KQL--LRPDDTLLIGRVYRLISFE 84
             KQL  LRPDDTLLIG VYRL+SFE
Sbjct:    61 KQLKLLRPDDTLLIGHVYRLVSFE 84

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IDA

TAIR|locus:2170693 AT5G62900 "AT5G62900" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 47/87 (54%), Positives = 60/87 (68%)

Query:     4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
             +GNCQAAEAAT VIQ P  K  R Y +V+A+E++ S+PGH+VALL +S  +     L V 
Sbjct:     1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSS-AVPHGGSLRVT 59

Query:    64 Q--LLRPDDTLLIGRVYRLISFEGNIK 88
             +  LLRP D LL+G VYRLIS E  +K
Sbjct:    60 RIKLLRPSDNLLLGHVYRLISSEEVMK 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2170116 AT5G50090 "AT5G50090" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query:     4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSEN---GL 60
             +GNCQA + A VVIQHP  K E++   VSA+ +M  NPGH V+LL ++  L S +   G 
Sbjct:     1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGG 60

Query:    61 PVK----QLLRPDDTLLIGRVYRLIS 82
             P++    +LLRP DTL++G VYRLI+
Sbjct:    61 PLRLTRIKLLRPTDTLVLGHVYRLIT 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2202690 AT1G60010 "AT1G60010" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 45/100 (45%), Positives = 61/100 (61%)

Query:     4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALL---------ATSPTL 54
             +GNCQA +AA +V+QHP  KI+R Y  VS +EIM   PGHYV+L+         AT+ T 
Sbjct:     1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTTTT 60

Query:    55 --KSENGLP----VKQLLRPDDTLLIGRVYRLISFEGNIK 88
               KSE  +     VK LLRP + L++G  YRLI+ +  +K
Sbjct:    61 DDKSERKVVRFTRVK-LLRPTENLVLGHAYRLITSQEVMK 99

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2194616 AT1G10530 "AT1G10530" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 40/102 (39%), Positives = 55/102 (53%)

Query:     4 VGNCQAAEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVK 63
             +GNCQA  AA +V+QHPG  I+R Y SVS  E+M   PGHYV+L+      + E  +P  
Sbjct:     1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIPLSE-EEEKNIPAT 59

Query:    64 -----------------QLLRPDDTLLIGRVYRLISFEGNIK 88
                              QLLRP + L++G  YRLI+ +  +K
Sbjct:    60 EKGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMK 101


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.49    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  103 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.47u 0.08s 10.55t   Elapsed:  00:00:01
  Total cpu time:  10.47u 0.08s 10.55t   Elapsed:  00:00:01
  Start:  Fri May 10 06:02:56 2013   End:  Fri May 10 06:02:57 2013

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0019037401 hypothetical protein (184 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam14009	181	pfam14009, DUF4228, Domain of unknown function (DU	3e-20

>gnl|CDD|222492 pfam14009, DUF4228, Domain of unknown function (DUF4228)

 Score = 79.3 bits (196), Expect = 3e-20
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 5  GNCQA------AEAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSEN 58
          GNC +        AATV + HP  K+      V+A E+M   PGH+V    +    +   
Sbjct: 2  GNCLSCCLAPSGAAATVKVVHPDGKVREYSRPVTAAELMLEYPGHFVCDSDSLYIGR--- 58

Query: 59 GLPVKQLLRPDDTLLIGRVYRLISFE 84
                 L PDD L  G++Y L+  E
Sbjct: 59 ---RIPALPPDDELERGQLYFLLPAE 81

This domain is found in plants. The function is not known. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF14009	181	DUF4228: Domain of unknown function (DUF4228)	99.94

>PF14009 DUF4228: Domain of unknown function (DUF4228)

Probab=99.94  E-value=1.9e-27  Score=163.09  Aligned_cols=78  Identities=35%  Similarity=0.517  Sum_probs=65.9

Q ss_pred             ccchhhh------hheeeeEEcCCCeeEEEeecccHhHHHhhCCCceEEeeecCcCccCCCCcceEEeeCCCCcccCCcE
Q 043514            4 VGNCQAA------EAATVVIQHPGNKIERIYWSVSANEIMNSNPGHYVALLATSPTLKSENGLPVKQLLRPDDTLLIGRV   77 (88)
Q Consensus         4 MGNCqA~------d~a~vvI~Hp~Gkve~~y~~vsA~eVM~~nPGHyVa~~~~~~~~~~~~~~~~~klL~Pdd~L~~G~~   77 (88)
                      ||||.+.      +..+++|+|+||+|++|++|++|+|||..||||||...-.     ... -+..+.|+|||+|++|++
T Consensus         1 MGn~~~~~~~~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~-----~~~-~~~~~~l~~d~~L~~G~~   74 (181)
T PF14009_consen    1 MGNCVSCCLASSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDS-----FRF-GRRIKPLPPDEELQPGQI   74 (181)
T ss_pred             CCCcccccccccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEecccc-----ccC-CCcccCCCccCeecCCCE
Confidence            9999987      8889999999999999999999999999999999964311     001 222379999999999999


Q ss_pred             EEEEeccccc
Q 043514           78 YRLISFEGNI   87 (88)
Q Consensus        78 YrLI~~~ev~   87 (88)
                      |||+|.+.+.
T Consensus        75 Y~llP~~~~~   84 (181)
T PF14009_consen   75 YFLLPMSRLQ   84 (181)
T ss_pred             EEEEEccccC
Confidence            9999997653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00