Citrus Sinensis ID: 043787
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | 2.2.26 [Sep-21-2011] | |||||||
| Q112K0 | 595 | Aspartate--tRNA ligase OS | yes | no | 0.944 | 0.717 | 0.597 | 1e-155 | |
| Q3MGL3 | 614 | Aspartate--tRNA ligase OS | yes | no | 0.940 | 0.692 | 0.591 | 1e-154 | |
| Q8YUB6 | 595 | Aspartate--tRNA ligase OS | yes | no | 0.940 | 0.714 | 0.588 | 1e-154 | |
| B8HXQ8 | 597 | Aspartate--tRNA ligase OS | yes | no | 0.944 | 0.715 | 0.593 | 1e-153 | |
| B2J116 | 595 | Aspartate--tRNA ligase OS | yes | no | 0.940 | 0.714 | 0.586 | 1e-153 | |
| Q31NM6 | 599 | Aspartate--tRNA ligase OS | yes | no | 0.944 | 0.712 | 0.590 | 1e-152 | |
| Q5N5I8 | 599 | Aspartate--tRNA ligase OS | yes | no | 0.944 | 0.712 | 0.590 | 1e-152 | |
| B7JX16 | 598 | Aspartate--tRNA ligase OS | yes | no | 0.940 | 0.710 | 0.581 | 1e-150 | |
| B7KB89 | 595 | Aspartate--tRNA ligase OS | yes | no | 0.940 | 0.714 | 0.570 | 1e-150 | |
| B1XNY9 | 596 | Aspartate--tRNA ligase OS | yes | no | 0.940 | 0.713 | 0.578 | 1e-149 |
| >sp|Q112K0|SYD_TRIEI Aspartate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) GN=aspS PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 547 bits (1410), Expect = e-155, Method: Compositional matrix adjust.
Identities = 257/430 (59%), Positives = 338/430 (78%), Gaps = 3/430 (0%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
+ TG IE+ + +Q+LN + +LPF V+TA+ + V+EE+RL+YR LDLRR++M N+L
Sbjct: 88 LPTGEIEIYADDIQLLNGLGKQLPFQVSTAE--TEAVREELRLKYRYLDLRRERMTRNLL 145
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH+V+K IRR+LED FVEIETP+L+RSTPEGARDYLVPSRV PG ++ALPQSPQLFK
Sbjct: 146 LRHEVIKAIRRFLEDEQNFVEIETPILTRSTPEGARDYLVPSRVHPGEWFALPQSPQLFK 205
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMVSGFD+YYQIARCFRDEDLRADRQPEFTQLDME++F +++L+LNE L+ IF +
Sbjct: 206 QILMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSQEEILQLNEKLVAYIFQK 265
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+K + LP PFPRLTY EAM RYGSD+PD RF L+L DVSD+ +S F+VFS ++ GGI+
Sbjct: 266 VKGIDLPLPFPRLTYTEAMERYGSDKPDVRFGLELVDVSDLMKDSGFKVFSGAIAKGGIV 325
Query: 241 KVLCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSN 299
KVL +P G SN +K GD++ EA + GAKGL +++V + G ++ I A+ +L
Sbjct: 326 KVLPIPGGNDAISNVRIKPGGDLFKEASEVGAKGLAYVRVKEGGKIDTIGAIKDNLTDEQ 385
Query: 300 KEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMF 359
K++LL R +A P L+LFA +VNKTLDRLR + +LGLID K S+LW+TDFPMF
Sbjct: 386 KQELLKRTNAQPGHLLLFAADDANTVNKTLDRLRLVIGEQLGLIDQDKISLLWVTDFPMF 445
Query: 360 EWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKV 419
EWN+ EQRLEALHHPFTAP+P+D++DL +ARA AYD+V+NG E+GGGSLRIY+R+VQ+KV
Sbjct: 446 EWNEDEQRLEALHHPFTAPHPDDINDLKTARAQAYDLVFNGYEVGGGSLRIYQRDVQEKV 505
Query: 420 LEIVGISPEQ 429
E +G+S ++
Sbjct: 506 FEAIGLSAQE 515
|
Trichodesmium erythraeum (strain IMS101) (taxid: 203124) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2 |
| >sp|Q3MGL3|SYD_ANAVT Aspartate--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 253/428 (59%), Positives = 339/428 (79%), Gaps = 3/428 (0%)
Query: 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
TG +E+ + +++LN VR +LPF V+TAD + V+E++RL+YR LDLRR +M NI LR
Sbjct: 109 TGEVEIYADKIELLNGVRKQLPFQVSTAD--TETVREDLRLKYRYLDLRRDRMARNIQLR 166
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
H+VVK +RRYLEDV GF+E+ETP+L+RSTPEGARDY++PSRV PG ++ALPQSPQLFKQ+
Sbjct: 167 HQVVKAMRRYLEDVEGFIEVETPILTRSTPEGARDYVLPSRVNPGEWFALPQSPQLFKQI 226
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182
LMVSG D+YYQIARCFRDEDLRADRQPEFTQLDME++F +++++LNE L+ IF +K
Sbjct: 227 LMVSGMDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSEEEIIQLNEKLVSYIFKTVK 286
Query: 183 DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKV 242
V+LP PFPRLTYAEAM RYG D+PDTR+ LQL +VSD+ +S F+VF D++ +GGI+K+
Sbjct: 287 GVELPLPFPRLTYAEAMERYGCDKPDTRYDLQLVNVSDVMKDSGFKVFRDAVANGGIVKI 346
Query: 243 LCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKE 301
L +P+G + SN +K GD++ EA ++GAKGL +++V + G ++ I A+ +L K+
Sbjct: 347 LPIPNGNEQISNVRIKPGGDLFREASEAGAKGLAYIRVREDGEIDTIGAIKDNLSEEQKQ 406
Query: 302 QLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEW 361
++L R A P L+LF G A+VNKTLDRLR +A E GLID K ++LW+ DFPMFEW
Sbjct: 407 EILQRTGAKPGHLLLFGAGDAATVNKTLDRLRQAIAKEFGLIDPDKINLLWVVDFPMFEW 466
Query: 362 NDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE 421
N E+RLEALHHPFTAP+P+D+ DL +ARA AYD+V+NG E+GGGS RIY+REVQ++V E
Sbjct: 467 NADEKRLEALHHPFTAPHPDDLHDLKTARAQAYDLVFNGFEVGGGSRRIYQREVQEQVFE 526
Query: 422 IVGISPEQ 429
+G+SPE+
Sbjct: 527 TIGLSPEE 534
|
Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q8YUB6|SYD_NOSS1 Aspartate--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 252/428 (58%), Positives = 337/428 (78%), Gaps = 3/428 (0%)
Query: 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
TG +E+ + +++LN VR +LPF V+TAD + V+E++RL+YR LDLRR +M NI LR
Sbjct: 90 TGEVEIYADKIELLNGVRKQLPFQVSTAD--TETVREDLRLKYRYLDLRRDRMARNIQLR 147
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
H+VVK +RRYLEDV GF+E+ETP+L+RSTPEGARDY++PSRV PG ++ALPQSPQLFKQ+
Sbjct: 148 HQVVKAMRRYLEDVEGFIEVETPILTRSTPEGARDYVLPSRVNPGEWFALPQSPQLFKQI 207
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182
LMVSG D+YYQIARCFRDEDLRADRQPEFTQLDME++F ++++ LNE L+ IF +K
Sbjct: 208 LMVSGLDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSEEEIIELNEKLVSYIFKTVK 267
Query: 183 DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKV 242
V+LP PFPRLTYAEAM RYG D+PDTR+ LQL +VSD+ +S F+VF D++ +GGI+K+
Sbjct: 268 GVELPLPFPRLTYAEAMERYGCDKPDTRYDLQLVNVSDVMKDSGFKVFRDAVANGGIVKI 327
Query: 243 LCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKE 301
L +P+G + SN +K GD++ EA ++GAKGL +++V + G ++ I A+ +L K+
Sbjct: 328 LPIPNGNEQISNVRIKPGGDLFREASEAGAKGLAYIRVREDGEIDTIGAIKDNLSEEQKQ 387
Query: 302 QLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEW 361
++L R A P L+LF G +VNKTLDRLR +A E GLID K ++LW+ DFPMFEW
Sbjct: 388 EILQRTGAKPGHLLLFGAGDAVTVNKTLDRLRQAIAKEFGLIDPDKINLLWVVDFPMFEW 447
Query: 362 NDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE 421
N E+RLEALHHPFTAP+P+D+ DL +ARA AYD+V+NG E+GGGS RIY+REVQ++V E
Sbjct: 448 NADEKRLEALHHPFTAPHPDDLHDLKTARAQAYDLVFNGFEVGGGSRRIYQREVQEQVFE 507
Query: 422 IVGISPEQ 429
+G+SPE+
Sbjct: 508 TIGLSPEE 515
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|B8HXQ8|SYD_CYAP4 Aspartate--tRNA ligase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/430 (59%), Positives = 336/430 (78%), Gaps = 3/430 (0%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
+ TG +E+ + +++LNAVR +LPF V+T + + V+E++RL+YR LDLRR+ M N+
Sbjct: 88 LPTGEVEIYADQIELLNAVRKQLPFQVSTTE--SESVREDLRLKYRYLDLRRETMAANLQ 145
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH+VVK +RRYLED FVEIETPVL+RSTPEGARDYLVPSRV PG ++ALPQSPQLFK
Sbjct: 146 LRHQVVKAMRRYLEDEQNFVEIETPVLTRSTPEGARDYLVPSRVNPGEWFALPQSPQLFK 205
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMV+G+D+YYQIARCFRDEDLRADRQPEFTQLDME++F +++L LNE L+ IF +
Sbjct: 206 QLLMVAGYDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSQEEILELNEALVCHIFKQ 265
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+K ++LP PFPRLTYAEAM RYGSD+PDTRF L+L +VSD+ +S F+VFS ++ SGG++
Sbjct: 266 VKGIELPRPFPRLTYAEAMDRYGSDKPDTRFGLELVNVSDLMKDSGFKVFSGAVASGGLV 325
Query: 241 KVLCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSN 299
KVL +P+G SN +K GD++ EA +GAKGL +++V + G ++ I A+ +L +
Sbjct: 326 KVLPIPNGNDLISNVRIKPGGDLFKEATDAGAKGLAYIRVREGGEIDTIGAIKDNLTEAQ 385
Query: 300 KEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMF 359
K +LL R A P L+LF G A VNKTLDRLR + EL LID +K ++LWI +FPMF
Sbjct: 386 KAELLQRTGAKPGHLLLFGAGTAAIVNKTLDRLRQVLGRELNLIDPAKINLLWIVEFPMF 445
Query: 360 EWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKV 419
EWN E+RLEALHHPFTAP PED+ DL +A+A AYD+VYNG E+GGGSLRIY+ E+Q++V
Sbjct: 446 EWNADEKRLEALHHPFTAPYPEDVQDLKTAQAQAYDLVYNGFEVGGGSLRIYQTELQKQV 505
Query: 420 LEIVGISPEQ 429
E +G+SPE+
Sbjct: 506 FETIGLSPEE 515
|
Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|B2J116|SYD_NOSP7 Aspartate--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 251/428 (58%), Positives = 335/428 (78%), Gaps = 3/428 (0%)
Query: 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
TG +E+ + +++LNAV +LPF V+ AD + V+E++RL+YR LDLRR++M N+ LR
Sbjct: 90 TGEVEIYADKIKLLNAVGKQLPFQVSVAD--TETVREDLRLKYRYLDLRRERMAQNLQLR 147
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
H++VK +RRYLED+ GF+E+ETP+L+RSTPEGARDY++PSRV PG +YALPQSPQLFKQ+
Sbjct: 148 HQIVKAMRRYLEDLEGFIEVETPILTRSTPEGARDYVLPSRVNPGEWYALPQSPQLFKQL 207
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182
LMVSG D+YYQIARCFRDEDLRADRQPEFTQLDME++F ++++ LNE L+ IF +K
Sbjct: 208 LMVSGLDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSQEEIIELNESLVCHIFKTVK 267
Query: 183 DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKV 242
++L PF RLTYAE M RYGSD+PDTR+ L+L DVSDI +S F+VF D++ +GGI+K+
Sbjct: 268 GIELQRPFLRLTYAEGMERYGSDKPDTRYGLELVDVSDIVKDSGFKVFRDTVTNGGIVKI 327
Query: 243 LCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKE 301
L +P+G SN +K GD++ EA ++GAKGL +++V D G ++ I A+ +L K+
Sbjct: 328 LPIPNGNDVISNVRIKPGGDLFKEASEAGAKGLAYIRVRDDGEIDTIGAIKDNLSEEQKQ 387
Query: 302 QLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEW 361
++L R A L+LF G A+VNKTLDRLR +A E LID K ++LWITDFPMFEW
Sbjct: 388 EILRRTGAKAGHLLLFGAGEAATVNKTLDRLRQAIAREFNLIDPDKINLLWITDFPMFEW 447
Query: 362 NDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE 421
N E+RLEALHHPFTAP+P+D+ DL +ARA AYD+V NGVE+GGGSLRIY+RE+QQ+V E
Sbjct: 448 NADEKRLEALHHPFTAPHPDDLSDLKTARAQAYDLVLNGVEVGGGSLRIYQREIQQQVFE 507
Query: 422 IVGISPEQ 429
+G+SPE+
Sbjct: 508 AIGLSPEE 515
|
Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q31NM6|SYD_SYNE7 Aspartate--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/430 (59%), Positives = 335/430 (77%), Gaps = 3/430 (0%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
+ TG +E+ + +++LNAVR +LPF V++AD+ + V+E++RLRYR LDLRR +MN N+
Sbjct: 88 LPTGEVEIYADRIEILNAVRRQLPFQVSSADE--ETVREDLRLRYRYLDLRRDRMNRNLQ 145
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH+VVK IRR+LED F+EIETPVL++STPEGARDYLVPSRV PG ++ALPQSPQLFK
Sbjct: 146 LRHQVVKAIRRFLEDEEQFIEIETPVLTKSTPEGARDYLVPSRVNPGEWFALPQSPQLFK 205
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMVSGFD+YYQIARCFRDEDLRADRQPEFTQLDME++F ++++ LNE LI IF
Sbjct: 206 QLLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFLSQEEIIDLNERLIAHIFKT 265
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+K ++LP PFPRLTYAEAM RYGSDRPDTRF L+L DVSD+ + F+VFS ++KSGG +
Sbjct: 266 VKGIELPRPFPRLTYAEAMDRYGSDRPDTRFGLELVDVSDVVADMGFKVFSGAVKSGGKV 325
Query: 241 KVLCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSN 299
K+L +P G SN +K GDI+ EA ++GA GL +++V + G ++ I A+ +L
Sbjct: 326 KILPIPDGNDRISNVRIKPGGDIFKEATEAGAAGLAYIRVRENGEIDTIGAIKDNLSDEQ 385
Query: 300 KEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMF 359
K ++L R A P L+LF G VNK+LDR+R F+ ELGLID ++LW+ DFPM
Sbjct: 386 KAEILRRTQAQPGTLLLFGAGSTDIVNKSLDRVRQFLGKELGLIDPEALNLLWVVDFPMV 445
Query: 360 EWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKV 419
EWN E+R EALHHPFTAPNP+D++DL++ARA AYD+V NG+EIGGGSLRIY+R++Q++V
Sbjct: 446 EWNADEKRYEALHHPFTAPNPQDLEDLTTARAQAYDIVLNGLEIGGGSLRIYQRDIQERV 505
Query: 420 LEIVGISPEQ 429
E +G+S E+
Sbjct: 506 FETIGLSHEE 515
|
Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q5N5I8|SYD_SYNP6 Aspartate--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/430 (59%), Positives = 335/430 (77%), Gaps = 3/430 (0%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
+ TG +E+ + +++LNAVR +LPF V++AD+ + V+E++RLRYR LDLRR +MN N+
Sbjct: 88 LPTGEVEIYADRIEILNAVRRQLPFQVSSADE--ETVREDLRLRYRYLDLRRDRMNRNLQ 145
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH+VVK IRR+LED F+EIETPVL++STPEGARDYLVPSRV PG ++ALPQSPQLFK
Sbjct: 146 LRHQVVKAIRRFLEDEEQFIEIETPVLTKSTPEGARDYLVPSRVNPGEWFALPQSPQLFK 205
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMVSGFD+YYQIARCFRDEDLRADRQPEFTQLDME++F ++++ LNE LI IF
Sbjct: 206 QLLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFLSQEEIIDLNERLIAHIFKT 265
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+K ++LP PFPRLTYAEAM RYGSDRPDTRF L+L DVSD+ + F+VFS ++KSGG +
Sbjct: 266 VKGIELPRPFPRLTYAEAMDRYGSDRPDTRFGLKLVDVSDVVADMGFKVFSGAVKSGGKV 325
Query: 241 KVLCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSN 299
K+L +P G SN +K GDI+ EA ++GA GL +++V + G ++ I A+ +L
Sbjct: 326 KILPIPDGNDRISNVRIKPGGDIFKEATEAGAAGLAYIRVRENGEIDTIGAIKDNLSDEQ 385
Query: 300 KEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMF 359
K ++L R A P L+LF G VNK+LDR+R F+ ELGLID ++LW+ DFPM
Sbjct: 386 KAEILRRTQAQPGTLLLFGAGSTDIVNKSLDRVRQFLGKELGLIDPEALNLLWVVDFPMV 445
Query: 360 EWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKV 419
EWN E+R EALHHPFTAPNP+D++DL++ARA AYD+V NG+EIGGGSLRIY+R++Q++V
Sbjct: 446 EWNADEKRYEALHHPFTAPNPQDLEDLTTARAQAYDIVLNGLEIGGGSLRIYQRDIQERV 505
Query: 420 LEIVGISPEQ 429
E +G+S E+
Sbjct: 506 FETIGLSHEE 515
|
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|B7JX16|SYD_CYAP8 Aspartate--tRNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/428 (58%), Positives = 333/428 (77%), Gaps = 3/428 (0%)
Query: 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
TG +E+ +++LN V +LPF++++ + + V+E++RL+YR LDLRR +M N+ LR
Sbjct: 90 TGEVEIYANSIELLNGVNKQLPFVISSLE--AELVREDVRLKYRYLDLRRDRMAKNLQLR 147
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
H VVK +RRYLED F+EIETP+L+RSTPEGARDYLVPSR PG +YALPQSPQLFKQ+
Sbjct: 148 HAVVKAMRRYLEDEQQFMEIETPILTRSTPEGARDYLVPSRANPGQWYALPQSPQLFKQL 207
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182
LMV+G D+YYQIARCFRDEDLRADRQPEFTQLDME++F +++LRLNE L+ IF +K
Sbjct: 208 LMVAGCDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSEEEILRLNEGLVCHIFKSVK 267
Query: 183 DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKV 242
++ +P PFPRLTYA+AM +YG+DRPDTRF L+L DVSDI +S F+VFS+++K+GG +K+
Sbjct: 268 NLDIPRPFPRLTYAKAMEKYGNDRPDTRFGLELVDVSDIVKDSGFKVFSEAVKTGGKVKI 327
Query: 243 LCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKE 301
L VP G +T SN +K GD++ EA ++GAKG+ +++V + ++ I A+ +L K
Sbjct: 328 LPVPGGNETISNVRIKPGGDLFREATEAGAKGIAYIRVKEDNKLDTIGAIKDNLTEDQKL 387
Query: 302 QLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEW 361
+LL R A DL+LF G +VNK+L RLR + +LGLID K ++LWIT+FPMFEW
Sbjct: 388 ELLARTGAKSGDLLLFGAGDTDTVNKSLSRLRLVIGEQLGLIDPEKINLLWITEFPMFEW 447
Query: 362 NDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE 421
N E+RLEALHHPFTAPNPED+DDL +ARA AYD+VYNGVE+GGGSLRIY+++VQ+KV
Sbjct: 448 NADEKRLEALHHPFTAPNPEDLDDLKTARAQAYDLVYNGVEVGGGSLRIYQKDVQEKVFA 507
Query: 422 IVGISPEQ 429
+G+S E+
Sbjct: 508 TIGLSMEE 515
|
Cyanothece sp. (strain PCC 8801) (taxid: 41431) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|B7KB89|SYD_CYAP7 Aspartate--tRNA ligase OS=Cyanothece sp. (strain PCC 7424) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 244/428 (57%), Positives = 329/428 (76%), Gaps = 3/428 (0%)
Query: 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
TG +E+ + +++LN V +LPF++++ D + V+EE+RL+YR LDLRR +M N+ LR
Sbjct: 90 TGEVEIYADSIEILNGVNKQLPFVISSED--AELVREEVRLKYRYLDLRRDRMRKNLQLR 147
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
H+VV+ +RRYLED F+E+ETP+L+RSTPEGARDYLVPSR PG +YALPQSPQLFKQ+
Sbjct: 148 HQVVQAMRRYLEDQQNFMEVETPILTRSTPEGARDYLVPSRTNPGKWYALPQSPQLFKQL 207
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182
LMVSG D+YYQIARCFRDED RADRQPEFTQLDME++F D++L LNE LI +F +K
Sbjct: 208 LMVSGVDRYYQIARCFRDEDNRADRQPEFTQLDMEMSFMSFDEILDLNEGLIAHVFKTVK 267
Query: 183 DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKV 242
++ +P PFPRLTYAEAM +YG DRPDTRF L+L DVS+I +S F+VFS ++KSGGI+KV
Sbjct: 268 NIDIPRPFPRLTYAEAMEKYGIDRPDTRFGLELVDVSEIVKDSGFKVFSGAVKSGGIVKV 327
Query: 243 LCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKE 301
L +P SN +K G+++ EA ++GAKG+ ++++ D ++ I A+ +L K+
Sbjct: 328 LPIPEATNIISNVQIKPGGELFKEATEAGAKGIAYIRIKDNNELDTIAAIKDNLTDEQKQ 387
Query: 302 QLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEW 361
+L+ + A P L+LF G +VNK+L RLR V +LGLID K ++LW+TDFPMFEW
Sbjct: 388 ELIEKTGAKPGHLLLFGAGDTDTVNKSLARLRLVVGEKLGLIDEDKINLLWVTDFPMFEW 447
Query: 362 NDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE 421
N E+RLEALHHPFTAP PED++DL ARALAYDM++NG+E+GGGSLRIY+R++Q+KV
Sbjct: 448 NAEEKRLEALHHPFTAPKPEDINDLPHARALAYDMIFNGIELGGGSLRIYQRDIQEKVFS 507
Query: 422 IVGISPEQ 429
+G+S E+
Sbjct: 508 TIGLSMEE 515
|
Cyanothece sp. (strain PCC 7424) (taxid: 65393) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|B1XNY9|SYD_SYNP2 Aspartate--tRNA ligase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/427 (57%), Positives = 333/427 (77%), Gaps = 2/427 (0%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
+ TG +E+ + +++LN V +LP LV+++ D D VKE++RL+YR LDLRR+ M N+
Sbjct: 88 LPTGEVEIYADTIEILNGVHKQLPILVSSSADG-DQVKEDLRLKYRYLDLRRETMAKNLQ 146
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH VVK +RR+LED F+E+ETP+L+RSTPEGARDYLVPSRV PG +YALPQSPQLFK
Sbjct: 147 LRHTVVKSMRRFLEDDENFMEVETPILTRSTPEGARDYLVPSRVNPGDWYALPQSPQLFK 206
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMV+G D+YYQIARCFRDEDLRADRQPEFTQLDME++F D+++ LNE LI +IF +
Sbjct: 207 QLLMVAGCDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSFDEIIDLNERLICRIFQD 266
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+ ++L PFPR+TYAE+M +YG DRPDTRF L+L +VSDI + F+VFS ++KSGG +
Sbjct: 267 AQGIELERPFPRITYAESMEKYGCDRPDTRFGLELVNVSDIVADMGFKVFSGAVKSGGQV 326
Query: 241 KVLCVPSGAKTYSNTALK-KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSN 299
KVL +P+G SN +K GD++N A++ GAKGL F++V + G ++ I A+ +L +
Sbjct: 327 KVLPIPNGNDAISNVRIKPGGDLFNAAVEMGAKGLAFIRVREDGAIDTIGAIKDNLSDAQ 386
Query: 300 KEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMF 359
K++LL R A L+LF G VNK+LDR+R V E+GLI+ ++ + +W+TDFPMF
Sbjct: 387 KQELLSRTGAEAGTLLLFGAGATDIVNKSLDRVRQLVGAEMGLINENQLNFVWVTDFPMF 446
Query: 360 EWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKV 419
E+N E+RLEALHHPFTAPNPED++DL++ARALAYD+V NG+EIGGGSLRIY+REVQ+KV
Sbjct: 447 EYNSDEKRLEALHHPFTAPNPEDLEDLATARALAYDIVLNGIEIGGGSLRIYQREVQEKV 506
Query: 420 LEIVGIS 426
+ +G+S
Sbjct: 507 FQTIGLS 513
|
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | ||||||
| 255562164 | 668 | aspartyl-tRNA synthetase, putative [Rici | 0.949 | 0.642 | 0.890 | 0.0 | |
| 225429171 | 657 | PREDICTED: aspartyl-tRNA synthetase [Vit | 0.949 | 0.652 | 0.878 | 0.0 | |
| 224056291 | 667 | predicted protein [Populus trichocarpa] | 0.949 | 0.643 | 0.871 | 0.0 | |
| 224103793 | 662 | predicted protein [Populus trichocarpa] | 0.944 | 0.645 | 0.873 | 0.0 | |
| 356513074 | 665 | PREDICTED: aspartyl-tRNA synthetase-like | 0.949 | 0.645 | 0.860 | 0.0 | |
| 356527835 | 667 | PREDICTED: LOW QUALITY PROTEIN: aspartyl | 0.949 | 0.643 | 0.848 | 0.0 | |
| 449465123 | 666 | PREDICTED: aspartate--tRNA ligase-like [ | 0.949 | 0.644 | 0.860 | 0.0 | |
| 449484517 | 670 | PREDICTED: aspartate--tRNA ligase-like [ | 0.949 | 0.640 | 0.860 | 0.0 | |
| 357521225 | 670 | Aspartyl-tRNA synthetase [Medicago trunc | 0.949 | 0.640 | 0.805 | 0.0 | |
| 30689804 | 664 | aspartyl-tRNA synthetase [Arabidopsis th | 0.949 | 0.646 | 0.806 | 0.0 |
| >gi|255562164|ref|XP_002522090.1| aspartyl-tRNA synthetase, putative [Ricinus communis] gi|223538689|gb|EEF40290.1| aspartyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/429 (89%), Positives = 408/429 (95%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
MKTG +EVA E+VQ+LNAVR+KLPFLVTTADDAKD VKEEIRLR+RCLDLRRQQMN N++
Sbjct: 166 MKTGLVEVAAENVQILNAVRTKLPFLVTTADDAKDSVKEEIRLRFRCLDLRRQQMNFNMM 225
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH+VVKLIRRYLEDV+GFVEIETP+LSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK
Sbjct: 226 LRHRVVKLIRRYLEDVYGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 285
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPL+DML+LNEDLIRK+FLE
Sbjct: 286 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRKVFLE 345
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
IK VQLPNPFPRLTYAEAMSRYGSDRPDTRF L+L DVSDIFLESPFRVF+DSL GGII
Sbjct: 346 IKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLELIDVSDIFLESPFRVFADSLNKGGII 405
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVPSGAK+YSNTALKKGDIYNEA KSGAKGLPFLKVLD G VEGI ALVSSL P K
Sbjct: 406 KVLCVPSGAKSYSNTALKKGDIYNEATKSGAKGLPFLKVLDDGEVEGIAALVSSLDPMKK 465
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
E+LL RCSAGP DLILFAVGH ASVNKTLDRLR F+A+E+GLID+S+HSILW+TDFPMFE
Sbjct: 466 EELLRRCSAGPGDLILFAVGHYASVNKTLDRLRMFIANEMGLIDHSRHSILWVTDFPMFE 525
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WND+EQRLEALHHPFTAPNPEDM+DLSSARALAYDMVYNGVEIGGGSLRIYKRE+QQKVL
Sbjct: 526 WNDTEQRLEALHHPFTAPNPEDMEDLSSARALAYDMVYNGVEIGGGSLRIYKREIQQKVL 585
Query: 421 EIVGISPEQ 429
EIVGIS EQ
Sbjct: 586 EIVGISAEQ 594
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429171|ref|XP_002271358.1| PREDICTED: aspartyl-tRNA synthetase [Vitis vinifera] gi|297736395|emb|CBI25118.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/429 (87%), Positives = 407/429 (94%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M+TG IEVAVEHVQVLNAV SKLPFLVTTADDAKD VKEEIRLRYRCLDLRRQQMN NI+
Sbjct: 154 MRTGLIEVAVEHVQVLNAVTSKLPFLVTTADDAKDTVKEEIRLRYRCLDLRRQQMNSNIM 213
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH+VVKLIRRYLED+HGFVEIETP+LSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK
Sbjct: 214 LRHRVVKLIRRYLEDIHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 273
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPL+DMLRLNEDLIR++FLE
Sbjct: 274 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLRLNEDLIRQVFLE 333
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
IK +QLPNPFPRLTYAEAMSRYGSDRPD RF L+L +VSD+F E+ F+VF+D+L SGGII
Sbjct: 334 IKGIQLPNPFPRLTYAEAMSRYGSDRPDLRFDLELREVSDVFSETTFKVFADTLASGGII 393
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVPSGAK YSNTALKKGDIY+EAIKSGAKGLPFLKVLD G VEGIPALVSSL P+NK
Sbjct: 394 KVLCVPSGAKHYSNTALKKGDIYSEAIKSGAKGLPFLKVLDDGEVEGIPALVSSLDPTNK 453
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
++LL +CSAG DLILFAVG ASVNKTLDRLR F+AHELGL+D+S+HSILW+TDFPMFE
Sbjct: 454 KRLLKQCSAGSGDLILFAVGDHASVNKTLDRLRVFIAHELGLVDHSRHSILWVTDFPMFE 513
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WN +EQRLEALHHPFTAPNPEDM+DLSSARALAYDMVYNGVEIGGGSLRI+KREVQ+KVL
Sbjct: 514 WNSAEQRLEALHHPFTAPNPEDMEDLSSARALAYDMVYNGVEIGGGSLRIFKREVQEKVL 573
Query: 421 EIVGISPEQ 429
EIVGISPEQ
Sbjct: 574 EIVGISPEQ 582
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224056291|ref|XP_002298795.1| predicted protein [Populus trichocarpa] gi|222846053|gb|EEE83600.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/429 (87%), Positives = 400/429 (93%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M TG IEV EH Q+LNAV++KLPFLVTT DDAKD VKEEIRLRYRCLDLRRQQM+ NI+
Sbjct: 164 MATGSIEVVAEHAQLLNAVKAKLPFLVTTVDDAKDSVKEEIRLRYRCLDLRRQQMSSNIM 223
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH+VVKLIRRYLEDV GFVEIETP+LSRSTPEGARDYLVPSR+QPGTFYALPQSPQLFK
Sbjct: 224 LRHRVVKLIRRYLEDVQGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFK 283
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP++DMLRLNEDLIRK+FLE
Sbjct: 284 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPMEDMLRLNEDLIRKVFLE 343
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
IK VQLPNPFPRLTYAEAMSRYGSDRPDTRF L L DVSDIF ES FRVF+DSLKSGGII
Sbjct: 344 IKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLHLKDVSDIFSESSFRVFADSLKSGGII 403
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVPSGAK+YSNTALKKGDIYNEAIKSGAKGL FLKVLD G EGI AL+SSL +NK
Sbjct: 404 KVLCVPSGAKSYSNTALKKGDIYNEAIKSGAKGLAFLKVLDNGEFEGISALLSSLDSTNK 463
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
EQLL RCSAGP DLILFAVGH +SVNKTLDRLR F+A++LGL D S++SILW+TDFPMFE
Sbjct: 464 EQLLSRCSAGPGDLILFAVGHHSSVNKTLDRLRLFIANQLGLNDPSRYSILWVTDFPMFE 523
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WN++EQRLEALHHPFTAPNPEDM DLSSARALAYDMVYNGVEIGGGSLRIYKRE+QQKVL
Sbjct: 524 WNETEQRLEALHHPFTAPNPEDMKDLSSARALAYDMVYNGVEIGGGSLRIYKREIQQKVL 583
Query: 421 EIVGISPEQ 429
EIVGI+PEQ
Sbjct: 584 EIVGITPEQ 592
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103793|ref|XP_002313196.1| predicted protein [Populus trichocarpa] gi|222849604|gb|EEE87151.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/427 (87%), Positives = 402/427 (94%)
Query: 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
TG IEV EHVQ+LNAV++KLPFLVTTADDAKD VKEEIRLRYRCLDLRRQQM+ NI+LR
Sbjct: 160 TGSIEVVAEHVQLLNAVKAKLPFLVTTADDAKDSVKEEIRLRYRCLDLRRQQMSSNIMLR 219
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
H+VVKLIRRYLEDV GFVEIETP+LSRSTPEGARDYLVPSR+QPGTFYALPQSPQLFKQM
Sbjct: 220 HRVVKLIRRYLEDVQGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFKQM 279
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182
LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT L+DMLRLNEDLIRK+FLEIK
Sbjct: 280 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTLEDMLRLNEDLIRKVFLEIK 339
Query: 183 DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKV 242
VQLPNP PRLTYAEAMS+YGSDRPDTRF L L +VSDIF ES FRVF+DSL SGGIIKV
Sbjct: 340 GVQLPNPIPRLTYAEAMSKYGSDRPDTRFDLHLKEVSDIFAESSFRVFADSLNSGGIIKV 399
Query: 243 LCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQ 302
LCVPSGAK+YSN+ALKKGDIYNEAIKSGAKGLPFLKVLD G +EGI ALVSSL +NKEQ
Sbjct: 400 LCVPSGAKSYSNSALKKGDIYNEAIKSGAKGLPFLKVLDDGELEGISALVSSLDSTNKEQ 459
Query: 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWN 362
LL RCSAGP DLILFAVGH SV++TLDRLR F+A++LGL+D+S+HSILW+TDFPMFEWN
Sbjct: 460 LLSRCSAGPGDLILFAVGHHPSVHRTLDRLRLFIANQLGLVDHSRHSILWVTDFPMFEWN 519
Query: 363 DSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI 422
++EQRLEALHHPFTAPNPEDM+DLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI
Sbjct: 520 ETEQRLEALHHPFTAPNPEDMEDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI 579
Query: 423 VGISPEQ 429
VGISPEQ
Sbjct: 580 VGISPEQ 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513074|ref|XP_003525239.1| PREDICTED: aspartyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/429 (86%), Positives = 399/429 (93%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M+TGFIEVA VQ+LN+V SKLPFLVTTADDAKD +KEEIRLRYRCLDLRRQQMN NIL
Sbjct: 163 MQTGFIEVAANKVQLLNSVNSKLPFLVTTADDAKDSLKEEIRLRYRCLDLRRQQMNFNIL 222
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRHKVVKLIRRYLEDVHGFVEIETP+LSRSTPEGARDYLVPSR+QPGTFYALPQSPQLFK
Sbjct: 223 LRHKVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFK 282
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMV+GFDKYYQIARCFRDEDLRADRQPEFTQLDME+AFTP +DML LNE+LIRK+FLE
Sbjct: 283 QMLMVAGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFTPYEDMLMLNEELIRKVFLE 342
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
IK V+LPNPFPRLTYAEAMSRYGSDRPDTRF L+L DVSDIF S F+VFSDSL+SGG+I
Sbjct: 343 IKGVELPNPFPRLTYAEAMSRYGSDRPDTRFDLELKDVSDIFSGSSFKVFSDSLESGGVI 402
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVPSG K YSN+ALKKGDIYNEA+KSGAKGLPFLKVLD G +EGI ALVSS+ P+ +
Sbjct: 403 KVLCVPSGTKKYSNSALKKGDIYNEALKSGAKGLPFLKVLDDGNIEGISALVSSMDPTTR 462
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
LL RCS+GPSDLILFAVGH ASVNKTLDRLR +VAH+LGLID +HSILWITDFPMFE
Sbjct: 463 GNLLRRCSSGPSDLILFAVGHHASVNKTLDRLRVYVAHDLGLIDLGRHSILWITDFPMFE 522
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WND EQRLEALHHPFTAPNPEDM+DL+SARALAYDMVYNGVEIGGGSLRIYKR++QQKVL
Sbjct: 523 WNDPEQRLEALHHPFTAPNPEDMNDLASARALAYDMVYNGVEIGGGSLRIYKRDIQQKVL 582
Query: 421 EIVGISPEQ 429
EIVGIS EQ
Sbjct: 583 EIVGISMEQ 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527835|ref|XP_003532512.1| PREDICTED: LOW QUALITY PROTEIN: aspartyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/429 (84%), Positives = 398/429 (92%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M+TGFIEVA VQVLN+V SKLPFLVTTADDAKD +KEEIRLRYRCLDLRRQQMN NIL
Sbjct: 159 MQTGFIEVAANRVQVLNSVNSKLPFLVTTADDAKDSLKEEIRLRYRCLDLRRQQMNFNIL 218
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRHKVVKLIRRYLED+HGFVEIETP+LSRSTPEGARDYLVPSR+QPGTFYALPQSPQLFK
Sbjct: 219 LRHKVVKLIRRYLEDIHGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFK 278
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMV+GFDKYYQIARCFRDEDLRADRQPEFTQLDME+AFTP +DML LNE+LIRK+FLE
Sbjct: 279 QMLMVAGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFTPYEDMLTLNEELIRKVFLE 338
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
IK V+LPNPFPRLTYAEAMSRYGSDRPDTRF L L DVSDIF S F+VFSDSL++GG+I
Sbjct: 339 IKGVELPNPFPRLTYAEAMSRYGSDRPDTRFDLDLKDVSDIFSGSSFKVFSDSLENGGVI 398
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVPSG K YSN+ALKKGDIYNEA+KSGAKGLPFLKVLD G +EGI LVSS+ P+ +
Sbjct: 399 KVLCVPSGTKKYSNSALKKGDIYNEALKSGAKGLPFLKVLDDGNIEGISVLVSSMDPTTR 458
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
LL RCSAGPSDLILFAVGH ASVNKTLDRLR +VAH+LGL+D+ +HS+LWITDFPMFE
Sbjct: 459 GNLLRRCSAGPSDLILFAVGHHASVNKTLDRLRVYVAHDLGLVDHGRHSVLWITDFPMFE 518
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WND EQRLEALHHPFTAPNP+DM+DL+SARALAYDMVYNGVEIGGGSLRIYKR++QQKVL
Sbjct: 519 WNDPEQRLEALHHPFTAPNPKDMNDLASARALAYDMVYNGVEIGGGSLRIYKRDIQQKVL 578
Query: 421 EIVGISPEQ 429
E+VGIS EQ
Sbjct: 579 EVVGISMEQ 587
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465123|ref|XP_004150278.1| PREDICTED: aspartate--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/429 (86%), Positives = 399/429 (93%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
MKTG IEVA EHVQ+LN+V SKLPFLVTTADDAKD KEEIRLRYR LDLRR+QMN NI+
Sbjct: 167 MKTGLIEVAAEHVQILNSVGSKLPFLVTTADDAKDSAKEEIRLRYRYLDLRRKQMNFNIM 226
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRHKVVKL+RRYLEDVHGFVEIETP+LSRSTPEGARDYLVPSRVQPGTF+ALPQSPQLFK
Sbjct: 227 LRHKVVKLLRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFFALPQSPQLFK 286
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL+FT L+DMLRLNEDLIRK+F E
Sbjct: 287 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSFTTLEDMLRLNEDLIRKVFWE 346
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+K VQLPNPFPRLTYAEAMSRYGSDRPDTRF LQLNDVSDIF +SPF+VF+D+L SGGII
Sbjct: 347 VKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSDIFADSPFKVFADALSSGGII 406
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVPSGAK YSNTALKKGDIY EA KSGAKGLPFLKV D GG+EGIPALVS L P+++
Sbjct: 407 KVLCVPSGAKRYSNTALKKGDIYTEATKSGAKGLPFLKVTDDGGIEGIPALVSCLDPTDR 466
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
E+ L RCSAGP DLILFAVGH SVNKTLDRLR +VA+ELGL+D+S+HSILW+TDFPMFE
Sbjct: 467 EEFLNRCSAGPGDLILFAVGHRVSVNKTLDRLRLYVANELGLVDHSRHSILWVTDFPMFE 526
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WND +QRLEALHHPFTAPNPED+ DL SARALAYDMVYNGVEIGGGSLRI+KREVQ+KVL
Sbjct: 527 WNDLDQRLEALHHPFTAPNPEDVGDLPSARALAYDMVYNGVEIGGGSLRIHKREVQEKVL 586
Query: 421 EIVGISPEQ 429
EIVGIS EQ
Sbjct: 587 EIVGISLEQ 595
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449484517|ref|XP_004156904.1| PREDICTED: aspartate--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/429 (86%), Positives = 399/429 (93%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
MKTG IEVA EHVQ+LN+V SKLPFLVTTADDAKD KEEIRLRYR LDLRR+QMN NI+
Sbjct: 167 MKTGLIEVAAEHVQILNSVGSKLPFLVTTADDAKDSAKEEIRLRYRYLDLRRKQMNFNIM 226
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRHKVVKL+RRYLEDVHGFVEIETP+LSRSTPEGARDYLVPSRVQPGTF+ALPQSPQLFK
Sbjct: 227 LRHKVVKLLRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFFALPQSPQLFK 286
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL+FT L+DMLRLNEDLIRK+F E
Sbjct: 287 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSFTTLEDMLRLNEDLIRKVFWE 346
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+K VQLPNPFPRLTYAEAMSRYGSDRPDTRF LQLNDVSDIF +SPF+VF+D+L SGGII
Sbjct: 347 VKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSDIFADSPFKVFADALSSGGII 406
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVPSGAK YSNTALKKGDIY EA KSGAKGLPFLKV D GG+EGIPALVS L P+++
Sbjct: 407 KVLCVPSGAKRYSNTALKKGDIYTEATKSGAKGLPFLKVTDDGGIEGIPALVSCLDPTDR 466
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
E+ L RCSAGP DLILFAVGH SVNKTLDRLR +VA+ELGL+D+S+HSILW+TDFPMFE
Sbjct: 467 EEFLNRCSAGPGDLILFAVGHRVSVNKTLDRLRLYVANELGLVDHSRHSILWVTDFPMFE 526
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WND +QRLEALHHPFTAPNPED+ DL SARALAYDMVYNGVEIGGGSLRI+KREVQ+KVL
Sbjct: 527 WNDLDQRLEALHHPFTAPNPEDVGDLPSARALAYDMVYNGVEIGGGSLRIHKREVQEKVL 586
Query: 421 EIVGISPEQ 429
EIVGIS EQ
Sbjct: 587 EIVGISLEQ 595
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521225|ref|XP_003630901.1| Aspartyl-tRNA synthetase [Medicago truncatula] gi|355524923|gb|AET05377.1| Aspartyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/438 (80%), Positives = 393/438 (89%), Gaps = 9/438 (2%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLR-----YRCLDLRRQQM 55
+KTGFIE+A VQ+LN+V +KLPFLVTT D AKD +KEE+RLR YR LDLRRQQM
Sbjct: 159 IKTGFIEIAANDVQLLNSVNAKLPFLVTTTDHAKDSLKEEVRLRCEGVRYRYLDLRRQQM 218
Query: 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQS 115
N N+LLRH VVKLIRRYLED+HGFVEIETP+LSRSTPEGARDYLVPSR+Q GTFYALPQS
Sbjct: 219 NSNMLLRHNVVKLIRRYLEDIHGFVEIETPILSRSTPEGARDYLVPSRIQQGTFYALPQS 278
Query: 116 PQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIR 175
PQLFKQMLMV+GFDKYYQ+ARCFRDEDLRADRQPEFTQLDME+AFTPL+DML LNE+LIR
Sbjct: 279 PQLFKQMLMVAGFDKYYQVARCFRDEDLRADRQPEFTQLDMEMAFTPLEDMLSLNEELIR 338
Query: 176 KIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLK 235
K+FLEIK V+LPNPFPRLTYAEAM+RYGSDRPDTRF L+L DVSDIF S F+VFSDSL+
Sbjct: 339 KVFLEIKGVELPNPFPRLTYAEAMNRYGSDRPDTRFDLELKDVSDIFSGSSFKVFSDSLE 398
Query: 236 SGGIIKVLCVPSGAKTYSNTALKK----GDIYNEAIKSGAKGLPFLKVLDAGGVEGIPAL 291
GG+IKV+CVPSGAK YSN+ LKK G IYNEA KSGAKGLPFLK+ + G +EGI AL
Sbjct: 399 CGGVIKVICVPSGAKKYSNSVLKKSGANGGIYNEAHKSGAKGLPFLKITENGDIEGISAL 458
Query: 292 VSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSIL 351
VSS+ + +E LL RCSAGPSDLILFAVGH ASVNKTLDRLR +VAHELGLID+++HSIL
Sbjct: 459 VSSMDSATREDLLRRCSAGPSDLILFAVGHHASVNKTLDRLRVYVAHELGLIDHARHSIL 518
Query: 352 WITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
WITDFPMFEWNDSEQRLEALHHPFTAPNPEDM++L+SARALAYDMVYNGVEIGGGSLRIY
Sbjct: 519 WITDFPMFEWNDSEQRLEALHHPFTAPNPEDMNNLASARALAYDMVYNGVEIGGGSLRIY 578
Query: 412 KREVQQKVLEIVGISPEQ 429
KR++QQKVLE VGIS EQ
Sbjct: 579 KRDIQQKVLETVGISMEQ 596
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30689804|ref|NP_195102.2| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|332660874|gb|AEE86274.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/429 (80%), Positives = 388/429 (90%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
MKTGF+EV EHV++LN VR+KLPFLVTTAD+ KD +KEEIRLR+RCLDLRRQQM +NI+
Sbjct: 161 MKTGFVEVVAEHVEILNPVRTKLPFLVTTADENKDLIKEEIRLRFRCLDLRRQQMKNNIV 220
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH VVKLIRRYLED HGF+EIETP+LSRSTPEGARDYLVPSR+Q GTFYALPQSPQLFK
Sbjct: 221 LRHNVVKLIRRYLEDRHGFIEIETPILSRSTPEGARDYLVPSRIQSGTFYALPQSPQLFK 280
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDME+AF P++DML+LNEDLIRK+F E
Sbjct: 281 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFMPMEDMLKLNEDLIRKVFSE 340
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
IK +QLP+PFPRLTYA+AM RYGSDRPDTRF L+L DVS++F ES FRVF+++L+SGGII
Sbjct: 341 IKGIQLPDPFPRLTYADAMDRYGSDRPDTRFDLELKDVSNVFTESSFRVFTEALESGGII 400
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVP GAK YSN+ALKKGDIYNEA+KSGAKGLPFLKVLD G +EGI ALVSSL + K
Sbjct: 401 KVLCVPLGAKKYSNSALKKGDIYNEAMKSGAKGLPFLKVLDNGEIEGIAALVSSLDSAGK 460
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
+ +C A P DLILF VG SVNKTLDRLR FVAH++ LID+SKHSILW+TDFPMFE
Sbjct: 461 INFVKQCGAAPGDLILFGVGPVTSVNKTLDRLRLFVAHDMDLIDHSKHSILWVTDFPMFE 520
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WN+ EQRLEALHHPFTAP PEDMDDL SARALAYDMVYNGVEIGGGSLRIYKR+VQ+KVL
Sbjct: 521 WNEPEQRLEALHHPFTAPKPEDMDDLPSARALAYDMVYNGVEIGGGSLRIYKRDVQEKVL 580
Query: 421 EIVGISPEQ 429
EI+GISPE+
Sbjct: 581 EIIGISPEE 589
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | ||||||
| TAIR|locus:2134238 | 664 | AT4G33760 [Arabidopsis thalian | 0.949 | 0.646 | 0.806 | 4.7e-190 | |
| TIGR_CMR|BA_4632 | 591 | BA_4632 "aspartyl-tRNA synthet | 0.922 | 0.705 | 0.486 | 1.8e-101 | |
| TIGR_CMR|GSU_1463 | 594 | GSU_1463 "aspartyl-tRNA synthe | 0.915 | 0.696 | 0.488 | 2.3e-101 | |
| TIGR_CMR|CHY_2204 | 592 | CHY_2204 "aspartyl-tRNA synthe | 0.915 | 0.699 | 0.460 | 2.5e-97 | |
| TIGR_CMR|DET_0708 | 598 | DET_0708 "aspartyl-tRNA synthe | 0.929 | 0.702 | 0.439 | 1.3e-93 | |
| UNIPROTKB|Q9KSU0 | 591 | aspS "Aspartate--tRNA ligase" | 0.915 | 0.700 | 0.472 | 1.6e-93 | |
| TIGR_CMR|VC_1166 | 591 | VC_1166 "aspartyl-tRNA synthet | 0.915 | 0.700 | 0.472 | 1.6e-93 | |
| UNIPROTKB|P21889 | 590 | aspS "aspartyl-tRNA synthetase | 0.918 | 0.703 | 0.471 | 1.1e-92 | |
| TIGR_CMR|CJE_0743 | 583 | CJE_0743 "aspartyl-tRNA synthe | 0.913 | 0.708 | 0.457 | 3e-92 | |
| TIGR_CMR|CPS_2114 | 601 | CPS_2114 "aspartyl-tRNA synthe | 0.918 | 0.690 | 0.459 | 1.1e-89 |
| TAIR|locus:2134238 AT4G33760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1842 (653.5 bits), Expect = 4.7e-190, P = 4.7e-190
Identities = 346/429 (80%), Positives = 388/429 (90%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
MKTGF+EV EHV++LN VR+KLPFLVTTAD+ KD +KEEIRLR+RCLDLRRQQM +NI+
Sbjct: 161 MKTGFVEVVAEHVEILNPVRTKLPFLVTTADENKDLIKEEIRLRFRCLDLRRQQMKNNIV 220
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH VVKLIRRYLED HGF+EIETP+LSRSTPEGARDYLVPSR+Q GTFYALPQSPQLFK
Sbjct: 221 LRHNVVKLIRRYLEDRHGFIEIETPILSRSTPEGARDYLVPSRIQSGTFYALPQSPQLFK 280
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDME+AF P++DML+LNEDLIRK+F E
Sbjct: 281 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFMPMEDMLKLNEDLIRKVFSE 340
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
IK +QLP+PFPRLTYA+AM RYGSDRPDTRF L+L DVS++F ES FRVF+++L+SGGII
Sbjct: 341 IKGIQLPDPFPRLTYADAMDRYGSDRPDTRFDLELKDVSNVFTESSFRVFTEALESGGII 400
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
KVLCVP GAK YSN+ALKKGDIYNEA+KSGAKGLPFLKVLD G +EGI ALVSSL + K
Sbjct: 401 KVLCVPLGAKKYSNSALKKGDIYNEAMKSGAKGLPFLKVLDNGEIEGIAALVSSLDSAGK 460
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
+ +C A P DLILF VG SVNKTLDRLR FVAH++ LID+SKHSILW+TDFPMFE
Sbjct: 461 INFVKQCGAAPGDLILFGVGPVTSVNKTLDRLRLFVAHDMDLIDHSKHSILWVTDFPMFE 520
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WN+ EQRLEALHHPFTAP PEDMDDL SARALAYDMVYNGVEIGGGSLRIYKR+VQ+KVL
Sbjct: 521 WNEPEQRLEALHHPFTAPKPEDMDDLPSARALAYDMVYNGVEIGGGSLRIYKRDVQEKVL 580
Query: 421 EIVGISPEQ 429
EI+GISPE+
Sbjct: 581 EIIGISPEE 589
|
|
| TIGR_CMR|BA_4632 BA_4632 "aspartyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 211/434 (48%), Positives = 288/434 (66%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M TG IEV V VLNA ++ P ++ ADD E++RL+YR LDLRR M +
Sbjct: 90 MATGRIEVQATKVSVLNAAKTT-PIII--ADDTD--ASEDVRLKYRYLDLRRPVMFNTFK 144
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
+RH V K IR +L D F+E+ETP+L++STPEGARDYLVPSRV G FYALPQSPQLFK
Sbjct: 145 MRHDVTKTIRNFL-DTEEFLEVETPILTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFK 203
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMV GF++YYQ+ARCFRDEDLRADRQPEFTQ+D+E +F D++L + E ++ K+ +
Sbjct: 204 QLLMVGGFERYYQVARCFRDEDLRADRQPEFTQIDIEASFLTQDEILDMMERMMTKVMKD 263
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
K V++ PFPR+ YA+AM+RYGSD+PDTRF ++L D+S+ F+VF+ +++SGG +
Sbjct: 264 AKGVEVSAPFPRMKYADAMARYGSDKPDTRFEMELTDLSEFAAGCGFKVFTSAVESGGQV 323
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLDAGGVEGIPALVSSLGPSN 299
K + A YS K D E +K GAKGL +LKV + G++G P + G +
Sbjct: 324 KAINAKGAASKYSR---KDIDALTEFVKVYGAKGLAWLKV-EEDGLKG-P-IAKFFGEED 377
Query: 300 KEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMF 359
L+ A DL+LF + V +L LR + EL LID SK + LW+TD+P+
Sbjct: 378 ASVLMNTLEATAGDLLLFVADKKSVVADSLGALRLRLGKELELIDESKFNFLWVTDWPLL 437
Query: 360 EWNDSEQRLEALHHPFTAPNPEDMDDLSSA----RALAYDMVYNGVEIGGGSLRIYKREV 415
E+++ R A HHPFT P ED++ L +A RA AYD+V NG E+GGGSLRIY+R+V
Sbjct: 438 EYDEDADRYFAAHHPFTMPFREDVELLETAPEKARAQAYDLVLNGYELGGGSLRIYERDV 497
Query: 416 QQKVLEIVGISPEQ 429
Q+K+ + +G S E+
Sbjct: 498 QEKMFKALGFSQEE 511
|
|
| TIGR_CMR|GSU_1463 GSU_1463 "aspartyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 213/436 (48%), Positives = 293/436 (67%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNI 59
MKTG +E+ V ++LN RSK LPF T DD D V E +RL++R LDLRR + N+
Sbjct: 96 MKTGEVEILVTQCKLLN--RSKALPF---TLDDYVD-VAENLRLKHRYLDLRRTPLQQNL 149
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF 119
+LR +V ++ R+YL + +GF+EIETP L++STPEGARD+LVPSR+ G FYALPQSPQ+F
Sbjct: 150 ILRSRVSQVTRQYLTE-NGFLEIETPFLTKSTPEGARDFLVPSRINQGNFYALPQSPQIF 208
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179
KQ+LM+SGFD+Y+Q+ RCFRDEDLRADRQPEFTQ+D EL+F DD++ + E LI +IF
Sbjct: 209 KQILMISGFDRYFQVVRCFRDEDLRADRQPEFTQIDCELSFVDRDDVIAVMEGLIARIFK 268
Query: 180 EIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGI 239
E K++ + P PR+TYAEA+ RYG D PD RF L+L +++DI S F+VF+D GGI
Sbjct: 269 EAKEIDVQLPIPRMTYAEAIRRYGVDNPDVRFGLELVELTDIVKGSGFKVFADVAAGGGI 328
Query: 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLDAGGVEGIPALVSSLGPS 298
IK L AK + + K+ D E +K GAKGL ++K+ GG P ++ +
Sbjct: 329 IKGL----NAKGCARFSRKEIDDLTEFVKIYGAKGLAYVKI--EGGEWHSP--IAKFFTA 380
Query: 299 NKEQLLIRC-SAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFP 357
+ + R A DL+LF P VN +L +LR +A LGL+D +WITDFP
Sbjct: 381 QEIADMNRAFGAEEGDLLLFVADKPKVVNDSLGKLRNQLAQILGLVDKGTFKFVWITDFP 440
Query: 358 MFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVYNGVEIGGGSLRIYKR 413
+ EW++ E+R A+HHPFTAP ED+D + S RA AYD+V NG EIGGGS+RI+++
Sbjct: 441 LLEWDEEEKRWAAVHHPFTAPMDEDLDKVESDPGACRAKAYDLVLNGNEIGGGSIRIHQQ 500
Query: 414 EVQQKVLEIVGISPEQ 429
+Q + ++G+S E+
Sbjct: 501 HIQSLMFRMLGLSEEE 516
|
|
| TIGR_CMR|CHY_2204 CHY_2204 "aspartyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 199/432 (46%), Positives = 286/432 (66%)
Query: 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLR 62
TG +EV V+VLN ++ PF + +D D V E++RLRYR LDLRR +M + LR
Sbjct: 92 TGEVEVYASKVEVLNKAKTP-PFYI---EDGID-VDEQVRLRYRYLDLRRPEMQRALELR 146
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
HK K +R +L D HGF EIETP+L++STPEGARD+LVPSR+ PG FYALPQSPQ+FKQ+
Sbjct: 147 HKAAKAVRDFL-DRHGFWEIETPMLTKSTPEGARDFLVPSRLNPGKFYALPQSPQIFKQI 205
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182
LMV+G ++Y+QI RCFRDEDLRADRQPEFTQ+D+E++F +D++ L E++I +F E
Sbjct: 206 LMVAGMERYFQIVRCFRDEDLRADRQPEFTQIDIEMSFIDREDIMSLMEEMIAYVFKEAI 265
Query: 183 DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKV 242
V++ PF R++Y EAM +YG+D+PD RF L++ DV+++ + F+VF +GG+I+
Sbjct: 266 GVEVKTPFKRISYQEAMLKYGTDKPDLRFGLEITDVTELVKDVEFKVFQTVAHAGGVIRG 325
Query: 243 LCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQ 302
L G +S L D+ GAKGL +L +L E + + ++ + +
Sbjct: 326 LNA-KGCAGFSRKDLD--DLTKFVGNFGAKGLAYL-ILTP---EEVKSPIAKFFKEEELR 378
Query: 303 LLIRCSAG-PSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEW 361
LI G P D++ F P + L LR +A LGLI ++ + LW+ DFP+ E+
Sbjct: 379 ALINALQGEPGDILFFVADKPEVAAQALGNLRLHLAERLGLIPENEFNFLWVIDFPLLEY 438
Query: 362 NDSEQRLEALHHPFTAPNPED---MDDLSS-ARALAYDMVYNGVEIGGGSLRIYKREVQQ 417
++ E+R A+HHPFTAP ED MD+ RA AYDMV NGVEIGGGS+RI++R++Q+
Sbjct: 439 DNEEKRFVAMHHPFTAPMDEDLPLMDENPLLVRAKAYDMVLNGVEIGGGSIRIHRRDIQE 498
Query: 418 KVLEIVGISPEQ 429
K+ +++G+S E+
Sbjct: 499 KMFKLIGLSEEE 510
|
|
| TIGR_CMR|DET_0708 DET_0708 "aspartyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 194/441 (43%), Positives = 287/441 (65%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M +G +EV E ++LN ++ PF + ++ + V E +RL+YR LD+RRQ M +N++
Sbjct: 88 MLSGLVEVVAEGAKILNTAKTP-PFYIN--EEVE--VDESLRLKYRYLDIRRQGMKNNLI 142
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
+RHK V +R++L D GF+EIETP+L +STPEGARDYLVPSR+ PG F+ALPQSPQ K
Sbjct: 143 IRHKTVSFMRQFLND-RGFIEIETPILIKSTPEGARDYLVPSRLFPGQFFALPQSPQQLK 201
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMV+G +KYYQ+ARCFRDEDLRADRQPEFTQLDME++F +DM++L EDL +
Sbjct: 202 QLLMVAGMEKYYQVARCFRDEDLRADRQPEFTQLDMEMSFVDENDMMQLMEDLFTGLVAS 261
Query: 181 IK-DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGI 239
++ D++ FPR+++A+AM +YG D+PD RF ++L D++DI S F VF + GG
Sbjct: 262 VRPDMKYNKKFPRISFADAMEKYGCDKPDLRFGMELADITDIGASSAFGVFKNVAAQGGA 321
Query: 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGL-PFLKVLDAGGVEGIPA-LVSSLGP 297
IK + P G Y+ + ++ ++ N A K GA GL P ++G ++ + +V S+
Sbjct: 322 IKAISAP-GCGGYNKS--QQEELINLAKKYGAAGLVPISLGAESGELKDLTMEMVKSVSA 378
Query: 298 S--NKEQLLI---RCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILW 352
E++ R A P LIL G VN L +R +A +L L D ++ S +
Sbjct: 379 KYLTLEEIKTIAERSGAKPGGLILIVAGARKMVNSVLGEMRNHLAAKLDLCDKNELSFAF 438
Query: 353 ITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD--DLSSAR--ALAYDMVYNGVEIGGGSL 408
+ DFP+F+W++ +R +++HHPFTAP D+ D AR + AYD+V NG EI GGS+
Sbjct: 439 VVDFPLFQWDEEGKRWDSVHHPFTAPLESDLPLMDTDPARVGSRAYDVVCNGYEIAGGSI 498
Query: 409 RIYKREVQQKVLEIVGISPEQ 429
RI++ ++Q+KV ++G + EQ
Sbjct: 499 RIHQADLQRKVFHLLGYNNEQ 519
|
|
| UNIPROTKB|Q9KSU0 aspS "Aspartate--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 207/438 (47%), Positives = 282/438 (64%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNI 59
M TG +E+ ++++N RS LP D EE RL+YR LDLRR +M+ I
Sbjct: 87 MATGEVELLARSLEIIN--RSDVLPL------DFNQKNSEEQRLKYRYLDLRRPEMSDRI 138
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF 119
LR K +RR+L D HGF++IETPVL+++TPEGARDYLVPSRV G+FYALPQSPQLF
Sbjct: 139 KLRAKASSFVRRFL-DTHGFLDIETPVLTKATPEGARDYLVPSRVHKGSFYALPQSPQLF 197
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179
KQ+LM+SGFD+YYQI +CFRDEDLRADRQPEFTQ+D+E +F + + + E +IR+++L
Sbjct: 198 KQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDIETSFMTAEQVRAVTEKMIREMWL 257
Query: 180 EIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSG-G 238
E+ +V L + FP + Y+EAM R+GSD+PD R ++L DV+D+ + F+VFS G
Sbjct: 258 ELLNVDLGD-FPIMPYSEAMRRFGSDKPDLRNPMELVDVADLLKDVDFKVFSGPANDPKG 316
Query: 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLD-AGGVEGIPALVSSLG 296
+ LC+P GA K+ D Y + GAKGL +LKV D A G+EGI + V+
Sbjct: 317 RVAALCIPGGAAL----TRKQIDEYTAFVAIYGAKGLAWLKVNDLAAGMEGIQSPVAKFL 372
Query: 297 PSNKEQLLI-RCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITD 355
Q +I R A D+ILF V + L LR ELG+ + S + LW+ D
Sbjct: 373 TEEIIQAIIERTQAQTGDIILFGADSAKVVAEALGALRLKAGKELGITNESAWAPLWVVD 432
Query: 356 FPMFEWNDSEQRLEALHHPFTAP---NPEDMD-DLSSARALAYDMVYNGVEIGGGSLRIY 411
FPMFE +D E + A+HHPFT+P +PE + + A + AYDMV NG E+GGGS+RI+
Sbjct: 433 FPMFE-SDDEGNVAAMHHPFTSPLNLSPEQLKANPEEALSNAYDMVLNGYEVGGGSVRIH 491
Query: 412 KREVQQKVLEIVGISPEQ 429
E+Q V +I+GI+PE+
Sbjct: 492 NAEMQSAVFDILGITPEE 509
|
|
| TIGR_CMR|VC_1166 VC_1166 "aspartyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 207/438 (47%), Positives = 282/438 (64%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNI 59
M TG +E+ ++++N RS LP D EE RL+YR LDLRR +M+ I
Sbjct: 87 MATGEVELLARSLEIIN--RSDVLPL------DFNQKNSEEQRLKYRYLDLRRPEMSDRI 138
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF 119
LR K +RR+L D HGF++IETPVL+++TPEGARDYLVPSRV G+FYALPQSPQLF
Sbjct: 139 KLRAKASSFVRRFL-DTHGFLDIETPVLTKATPEGARDYLVPSRVHKGSFYALPQSPQLF 197
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179
KQ+LM+SGFD+YYQI +CFRDEDLRADRQPEFTQ+D+E +F + + + E +IR+++L
Sbjct: 198 KQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDIETSFMTAEQVRAVTEKMIREMWL 257
Query: 180 EIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSG-G 238
E+ +V L + FP + Y+EAM R+GSD+PD R ++L DV+D+ + F+VFS G
Sbjct: 258 ELLNVDLGD-FPIMPYSEAMRRFGSDKPDLRNPMELVDVADLLKDVDFKVFSGPANDPKG 316
Query: 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLD-AGGVEGIPALVSSLG 296
+ LC+P GA K+ D Y + GAKGL +LKV D A G+EGI + V+
Sbjct: 317 RVAALCIPGGAAL----TRKQIDEYTAFVAIYGAKGLAWLKVNDLAAGMEGIQSPVAKFL 372
Query: 297 PSNKEQLLI-RCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITD 355
Q +I R A D+ILF V + L LR ELG+ + S + LW+ D
Sbjct: 373 TEEIIQAIIERTQAQTGDIILFGADSAKVVAEALGALRLKAGKELGITNESAWAPLWVVD 432
Query: 356 FPMFEWNDSEQRLEALHHPFTAP---NPEDMD-DLSSARALAYDMVYNGVEIGGGSLRIY 411
FPMFE +D E + A+HHPFT+P +PE + + A + AYDMV NG E+GGGS+RI+
Sbjct: 433 FPMFE-SDDEGNVAAMHHPFTSPLNLSPEQLKANPEEALSNAYDMVLNGYEVGGGSVRIH 491
Query: 412 KREVQQKVLEIVGISPEQ 429
E+Q V +I+GI+PE+
Sbjct: 492 NAEMQSAVFDILGITPEE 509
|
|
| UNIPROTKB|P21889 aspS "aspartyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 206/437 (47%), Positives = 277/437 (63%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
M TG IEV + ++N LP D+ EE RL+YR LDLRR +M +
Sbjct: 87 MATGEIEVLASSLTIINRA-DVLPL------DSNHVNTEEARLKYRYLDLRRPEMAQRLK 139
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
R K+ L+RR+++D HGF++IETP+L+++TPEGARDYLVPSRV G FYALPQSPQLFK
Sbjct: 140 TRAKITSLVRRFMDD-HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFK 198
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LM+SGFD+YYQI +CFRDEDLRADRQPEFTQ+D+E +F + + E L+R ++LE
Sbjct: 199 QLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLE 258
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSG-GI 239
+K V L + FP +T+AEA RYGSD+PD R ++L DV+D+ F VF+ G
Sbjct: 259 VKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGR 317
Query: 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLD-AGGVEGIPALVSS-LG 296
+ L VP GA + K+ D Y +K GAKGL ++KV + A G+EGI + V+ L
Sbjct: 318 VAALRVPGGA----SLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLN 373
Query: 297 PSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDF 356
E +L R +A D+I F + V + LR V +LGL D SK + LW+ DF
Sbjct: 374 AEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDF 433
Query: 357 PMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSAR----ALAYDMVYNGVEIGGGSLRIYK 412
PMFE +D E L A+HHPFT+P +L +A A AYDMV NG E+GGGS+RI+
Sbjct: 434 PMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHN 492
Query: 413 REVQQKVLEIVGISPEQ 429
++QQ V I+GI+ E+
Sbjct: 493 GDMQQTVFGILGINEEE 509
|
|
| TIGR_CMR|CJE_0743 CJE_0743 "aspartyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 198/433 (45%), Positives = 278/433 (64%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
+KTG IEV V + + N + PF + AD++ V EE+RL+YR LDLR ++ N
Sbjct: 88 LKTGEIEVVVSKLTIENE-SAVPPFAI--ADES---VNEELRLKYRFLDLRNPKLYENFA 141
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LR K R L ++ GF+E+ETP+L+++TPEGARDYLVPSRV G FYALPQSPQLFK
Sbjct: 142 LRSKACIAARNSLANM-GFLEVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFK 200
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LM SGFD+Y+QIA+CFRDEDLRADRQPEFTQ+D+E++F D++ + E ++ IF
Sbjct: 201 QLLMCSGFDRYFQIAKCFRDEDLRADRQPEFTQIDIEMSFCEQKDVINVAETFLKDIFKA 260
Query: 181 I-KDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSG-- 237
K++Q PF ++ Y +AM YGSD+PD RF+L+ DV DIF +S +F++ K
Sbjct: 261 CGKEIQ--TPFRQMQYKDAMENYGSDKPDLRFNLKFIDVIDIFAKSNNEIFANIAKDTKK 318
Query: 238 GIIKVLCVPSGAKTYSNTALKKGDIYNEAI-KSGAKGLPFLKVLDAGGVEGIPALVSSLG 296
IK + VP G +S +++ + E + K GA+GL F++V + G++G P L
Sbjct: 319 NRIKAIRVPKGDTIFSKRQMQR---FEEFVRKFGAQGLAFIQVKE-DGLKG-P-LCKFFS 372
Query: 297 PSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDF 356
+ +L RC D++ F G +V + R R F+A+EL LID + LW+ DF
Sbjct: 373 EEDLNELSKRCELEVGDVVFFGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDF 432
Query: 357 PMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQ 416
PMFE ND + A+HHPFT P D DL ++AYD+V NGVE+GGGS+RI+K ++Q
Sbjct: 433 PMFEQND-DGSYSAMHHPFTMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQ 491
Query: 417 QKVLEIVGISPEQ 429
QKV +++ I EQ
Sbjct: 492 QKVFKLLNIDEEQ 504
|
|
| TIGR_CMR|CPS_2114 CPS_2114 "aspartyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 202/440 (45%), Positives = 273/440 (62%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
MKTG IEV + +LN + LP D+ EE+RL+YR LDLRR +M +
Sbjct: 87 MKTGGIEVLGLELTILNK-SAPLPL------DSNQVNSEELRLKYRYLDLRRVEMTERLR 139
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
R KV +R LE GF++IETP+L+ +TPEGARDYLVPSR G F+ALPQSPQLFK
Sbjct: 140 FRAKVTSAVRSSLES-QGFLDIETPILTAATPEGARDYLVPSRTHKGQFFALPQSPQLFK 198
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LM+SG ++YYQI +CFRDEDLRADRQPEFTQ+D+E +F D ++ + E +IR++F E
Sbjct: 199 QLLMMSGMERYYQIVKCFRDEDLRADRQPEFTQIDIETSFMSSDQVMEVTEKMIRELFQE 258
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKS-GGI 239
+ DV L FPR+ Y+EAM+R+GSD+PD R L+L DV DI + F+VFS G
Sbjct: 259 LLDVDL-GEFPRMPYSEAMTRFGSDKPDLRNPLELIDVDDILKDVEFKVFSGPANDENGR 317
Query: 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKV--LDAG---GVEGIPA-LVS 293
+ V+C+P GA +S L ++ GAKG+P+LKV +DA GVEG+ + ++
Sbjct: 318 VAVICLPQGAAKFSRKGLD--ELTKFVGIYGAKGMPWLKVNDIDAALSTGVEGLQSPILK 375
Query: 294 SLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWI 353
L LL R +A D+I F V ++L LR + EL L+ + LW+
Sbjct: 376 FLSSDEAIALLKRTNAKTGDIIFFGADQYNVVTESLGALRLKLGEELDLLQG-EWKPLWV 434
Query: 354 TDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS--ARAL--AYDMVYNGVEIGGGSLR 409
DFPMFE D + A+HHPFTAP + L + AL AYDMV NG E+GGGS+R
Sbjct: 435 VDFPMFEEVDGH--MHAIHHPFTAPTNLTAEQLEANPVGALSDAYDMVLNGCELGGGSVR 492
Query: 410 IYKREVQQKVLEIVGISPEQ 429
I+ +++Q V I+GIS E+
Sbjct: 493 IHNQDMQAAVFRILGISDEE 512
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5N5I8 | SYD_SYNP6 | 6, ., 1, ., 1, ., 1, 2 | 0.5906 | 0.9446 | 0.7128 | yes | no |
| Q8DJS8 | SYD_THEEB | 6, ., 1, ., 1, ., 1, 2 | 0.5675 | 0.9513 | 0.7107 | yes | no |
| B7KB89 | SYD_CYAP7 | 6, ., 1, ., 1, ., 1, 2 | 0.5700 | 0.9402 | 0.7142 | yes | no |
| Q7U3K6 | SYD_SYNPX | 6, ., 1, ., 1, ., 1, 2 | 0.5189 | 0.9491 | 0.7032 | yes | no |
| Q112K0 | SYD_TRIEI | 6, ., 1, ., 1, ., 1, 2 | 0.5976 | 0.9446 | 0.7176 | yes | no |
| B0JNW9 | SYD_MICAN | 6, ., 1, ., 1, ., 1, 2 | 0.5790 | 0.9446 | 0.7176 | yes | no |
| Q3AGF9 | SYD_SYNSC | 6, ., 1, ., 1, ., 1, 2 | 0.5167 | 0.9491 | 0.7044 | yes | no |
| Q8YUB6 | SYD_NOSS1 | 6, ., 1, ., 1, ., 1, 2 | 0.5887 | 0.9402 | 0.7142 | yes | no |
| Q7V9I1 | SYD_PROMA | 6, ., 1, ., 1, ., 1, 2 | 0.5217 | 0.9336 | 0.6975 | yes | no |
| B1WRQ9 | SYD_CYAA5 | 6, ., 1, ., 1, ., 1, 2 | 0.5841 | 0.9402 | 0.7107 | yes | no |
| Q31NM6 | SYD_SYNE7 | 6, ., 1, ., 1, ., 1, 2 | 0.5906 | 0.9446 | 0.7128 | yes | no |
| A2CDX5 | SYD_PROM3 | 6, ., 1, ., 1, ., 1, 2 | 0.5475 | 0.9424 | 0.7029 | yes | no |
| A5GWT2 | SYD_SYNR3 | 6, ., 1, ., 1, ., 1, 2 | 0.5365 | 0.9424 | 0.7052 | yes | no |
| B2J116 | SYD_NOSP7 | 6, ., 1, ., 1, ., 1, 2 | 0.5864 | 0.9402 | 0.7142 | yes | no |
| B8HXQ8 | SYD_CYAP4 | 6, ., 1, ., 1, ., 1, 2 | 0.5930 | 0.9446 | 0.7152 | yes | no |
| Q2JTZ2 | SYD_SYNJA | 6, ., 1, ., 1, ., 1, 2 | 0.5860 | 0.9424 | 0.7088 | yes | no |
| Q9KDG1 | SYD_BACHD | 6, ., 1, ., 1, ., 1, 2 | 0.5057 | 0.9203 | 0.6991 | yes | no |
| Q7NJA4 | SYD_GLOVI | 6, ., 1, ., 1, ., 1, 2 | 0.5437 | 0.9314 | 0.7075 | yes | no |
| B7JX16 | SYD_CYAP8 | 6, ., 1, ., 1, ., 1, 2 | 0.5817 | 0.9402 | 0.7107 | yes | no |
| B1XNY9 | SYD_SYNP2 | 6, ., 1, ., 1, ., 1, 2 | 0.5784 | 0.9402 | 0.7130 | yes | no |
| B0CF01 | SYD_ACAM1 | 6, ., 1, ., 1, ., 1, 2 | 0.5744 | 0.9446 | 0.7176 | yes | no |
| A5GPL9 | SYD_SYNPW | 6, ., 1, ., 1, ., 1, 2 | 0.5211 | 0.9491 | 0.7021 | yes | no |
| Q3MGL3 | SYD_ANAVT | 6, ., 1, ., 1, ., 1, 2 | 0.5911 | 0.9402 | 0.6921 | yes | no |
| A9BDD8 | SYD_PROM4 | 6, ., 1, ., 1, ., 1, 2 | 0.5189 | 0.9491 | 0.7079 | yes | no |
| Q46I98 | SYD_PROMT | 6, ., 1, ., 1, ., 1, 2 | 0.5294 | 0.9623 | 0.7178 | yes | no |
| Q2JMA8 | SYD_SYNJB | 6, ., 1, ., 1, ., 1, 2 | 0.5837 | 0.9424 | 0.7088 | yes | no |
| Q7V3X1 | SYD_PROMM | 6, ., 1, ., 1, ., 1, 2 | 0.5412 | 0.9491 | 0.7079 | yes | no |
| Q3AVS9 | SYD_SYNS9 | 6, ., 1, ., 1, ., 1, 2 | 0.5203 | 0.9424 | 0.6983 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.12 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00090812 | aminoacyl-tRNA ligase (EC-6.1.1.12) (663 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.28.724.1 | histidine-tRNA ligase (EC-6.1.1.21) (441 aa) | • | • | 0.812 | ||||||
 | gw1.XI.1444.1 | aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa) | • | • | 0.606 | ||||||
 | estExt_fgenesh4_pg.C_LG_IX0259 | alanyl-tRNA synthetase (EC-6.1.1.7) (994 aa) | • | • | • | 0.581 | |||||
 | estExt_Genewise1_v1.C_LG_II0778 | hypothetical protein (286 aa) | • | • | • | 0.577 | |||||
 | eugene3.00002342 | methionyl-trna formyltransferase (EC-2.1.2.9) (356 aa) | • | • | • | 0.529 | |||||
 | gw1.I.2958.1 | hypothetical protein (209 aa) | • | • | 0.495 | ||||||
 | estExt_fgenesh4_pg.C_1870028 | hypothetical protein; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could [...] (202 aa) | • | 0.488 | |||||||
 | gw1.XI.1735.1 | hypothetical protein (434 aa) | • | 0.470 | |||||||
 | gw1.X.2264.1 | hypothetical protein (594 aa) | • | • | 0.469 | ||||||
 | estExt_Genewise1_v1.C_LG_II3255 | arginine-tRNA ligase (EC-6.1.1.19) (590 aa) | • | • | 0.467 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 452 | |||
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 0.0 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 0.0 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 0.0 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 1e-173 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 1e-124 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 3e-92 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 3e-88 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 5e-54 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 1e-35 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 6e-31 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 3e-29 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 5e-29 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 8e-28 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 3e-24 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 6e-23 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 2e-22 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 7e-22 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 2e-20 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 5e-18 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 1e-17 | |
| pfam02938 | 94 | pfam02938, GAD, GAD domain | 6e-17 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 7e-17 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 1e-16 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 2e-15 | |
| cd04317 | 135 | cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina | 3e-14 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 1e-13 | |
| COG2269 | 322 | COG2269, COG2269, Truncated, possibly inactive, ly | 2e-13 | |
| PTZ00417 | 585 | PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona | 8e-13 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 1e-11 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 3e-11 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 3e-11 | |
| TIGR00462 | 290 | TIGR00462, genX, EF-P lysine aminoacylase GenX | 4e-11 | |
| PRK02983 | 1094 | PRK02983, lysS, lysyl-tRNA synthetase; Provisional | 2e-10 | |
| PRK09350 | 306 | PRK09350, PRK09350, poxB regulator PoxA; Provision | 5e-09 | |
| pfam00587 | 171 | pfam00587, tRNA-synt_2b, tRNA synthetase class II | 1e-07 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 1e-06 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 9e-04 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 847 bits (2189), Expect = 0.0
Identities = 340/429 (79%), Positives = 377/429 (87%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
MKTG +EV E V +LN V LPFLVTTAD+ KD +KEE+RLRYR LDLRR QMN N+
Sbjct: 145 MKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLR 204
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRH+VVKLIRRYLEDVHGFVEIETP+LSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK
Sbjct: 205 LRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 264
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
QMLMVSGFD+YYQIARCFRDEDLRADRQPEFTQLDMELAFTPL+DML+LNEDLIR++F E
Sbjct: 265 QMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKE 324
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
IK VQLPNPFPRLTYAEAMS+YGSD+PD R+ L+L DVSD+F ES F+VF+ +L+SGG++
Sbjct: 325 IKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVV 384
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
K +CVP G K +NTALKKGDIYNEAIKSGAKGL FLKVLD G +EGI ALV SL P
Sbjct: 385 KAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQA 444
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
EQLL C AGP DLILFA G +SVNKTLDRLR F+A L LID S+HSILW+TDFPMFE
Sbjct: 445 EQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFE 504
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL 420
WN+ EQRLEALHHPFTAPNPEDM DLSSARALAYDMVYNGVEIGGGSLRIY+R+VQQKVL
Sbjct: 505 WNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYNGVEIGGGSLRIYRRDVQQKVL 564
Query: 421 EIVGISPEQ 429
E +G+SPE+
Sbjct: 565 EAIGLSPEE 573
|
Length = 652 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 658 bits (1700), Expect = 0.0
Identities = 235/436 (53%), Positives = 298/436 (68%), Gaps = 20/436 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNI 59
+ TG IEV ++VLN SK LPF + +D V EE+RL+YR LDLRR +M N+
Sbjct: 88 LPTGEIEVLASELEVLNK--SKTLPFPIDDEED----VSEELRLKYRYLDLRRPEMQKNL 141
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF 119
LR KV IR +L+D +GF+EIETP+L++STPEGARDYLVPSRV PG FYALPQSPQLF
Sbjct: 142 KLRSKVTSAIRNFLDD-NGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLF 200
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179
KQ+LMV+GFD+YYQIARCFRDEDLRADRQPEFTQ+D+E++F +D++ L E LIR +F
Sbjct: 201 KQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFK 260
Query: 180 EIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGI 239
E+ V LP PFPR+TYAEAM RYGSD+PD RF L+L DV+D+F +S F+VF+ + GG
Sbjct: 261 EVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGR 320
Query: 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLDAGGVEGIPALVSSLGPS 298
+K + VP GA S K+ D E K GAKGL ++KV + G++G + L
Sbjct: 321 VKAIRVPGGAAQLSR---KQIDELTEFAKIYGAKGLAYIKV-NEDGLKG--PIAKFLSEE 374
Query: 299 NKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPM 358
LL R A DLI F VN L LR + ELGLID K + LW+ DFPM
Sbjct: 375 ELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPM 434
Query: 359 FEWNDSEQRLEALHHPFTAPNPEDMDDL-----SSARALAYDMVYNGVEIGGGSLRIYKR 413
FE+++ E R A HHPFT P ED+D+L ARA AYD+V NG E+GGGS+RI++
Sbjct: 435 FEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGYELGGGSIRIHRP 494
Query: 414 EVQQKVLEIVGISPEQ 429
E+Q+KV EI+GIS E+
Sbjct: 495 EIQEKVFEILGISEEE 510
|
Length = 588 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 589 bits (1520), Expect = 0.0
Identities = 234/434 (53%), Positives = 301/434 (69%), Gaps = 18/434 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
+ TG IEV E ++VLNA LPF + + EEIRL+YR LDLRR +M N+
Sbjct: 88 LPTGEIEVLAEEIEVLNA-SKTLPFQIEDETN----ASEEIRLKYRYLDLRRPEMQKNLK 142
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LR KV K IR +L D GF+EIETP+L++STPEGARD+LVPSRV PG FYALPQSPQLFK
Sbjct: 143 LRSKVTKAIRNFL-DDQGFLEIETPILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFK 201
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMV+GFD+YYQIARCFRDEDLRADRQPEFTQ+D+E++F +D++ L E L+R +F E
Sbjct: 202 QLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKE 261
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+K ++L PFPR+TYAEAM RYGSD+PD RF L+L DV+D+F +S F+VFS++L +GG +
Sbjct: 262 VKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRV 321
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNE-AIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSN 299
K + VP GA S K+ D E A GAKGL ++KV + G++G + L
Sbjct: 322 KAIVVPGGAS-LSR---KQIDELTEFAKIYGAKGLAYIKV-EEDGLKG--PIAKFLSEEI 374
Query: 300 KEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMF 359
E+L+ R A D+I F VNK L LR + ELGLID + LW+ DFP+F
Sbjct: 375 LEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLF 434
Query: 360 EWNDSEQRLEALHHPFTAPNPEDMDDLS----SARALAYDMVYNGVEIGGGSLRIYKREV 415
EW++ E R A HHPFT P PED++ L S RA AYD+V NG E+GGGS+RI+ E+
Sbjct: 435 EWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGYELGGGSIRIHDPEI 494
Query: 416 QQKVLEIVGISPEQ 429
Q+KV EI+GISPE+
Sbjct: 495 QEKVFEILGISPEE 508
|
Length = 585 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 496 bits (1280), Expect = e-173
Identities = 226/433 (52%), Positives = 290/433 (66%), Gaps = 17/433 (3%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL 60
+ TG IE+ E + +LN SK P L+ DA+ EE+RL+YR LDLRR +M +
Sbjct: 86 LDTGEIEILAESITLLNK--SKTPPLIIEKTDAE----EEVRLKYRYLDLRRPEMQQRLK 139
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFK 120
LRHKV K +R +L+ GF+EIETP+L++STPEGARDYLVPSRV G FYALPQSPQLFK
Sbjct: 140 LRHKVTKAVRNFLDQ-QGFLEIETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFK 198
Query: 121 QMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180
Q+LMVSG D+YYQIARCFRDEDLRADRQPEFTQ+DME++F +D++ L E L+ +FLE
Sbjct: 199 QLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVMELIEKLVSHVFLE 258
Query: 181 IKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240
+K + L PFP +TYAEAM RYGSD+PD RF L+L DV+D+F +S F+VFS+ + GG +
Sbjct: 259 VKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRV 318
Query: 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300
K + VP G S ++K+ A + GAKGL +LKV + G + L
Sbjct: 319 KAIRVPGGWAELSRKSIKELR--KFAKEYGAKGLAYLKVNEDG---INSPIKKFLDEKKG 373
Query: 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFE 360
+ LL R A D++LF G V L LR + +LGL+D S LW+ DFPMFE
Sbjct: 374 KILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFE 433
Query: 361 WNDSEQRLEALHHPFTAPNPEDMDDL----SSARALAYDMVYNGVEIGGGSLRIYKREVQ 416
D E RL A HHPFT P ED+++L A A AYD+V NGVE+GGGS+RI+ EVQ
Sbjct: 434 K-DKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGVELGGGSIRIHDPEVQ 492
Query: 417 QKVLEIVGISPEQ 429
+KV EI+GI PE+
Sbjct: 493 KKVFEILGIDPEE 505
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 376 bits (967), Expect = e-124
Identities = 197/442 (44%), Positives = 275/442 (62%), Gaps = 20/442 (4%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPF------LVTTADDAK-DFVKEEIRLRYRCLDLRRQ 53
++TG IEV V + +L A + LPF + A A D V E++RL+YR LD+RR
Sbjct: 92 IETGDIEVFVRELSILAASEA-LPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRP 150
Query: 54 QMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALP 113
M ++ RH+++K R +L D GF+EIETP+L++STPEGARDYLVPSR+ P FYALP
Sbjct: 151 AMQDHLAKRHRIIKCARDFL-DSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALP 209
Query: 114 QSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDL 173
QSPQLFKQ+LM++GF++Y+Q+ARCFRDEDLR +RQPEFTQLD+E +F + + L E+L
Sbjct: 210 QSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEFIFELIEEL 269
Query: 174 IRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDS 233
++F I + LP PFPR+ YAEAM GSDRPD RF L+ D +DIF + + +F
Sbjct: 270 TARMF-AIGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKQI 328
Query: 234 LKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVS 293
L+ GG IK + + ++ S L+ A GAKG+ +++ +AGG++ +V
Sbjct: 329 LQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRA-EAGGLDS--NIVQ 385
Query: 294 SLGPSNKEQLLIRCSAGPSD-LILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILW 352
KE L R A D +I+ A A V L +LR +A LGLI LW
Sbjct: 386 FFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLW 445
Query: 353 ITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD-----DLSSARALAYDMVYNGVEIGGGS 407
ITDFP+FE D + + + HHPFTAP+ ED D +L R+ AYD+V NG E+GGGS
Sbjct: 446 ITDFPLFEATD-DGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVVNGEELGGGS 504
Query: 408 LRIYKREVQQKVLEIVGISPEQ 429
+RI +++Q ++ +G+S E
Sbjct: 505 IRINDKDIQLRIFAALGLSEED 526
|
Length = 706 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 3e-92
Identities = 97/145 (66%), Positives = 124/145 (85%), Gaps = 1/145 (0%)
Query: 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQL 118
+ LR +V+K IR +L++ GFVEIETP+L++STPEGARD+LVPSR+ PG FYALPQSPQL
Sbjct: 1 LRLRSRVIKAIRNFLDE-QGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQL 59
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178
FKQ+LMVSGFD+Y+QIARCFRDEDLRADRQPEFTQ+D+E++F +D++ L E L++ +F
Sbjct: 60 FKQLLMVSGFDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVF 119
Query: 179 LEIKDVQLPNPFPRLTYAEAMSRYG 203
E+ V+L PFPR+TYAEAM RYG
Sbjct: 120 KEVLGVELTTPFPRMTYAEAMERYG 144
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 3e-88
Identities = 115/215 (53%), Positives = 156/215 (72%), Gaps = 22/215 (10%)
Query: 39 EEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEG-ARD 97
EE RL+YR LDLRR +M N+ LR K++K IR +L++ GF+E+ETP+L++STPEG ARD
Sbjct: 2 EETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDE-RGFLEVETPILTKSTPEGGARD 60
Query: 98 YLVPSRVQPGTFYA----LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQP-EFT 152
+LVPS FYA LPQSPQL+KQ+LMV+GFD+ +QIA CFRDEDLR DR P EFT
Sbjct: 61 FLVPS-----KFYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAPCFRDEDLRTDRHPPEFT 115
Query: 153 QLDMELAFTPLDDMLRLNEDLIRKIFLEIK---------DVQLPNPFPRLTYAEAMSRYG 203
QLD+E++F +D++ L EDLI+ +F ++ ++LP FPR+TYAEA+ RYG
Sbjct: 116 QLDLEMSFVDYEDVMDLTEDLIKYVFKKVLGKREELELLGIELP-EFPRITYAEAIERYG 174
Query: 204 SDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGG 238
SD+PD RF L+L DV++IF S F+VF+++
Sbjct: 175 SDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVVD 209
|
Length = 345 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 5e-54
Identities = 69/156 (44%), Positives = 95/156 (60%), Gaps = 13/156 (8%)
Query: 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGARDYLVPSRVQPGTFYALPQSPQ 117
+R K++K IR +++D GF+E+ETP+L + T GAR +LV G Y L SPQ
Sbjct: 1 FKVRSKIIKAIRDFMDD-RGFLEVETPMLQKITGGAGARPFLVKYNA-LGLDYYLRISPQ 58
Query: 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177
LFK+ LMV G D+ ++I R FR+EDLRA QPEFT +D+E+AF +D++ L E L+R +
Sbjct: 59 LFKKRLMVGGLDRVFEINRNFRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHL 118
Query: 178 FLEIK----------DVQLPNPFPRLTYAEAMSRYG 203
E+ PFPRLTY EA+ RYG
Sbjct: 119 AREVLGVTAVTYGFELEDFGLPFPRLTYREALERYG 154
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-35
Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 4/85 (4%)
Query: 349 SILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLS----SARALAYDMVYNGVEIG 404
LWI DFP+FEW++ E RL + HHPFTAP ED+D L ARA AYD+V NGVE+G
Sbjct: 146 KFLWIVDFPLFEWDEEEGRLVSAHHPFTAPKEEDLDLLEKDPEDARAQAYDLVLNGVELG 205
Query: 405 GGSLRIYKREVQQKVLEIVGISPEQ 429
GGS+RI+ ++Q+KV EI+G+S E+
Sbjct: 206 GGSIRIHDPDIQEKVFEILGLSEEE 230
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 6e-31
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
E+ VE ++VL P D K+ + E L R LDLR ++ +R +
Sbjct: 87 FELQVEKIEVLGEADPPYPI------DKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSI 140
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMV 125
++ IR + + +GF E+ TP+++ S EG + L Y L QSPQL+K+ L
Sbjct: 141 LRAIREFFYE-NGFTEVHTPIITASATEGGGE-LFKVDYFDKEAY-LTQSPQLYKEALAA 197
Query: 126 SGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIF------ 178
+ ++ + I FR E R EF LD E+AF L+D++ L E+LI+ +F
Sbjct: 198 A-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEE 256
Query: 179 ----LEIKDVQLP-------NPFPRLTYAEA 198
LE PFPR+TY EA
Sbjct: 257 CADELEFLGRDNSELKRPESAPFPRITYKEA 287
|
Length = 435 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-29
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 35/218 (16%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEI--RLRYRCLDLRRQQMNHNI 59
G EV E ++VLN LP ++ V E+ RL R LDLRR ++
Sbjct: 84 PGGV-EVIPEEIEVLNKAEEPLPLDIS------GKVLAELDTRLDNRFLDLRRPRVRAIF 136
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQS 115
+R +V++ R +L + +GF EI TP + S EG + + P ++ L QS
Sbjct: 137 KIRSEVLRAFREFLYE-NGFTEIFTPKIVASGTEGG------AELFPIDYFEKEAYLAQS 189
Query: 116 PQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLD-DMLRLNEDL 173
PQL+KQM++ +GF++ ++I FR E+ R E+T +D+E+ F D++ L E+L
Sbjct: 190 PQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENL 249
Query: 174 IRKIF----------LEIKDVQLP---NPFPRLTYAEA 198
+R ++ LE+ ++LP P PR+TY EA
Sbjct: 250 LRYMYEDVAENCEKELELLGIELPVPETPIPRITYDEA 287
|
Length = 437 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-29
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 33/216 (15%)
Query: 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEI--RLRYRCLDLRRQQMNHNILL 61
G E+ ++V+N + LP T + V E+ RL YR LDLRR + +
Sbjct: 82 GGFEIIPTKIEVINEAKEPLPLDPT------EKVPAELDTRLDYRFLDLRRPTVQAIFRI 135
Query: 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQ 117
R V++ +R +L + GF+E+ TP L S EG + + P T++ L QSPQ
Sbjct: 136 RSGVLESVREFLAE-EGFIEVHTPKLVASATEGG------TELFPITYFEREAFLGQSPQ 188
Query: 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRK 176
L+KQ LM +GF++ Y+I FR E+ R E T +D+E+AF D++ + E+L+ +
Sbjct: 189 LYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVR 248
Query: 177 IF-------------LEIKDVQLPNPFPRLTYAEAM 199
+F LE K + F RLTY EA+
Sbjct: 249 VFEDVPERCAHQLETLEFKLEKPEGKFVRLTYDEAI 284
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 8e-28
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 32/182 (17%)
Query: 40 EIRLRYRCLDLRRQQMNHNIL-LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDY 98
E L R LDLR I +R +V++ R +L + +GF E+ TP ++ + EG
Sbjct: 5 ETLLDNRHLDLRTP-KVQAIFRIRSEVLRAFREFLRE-NGFTEVHTPKITSTDTEG---- 58
Query: 99 LVPSRVQPGTFYA----LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQ 153
+ + +++ L QSPQL+K+M +++ ++ Y+I FR E R EF
Sbjct: 59 --GAELFKVSYFGKPAYLAQSPQLYKEM-LIAALERVYEIGPVFRAEKSNTRRHLSEFWM 115
Query: 154 LDMELAF-TPLDDMLRLNEDLIRKIF----------------LEIKDVQLPNPFPRLTYA 196
L+ E+AF ++++ L E+LI+ IF L + ++ PFPR+TY
Sbjct: 116 LEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQLNRELLKPLEPFPRITYD 175
Query: 197 EA 198
EA
Sbjct: 176 EA 177
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 35/259 (13%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMN----H 57
KTG + V V +Q+L LP D +E R R R LDL +N
Sbjct: 120 KTGELSVHVTELQILTKALRPLP------DKFHGLTDQETRYRQRYLDL---IVNPDSRQ 170
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQS 115
L+R K++K IRR+L+D GF+E+ETP+L P GA R ++ Y L +
Sbjct: 171 TFLVRSKIIKAIRRFLDD-RGFIEVETPMLQ-VIPGGANARPFITHHNALDMDLY-LRIA 227
Query: 116 PQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIR 175
P+L+ + L+V GF+K Y+I R FR+E + PEFT ++ A+ +D++ L E+L +
Sbjct: 228 PELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFK 287
Query: 176 KIFLEI----------KDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLES 225
+ E+ ++ PF R+T EA+ +Y +T +
Sbjct: 288 FLAQELLGTTKITYGELEIDFKKPFKRITMVEAIKKY---DMETGIDFDDLKDFETAKAL 344
Query: 226 PFR----VFSDSLKSGGII 240
+ V SL G I+
Sbjct: 345 AKKIGIEVAEKSLTLGHIL 363
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 6e-23
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 17/106 (16%)
Query: 324 SVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDM 383
V+K L LR+ E L D K + +++TDFP+FE HPF P ED
Sbjct: 207 VVDKALGALRSE-LGEENLGDKDKDNPVFVTDFPLFE------------HPFYMPKDEDP 253
Query: 384 DDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQ 429
A +D+V NG EIGGGS+RI+ E Q+K E +G+ PE+
Sbjct: 254 ----PGLAERFDLVLNGGEIGGGSIRIHDPEEQRKRFEELGLDPEE 295
|
Length = 345 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-22
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 24/227 (10%)
Query: 2 KTGFIEVAVEHVQVLN-AVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDL-RRQQMNHNI 59
KTG + V+VE +++L+ ++R LP + +EIR R R LDL +
Sbjct: 128 KTGELSVSVEELRLLSKSLRP-LP------EKFHGLTDKEIRYRQRYLDLIVNPESRQTF 180
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQ 117
+ R K+++ IR +L+D GF+E+ETP+L P GA R ++ Y L +P+
Sbjct: 181 IKRSKIIRAIREFLDD-RGFLEVETPMLQ-PIPGGAAARPFITHHNALDMDLY-LRIAPE 237
Query: 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177
L+ + L+V GF++ ++I R FR+E + PEFT L+ A+ +D++ L E+LI+++
Sbjct: 238 LYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKEL 297
Query: 178 FLEI-KDVQLPN---------PFPRLTYAEAMSRYGSDRPDTRFSLQ 214
E+ ++ PF R+T +A+ Y D F +
Sbjct: 298 AKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDDLFDDE 344
|
Length = 502 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 7e-22
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 40/178 (22%)
Query: 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA-------------RD-YLVPS 102
++R K++ IR++L+D GF+E+ETP+L GA D YL
Sbjct: 6 QTFIVRSKIISYIRKFLDD-RGFLEVETPMLQ-PIAGGAAARPFITHHNALDMDLYL--- 60
Query: 103 RVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162
R+ +P+L+ + L+V GF++ Y+I R FR+E + PEFT ++ A+
Sbjct: 61 RI----------APELYLKRLIVGGFERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYAD 110
Query: 163 LDDMLRLNEDLIRKIFLEI----------KDVQLPNPFPRLTYAEAMSRY-GSDRPDT 209
+DM+ L EDL + +I K++ PF R+T +A+ G D P+
Sbjct: 111 YNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALKEKTGIDFPEL 168
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 93.2 bits (233), Expect = 2e-20
Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 52/230 (22%)
Query: 2 KTGFIEVAVEHVQVLN-AVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDL-RRQQMNHNI 59
KTG + V + +L ++R LP D E R R R +DL +
Sbjct: 120 KTGELSVKATELTLLTKSLRP-LP------DKFHGLTDVETRYRQRYVDLIVNPESRETF 172
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEG--AR---------D---YLVPSRVQ 105
R K++ IRR+L++ GF+E+ETP+L G AR D YL R+
Sbjct: 173 RKRSKIISAIRRFLDN-RGFLEVETPMLQ-PIAGGAAARPFITHHNALDIDLYL---RI- 226
Query: 106 PGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL--AFTPL 163
+P+L+ + L+V GF++ Y+I R FR+E + PEFT +E A+
Sbjct: 227 ---------APELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTM--LEFYQAYADY 275
Query: 164 DDMLRLNEDLIRKIFLEI----------KDVQLPNPFPRLTYAEAMSRYG 203
+DM+ L E+LIR + + ++ PF RLT +A+ Y
Sbjct: 276 NDMMDLTEELIRHLAQAVLGTTKVTYQGTEIDFGPPFKRLTMVDAIKEYT 325
|
Length = 491 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 5e-18
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 33/227 (14%)
Query: 26 LVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETP 85
L + ++F++ + + ++ + ++ +++ R +L+ GFVE+ P
Sbjct: 3 LERYPKEYEEFLRMSWKH------ISSEKYRKVLKVQSSILRYTREFLDG-RGFVEVLPP 55
Query: 86 VLSRSTPEGARD-----YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRD 140
++S ST S G Y L S L KQ L + K + ++ FR
Sbjct: 56 IISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQ-LALRMLGKIFYLSPNFRL 114
Query: 141 EDLRADRQP---EFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV----------QLP 187
E + D EFTQLD+E+ LD+++ L EDLI+ + E+ + LP
Sbjct: 115 EPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFGRDLP 174
Query: 188 ---NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFL----ESPF 227
PF R+T+ EA+ + +L + L E PF
Sbjct: 175 HLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLSEHFEEPF 221
|
Length = 335 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 84.7 bits (209), Expect = 1e-17
Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 25/224 (11%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDL-RRQQMNHNIL 60
+TG + + +++L LP D +E+R R R LDL + +
Sbjct: 132 QTGELSIHCTELRLLTKALRPLP------DKFHGLQDQEVRYRQRYLDLIANDKSRQTFV 185
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQL 118
+R K++ IR+++ GF+E+ETP++ + P GA R ++ Y L +P+L
Sbjct: 186 VRSKILAAIRQFMV-ARGFMEVETPMM-QVIPGGASARPFITHHNALDLDMY-LRIAPEL 242
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178
+ + L+V GF++ ++I R FR+E + PEFT +++ +A+ D++ L E L R +
Sbjct: 243 YLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLA 302
Query: 179 LEI-KDVQLP---------NPFPRLTYAEAMSRYGSDRPDTRFS 212
E+ ++ PF +LT EA+ +Y RP+T +
Sbjct: 303 QEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKY---RPETDMA 343
|
Length = 505 |
| >gnl|CDD|145868 pfam02938, GAD, GAD domain | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-17
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 230 FSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIP 289
FS++LK GG +K LCVP GA S + + + A + GAKGL ++KV G I
Sbjct: 1 FSEALKKGGSVKALCVPGGAG-LSRKQIDELE--RFAKEFGAKGLAWIKVEGGGHTGPIA 57
Query: 290 ALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTL 329
++ E+LL R A D++LF VNK L
Sbjct: 58 KFLTE---EEVEELLERVGAQNGDILLFVADKEKVVNKAL 94
|
This domain is found in some members of the GatB and aspartyl tRNA synthetases. Length = 94 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 7e-17
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 46/186 (24%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E R R R LDL N + R K++ IRR+L+D GF+E+ETP+L+ GA
Sbjct: 209 ETRYRQRYLDL---IANPEVRDIFRTRAKIISYIRRFLDD-RGFLEVETPMLN-MIAGGA 263
Query: 96 -------------RD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
D YL R+ + +L + L+V GF++ Y+I R FR+E
Sbjct: 264 AARPFVTHHNDLNMDLYL---RI----------ATELHLKRLVVGGFERVYEIGRQFRNE 310
Query: 142 DLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK----------DVQLPNPFP 191
+ PEFT + A+ +DM+ L E+++ + E+ ++ PF
Sbjct: 311 GISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFR 370
Query: 192 RLTYAE 197
R++
Sbjct: 371 RISMIS 376
|
Length = 553 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-16
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 23/159 (14%)
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARD----YLVPSRVQPGTFYALPQSP 116
+R K+ + +RR++ + GF E+ETP++ R L+P + L +
Sbjct: 1 IRSKIEQKLRRFMAE-LGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTL 59
Query: 117 QLFKQMLMVS----GFDKYYQIARCFRDEDLRAD--RQPEFTQLDMELAFTPLDD----- 165
+ L VS + +I FR+E R R EFTQL+ E+ ++
Sbjct: 60 EPGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFE 119
Query: 166 -MLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYG 203
++ L E+L+R + +++ + S G
Sbjct: 120 ELIELTEELLRALGIKL------DIVFVEKTPGEFSPGG 152
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 66/231 (28%), Positives = 93/231 (40%), Gaps = 45/231 (19%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLV-----------TTADDAKDFVK--EEIRLRYRCLDLRR 52
+E+ V + ++ + LPF V + V+ ++ RL R LDLR
Sbjct: 159 VEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRT 218
Query: 53 QQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR-----DYLVPSRVQPG 107
++ +V L R +L GFVEI TP L EG DY G
Sbjct: 219 PANQAIFRIQSQVCNLFREFLLS-KGFVEIHTPKLIAGASEGGSAVFRLDYK-------G 270
Query: 108 TFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTP-LDD 165
L QSPQL KQM + F + ++I FR ED R EFT LD+E+ +
Sbjct: 271 QPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSE 330
Query: 166 MLRLNEDLIRKIF----------LEIKDVQLP-------NPFPRLTYAEAM 199
+L + ++L IF LE Q P RLT+AE +
Sbjct: 331 VLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGI 381
|
Length = 530 |
| >gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 3e-14
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQM 55
+ TG IEV ++VLN + LPF + + V EE+RL+YR LDLRR +M
Sbjct: 86 LPTGEIEVVASELEVLNKAK-TLPFEIDDDVN----VSEELRLKYRYLDLRRPKM 135
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS. Length = 135 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVT---TADDAKDFVK---EEIRLRYRCLDLRRQQ 54
M+ G + VA + +L+ P++ T + + F +++ RYR D+
Sbjct: 174 MQRGELSVAASRMLILS------PYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNP 227
Query: 55 -MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVL-SRSTPEGARDYLVPSRVQPGTFYAL 112
+ I RH +++ +R Y + + FVE+ETPVL + ++ A+ ++ + L
Sbjct: 228 CVIETIKKRHVMLQALRDYFNERN-FVEVETPVLHTVASGANAKSFVTHHNANAMDLF-L 285
Query: 113 PQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNED 172
+P+L + +V G ++ Y+I + FR+ED PEFT + A+ +D++ + ED
Sbjct: 286 RVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYEDLMPMTED 345
Query: 173 LIRKIFLEI-----------------KDVQLPNPFPRLT-YAEAMSRYGSDRP 207
+ R++ + + V L PF R++ Y E G + P
Sbjct: 346 IFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFP 398
|
Length = 659 |
| >gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-PEG-----ARDYLVPSRVQPGTFYA 111
N+L R ++ IRR+ + G +E+ETP LS + + ++L P + +
Sbjct: 15 NLLKRAAIIAAIRRFFAE-RGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLW- 72
Query: 112 LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNE 171
L SP+ + L+ +G +Q+ + FR+E++ PEFT L+ + D RL
Sbjct: 73 LHTSPEYHMKRLLAAGSGPIFQLGKVFRNEEMGRLHNPEFTMLEW---YRVGCDYYRLMN 129
Query: 172 DLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY 202
+ + + + + RL+Y EA RY
Sbjct: 130 E-VDDLLQLVLEC---VEAERLSYQEAFLRY 156
|
Length = 322 |
| >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 8e-13
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 37/207 (17%)
Query: 40 EIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSR-STPEGARD 97
EIR R R LDL + + R K++ +R +L D GF+E+ETP ++ + AR
Sbjct: 233 EIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLND-RGFIEVETPTMNLVAGGANARP 291
Query: 98 YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDME 157
++ Y L + +L +ML+V G DK Y+I + FR+E + PEFT +
Sbjct: 292 FITHHNDLDLDLY-LRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFY 350
Query: 158 LAFTPLDDMLRLNEDLIRKIFLEI---------KD--------VQLPNPFPRLTYAEAMS 200
A+ D+++ +ED ++ + + KD + P+P+++ E
Sbjct: 351 WAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVE--- 407
Query: 201 RYGSDRPDTRFSLQLNDVSDIFLESPF 227
+L +++ LE PF
Sbjct: 408 -------------ELEKLTNTKLEQPF 421
|
Length = 585 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 19/214 (8%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTA----DDAKDFVKEEIRLRYRCLDLRRQQMNHNILL 61
IE+ V+ + + LPF + A D V + RL R +DLR L
Sbjct: 156 IELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215
Query: 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQ 121
+ +V + R++L D F EI +P + + EG + F L QSPQL+KQ
Sbjct: 216 QSRVCQYFRQFLID-SDFCEIHSPKIINAPSEGGANVFKLEYFN--RFAYLAQSPQLYKQ 272
Query: 122 MLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTP-LDDMLRLNEDLIRKIF- 178
M++ + +++ FR E+ R EF LD+E+ ++L L E L IF
Sbjct: 273 MVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFE 332
Query: 179 ------LEIKDVQLPNPFPRLTY---AEAMSRYG 203
E+K V PF L + E M G
Sbjct: 333 RLATHTKELKAVCQQYPFEPLVWKLTPERMKELG 366
|
Length = 550 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 351 LWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRI 410
L++TD+P +H P +P+ + A A+D+ NGVE+G GS R+
Sbjct: 157 LFLTDYPAE-----------MHSPLASPHDVN-----PEIADAFDLFINGVEVGNGSSRL 200
Query: 411 YKREVQQKVLEIVGISPEQFIF 432
+ ++Q +V + GI+ E +
Sbjct: 201 HDPDIQAEVFQEQGINKEAGME 222
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 40/229 (17%)
Query: 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNIL- 60
K +E+ V+ ++V+ + + + + +F+++ LR R L ++
Sbjct: 85 KGQPVELQVKKIEVVGEAEPD-DYPLQKKEHSLEFLRDIAHLRLRTNTL------GAVMR 137
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGT---FYA----LP 113
+R+ + + I RY ++ +GF + P+L+ + EGA + S F+ L
Sbjct: 138 VRNALSQAIHRYFQE-NGFTWVSPPILTSNDCEGAGELFRVSTGNIDFSQDFFGKEAYLT 196
Query: 114 QSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNED 172
S QL+ + ++ K Y FR E R EF ++ E+AF L+D+L+L E
Sbjct: 197 VSGQLYLETYALA-LSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAET 255
Query: 173 LIRKI-------------FLEI---KDVQ------LPNPFPRLTYAEAM 199
LI+ I FLE KD+ + N F R+TY +A+
Sbjct: 256 LIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAI 304
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 4e-11
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 78 GFVEIETPVLSRST-PEGARDYLVPSRVQPG----TFYALPQSPQLFKQMLMVSGFDKYY 132
G +E+ETP+LS + + D V P Y L SP+ + L+ +G +
Sbjct: 6 GVLEVETPLLSPAPVTDPHLDAFATEFVGPDGQGRPLY-LQTSPEYAMKRLLAAGSGPIF 64
Query: 133 QIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPR 192
QI + FR+ + PEFT L+ D++ E L++++ P R
Sbjct: 65 QICKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELL-----GDPFAPAER 119
Query: 193 LTYAEAMSRY 202
L+Y EA RY
Sbjct: 120 LSYQEAFLRY 129
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown [Unknown function, General]. Length = 290 |
| >gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 30/160 (18%)
Query: 31 DDAKDFVKEEIRLRYRCLDL--RRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLS 88
D K E R+R R LDL + + + R VV+ +R L GF+E+ETP+L
Sbjct: 741 DKWKGLTDPEARVRQRYLDLAVNPEARD-LLRARSAVVRAVRETLVA-RGFLEVETPILQ 798
Query: 89 R----------STPEGARD---YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIA 135
+ T A D YL R+ +P+L+ + L V G ++ +++
Sbjct: 799 QVHGGANARPFVTHINAYDMDLYL---RI----------APELYLKRLCVGGVERVFELG 845
Query: 136 RCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIR 175
R FR+E + A PEFT L+ A D M L +LI+
Sbjct: 846 RNFRNEGVDATHNPEFTLLEAYQAHADYDTMRDLTRELIQ 885
|
Length = 1094 |
| >gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 5e-09
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR------DYLVPSRVQPGTFYA 111
N+L R K++ IRR+ D G +E+ETP+LS++T ++ P Q T +
Sbjct: 4 NLLKRAKIIAEIRRFFAD-RGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLW- 61
Query: 112 LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNE 171
L SP+ + L+ +G +QI + FR+E+ PEFT L+ + P DM RL
Sbjct: 62 LMTSPEYHMKRLLAAGSGPIFQICKSFRNEEAGRYHNPEFTMLEW---YRPHYDMYRLMN 118
Query: 172 DLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY 202
+ + + ++ D P L+Y +A RY
Sbjct: 119 E-VDDLLQQVLDC---EPAESLSYQQAFLRY 145
|
Length = 306 |
| >gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 30/150 (20%)
Query: 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRS--------TPEGARDYLVPSRVQPGTFYAL 112
LR+ + IR L+ +G+ E++TP+L + + + + + G L
Sbjct: 1 LRNALENFIRELLKR-YGYQEVDTPILEPKELWEGSGHWDDYFEEEMYKFKDRGGEELYL 59
Query: 113 PQSP-------QLFKQMLMVSGFD---KYYQIARCFRDE--DLR-ADRQPEFTQLDMELA 159
P +LFK ++ S + K YQI CFR E R R EFTQ+D E+
Sbjct: 60 --RPTAEVGITRLFKNEIL-SYRELPLKLYQIGPCFRYEARPRRGLGRVREFTQVDAEIF 116
Query: 160 FTPLDDMLRLNE--DLIRKIFLEIKDVQLP 187
TP L E L +I +D+ LP
Sbjct: 117 GTPEQSEEELEELLKLAEEIL---QDLGLP 143
|
Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 171 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 1e-06
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 52/177 (29%)
Query: 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQ 121
R+ + + I + + +GFV ++TP+++ S EGA G + + F +
Sbjct: 136 RNTLAQAIHEFFNE-NGFVWVDTPIITASDCEGA-----------GELFRVTTLDLDFSK 183
Query: 122 -------MLMVSG----------FDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPL 163
L VSG K Y FR E+ R EF ++ E+AF L
Sbjct: 184 DFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADL 243
Query: 164 DDMLRLNEDLIRKI-----------------FLEIKDVQ-----LPNPFPRLTYAEA 198
+D + L E++++ + ++ D++ + +PFPR+TY EA
Sbjct: 244 EDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEA 300
|
Length = 450 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 9e-04
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 18/81 (22%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
ITD+P E+R PF T P+ +D ++S ++D+++ G+EI G RI+
Sbjct: 327 ITDYPS------EKR------PFYTMPDEDD-PEIS----KSFDLLFRGLEITSGGQRIH 369
Query: 412 KREVQQKVLEIVGISPEQFIF 432
+ ++ + ++ G++PE F F
Sbjct: 370 RYDMLVESIKEKGLNPESFEF 390
|
Length = 437 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 99.97 | |
| PRK04028 | 630 | glutamyl-tRNA(Gln) amidotransferase subunit E; Val | 99.67 | |
| PF02938 | 95 | GAD: GAD domain; InterPro: IPR004115 This entry re | 99.56 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.24 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.06 | |
| TIGR00134 | 620 | gatE_arch glutamyl-tRNA(Gln) amidotransferase, sub | 98.88 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 98.8 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.66 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 98.65 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 98.54 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.47 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 98.47 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.46 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.42 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.42 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 98.34 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 98.32 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.31 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 98.27 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 98.27 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 98.26 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 98.25 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 98.25 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 98.21 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 98.2 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 98.18 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 98.15 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.13 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 98.05 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 98.05 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.01 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 98.01 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 98.01 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 98.0 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.99 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.99 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.99 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.97 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 97.96 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.95 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.95 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 97.95 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.93 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 97.91 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.88 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.86 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.85 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 97.84 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.79 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.78 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.72 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.7 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.67 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 97.49 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.44 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 97.32 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 97.22 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 97.14 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 96.97 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.93 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 96.85 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 96.84 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 96.74 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 96.68 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 96.64 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 96.6 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 96.56 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 96.07 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 95.49 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 95.45 | |
| COG2511 | 631 | GatE Archaeal Glu-tRNAGln amidotransferase subunit | 94.78 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 94.23 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 94.16 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 93.84 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 90.16 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 89.91 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 89.6 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 87.14 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 87.01 | |
| PLN02734 | 684 | glycyl-tRNA synthetase | 86.55 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 83.09 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 82.91 | |
| KOG2509 | 455 | consensus Seryl-tRNA synthetase [Translation, ribo | 81.64 | |
| PRK14894 | 539 | glycyl-tRNA synthetase; Provisional | 80.07 |
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-143 Score=1110.05 Aligned_cols=437 Identities=53% Similarity=0.907 Sum_probs=423.1
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
|+||+|||++++|+|||.| .++||++.+.. +++|++||+|||||||++.|+.++++||+++.++|+||.+ +||+
T Consensus 88 l~TGeiEv~a~~i~vln~s-~~lPf~i~d~~----~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~-~gF~ 161 (585)
T COG0173 88 LPTGEIEVLAEEIEVLNAS-KTLPFQIEDET----NASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDD-QGFL 161 (585)
T ss_pred CCcceEEEEeeeEEEEecC-CCCCcCCCCCC----CcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhh-cCCe
Confidence 6899999999999999998 58999997642 6899999999999999999999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++|||||||+|+||+|.++|+||+||||||+|||+||++|++|||||+|||||||+|+||||||||||+||||
T Consensus 162 EiETPiLtkSTPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF 241 (585)
T COG0173 162 EIETPILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSF 241 (585)
T ss_pred EeecCccccCCCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++.+|||+++|+|++++|+++.|++++.||+||||+|||++|||||||+||++++.|+++++.+++|++|.+.+..++.|
T Consensus 242 ~~~edv~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v 321 (585)
T COG0173 242 VDEEDVMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRV 321 (585)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCccCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcC
Q 043787 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVG 320 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~ 320 (452)
+++.+|++ ..+||++++ ++.++++.+||+||+|+++.++| + .||++|+++++..++|.+++++++||+|||+||
T Consensus 322 ~ai~vp~~-~~~sRk~id--~~~~~ak~~gakGLa~ikv~~~~-~--~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~ 395 (585)
T COG0173 322 KAIVVPGG-ASLSRKQID--ELTEFAKIYGAKGLAYIKVEEDG-L--KGPIAKFLSEEILEELIERLGAEDGDIIFFVAD 395 (585)
T ss_pred EEEEcCCc-cccCHHHHH--HHHHHHHHcCCCceEEEEEecCC-c--cchHHHhcCHHHHHHHHHHhCCCCCCEEEEecC
Confidence 99999998 579999997 46789999999999999999887 4 689999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----Chhhhhhceeee
Q 043787 321 HPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSARALAYDM 396 (452)
Q Consensus 321 ~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~a~~YDL 396 (452)
+..+++++||+||+.++++++|++++.|+||||||||||||+|+++||.|+|||||||+++|.+ +|++++|.+|||
T Consensus 396 ~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDl 475 (585)
T COG0173 396 KKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDL 475 (585)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccE
Confidence 9999999999999999999999999999999999999999999999999999999999999987 578899999999
Q ss_pred eecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 397 VYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 397 VlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
||||+||||||||||++++|++||++||+++++++.+|||||+|++|| +|||-
T Consensus 476 VlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yG---aPPHg 528 (585)
T COG0173 476 VLNGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYG---APPHG 528 (585)
T ss_pred EeccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCCc
Confidence 999999999999999999999999999999999999999999999999 99993
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-125 Score=1011.13 Aligned_cols=448 Identities=76% Similarity=1.199 Sum_probs=415.6
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++||++||.+++|+|||+|..++||.+.+..+.....++++|++|||||||++.++++|++||++++++|+||.+++||+
T Consensus 145 ~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl~~~~gFi 224 (652)
T PLN02903 145 MKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFV 224 (652)
T ss_pred CCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999999986689998764221112478999999999999999999999999999999999997338999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++++||||++|++|++..+|.+|||+||||+|||+||++|++||||||||||||+++++||||||||||||+|
T Consensus 225 EVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf 304 (652)
T PLN02903 225 EIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAF 304 (652)
T ss_pred EEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecC
Confidence 99999999999999999999998778999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++++|+|+++|+||+++++++++++++.||+||||+|||++||+||||+||++++.|+++++.+++|.+|...+++++.|
T Consensus 305 ~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v 384 (652)
T PLN02903 305 TPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVV 384 (652)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeE
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999988889999
Q ss_pred EEEEccCCCcccchhhhcc-CcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEc
Q 043787 241 KVLCVPSGAKTYSNTALKK-GDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAV 319 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~-~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a 319 (452)
.++++|++.+ +++++++. ++.++...+.|++|++|+++.++|++.+.+++.|+++++..++|.+.+++++||+|||+|
T Consensus 385 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a 463 (652)
T PLN02903 385 KAICVPDGKK-ISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAA 463 (652)
T ss_pred EEEEeCCCCc-cchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEEC
Confidence 9999998654 88877733 234554444599999999997776554334899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeec
Q 043787 320 GHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYN 399 (452)
Q Consensus 320 ~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlN 399 (452)
|+...++++||+||+++|+.++|++++.|+|||||||||||||++++||+|+|||||||+++|++++.+++|+|||||||
T Consensus 464 ~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlN 543 (652)
T PLN02903 464 GPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYN 543 (652)
T ss_pred CcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 400 GVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 400 G~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
|+|||||||||||+++|+++|+.+|+++++++.+|+|||+||+|| ||||-
T Consensus 544 G~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG---~Pphg 593 (652)
T PLN02903 544 GVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMG---APPHG 593 (652)
T ss_pred ceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCCC
Confidence 999999999999999999999999999999999999999999999 99993
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-120 Score=984.37 Aligned_cols=440 Identities=44% Similarity=0.766 Sum_probs=407.3
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccc-------cCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHh
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADD-------AKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLE 74 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~-------~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~ 74 (452)
+||++||.+++++|||+|. ++||.+.+... ....+++++|++|||||||++.++++|++||++++++|+||.
T Consensus 93 ~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~fl~ 171 (706)
T PRK12820 93 ETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLD 171 (706)
T ss_pred CCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999984 78887654210 001357999999999999999999999999999999999999
Q ss_pred hcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeee
Q 043787 75 DVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQL 154 (452)
Q Consensus 75 ~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqL 154 (452)
+ +||+||+||+|++++||||++|++|++..++.+|+|+||||+|||+||++|++||||||||||||+++++||||||||
T Consensus 172 ~-~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~L 250 (706)
T PRK12820 172 S-RGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQL 250 (706)
T ss_pred H-CCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCcccccc
Confidence 8 999999999999999999999999988778899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccc
Q 043787 155 DMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSL 234 (452)
Q Consensus 155 e~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i 234 (452)
||||+|++++++|+++|+||+++|+ ..+++++.||+||||.|||++||+||||+||++++.|+++++.+++|.+|...+
T Consensus 251 E~E~af~d~~dvm~l~E~li~~v~~-~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~ 329 (706)
T PRK12820 251 DIEASFIDEEFIFELIEELTARMFA-IGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKQIL 329 (706)
T ss_pred ceeeccCCHHHHHHHHHHHHHHHHH-hcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEEEEHHHHhccCCchhhhhhh
Confidence 9999999999999999999999996 556788899999999999999999999999999999999999999999999988
Q ss_pred cCCCeEEEEEccCCCcccchhhhccCcch-HHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCc
Q 043787 235 KSGGIIKVLCVPSGAKTYSNTALKKGDIY-NEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSD 313 (452)
Q Consensus 235 ~~~~~v~~~~~p~~~~~~s~~~~~~~~~~-~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd 313 (452)
+.||.|+++++|++...+|+++++. .+. +.++.+|++|++|+++.+++ + .|++.|++++++.++|.+.+++++||
T Consensus 330 ~~~g~v~~i~~~~~~~~~s~~~~~~-~~~~~~~~~~g~~gl~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~gd 405 (706)
T PRK12820 330 QRGGRIKGINIKGQSEKLSKNVLQN-EYAKEIAPSFGAKGMTWMRAEAGG-L--DSNIVQFFSADEKEALKRRFHAEDGD 405 (706)
T ss_pred ccCCeEEEEEeCCCccccCHHHHHH-HHHHHHHHHcCCCceEEEEECCCC-c--CCchhccCCHHHHHHHHHHhCCCCCC
Confidence 8999999999998766699988752 133 67888999999999985543 3 57999999999999999999999999
Q ss_pred EEEEEcCCc-hhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc-----Chh
Q 043787 314 LILFAVGHP-ASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD-----DLS 387 (452)
Q Consensus 314 ~~~~~a~~~-~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~-----~~~ 387 (452)
+|||+|+++ ..++++||+||+++|+.++|++++.|+|+||||||||||+++ |||+|+|||||||+++|++ +|.
T Consensus 406 ~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e-~~~~a~HHPFT~p~~~d~~~l~~~~p~ 484 (706)
T PRK12820 406 VIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDD-GGVTSSHHPFTAPDREDFDPGDIEELL 484 (706)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCC-CCeeeeeCCCCCcCccChhhhccCChH
Confidence 999999976 679999999999999999999999999999999999999997 9999999999999999985 456
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+|||+||||||||+|||||||||||+++|++||+.+|+++++++.+|||||+||+|| ||||-
T Consensus 485 ~~~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G---~pphg 546 (706)
T PRK12820 485 DLRSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFA---APPHG 546 (706)
T ss_pred HhhhheeeEEecceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCCC
Confidence 899999999999999999999999999999999999999999999999999999999 99993
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-119 Score=967.38 Aligned_cols=438 Identities=53% Similarity=0.889 Sum_probs=410.1
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++||++||.|++|+|||+|. ++|+.+.+.. .+++++|++|||||+|++.+++++++||++++++|+||.+ +||+
T Consensus 88 ~~~g~~El~~~~i~il~~a~-~lP~~~~~~~----~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~-~gFi 161 (588)
T PRK00476 88 LPTGEIEVLASELEVLNKSK-TLPFPIDDEE----DVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDD-NGFL 161 (588)
T ss_pred CCCCcEEEEEeEEEEEecCC-CCCCcccccc----cCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 45899999999999999996 8999875422 4689999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++++||||++|.+|++..++++|+|+||||+|||+||++|++||||||||||||+++++||||||||||||+|
T Consensus 162 EV~TP~L~~s~~ega~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af 241 (588)
T PRK00476 162 EIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSF 241 (588)
T ss_pred EEECCeeecCCCCCCccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecC
Confidence 99999999999999999999988778999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++++++|+++|+||+++++.+.+.++..||+||||.|||++||+||||+||++++.|+++++.+++|.+|...++.++.|
T Consensus 242 ~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~V 321 (588)
T PRK00476 242 VTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGRV 321 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCCchhhhhhhccCCeE
Confidence 99999999999999999999999888899999999999999999999999999999999999999999998888888999
Q ss_pred EEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcC
Q 043787 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVG 320 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~ 320 (452)
+++++|+.....++++++. +.++|+.+|++|++|+++.+++ + .+++++++++++.++|.+.+++++||+|+++|+
T Consensus 322 kaI~vp~~~~~~~rk~id~--L~e~AK~~gakGL~~i~~~~~~-l--~~~~akflsee~~~~L~e~l~~k~GDll~~~A~ 396 (588)
T PRK00476 322 KAIRVPGGAAQLSRKQIDE--LTEFAKIYGAKGLAYIKVNEDG-L--KGPIAKFLSEEELAALLERTGAKDGDLIFFGAD 396 (588)
T ss_pred EEEEecCCCCccchhHHHH--HHHHHHHcCCCceEEEEEcCCC-C--cCchhhcCCHHHHHHHHHHhCCCCCCEEEEECC
Confidence 9999997654233777753 5567888999999999986543 3 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc-----Chhhhhhceee
Q 043787 321 HPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD-----DLSSARALAYD 395 (452)
Q Consensus 321 ~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~-----~~~~v~a~~YD 395 (452)
+...++++||+||+++++.++|++++.|+|+||||||||||++++|||+|+|||||||+++|++ +|.+|+|+|||
T Consensus 397 ~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~d 476 (588)
T PRK00476 397 KAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYD 476 (588)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheee
Confidence 9899999999999999999999998899999999999999999999999999999999999865 56789999999
Q ss_pred eeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 396 MVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 396 LVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
|||||+|||||||||||+++|+++|+++|+++++++.+|+|||+||+|| ||||-
T Consensus 477 lv~ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~pph~ 530 (588)
T PRK00476 477 LVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYG---APPHG 530 (588)
T ss_pred eEEeeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCCc
Confidence 9999999999999999999999999999999999999999999999999 99993
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-118 Score=952.11 Aligned_cols=436 Identities=51% Similarity=0.857 Sum_probs=411.7
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++||++||.+++++|||+|. ++|+++.+. ..++++|++|||||||++.++++|++||++++++|+||.+ +||+
T Consensus 86 ~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~-----~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff~~-~gFi 158 (583)
T TIGR00459 86 LDTGEIEILAESITLLNKSK-TPPLIIEKT-----DAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQ-QGFL 158 (583)
T ss_pred CCCCcEEEEEeEEEEeecCC-CCCCccccc-----ccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 36899999999999999984 789887522 4678999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++++||||++|.+|++..++.+|+|+||||+|||+||++|++||||||||||||+++++||||||||||||+|
T Consensus 159 EVeTP~L~~s~~eGar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af 238 (583)
T TIGR00459 159 EIETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSF 238 (583)
T ss_pred EEECCeeccCCCCCCcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecC
Confidence 99999999999999999999998778899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++++|+|+++|+||+++++++.+++++.||+||||.|||++||+||||+||++++.|+++++.+++|.+|...+.+++.|
T Consensus 239 ~d~~dvm~~~E~li~~v~~~v~~~~~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v 318 (583)
T TIGR00459 239 MTQEDVMELIEKLVSHVFLEVKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRV 318 (583)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhccCCcchhhhhhccCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred EEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcC
Q 043787 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVG 320 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~ 320 (452)
.++++|++...+++++++. +.+.++..|++|++|+++.+++ . .+++.|+++++..++|.+.+++++||+|+++|+
T Consensus 319 ~~i~~~~~~~~~~~~~~~~--l~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~ 393 (583)
T TIGR00459 319 KAIRVPGGWAELSRKSIKE--LRKFAKEYGAKGLAYLKVNEDG-I--NSPIKKFLDEKKGKILLERTDAQNGDILLFGAG 393 (583)
T ss_pred EEEEecCCcCccCHhHHHH--HHHHHHHcCCCcceEEEEcCCc-C--CCchhhhcCHHHHHHHHHHhCCCCCCEEEEecC
Confidence 9999998755688887753 5567888999999999997664 2 478999999988999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----Chhhhhhceeee
Q 043787 321 HPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSARALAYDM 396 (452)
Q Consensus 321 ~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~a~~YDL 396 (452)
+...++++||+||+++|+.+++++++.++|+||||||||||+ ++|||+|+|||||||+++|++ +|.+|++++|||
T Consensus 394 ~~~~~~~~lG~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~-~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDL 472 (583)
T TIGR00459 394 SKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKD-KEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDL 472 (583)
T ss_pred cchhHHHHHHHHHHHHHHHcCCcCCCCceEEEEEeCCCcccc-CCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeE
Confidence 999999999999999999999999999999999999999999 689999999999999999987 678899999999
Q ss_pred eecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 397 VYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 397 VlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
||||+||||||+||||+++|+++|+.||+++++++.+|+|||+||+|| ||||-
T Consensus 473 vlnG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG---~PPhg 525 (583)
T TIGR00459 473 VLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYG---TPPHA 525 (583)
T ss_pred EEeceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CCCcC
Confidence 999999999999999999999999999999999999999999999999 99993
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-116 Score=888.83 Aligned_cols=443 Identities=52% Similarity=0.822 Sum_probs=381.9
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
|+||.+|+.+++++++|++...+|+...+........++.+|+++||||||++.||.+||+||.+...||+||.+..||+
T Consensus 120 m~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl~n~~GFv 199 (628)
T KOG2411|consen 120 MKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYLNNRHGFV 199 (628)
T ss_pred ccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhhcCee
Confidence 78999999999999999998899999876432233578999999999999999999999999999999999999877899
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|.+.||+||+||.||+|...|+||+|+||||+|||+||++|++||||||||||||++|+||||||||+|+||||
T Consensus 200 evETPtLFkrTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF 279 (628)
T KOG2411|consen 200 EVETPTLFKRTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSF 279 (628)
T ss_pred eccCcchhccCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEec
Confidence 99999999999999999999999877999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeE
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGII 240 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v 240 (452)
++.+++|+++|++++++|.+.+++.++.||+||||+|||++||+||||+||++++.|+++....+ |......++-+
T Consensus 280 ~~~~dim~liEdll~~~ws~~k~~~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~----~~~~~~~d~l~ 355 (628)
T KOG2411|consen 280 TDQEDIMKLIEDLLRYVWSEDKGIQLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKS----FEEALLSDGLI 355 (628)
T ss_pred cCHHHHHHHHHHHHHHhchhhcCCCCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhh----hhhhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999998877443 22222233333
Q ss_pred EEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcC
Q 043787 241 KVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVG 320 (452)
Q Consensus 241 ~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~ 320 (452)
....++.+++.++.+..++.+.++.+-+.|.+|+.+++..+.. -.|..++.+.+.+....+|++.+++++||+||+++|
T Consensus 356 ~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~-~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g 434 (628)
T KOG2411|consen 356 SVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDAN-KNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVG 434 (628)
T ss_pred ceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccch-hhhhhhchhhccchHHHHHHHHhCCCCCCEEEEecc
Confidence 3333444444455554444445566666789999988865432 124555555544556678999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHc--CCCCCCCccEEEEeccCCCccCcccc-cccccccCcCCCCCCCccC----hhhhhhce
Q 043787 321 HPASVNKTLDRLRTFVAHEL--GLIDNSKHSILWITDFPMFEWNDSEQ-RLEALHHPFTAPNPEDMDD----LSSARALA 393 (452)
Q Consensus 321 ~~~~~~~~LG~lR~~l~~~l--~l~~~~~~~flWV~dFPlfe~~e~~~-r~~a~HHPFT~P~~ed~~~----~~~v~a~~ 393 (452)
....+++.||+||+.+...+ ++++++.+.|+||||||||++.+|.+ ++.|+|||||||+++|+++ ++++|++|
T Consensus 435 ~~~~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqh 514 (628)
T KOG2411|consen 435 PKVSVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQH 514 (628)
T ss_pred CCccCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcce
Confidence 99899999999998777655 69999999999999999999777665 9999999999999999984 57899999
Q ss_pred eeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 394 YDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 394 YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
||||+||+|||||||||||+++|++|++.++..+++.+.+ ||||+||.+| ||||-
T Consensus 515 YDlV~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~-gHLL~ALd~G---aPPHG 569 (628)
T KOG2411|consen 515 YDLVVNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESK-GHLLNALDMG---APPHG 569 (628)
T ss_pred eeeEEccEeecCceeEecCHHHHHHHHHHHhcCchhhhhH-HHHHHHhhcC---CCCCC
Confidence 9999999999999999999999999998544444444433 8899999999 99993
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=512.09 Aligned_cols=298 Identities=27% Similarity=0.481 Sum_probs=249.6
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCC-CHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFV-KEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~-~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
..|.+||++++|+|+|.+..++|++++. + +.++|+++||||+|++..++++++||.+++++|+||.+ +||+
T Consensus 83 a~~g~El~v~~i~Vl~~a~~~~Pi~~~~-------~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~-~gF~ 154 (435)
T COG0017 83 APQGFELQVEKIEVLGEADPPYPIDKKE-------HSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYE-NGFT 154 (435)
T ss_pred CCCCEEEEEEEEEEeeccCCCCCcCccc-------ccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHh-CCcE
Confidence 4588999999999999995578888752 3 59999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeec
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~ 159 (452)
||+||+|+++++||+.+.|..+.+ ++.+||+||||||||+++++ ++|||+|||+||+|+++|+|| .||||+|.||+
T Consensus 155 eV~tP~i~~~~~EGg~elF~v~yf--~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Ema 231 (435)
T COG0017 155 EVHTPIITASATEGGGELFKVDYF--DKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMA 231 (435)
T ss_pred EecCceEeccCCCCCceeEEEeec--CcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecceec
Confidence 999999999999999887754442 55688999999999997666 999999999999999999999 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC-------------CCCC----CCCceeeHHHHHHHhCCCCCCCccccccccccccc
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD-------------VQLP----NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIF 222 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~-------------~~l~----~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~ 222 (452)
|++++|+|+++|+||+++++.++. ..++ .||+||||+||+++++...-+. +.|
T Consensus 232 f~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~~~~e~-----~~~----- 301 (435)
T COG0017 232 FADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEAIEILEEKGFEK-----VEW----- 301 (435)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhcccccCCccEEEHHHHHHHHHhcCCcc-----cCC-----
Confidence 999999999999999999998742 2222 5799999999999986321000 111
Q ss_pred ccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHH
Q 043787 223 LESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQ 302 (452)
Q Consensus 223 ~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~ 302 (452)
..+|+.+..
T Consensus 302 ---------------------------------------------------------------------GdDl~~e~E-- 310 (435)
T COG0017 302 ---------------------------------------------------------------------GDDLGTEHE-- 310 (435)
T ss_pred ---------------------------------------------------------------------CCccCCHHH--
Confidence 112222221
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCC-CC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPN-PE 381 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~-~e 381 (452)
..|++.++ -.|+||||||.- ..||+|.. ++
T Consensus 311 -------------------------------r~l~e~~~------~~~vfv~~yP~~------------~kpFYm~~~~d 341 (435)
T COG0017 311 -------------------------------RYLGEEYF------KPPVFVTNYPKE------------IKPFYMRPDPD 341 (435)
T ss_pred -------------------------------HHHHHHhC------CCcEEEEeCccc------------ccccccccCCC
Confidence 13445443 237999999974 78997654 44
Q ss_pred CccChhhhhhceeeeeecC-eEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 382 DMDDLSSARALAYDMVYNG-VEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 382 d~~~~~~v~a~~YDLVlNG-~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+.. .+.||||+++| -||.|||+|||++|+..+-++..|+++++++| |||++||| ||||-
T Consensus 342 ~p~-----~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~w----Yld~~kyG---~~PHa 401 (435)
T COG0017 342 NPG-----TVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEW----YLDLRKYG---MPPHA 401 (435)
T ss_pred CCC-----eEEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHH----HHHHHHcC---CCCCc
Confidence 323 68899999999 69999999999999999999999999999999 99999999 99993
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-62 Score=521.33 Aligned_cols=304 Identities=18% Similarity=0.314 Sum_probs=246.5
Q ss_pred CCCCceEEEEeEEEEEecCC-CCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 043787 1 MKTGFIEVAVEHVQVLNAVR-SKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGF 79 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~-~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF 79 (452)
+++|.+||.|++|+|||++. .++|++.+ ..+.|++++|||||+|++.++++||+||++++++|+||.+ +||
T Consensus 183 ~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k-------~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~-~GF 254 (633)
T PLN02532 183 QGKHVIELEVEKILHIGTVDPEKYPLSKK-------RLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQD-HGF 254 (633)
T ss_pred CCCCcEEEEeeEEEEEecCCCCCCccccc-------cCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 35899999999999999874 36776543 3567788899999999999999999999999999999998 999
Q ss_pred EEEcCceEeecCCCCCccce-eecc-------------------------------------------------------
Q 043787 80 VEIETPVLSRSTPEGARDYL-VPSR------------------------------------------------------- 103 (452)
Q Consensus 80 ~EV~TPiL~~~~~eGa~~~~-v~~~------------------------------------------------------- 103 (452)
+||+||+|++++||||+++| |.+.
T Consensus 255 iEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (633)
T PLN02532 255 LYVQVPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDL 334 (633)
T ss_pred EEeeCCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccc
Confidence 99999999999999999875 3210
Q ss_pred ----------------------------c---CCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cce
Q 043787 104 ----------------------------V---QPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEF 151 (452)
Q Consensus 104 ----------------------------~---~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EF 151 (452)
+ ..|+.+||+||||||+|++ ++|++|||+||||||||.++|.|| +||
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~-~~gl~rVYeIgP~FRAE~s~T~RHL~EF 413 (633)
T PLN02532 335 RKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY-ACALGNVYTFGPRFRADRIDSARHLAEM 413 (633)
T ss_pred cccccccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHH-HHhcCceEEEccceecCCCCCCcccccc
Confidence 0 1145568999999999995 569999999999999999999898 999
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC----------------------CCCCCCceeeHHHHHHHhCCCCCCC
Q 043787 152 TQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV----------------------QLPNPFPRLTYAEAMSRYGSDRPDT 209 (452)
Q Consensus 152 tqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~----------------------~l~~pf~rity~eA~~~~g~dkpd~ 209 (452)
||||+||+|++++|+|+++|+||+++++.+++. .+..||+||||.||++.+.... ..
T Consensus 414 tmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~-~~ 492 (633)
T PLN02532 414 WMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQAT-DK 492 (633)
T ss_pred cceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhc-CC
Confidence 999999999999999999999999999877531 1336999999999999874321 00
Q ss_pred cccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccc
Q 043787 210 RFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIP 289 (452)
Q Consensus 210 r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~ 289 (452)
.++..+
T Consensus 493 ~~e~~~-------------------------------------------------------------------------- 498 (633)
T PLN02532 493 KFETKP-------------------------------------------------------------------------- 498 (633)
T ss_pred Cccccc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred cccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHH-cCCCCCCCccEEEEeccCCCccCcccccc
Q 043787 290 ALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHE-LGLIDNSKHSILWITDFPMFEWNDSEQRL 368 (452)
Q Consensus 290 ~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~-l~l~~~~~~~flWV~dFPlfe~~e~~~r~ 368 (452)
.+...|+.+... +|++. ++ .++||+|||.-
T Consensus 499 ~~g~dL~~e~Er---------------------------------~L~~~~~~-------~PvFVtdyP~~--------- 529 (633)
T PLN02532 499 EWGIALTTEHLS---------------------------------YLADEIYK-------KPVIIYNYPKE--------- 529 (633)
T ss_pred ccCCccChHHHH---------------------------------HHHHHHcC-------CCEEEECCChh---------
Confidence 001123322221 33443 23 57999999984
Q ss_pred cccccCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCC
Q 043787 369 EALHHPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFN 447 (452)
Q Consensus 369 ~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~ 447 (452)
..||+|...+|.. .+.+|||+++|+ ||.|||+|+|+++.....++..|++++.++| ||++|+||
T Consensus 530 ---ikPFY~~~~~d~~-----~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~Gld~e~~ew----YLdlrryG--- 594 (633)
T PLN02532 530 ---LKPFYVRLNDDGK-----TVAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEW----YLDLRRHG--- 594 (633)
T ss_pred ---hchhhCCcCCCCC-----ceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcCCChhhHHH----HHHHHHcC---
Confidence 7899997665533 579999999987 9999999999999999999999999999999 99999999
Q ss_pred CCCCC
Q 043787 448 CQPQT 452 (452)
Q Consensus 448 ~~p~~ 452 (452)
+|||.
T Consensus 595 ~pPHg 599 (633)
T PLN02532 595 TVKHS 599 (633)
T ss_pred CCCCe
Confidence 99993
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=498.67 Aligned_cols=299 Identities=30% Similarity=0.541 Sum_probs=248.5
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||.+++++|||+|..++|+++++. ...+.++|+++||||+|++.+++++++||++++++|+||.+ +||+||
T Consensus 81 ~~~~el~~~~i~vl~~~~~~lP~~~~~~----~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~-~gf~EV 155 (428)
T TIGR00458 81 PGGFEIIPTKIEVINEAKEPLPLDPTEK----VPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAE-EGFIEV 155 (428)
T ss_pred CCcEEEEEeEEEEEecCCCCCCCCcccc----CCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
Confidence 5899999999999999977899987643 24678999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC
Q 043787 83 ETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT 161 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~ 161 (452)
+||+|++++|||+.+.+..+.. ++.+||+||||+|||+|+++|++||||||||||||+++++|| ||||||||||+|.
T Consensus 156 ~TP~L~~~~~eg~~~~f~v~~~--~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~ 233 (428)
T TIGR00458 156 HTPKLVASATEGGTELFPITYF--EREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFE 233 (428)
T ss_pred eCCceecCCCCCCcceeeeEec--CCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccC
Confidence 9999999999998876643332 455679999999999999999999999999999999999888 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcC----------CCC---CCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 162 PLDDMLRLNEDLIRKIFLEIKD----------VQL---PNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 162 ~~~dlm~~~E~li~~i~~~~~~----------~~l---~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+++++|+++|+||++++..+.+ ..+ ..||+||||.||++.+.... .++.+
T Consensus 234 ~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~l~~~g------~~~~~----------- 296 (428)
T TIGR00458 234 DHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEKPEGKFVRLTYDEAIEMANAKG------VEIGW----------- 296 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccccccCCCCceEEEHHHHHHHHHHcC------CCCCC-----------
Confidence 9999999999999999986643 222 35899999999998653210 00000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
| ..++.+.
T Consensus 297 ------------------------------------------------------~---------~~l~~~~--------- 304 (428)
T TIGR00458 297 ------------------------------------------------------G---------EDLSTEA--------- 304 (428)
T ss_pred ------------------------------------------------------c---------cccchHH---------
Confidence 0 0011111
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcC-CCCCCCccChh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFT-APNPEDMDDLS 387 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT-~P~~ed~~~~~ 387 (452)
-..+++.++ .++||+|||.- ..||+ +|++++..
T Consensus 305 ------------------------E~~l~~~~~-------~p~fi~d~P~~------------~~pfy~~~~~~~p~--- 338 (428)
T TIGR00458 305 ------------------------EKALGEEMD-------GLYFITDWPTE------------IRPFYTMPDEDNPE--- 338 (428)
T ss_pred ------------------------HHHHHHHhC-------CCEEEEeCchh------------cCcccccccCCCCC---
Confidence 112333332 57999999974 56895 67776654
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.++|.||+|||.|+||++.|++.++..|++++..+| ||+|++|| +|||.
T Consensus 339 --~~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~----yl~a~~~G---~pP~~ 394 (428)
T TIGR00458 339 --ISKSFDLMYRDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKD----YLEAFSYG---MPPHA 394 (428)
T ss_pred --EEEEEEEEeCCeEEeeCchhcCCHHHHHHHHHHcCCChHHHHH----HHHHHHCC---CCCcC
Confidence 6899999999999999999999999999999999999998888 99999999 99994
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-61 Score=509.98 Aligned_cols=303 Identities=21% Similarity=0.294 Sum_probs=245.4
Q ss_pred CCCceEEEE-----eEEEEEecCC--CCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHh
Q 043787 2 KTGFIEVAV-----EHVQVLNAVR--SKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLE 74 (452)
Q Consensus 2 ~tg~iEl~~-----~~i~vl~~~~--~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~ 74 (452)
++|.+||.+ .+++|||.+. .+||++.+ .++.++++++||||+|++.++++||+||++..++|+||.
T Consensus 158 ~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k-------~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~ 230 (586)
T PTZ00425 158 LKENVELALKDNSIHNFEIYGENLDPQKYPLSKK-------NHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQ 230 (586)
T ss_pred CCccEEEEEecCCCceEEEEeccCCCCCCCCCCc-------cCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899998 7999999873 25676543 467899999999999999999999999999999999999
Q ss_pred hcCCeEEEcCceEeecCCCCCcc-ceeecccC------------------------------------------------
Q 043787 75 DVHGFVEIETPVLSRSTPEGARD-YLVPSRVQ------------------------------------------------ 105 (452)
Q Consensus 75 ~~~gF~EV~TPiL~~~~~eGa~~-~~v~~~~~------------------------------------------------ 105 (452)
+ +||+||+||+|++++||||++ |.||++..
T Consensus 231 ~-~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 309 (586)
T PTZ00425 231 S-RGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAY 309 (586)
T ss_pred H-CCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8 999999999999999999999 66776421
Q ss_pred ------------CCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCCCHHHHHHHHHH
Q 043787 106 ------------PGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNED 172 (452)
Q Consensus 106 ------------~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~ 172 (452)
-|+..||+||||||+|++ ++|++||||||||||||+++++|| +||||||+||+|++++++|+++|+
T Consensus 310 ~~~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~ 388 (586)
T PTZ00425 310 PDQYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAES 388 (586)
T ss_pred cccccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHH
Confidence 124557999999999985 688999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHhcCC--------------C--------CCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccc
Q 043787 173 LIRKIFLEIKDV--------------Q--------LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVF 230 (452)
Q Consensus 173 li~~i~~~~~~~--------------~--------l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~ 230 (452)
||++++..+++. + +..||+||||+||++.+.... + .++..+
T Consensus 389 li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~-~-~~~~~~--------------- 451 (586)
T PTZ00425 389 YIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYS-D-SFEVPV--------------- 451 (586)
T ss_pred HHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhH-H-hcCCCC---------------
Confidence 999999987541 0 235899999999998864310 0 000000
Q ss_pred cccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCC
Q 043787 231 SDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAG 310 (452)
Q Consensus 231 ~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~ 310 (452)
++...|+.+..
T Consensus 452 -----------------------------------------------------------~~G~dL~~e~E---------- 462 (586)
T PTZ00425 452 -----------------------------------------------------------KWGMDLQSEHE---------- 462 (586)
T ss_pred -----------------------------------------------------------CcccccchHHH----------
Confidence 00011222211
Q ss_pred CCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhh
Q 043787 311 PSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSAR 390 (452)
Q Consensus 311 ~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~ 390 (452)
.++++.+. -.|+||+|||.- ..||+|...+|-. .
T Consensus 463 -----------------------r~L~~~~~------~~PvFItdyP~~------------~kPFY~~~~~d~~-----~ 496 (586)
T PTZ00425 463 -----------------------RFVAEQIF------KKPVIVYNYPKD------------LKAFYMKLNEDQK-----T 496 (586)
T ss_pred -----------------------HHHHHHhc------CCcEEEECCccc------------cCccccCcCCCCC-----e
Confidence 13444431 158999999973 7899886544422 4
Q ss_pred hceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 391 ALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 391 a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+.+|||+++|+ ||.|||+|+|+++.....++..|++++.++| ||++++|| ||||-
T Consensus 497 v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~w----YLd~rryG---~pPhg 552 (586)
T PTZ00425 497 VAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWW----YRQLRKFG---SHPHA 552 (586)
T ss_pred EEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHH----HHHHhhCC---CCCCc
Confidence 68999999996 9999999999999999999999999999999 99999999 99993
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-61 Score=510.82 Aligned_cols=346 Identities=23% Similarity=0.355 Sum_probs=250.8
Q ss_pred CCCceEEEEeEEEEEecCCCCCCccccccccc----CCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcC
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDA----KDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVH 77 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~----~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~ 77 (452)
.+|++||++++|+|||+|..++|+++++..+. ...++.++|+++||||||++.+++++++||++++++|+||.+ +
T Consensus 152 ~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i~~~~R~fl~~-~ 230 (550)
T PTZ00401 152 SHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLID-S 230 (550)
T ss_pred CCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-C
Confidence 47889999999999999977899988653211 113578999999999999999999999999999999999998 9
Q ss_pred CeEEEcCceEeecCCCCC-ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeee
Q 043787 78 GFVEIETPVLSRSTPEGA-RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLD 155 (452)
Q Consensus 78 gF~EV~TPiL~~~~~eGa-~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe 155 (452)
||+||+||+|+++++||+ ..|.+++. +..+||+||||+|||+|+++|++||||||||||+|+++|+|| |||||||
T Consensus 231 gFiEV~TP~L~~~~~egga~~F~v~yf---~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le 307 (550)
T PTZ00401 231 DFCEIHSPKIINAPSEGGANVFKLEYF---NRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLD 307 (550)
T ss_pred CCEEEeCCccccCCCCccccccccccC---CCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhh
Confidence 999999999999988854 55556643 678899999999999999999999999999999999999888 8999999
Q ss_pred eeecCC-CHHHHHHHHHHHHHHHHHHhcCC--CC-----CCCCcee--eHHHHHHHh-CCCCCCCccccccccccccccc
Q 043787 156 MELAFT-PLDDMLRLNEDLIRKIFLEIKDV--QL-----PNPFPRL--TYAEAMSRY-GSDRPDTRFSLQLNDVSDIFLE 224 (452)
Q Consensus 156 ~e~~f~-~~~dlm~~~E~li~~i~~~~~~~--~l-----~~pf~ri--ty~eA~~~~-g~dkpd~r~~~~~~~~~~~~~~ 224 (452)
|||+|. +++++|+++|+|+++++..+.+. ++ ..||..+ +|.+++..+ |.+......... ..+.+...+
T Consensus 308 ~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~l~~~~~~ 386 (550)
T PTZ00401 308 VEMRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPT-DKYQARVHN 386 (550)
T ss_pred hhhHhcCCHHHHHHHHHHHHHHHHHHHHccchhhhhhccccccccccccccHHHHHhcCCCcccccccch-HHHHHHHHh
Confidence 999996 89999999999999999877542 11 1345443 444444443 433211000000 000111100
Q ss_pred CccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHH
Q 043787 225 SPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLL 304 (452)
Q Consensus 225 ~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~ 304 (452)
+ +.+...+.|..+ .+..++.|..-+ ++ ..+++.+
T Consensus 387 ---------~--~~~~~rl~y~ea--------------i~lL~~~~~~~~------~~---------~~dl~~~------ 420 (550)
T PTZ00401 387 ---------M--DSRMLRINYMHC--------------IELLNTVLEEKM------AP---------TDDINTT------ 420 (550)
T ss_pred ---------c--CCCcccccHHHH--------------HHHHHHhcccCC------Cc---------ccccCch------
Confidence 0 000001111100 011111110000 00 0122211
Q ss_pred HHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEec-cCCCccCcccccccccccCc-CCCCCCC
Q 043787 305 IRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITD-FPMFEWNDSEQRLEALHHPF-TAPNPED 382 (452)
Q Consensus 305 ~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~d-FPlfe~~e~~~r~~a~HHPF-T~P~~ed 382 (452)
....||++ +...++ .++||+| ||.- ..|| |||.++|
T Consensus 421 --------------------~E~~L~~~---v~~~~~-------~~~fI~d~yP~~------------~rpFY~~~~~~d 458 (550)
T PTZ00401 421 --------------------NEKLLGKL---VKERYG-------TDFFISDRFPSS------------ARPFYTMECKDD 458 (550)
T ss_pred --------------------HHHHHHHH---HHHhcC-------CCEEEECCCChh------------hCchhcCcCCCC
Confidence 22334443 223344 4599998 9974 6898 6898877
Q ss_pred ccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 383 MDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 383 ~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.. .+.+|||.++|.||+|||+|+||++.|.+.++..|++++.++| ||+|++|| ||||.
T Consensus 459 p~-----~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~----Yl~a~~~G---~PPhg 516 (550)
T PTZ00401 459 ER-----FTNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKE----YVDSFRLG---AWPHG 516 (550)
T ss_pred CC-----EEEEEEEEeCCEEEccchhhcCCHHHHHHHHHHcCCCchhhHH----HHHHHHcC---CCCCc
Confidence 65 7899999999999999999999999999999999999999999 99999999 99993
|
|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-60 Score=494.16 Aligned_cols=303 Identities=31% Similarity=0.562 Sum_probs=246.6
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
.|++||.+++++|||+|..++|+.+.+.. ..+.++|+++||||+|++.++++|++||++++++|+||.+ +||+||
T Consensus 84 ~~~~el~~~~i~vls~a~~~~P~~~~~~~----~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~-~gf~EV 158 (437)
T PRK05159 84 PGGVEVIPEEIEVLNKAEEPLPLDISGKV----LAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE-NGFTEI 158 (437)
T ss_pred CCCEEEEEeEEEEEeCCCCCCCCCccccc----cCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
Confidence 47899999999999999768998765321 3568999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccce-eecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecC
Q 043787 83 ETPVLSRSTPEGARDYL-VPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~-v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f 160 (452)
+||+|+++++||+.+.+ +.+ .|+.+||+||||+|||+|+++|++||||||||||||+++++|| ||||||||||+|
T Consensus 159 ~TP~L~~~~~eg~~~~f~~~~---~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~ 235 (437)
T PRK05159 159 FTPKIVASGTEGGAELFPIDY---FEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGF 235 (437)
T ss_pred eCCcccccCCCCCcceEeEEe---cCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeee
Confidence 99999999999887644 322 3677899999999999999999999999999999999999888 999999999999
Q ss_pred CC-HHHHHHHHHHHHHHHHHHhc----------CCC---CCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCc
Q 043787 161 TP-LDDMLRLNEDLIRKIFLEIK----------DVQ---LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESP 226 (452)
Q Consensus 161 ~~-~~dlm~~~E~li~~i~~~~~----------~~~---l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~ 226 (452)
++ ++++|+++|+||+++++.+. +.. ++.||+||||.||++.+.... .++.+.
T Consensus 236 ~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~~~~~~f~rit~~eA~~~l~~~~------~~~~~~-------- 301 (437)
T PRK05159 236 IDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIPRITYDEAIEILKSKG------NEISWG-------- 301 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCCcCCCCceEeEHHHHHHHHHHcC------CCCCCC--------
Confidence 98 99999999999999998663 322 337999999999999873211 000000
Q ss_pred cccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHH
Q 043787 227 FRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIR 306 (452)
Q Consensus 227 f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~ 306 (452)
..++.+....|.
T Consensus 302 ------------------------------------------------------------------~~~~~~~e~~l~-- 313 (437)
T PRK05159 302 ------------------------------------------------------------------DDLDTEGERLLG-- 313 (437)
T ss_pred ------------------------------------------------------------------CCCCcHHHHHHH--
Confidence 001110100010
Q ss_pred hCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccC
Q 043787 307 CSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDD 385 (452)
Q Consensus 307 ~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~ 385 (452)
. .+.+.++ -.|+||+|||.- ..|| ++|++++..
T Consensus 314 ------------------------~---~~~~~~~------~~p~fi~~~P~~------------~~pfy~~~~~~~~~- 347 (437)
T PRK05159 314 ------------------------E---YVKEEYG------SDFYFITDYPSE------------KRPFYTMPDEDDPE- 347 (437)
T ss_pred ------------------------H---HHhhhcC------CceEEEecCchh------------cCcceeeecCCCCC-
Confidence 0 1112222 128999999974 5689 556666543
Q ss_pred hhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 386 LSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 386 ~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.++|+||+|||.|+||++.|++.|+..|++++..+| ||+|++|| +|||.
T Consensus 348 ----~~~~fdl~~~g~Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~----yl~a~~~G---~pp~~ 403 (437)
T PRK05159 348 ----ISKSFDLLFRGLEITSGGQRIHRYDMLVESIKEKGLNPESFEF----YLEAFKYG---MPPHG 403 (437)
T ss_pred ----EEEEEEEEECCEEEeeCeEEcCCHHHHHHHHHHcCCCHHHHHH----HHHHHHCC---CCCCC
Confidence 6899999999999999999999999999999999999999988 99999999 99993
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=492.63 Aligned_cols=288 Identities=38% Similarity=0.649 Sum_probs=226.6
Q ss_pred CHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCC-Cccceeec--ccCCCceeeecC
Q 043787 38 KEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEG-ARDYLVPS--RVQPGTFYALPQ 114 (452)
Q Consensus 38 ~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eG-a~~~~v~~--~~~~g~~~~L~q 114 (452)
++++|+++||||+|++.+++++++||++++++|+||.+ +||+||+||+|++++++| +..|.+++ ....|+.+||+|
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~-~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDK-RGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHh-CCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 47899999999999999999999999999999999998 999999999999999998 56676762 111356778999
Q ss_pred CHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhc--------CCC
Q 043787 115 SPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK--------DVQ 185 (452)
Q Consensus 115 SpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~--------~~~ 185 (452)
|||+|||+++++|++||||||||||+|++++.|| ||||||||||+|+|++++|+++|+||+++++++. +.+
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~~~~~~ 159 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKELSLNID 159 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcccccccc
Confidence 9999999999999999999999999999988888 8999999999999999999999999999999886 667
Q ss_pred CCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHH
Q 043787 186 LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNE 265 (452)
Q Consensus 186 l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~ 265 (452)
++.||+|+||.||+++|++++||++++.++.++.+. .+.++
T Consensus 160 ~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-------------------------------------- 200 (335)
T PF00152_consen 160 LPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEI-EELEF-------------------------------------- 200 (335)
T ss_dssp SSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHH-HHTTH--------------------------------------
T ss_pred ccCCceEeeehHHHHHhhcccccchhHHHHHHHHHH-hcccc--------------------------------------
Confidence 778899999999999999998888765433322211 00000
Q ss_pred HHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCC
Q 043787 266 AIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDN 345 (452)
Q Consensus 266 ~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~ 345 (452)
...+.++... -.+|.+..
T Consensus 201 ------------------------~~~~~l~~~~---------------------------------e~~L~~~~----- 218 (335)
T PF00152_consen 201 ------------------------EVGRLLSEEV---------------------------------EPYLVEKY----- 218 (335)
T ss_dssp ------------------------HCHHHHHHHH---------------------------------HHHHHHHH-----
T ss_pred ------------------------hHHHHHHHHH---------------------------------HHHhhhcc-----
Confidence 0000000000 01222212
Q ss_pred CCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCC
Q 043787 346 SKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGI 425 (452)
Q Consensus 346 ~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~ 425 (452)
...|+||+|||.. .+||+++..++. ...+.+|||++||.||+|||+|+||++.|++.|+..|+
T Consensus 219 -~~~p~fI~~~P~~------------~~pf~~~~~~~~----~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~r~~~~~~ 281 (335)
T PF00152_consen 219 -FTDPVFITDYPAE------------QSPFYKPPNDDD----PGVAERFDLYIPGGEIANGSQREHDPEELRERFEEQGI 281 (335)
T ss_dssp -SSSEEEEEEEBGG------------GSTTTBBBSSST----TTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHTTH
T ss_pred -cCCcEEEEecccc------------cCcccccccccc----cccccceeEEEeCEEEehHHhhhhHHHHHHHHhhhccc
Confidence 2589999999986 699999987664 13799999999999999999999999999999999999
Q ss_pred CHHH----HhhhhhhhhhhhhcCCCCCCCC
Q 043787 426 SPEQ----FIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 426 ~~~~----~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
++++ .+| ||+|+++| ||||
T Consensus 282 ~~~~~~~~~~~----yl~~~~~G---~pp~ 304 (335)
T PF00152_consen 282 DPEEEMPIDEW----YLEALKYG---MPPH 304 (335)
T ss_dssp HGGGSHHHGHH----HHHHHHTT-----SE
T ss_pred ccccccchhHh----HHHhhhcc---Cccc
Confidence 8888 777 99999999 9998
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-59 Score=497.85 Aligned_cols=308 Identities=30% Similarity=0.472 Sum_probs=242.5
Q ss_pred CCCceEEEEeEEEEEecCCCCCCccccccccc-------------CCCCCHhhhhccceeeecchHHHHHHHHHHHHHHH
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDA-------------KDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKL 68 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~-------------~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~ 68 (452)
.||++||++++|+|||+|..++|+++++.... ...++.++|+++||||||++.+++++|+||.++++
T Consensus 155 ~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifrirs~i~~~ 234 (530)
T PLN02850 155 TTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNL 234 (530)
T ss_pred CCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHHHHHHHHHHH
Confidence 36789999999999999977899998753210 12356899999999999999999999999999999
Q ss_pred HHHHHhhcCCeEEEcCceEeecCCCCCcc-ceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCC
Q 043787 69 IRRYLEDVHGFVEIETPVLSRSTPEGARD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADR 147 (452)
Q Consensus 69 iR~ff~~~~gF~EV~TPiL~~~~~eGa~~-~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r 147 (452)
+|+||.+ +||+||+||+|+++++||+.+ |.+.+ .|+.+||+||||+|||+|+++|++||||||||||||+++++|
T Consensus 235 ~R~fl~~-~gF~EV~TP~L~~~~~egga~~F~v~y---f~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~R 310 (530)
T PLN02850 235 FREFLLS-KGFVEIHTPKLIAGASEGGSAVFRLDY---KGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHR 310 (530)
T ss_pred HHHHHHH-CCcEEEeCCccccCCCccccceeeecc---CCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCc
Confidence 9999998 999999999999999988654 54553 367889999999999999999999999999999999999999
Q ss_pred C-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcCC---CC--------------CCCCceeeHHHHHHHhCCCCCC
Q 043787 148 Q-PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKDV---QL--------------PNPFPRLTYAEAMSRYGSDRPD 208 (452)
Q Consensus 148 ~-~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~~---~l--------------~~pf~rity~eA~~~~g~dkpd 208 (452)
| +|||||||||+|. +++++|+++|+|+++++..+.+. ++ ..+++|+||+||++.+.
T Consensus 311 Hl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~----- 385 (530)
T PLN02850 311 HLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLK----- 385 (530)
T ss_pred cchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHH-----
Confidence 9 8999999999998 79999999999999999776421 00 01222333333333221
Q ss_pred CcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccc
Q 043787 209 TRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGI 288 (452)
Q Consensus 209 ~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~ 288 (452)
+.|.. + +.
T Consensus 386 -----------------------------------------------------------~~g~~------~-~~------ 393 (530)
T PLN02850 386 -----------------------------------------------------------EAGVE------V-DP------ 393 (530)
T ss_pred -----------------------------------------------------------HcCCC------C-CC------
Confidence 11100 0 00
Q ss_pred ccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccc
Q 043787 289 PALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRL 368 (452)
Q Consensus 289 ~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~ 368 (452)
...++. .....||++= .+.++ -.|+||+|||.-
T Consensus 394 ---~~dl~~--------------------------~~E~~Lg~~v---~~~~~------~~~~ii~~yP~~--------- 426 (530)
T PLN02850 394 ---LGDLNT--------------------------ESERKLGQLV---KEKYG------TDFYILHRYPLA--------- 426 (530)
T ss_pred ---CCCcch--------------------------HHHHHHHHHH---HHhcC------CCeEEEECCccc---------
Confidence 011111 1122333321 22333 247889999974
Q ss_pred cccccCc-CCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCC
Q 043787 369 EALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFN 447 (452)
Q Consensus 369 ~a~HHPF-T~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~ 447 (452)
..|| |||.++|.. .+.+|||.++|.||+||++|+||++.|++.++..|++++.++| ||+|++||
T Consensus 427 ---~~pfY~~~~~~d~~-----~~~~fDl~i~G~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~----Yl~a~~~G--- 491 (530)
T PLN02850 427 ---VRPFYTMPCPDDPK-----YSNSFDVFIRGEEIISGAQRVHDPELLEKRAEECGIDVKTIST----YIDSFRYG--- 491 (530)
T ss_pred ---cCchhccccCCCCC-----eEEEEEEEeCCEEEeccceecCCHHHHHHHHHHcCCChHHHHH----HHHHHHcC---
Confidence 7899 788877754 6899999999999999999999999999999999999999999 99999999
Q ss_pred CCCCC
Q 043787 448 CQPQT 452 (452)
Q Consensus 448 ~~p~~ 452 (452)
||||.
T Consensus 492 ~pPhg 496 (530)
T PLN02850 492 APPHG 496 (530)
T ss_pred CCCCc
Confidence 99993
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-59 Score=489.44 Aligned_cols=302 Identities=24% Similarity=0.371 Sum_probs=245.5
Q ss_pred CCCceEEEEeEEEEEecCC-CCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVR-SKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~-~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.+++++|||+|. .++|++.+ ..+.++++++||||+|++.+++++++||+|++++|+||.+ +||+
T Consensus 85 ~~~~~El~~~~i~vl~~~~~~~~P~~~~-------~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~-~gf~ 156 (453)
T TIGR00457 85 KGQPVELQVKKIEVVGEAEPDDYPLQKK-------EHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQE-NGFT 156 (453)
T ss_pred CCCCEEEEEeEEEEEecCCccCCCCCcc-------ccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 4789999999999999985 47888764 3567899999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccce-eeccc------CCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-ccee
Q 043787 81 EIETPVLSRSTPEGARDYL-VPSRV------QPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFT 152 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~-v~~~~------~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFt 152 (452)
||+||+|++++|||+.+.| +++.. ..|+.+||+||||+|||++ ++|++||||||||||||+++++|| ||||
T Consensus 157 eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt 235 (453)
T TIGR00457 157 WVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFW 235 (453)
T ss_pred EecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhc
Confidence 9999999999999988755 54211 1367778999999999985 689999999999999999999888 8999
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC----------CC------------CCCCceeeHHHHHHHhCCCCCCCc
Q 043787 153 QLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV----------QL------------PNPFPRLTYAEAMSRYGSDRPDTR 210 (452)
Q Consensus 153 qLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~----------~l------------~~pf~rity~eA~~~~g~dkpd~r 210 (452)
|||+||+|++++++|+++|+|++++++.+++. ++ ..||+||||+||++.+.....++.
T Consensus 236 ~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~ 315 (453)
T TIGR00457 236 MIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFE 315 (453)
T ss_pred cceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999876431 11 247999999999987643210000
Q ss_pred ccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccc
Q 043787 211 FSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPA 290 (452)
Q Consensus 211 ~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 290 (452)
. +. .
T Consensus 316 --~--------------------------------~~------------------------------------------~ 319 (453)
T TIGR00457 316 --Y--------------------------------ED------------------------------------------F 319 (453)
T ss_pred --C--------------------------------CC------------------------------------------C
Confidence 0 00 0
Q ss_pred ccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccc
Q 043787 291 LVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEA 370 (452)
Q Consensus 291 ~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a 370 (452)
+...|+.+.. .+|++.++ -.|+||||||.-
T Consensus 320 ~g~~l~~~~e---------------------------------~~L~~~~~------~~p~fIt~~P~~----------- 349 (453)
T TIGR00457 320 WGDDLQTEHE---------------------------------RFLAEEYF------KPPVFVTNYPKD----------- 349 (453)
T ss_pred CCCCCCcHHH---------------------------------HHHHHHhC------CCCEEEECCCcc-----------
Confidence 0011221111 13444433 247999999974
Q ss_pred cccCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCC
Q 043787 371 LHHPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQ 449 (452)
Q Consensus 371 ~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~ 449 (452)
..||+|...++.. .+.+|||+++|+ ||.|||.|+|+++.+.+.++..|++++.++| ||+|++|| +|
T Consensus 350 -~~pfy~~~~~~~~-----~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~----Yl~~~~~G---~p 416 (453)
T TIGR00457 350 -IKAFYMKLNDDGK-----TVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNW----YLDLRKYG---SV 416 (453)
T ss_pred -cChhhcccCCCcC-----ceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHH----HHHHHHcC---CC
Confidence 6899865434433 689999999997 9999999999999999999999999999999 99999999 99
Q ss_pred CC
Q 043787 450 PQ 451 (452)
Q Consensus 450 p~ 451 (452)
||
T Consensus 417 Ph 418 (453)
T TIGR00457 417 PH 418 (453)
T ss_pred CC
Confidence 99
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-59 Score=496.69 Aligned_cols=302 Identities=21% Similarity=0.314 Sum_probs=245.4
Q ss_pred CceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEc
Q 043787 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIE 83 (452)
Q Consensus 4 g~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~ 83 (452)
|.+||.|++|+|||+|..++|++.+ ..+.++++.++|||+|++.+++++|+||++++++|+||.+ +||+||+
T Consensus 178 ~~~EL~v~~i~vlg~a~~~~Pi~~~-------~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~-~gF~eV~ 249 (565)
T PLN02603 178 QKVELKVSKIVVVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFVWVS 249 (565)
T ss_pred ccEEEEEeEEEEEECCCCCCCCccc-------ccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 5699999999999999767888764 3567888899999999999999999999999999999998 9999999
Q ss_pred CceEeecCCCCCcc-ceeeccc---------------------------CCCceeeecCCHHHHHHHHhhcCCCceEEEe
Q 043787 84 TPVLSRSTPEGARD-YLVPSRV---------------------------QPGTFYALPQSPQLFKQMLMVSGFDKYYQIA 135 (452)
Q Consensus 84 TPiL~~~~~eGa~~-~~v~~~~---------------------------~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~ 135 (452)
||+|++++||||++ |.|++.. ..|+..||+||||||+|+ +++|++|||+||
T Consensus 250 TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~-~~~~l~rVy~ig 328 (565)
T PLN02603 250 SPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGET-YATALSDVYTFG 328 (565)
T ss_pred CCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHH-HHhcccceEEEe
Confidence 99999999999998 4464310 013445899999999999 578999999999
Q ss_pred eeeecCCCCCCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC------------C----------CCCCCce
Q 043787 136 RCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV------------Q----------LPNPFPR 192 (452)
Q Consensus 136 ~~FR~E~~~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~------------~----------l~~pf~r 192 (452)
||||||+++|+|| +||||||+||+|++++|+|+++|++|+++++.+++. + +..||+|
T Consensus 329 p~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~~~f~r 408 (565)
T PLN02603 329 PTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQ 408 (565)
T ss_pred cceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcCCCCCC
Confidence 9999999999999 899999999999999999999999999999987531 0 1358999
Q ss_pred eeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCC
Q 043787 193 LTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAK 272 (452)
Q Consensus 193 ity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~ 272 (452)
|||+||++.+.....+ ++...
T Consensus 409 ity~EAi~iL~~~~~~--~~~~~--------------------------------------------------------- 429 (565)
T PLN02603 409 LSYTDAIELLLKAKKK--FEFPV--------------------------------------------------------- 429 (565)
T ss_pred CCHHHHHHHHHHhccc--cCCCC---------------------------------------------------------
Confidence 9999999876432100 00000
Q ss_pred CccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEE
Q 043787 273 GLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILW 352 (452)
Q Consensus 273 gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flW 352 (452)
.+...|+.+.. .+|++.+. + -.|+|
T Consensus 430 -----------------~~g~dl~~e~E---------------------------------r~L~~~~~--~---~~Pvf 454 (565)
T PLN02603 430 -----------------KWGLDLQSEHE---------------------------------RYITEEAF--G---GRPVI 454 (565)
T ss_pred -----------------CccccccHHHH---------------------------------HHHHHHhc--c---CCCEE
Confidence 00112222221 13344331 0 15899
Q ss_pred EeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHh
Q 043787 353 ITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFI 431 (452)
Q Consensus 353 V~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~ 431 (452)
|+|||.- ..||+|+..+|.. .+.+|||+++|+ ||.|||+|+|+++...+.++..|+++++++
T Consensus 455 VtdyP~~------------ikpFYm~~~~d~~-----~v~~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~ 517 (565)
T PLN02603 455 IRDYPKE------------IKAFYMRENDDGK-----TVAAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYW 517 (565)
T ss_pred EECCccc------------cCccccccCCCCC-----eeEEEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHH
Confidence 9999984 7899998766533 457999999998 999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCCCCCCC
Q 043787 432 FAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 432 ~~f~~~l~a~~~G~~~~~p~~ 452 (452)
| ||++++|| +|||-
T Consensus 518 w----YLdl~r~G---~pPhg 531 (565)
T PLN02603 518 W----YLDLRRYG---SVPHA 531 (565)
T ss_pred H----HHHHHhcc---CCCCc
Confidence 9 99999999 99993
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=484.29 Aligned_cols=300 Identities=23% Similarity=0.392 Sum_probs=244.4
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||.|++++|||+|..++|++.+ .++.++|+++||||+|++.+++++++||.+++++|+||.+ +||+||
T Consensus 84 ~~~~el~~~~i~vl~~~~~~~p~~~~-------~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~-~gf~EV 155 (450)
T PRK03932 84 GQGYELQATKIEVIGEDPEDYPIQKK-------RHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNE-NGFVWV 155 (450)
T ss_pred CCCEEEEEEEEEEccCCCCCCCCCcc-------ccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEe
Confidence 57899999999999998667898764 3567899999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCcc-ceeecc------cCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeee
Q 043787 83 ETPVLSRSTPEGARD-YLVPSR------VQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQL 154 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~-~~v~~~------~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqL 154 (452)
+||+|++++|||+.+ |.++++ ...|..+||+||||+|||+| ++|++||||||||||||+++++|| ||||||
T Consensus 156 ~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 234 (450)
T PRK03932 156 DTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAEFWMI 234 (450)
T ss_pred cCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCcccccccccc
Confidence 999999999999877 556542 12467789999999999985 689999999999999999998888 899999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHhcC----------C-----------C-CCCCCceeeHHHHHHHhCCCCCCCccc
Q 043787 155 DMELAFTPLDDMLRLNEDLIRKIFLEIKD----------V-----------Q-LPNPFPRLTYAEAMSRYGSDRPDTRFS 212 (452)
Q Consensus 155 e~e~~f~~~~dlm~~~E~li~~i~~~~~~----------~-----------~-l~~pf~rity~eA~~~~g~dkpd~r~~ 212 (452)
||||+|++++++|+++|+||++++..+++ . + +..||+||||+||++.+.....++.
T Consensus 235 E~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~~~~-- 312 (450)
T PRK03932 235 EPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFE-- 312 (450)
T ss_pred ceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCCCcC--
Confidence 99999999999999999999999887653 1 1 3369999999999987532110000
Q ss_pred ccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccccc
Q 043787 213 LQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALV 292 (452)
Q Consensus 213 ~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 292 (452)
. +. .+.
T Consensus 313 ----------------------------------~---~~-------------------------------------~~g 318 (450)
T PRK03932 313 ----------------------------------F---PV-------------------------------------EWG 318 (450)
T ss_pred ----------------------------------C---CC-------------------------------------Ccc
Confidence 0 00 000
Q ss_pred ccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHH-HcCCCCCCCccEEEEeccCCCccCccccccccc
Q 043787 293 SSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAH-ELGLIDNSKHSILWITDFPMFEWNDSEQRLEAL 371 (452)
Q Consensus 293 k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~-~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~ 371 (452)
..++.+.. .++++ .++ .++||+|||.-
T Consensus 319 ~~l~~~~e---------------------------------~~l~~~~~~-------~pvfI~~yP~~------------ 346 (450)
T PRK03932 319 DDLGSEHE---------------------------------RYLAEEHFK-------KPVFVTNYPKD------------ 346 (450)
T ss_pred cccChHHH---------------------------------HHHHHHhcC-------CcEEEECCCcc------------
Confidence 11111111 02222 222 47999999974
Q ss_pred ccCcC-CCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCC
Q 043787 372 HHPFT-APNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQ 449 (452)
Q Consensus 372 HHPFT-~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~ 449 (452)
..||+ +|.+++ . .+.+|||++||+ ||.|||+|+|+++.+.+.++..|+++++++| ||+|++|| +|
T Consensus 347 ~~pfy~~~~~~~-~-----~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~----yl~~~~~G---~p 413 (450)
T PRK03932 347 IKAFYMRLNPDG-K-----TVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWW----YLDLRRYG---SV 413 (450)
T ss_pred cCcccCcCCCCC-C-----EEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHH----HHHHHHcC---CC
Confidence 67997 566655 4 689999999998 9999999999999999999999999998888 99999999 99
Q ss_pred CCC
Q 043787 450 PQT 452 (452)
Q Consensus 450 p~~ 452 (452)
||.
T Consensus 414 P~g 416 (450)
T PRK03932 414 PHS 416 (450)
T ss_pred CCC
Confidence 994
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-58 Score=491.73 Aligned_cols=306 Identities=23% Similarity=0.309 Sum_probs=245.3
Q ss_pred CCCceEEEEeEEEEEecCC-CCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVR-SKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~-~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||++++|+|||+|. .++|++.. ..+.++++++||||+|++.++++||+||.+++++|+||.+ +||+
T Consensus 120 ~~~~iEl~v~~i~vl~~a~~~~~Pi~~~-------~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~-~gFi 191 (572)
T PLN02221 120 TKQKIELSVEKVIDVGTVDPTKYPLPKT-------KLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQE-HSFL 191 (572)
T ss_pred CCccEEEEEeEEEEEecCCCCCCCCCCC-------cCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 4679999999999999985 36787653 4678888999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccce-eecc--------------------------------------------------------
Q 043787 81 EIETPVLSRSTPEGARDYL-VPSR-------------------------------------------------------- 103 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~-v~~~-------------------------------------------------------- 103 (452)
||+||+|++++||||++.| |.+.
T Consensus 192 EI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (572)
T PLN02221 192 YIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAEL 271 (572)
T ss_pred EEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhh
Confidence 9999999999999999865 4110
Q ss_pred -------------------------------cCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cce
Q 043787 104 -------------------------------VQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEF 151 (452)
Q Consensus 104 -------------------------------~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EF 151 (452)
...|+.+||+||||||||++ ++|++|||+||||||||.++|+|| +||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~-~~~l~rVfeIgP~FRAE~s~T~RHL~EF 350 (572)
T PLN02221 272 KIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETY-ACALSSVYTFGPTFRAENSHTSRHLAEF 350 (572)
T ss_pred hhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHH-HHhcCCeEEEccceecCCCCCCcccccc
Confidence 01255668999999999995 567999999999999999999999 999
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC------------C----------CCCCCceeeHHHHHHHhCCCCCCC
Q 043787 152 TQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV------------Q----------LPNPFPRLTYAEAMSRYGSDRPDT 209 (452)
Q Consensus 152 tqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~------------~----------l~~pf~rity~eA~~~~g~dkpd~ 209 (452)
||||+||+|.|++|+|+++|+||+++++.+++. + +..||+||||.||++.+.....
T Consensus 351 tmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~-- 428 (572)
T PLN02221 351 WMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVA-- 428 (572)
T ss_pred cceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhh--
Confidence 999999999999999999999999999876531 1 2368999999999998632100
Q ss_pred cccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccc
Q 043787 210 RFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIP 289 (452)
Q Consensus 210 r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~ 289 (452)
.+.+ +.. . .
T Consensus 429 -~g~~-------------------------------------~~~-~----------------------------~---- 437 (572)
T PLN02221 429 -KGKE-------------------------------------FDN-N----------------------------V---- 437 (572)
T ss_pred -cCCC-------------------------------------CCC-C----------------------------c----
Confidence 0000 000 0 0
Q ss_pred cccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCccccccc
Q 043787 290 ALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLE 369 (452)
Q Consensus 290 ~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~ 369 (452)
.+...|+.+. ...|++.+. -.++||+|||.-
T Consensus 438 ~~G~dl~~e~---------------------------------Er~L~~~~~------~~pvfv~dyP~~---------- 468 (572)
T PLN02221 438 EWGIDLASEH---------------------------------ERYLTEVLF------QKPLIVYNYPKG---------- 468 (572)
T ss_pred chhhhhhHHH---------------------------------HHHHHHHhc------CCcEEEEcCChh----------
Confidence 0001122111 123444321 257999999974
Q ss_pred ccccCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCC
Q 043787 370 ALHHPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNC 448 (452)
Q Consensus 370 a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~ 448 (452)
..||+|+.++|.. .+.+|||.++|+ ||.|||+|+|+++.....++..|++++.++| ||+|++|| |
T Consensus 469 --~~pfy~~~~~d~~-----~~~~fDLl~~g~~El~~g~~R~~r~e~l~~~~~~~g~~~~~~~~----yLda~~~G---~ 534 (572)
T PLN02221 469 --IKAFYMRLNDDEK-----TVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEW----YLDLRRYG---T 534 (572)
T ss_pred --hCcccccCCCCCc-----eEEEEEEecCCceEECCHHHHHHHHHHHHHHHHHcCCChhhhHH----HHHHhhCC---C
Confidence 7899987655432 457999999997 9999999999999999999999999999999 99999999 9
Q ss_pred CCCC
Q 043787 449 QPQT 452 (452)
Q Consensus 449 ~p~~ 452 (452)
|||.
T Consensus 535 pPh~ 538 (572)
T PLN02221 535 VKHC 538 (572)
T ss_pred CCCc
Confidence 9994
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=482.09 Aligned_cols=318 Identities=28% Similarity=0.453 Sum_probs=242.9
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++++|||+|..++|+.... ..++++|+++|||||| ++.+++++++||++++++|+||.+ +||+
T Consensus 120 ~~ge~el~~~~~~vls~~~~plP~~~~~------~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~-~gF~ 192 (491)
T PRK00484 120 KTGELSVKATELTLLTKSLRPLPDKFHG------LTDVETRYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDN-RGFL 192 (491)
T ss_pred CCCcEEEEEeEEEEEeccCCCCCccccc------ccchhhhccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 5799999999999999997678876532 3578999999999997 899999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++|| ++|.++.+. .+..+||+||||+|+|+||++|++||||||||||||+++++|+||||||||||
T Consensus 193 EVeTPiL~~~-~~Ga~a~pF~t~~~~-~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~ 270 (491)
T PRK00484 193 EVETPMLQPI-AGGAAARPFITHHNA-LDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQ 270 (491)
T ss_pred EEECCceecc-CCCccceeeeecccc-CCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCCCcCCceEEEEEEE
Confidence 9999999854 6665 466655432 24556799999999999999999999999999999999997779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||+++++.+++ ++++.||+||||.||++.+...++. +.
T Consensus 271 a~~d~~d~m~~~E~li~~i~~~~~~~~~i~~~~~~~~~~~pf~rity~eai~~~~g~~~~--------~~---------- 332 (491)
T PRK00484 271 AYADYNDMMDLTEELIRHLAQAVLGTTKVTYQGTEIDFGPPFKRLTMVDAIKEYTGVDFD--------DM---------- 332 (491)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHhCCceEecCCEeecCCCCceEEEHHHHHHHHhCCCcc--------cC----------
Confidence 9999999999999999999998865 3566899999999999998532110 00
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
+... ....+++.|.+ + ..+ + + ...+
T Consensus 333 ------------------------~~~~-----~~~~~~~~~~~---~----~~~-~----------~---~~~l----- 357 (491)
T PRK00484 333 ------------------------TDEE-----ARALAKELGIE---V----EKS-W----------G---LGKL----- 357 (491)
T ss_pred ------------------------CHHH-----HHHHHHHcCCC---C----CCC-C----------C---HHHH-----
Confidence 0000 00111111110 0 000 0 0 0000
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHH-HHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRT-FVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLS 387 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~-~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~ 387 (452)
+..+=. .+...+ ..++||+|||.- .-||++++++|..
T Consensus 358 --------------------~~~l~~~~ve~~~-------~~P~Fi~dyP~~------------~~pf~k~~~~~~~--- 395 (491)
T PRK00484 358 --------------------INELFEEFVEPKL-------IQPTFITDYPVE------------ISPLAKRHREDPG--- 395 (491)
T ss_pred --------------------HHHHHHHHhhhhc-------CCcEEEECCChH------------HhhhhccCCCCCC---
Confidence 111110 111222 258999999974 6799998877654
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHHH------cCCCHH-HH-hhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI------VGISPE-QF-IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~------lg~~~~-~~-~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.+||+||++|+.|+||++.|++.|+. .|.++. .+ +| ||+|++|| +|||.
T Consensus 396 --~~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~----yl~a~~~G---~PP~g 459 (491)
T PRK00484 396 --LTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDED----FLRALEYG---MPPTG 459 (491)
T ss_pred --eEEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHH----HHHHHHCC---CCCCC
Confidence 689999999999999999999999999999953 343332 13 46 99999999 99994
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=472.16 Aligned_cols=321 Identities=25% Similarity=0.455 Sum_probs=244.0
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++++|||+|..++|....+ ..+.++|+++||||+| ++..++++++||+|++++|+||.+ +||+
T Consensus 132 ~~gelel~~~~~~llsk~~~plP~~~~~------~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~-~gFi 204 (505)
T PRK12445 132 QTGELSIHCTELRLLTKALRPLPDKFHG------LQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFM 204 (505)
T ss_pred CCCcEEEEEeEEEEEecCCCCCCccccc------ccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 5899999999999999997678875532 3578999999999998 699999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCc--cceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGAR--DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~--~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|++. ++||. +|.++... .+..+||+||||||+|+|+++|++|||+||||||||+++++|+||||||||||
T Consensus 205 EVeTPiL~~~-~gGa~a~pF~t~~~~-~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~ 282 (505)
T PRK12445 205 EVETPMMQVI-PGGASARPFITHHNA-LDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYM 282 (505)
T ss_pred EeeCCeeEec-CCCCcccceeccccc-CCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCCCcCcccceeeeee
Confidence 9999999865 56654 56544332 34556799999999999999999999999999999999766669999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++++|+++|+||++++..+++ +++..||+||||.||++.|+.. .|.. ...+
T Consensus 283 a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~~~-~~~~---~~~~----------- 347 (505)
T PRK12445 283 AYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-TDMA---DLDN----------- 347 (505)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHhCC-CCcc---ccCC-----------
Confidence 9999999999999999999988764 2556799999999999998531 1110 0000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
+ . .+...+++.|.+ . +.+ + + .
T Consensus 348 -----------------------~--~-----~~~~~~~~~~~~---~----~~~-~----------~---~-------- 368 (505)
T PRK12445 348 -----------------------F--D-----AAKALAESIGIT---V----EKS-W----------G---L-------- 368 (505)
T ss_pred -----------------------H--H-----HHHHHHHHcCCC---C----CCC-C----------C---H--------
Confidence 0 0 001122221110 0 000 0 0 0
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
...+..+-.++.+.. + ..|+||+|||.- .-||++++++|..
T Consensus 369 -----------------~~l~~~~~~~~vE~~-l-----~~P~Fv~dyP~~------------~splak~~~~~p~---- 409 (505)
T PRK12445 369 -----------------GRIVTEIFDEVAEAH-L-----IQPTFITEYPAE------------VSPLARRNDVNPE---- 409 (505)
T ss_pred -----------------HHHHHHHHHHHHHhh-c-----CCCEEEECCCch------------hCcccccCCCCCC----
Confidence 011111111222211 1 268999999974 6799988766654
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHH------HcCCCHHHH--hhhhhhhhhhhhcCCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE------IVGISPEQF--IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~------~lg~~~~~~--~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.+||.||+||+.|+||++.|+..|+ ..|.++... +| ||+||+|| ||||.
T Consensus 410 -~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~----yl~al~yG---~PP~g 473 (505)
T PRK12445 410 -ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDED----YVTALEYG---LPPTA 473 (505)
T ss_pred -ceEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHH----HHHHHHcC---CCCCC
Confidence 68999999999999999999999999999996 347665543 56 99999999 99993
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-56 Score=469.48 Aligned_cols=323 Identities=29% Similarity=0.503 Sum_probs=244.7
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++++|||+|..++|....+ ..+.++|+++|||||| ++.+++++++||+|++++|+||.+ +||+
T Consensus 120 ~~gelel~~~~i~ilsk~~~plP~k~~~------~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~-~gF~ 192 (496)
T TIGR00499 120 KTGELSVHVTELQILTKALRPLPDKFHG------LTDQETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDD-RGFI 192 (496)
T ss_pred CCCcEEEEeeEEEEEecCCCCCCccccc------cCChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CcCE
Confidence 5799999999999999997677765432 3578999999999999 689999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++. +|| ++|.+..+. .+...||+||||||+|+|+++|++|||+||||||||+++++|+||||||||||
T Consensus 193 EVeTP~L~~~~-gga~a~pF~t~~~~-~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~ 270 (496)
T TIGR00499 193 EVETPMLQVIP-GGANARPFITHHNA-LDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQ 270 (496)
T ss_pred EEeCCeeecCC-CCccceeEEeeccc-CCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCCCcccchhheeehhh
Confidence 99999998764 455 457665432 35556799999999999999999999999999999999986779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||++++..+.+ ++++.||+||||.||++.|+... +....+..+
T Consensus 271 a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~~~pf~rit~~eai~~~~~~~-----g~~~~~~~~-------- 337 (496)
T TIGR00499 271 AYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEAIKKYDMET-----GIDFDDLKD-------- 337 (496)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHHHhc-----CCCchhcCC--------
Confidence 9999999999999999999988753 35667999999999999775211 000000000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
. . .+...+++.|.+ + .+.. . +
T Consensus 338 -----------------------~--~-----~l~~~~~~~~~~---~---~~~~-~----------~------------ 358 (496)
T TIGR00499 338 -----------------------F--E-----TAKALAKKIGIE---V---AEKS-L----------T------------ 358 (496)
T ss_pred -----------------------H--H-----HHHHHHHHcCCC---c---CCCC-C----------C------------
Confidence 0 0 001122222211 0 0000 0 0
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHH-HHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRT-FVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLS 387 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~-~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~ 387 (452)
....|..+-. ++...+ ..|+||+|||.- .-||+++++++..
T Consensus 359 ----------------~~~~l~~~~~~~ve~~l-------~~P~fv~dyP~~------------~splak~~~~~p~--- 400 (496)
T TIGR00499 359 ----------------LGHILNELFEQFLEHTL-------IQPTFITHYPAE------------ISPLAKRNPSNPE--- 400 (496)
T ss_pred ----------------HHHHHHHHHHHHHHhcc-------CCCEEEECCchh------------cCcccccCCCCCC---
Confidence 0011111111 122222 358999999974 5799888877654
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHH------HcCCCHHHH--hhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE------IVGISPEQF--IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~------~lg~~~~~~--~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+.+|||.+||+||++|+.|+|||+.|++.|+ ..|.+++.. +| ||+|++|| +|||.
T Consensus 401 --~~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~----yl~a~~~G---~PP~g 464 (496)
T TIGR00499 401 --FTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDED----FVEALEYG---MPPTG 464 (496)
T ss_pred --eEEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHH----HHHHHHcC---CCCCc
Confidence 68999999999999999999999999999985 467776654 56 99999999 99994
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-57 Score=447.84 Aligned_cols=325 Identities=28% Similarity=0.450 Sum_probs=251.2
Q ss_pred CCceEEEEeEEEEEecCCCCCCccccccccc-------------CCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHH
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDA-------------KDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLI 69 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~-------------~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~i 69 (452)
++++||++.+|.|+|.+.+.+|++++|.... ...++.++||+||.||||+|..|+++|+++.++.++
T Consensus 159 ~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFriq~gvc~~F 238 (533)
T KOG0556|consen 159 VQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFRIQAGVCFAF 238 (533)
T ss_pred cceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchheeehHHHHHHHH
Confidence 5789999999999999988999998765321 123478999999999999999999999999999999
Q ss_pred HHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-
Q 043787 70 RRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ- 148 (452)
Q Consensus 70 R~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~- 148 (452)
|+||.. +||+||+||.|..++.||+...|..+++ +...||+|||||||||+++++++|||+|||+||+|+|++.||
T Consensus 239 Re~L~~-kgF~EIhTpKli~asSEGGanvF~v~Yf--k~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhl 315 (533)
T KOG0556|consen 239 REYLRS-KGFVEIHTPKLIGASSEGGANVFRVSYF--KQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHL 315 (533)
T ss_pred HHHHHh-cCcceecccccccccCCCCceeEEEEec--cCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhh
Confidence 999988 9999999999999999987776654443 344579999999999999999999999999999999999999
Q ss_pred cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCcc
Q 043787 149 PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPF 227 (452)
Q Consensus 149 ~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f 227 (452)
.||+-||+||+|. +|+++|+++.+++..||+.+.. .|.+-++..+.-.|-- .|
T Consensus 316 tEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~e----------ry~~Eie~Vr~qyp~e----------------~f 369 (533)
T KOG0556|consen 316 TEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRE----------RYAKEIETVRKQYPFE----------------PF 369 (533)
T ss_pred HHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhcCCCc----------------cc
Confidence 8999999999997 8999999999999999987631 2333333333322210 01
Q ss_pred ccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHh
Q 043787 228 RVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRC 307 (452)
Q Consensus 228 ~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~ 307 (452)
+.. .+...+.|+.+. +-.+..|. |.|.. .+|+.
T Consensus 370 kf~-------~~~lrl~~~e~v--------------~mLreaGv---------E~g~~-------dDlsT---------- 402 (533)
T KOG0556|consen 370 KFL-------EPPLRLTFKEGV--------------AMLREAGV---------EMGDE-------DDLST---------- 402 (533)
T ss_pred ccC-------CCceEeehHHHH--------------HHHHHcCc---------ccCCc-------cccCC----------
Confidence 000 011111111110 00111111 11100 11221
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccCh
Q 043787 308 SAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDL 386 (452)
Q Consensus 308 ~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~ 386 (452)
...+.||+|=+ +.++ -.|.-+.+||+- -.|| |||.+++..
T Consensus 403 ----------------e~Ek~LG~lV~---eky~------tdfyildkyP~a------------vRPFYTmpd~~~p~-- 443 (533)
T KOG0556|consen 403 ----------------ESEKKLGQLVR---EKYD------TDFYILDKYPLA------------VRPFYTMPDPENPR-- 443 (533)
T ss_pred ----------------hhHHHHHHHHH---HHhC------CcEEEEccCccc------------cccccccCCCCCCC--
Confidence 22355676633 3343 578999999984 6889 999988875
Q ss_pred hhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 387 SSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
-++|||+.|.|.||-+|.+||||+++..+-.+..|+|+..+.. |+|+++|| ||||.
T Consensus 444 ---ySnSyD~fmRGeEIlSGAQRIhdpe~L~era~~hGid~~~i~~----YidsFryG---~PPHa 499 (533)
T KOG0556|consen 444 ---YSNSYDFFMRGEEILSGAQRIHDPELLVERAKEHGIDPSKIST----YIDSFRYG---APPHA 499 (533)
T ss_pred ---cccchhheechhhhhccccccCCHHHHHHHHHHcCCCHHHHHH----HHHHhccC---CCCCC
Confidence 6999999999999999999999999999999999999999998 99999999 99994
|
|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=434.47 Aligned_cols=246 Identities=60% Similarity=1.069 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeee
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCF 138 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~F 138 (452)
|++||++++++|+||.+ +||+||+||+|+.++++|+++|.+++....+.+|+|+||||+|||+|+++|++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~-~gfiEV~TP~L~~~~~~g~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDE-QGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHH-CCCEEEeCCeeecCCCCCCCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 57899999999999998 99999999999999999999988876544577888999999999999999999999999999
Q ss_pred ecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCccccccccc
Q 043787 139 RDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDV 218 (452)
Q Consensus 139 R~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~ 218 (452)
|+|.+++.||+||||+|||++|.|++++|+++|+||++++..+.+..+..||+||||.||++.||.
T Consensus 80 R~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~~~~~p~~rity~eA~~~~~~-------------- 145 (280)
T cd00777 80 RDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGVELTTPFPRMTYAEAMERYGF-------------- 145 (280)
T ss_pred eCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeHHHHHHHhCC--------------
Confidence 999999999999999999999999999999999999999999888777789999999999987541
Q ss_pred ccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChh
Q 043787 219 SDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPS 298 (452)
Q Consensus 219 ~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~ 298 (452)
T Consensus 146 -------------------------------------------------------------------------------- 145 (280)
T cd00777 146 -------------------------------------------------------------------------------- 145 (280)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCC
Q 043787 299 NKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAP 378 (452)
Q Consensus 299 ~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P 378 (452)
++.|++|||+.+++.+.+++...||||+||
T Consensus 146 --------------------------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~pf~~~ 175 (280)
T cd00777 146 --------------------------------------------------KFLWIVDFPLFEWDEEEGRLVSAHHPFTAP 175 (280)
T ss_pred --------------------------------------------------CCccccCCcccCChhHHHHHHHHhCCCcCC
Confidence 012455666555555555666779999998
Q ss_pred CCCCcc----ChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 379 NPEDMD----DLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 379 ~~ed~~----~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.++|.. ++..-.+.+|||++||+||+|||.|+||++.|+..|+..|++++++...+.+||+|++|| ||||.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G---~pP~~ 250 (280)
T cd00777 176 KEEDLDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYG---APPHG 250 (280)
T ss_pred CcccchhhhcCCccCeeEEEEEEeCCEEEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCC---CCCCC
Confidence 776532 232246899999999999999999999999999999999999655444444599999999 99993
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=456.32 Aligned_cols=331 Identities=20% Similarity=0.368 Sum_probs=241.2
Q ss_pred CCCceEEEEeEEEEEecCC-CCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 043787 2 KTGFIEVAVEHVQVLNAVR-SKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGF 79 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~-~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF 79 (452)
++|++||.|++++|||+|. ..+|+.+.. .+.+...+.++|+++|||||| ++.+++++++||+|+++||+||.+ +||
T Consensus 175 ~~GeleI~~~~i~lLska~~~~~~~~p~~-~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~-~gF 252 (659)
T PTZ00385 175 QRGELSVAASRMLILSPYVCTDQVVCPNL-RGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNE-RNF 252 (659)
T ss_pred CCceEEEEeeEEEEechhhhccccCCCCC-ccccccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 5799999999999999953 233321110 011234689999999999996 788999999999999999999988 999
Q ss_pred EEEcCceEeecCCC-CCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 80 VEIETPVLSRSTPE-GARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 80 ~EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
+||+||+|++++++ ||++|.++++. .+..+||+||||||+|+||++|++||||||||||||+++++|+|||||||||+
T Consensus 253 lEVeTPiL~~~~~ga~a~pF~t~~n~-~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~ 331 (659)
T PTZ00385 253 VEVETPVLHTVASGANAKSFVTHHNA-NAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYA 331 (659)
T ss_pred EEeeCCEeeccCCCCCccceEeeccc-CCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCCccccccceeeee
Confidence 99999999887666 45777666542 24456799999999999999999999999999999999977779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC-----------------CCCCCCCceeeHHHHHHHh-CCCCCCCccccccccccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD-----------------VQLPNPFPRLTYAEAMSRY-GSDRPDTRFSLQLNDVSD 220 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~pf~rity~eA~~~~-g~dkpd~r~~~~~~~~~~ 220 (452)
+|+|++++|+++|+|+++++..+.+ +++..||+||||.|++..+ |.|-++ ..+
T Consensus 332 a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~---------~~d 402 (659)
T PTZ00385 332 AYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPP---------PNE 402 (659)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCc---------ccc
Confidence 9999999999999999999987642 2344699999966666555 433211 001
Q ss_pred ccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhH
Q 043787 221 IFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300 (452)
Q Consensus 221 ~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~ 300 (452)
+-... .++. ....+++.|..
T Consensus 403 l~~~~------------------------------e~~~--~~~~~~~~gi~---------------------------- 422 (659)
T PTZ00385 403 LNTPK------------------------------GIAY--MSVVMLRYNIP---------------------------- 422 (659)
T ss_pred CCCHH------------------------------HHHH--HHHHHHHcCCC----------------------------
Confidence 00000 0000 00112222210
Q ss_pred HHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCC
Q 043787 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNP 380 (452)
Q Consensus 301 ~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ 380 (452)
..+ ...+|.+...+-+.+ +.+.-..|+||+|||.- --||+++++
T Consensus 423 ----------~~~------------~~~~g~~~~~lfe~~--ve~~l~qPtFI~dyP~e------------~sPLak~~~ 466 (659)
T PTZ00385 423 ----------LPP------------VRTAAKMFEKLIDFF--ITDRVVEPTFVMDHPLF------------MSPLAKEQV 466 (659)
T ss_pred ----------CCc------------ccchhHHHHHHHHHH--HHHhhCCcEEEeCCccc------------cCcccccCC
Confidence 000 001222222222211 00001368999999974 568988887
Q ss_pred CCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHH-----HHcCCCHHHH---hhhhhhhhhhhhcCCCCCCCCC
Q 043787 381 EDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVL-----EIVGISPEQF---IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 381 ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if-----~~lg~~~~~~---~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+|.. .+..|||.+||.||++|..|+||+..|++.| +.-+.+++.. ++ ||+||+|| ||||.
T Consensus 467 ~dp~-----~teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~Ded----fL~AleyG---mPPtg 534 (659)
T PTZ00385 467 SRPG-----LAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDET----FLKSLQVG---LPPTA 534 (659)
T ss_pred CCCC-----eEEEEEEEeCCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHH----HHHHHHcC---CCCCC
Confidence 7765 7899999999999999999999999999999 4456666655 55 99999999 99993
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=450.74 Aligned_cols=327 Identities=23% Similarity=0.376 Sum_probs=241.4
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.+++|+||++|..++|.... ...+.++|+++||||+| ++..+++|++||+|+++||+||.+ +||+
T Consensus 177 ~~gelel~~~~i~vLs~~l~plP~k~~------~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~-~gF~ 249 (553)
T PLN02502 177 KKGELSIFPTSFEVLTKCLLMLPDKYH------GLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFLDD-RGFL 249 (553)
T ss_pred CCCCEEEEEeEEEEEeccCCCCCcccc------cccchhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 579999999999999999766776442 23678999999999995 899999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCc--cceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGAR--DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~--~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++. +||. +|.+... ..+..+||+||||||+|+|+++|++|||+||||||||+++++|+||||||||||
T Consensus 250 EVeTPiL~~~~-gGA~a~pF~t~~n-~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~ 327 (553)
T PLN02502 250 EVETPMLNMIA-GGAAARPFVTHHN-DLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQ 327 (553)
T ss_pred EEECCeeeccC-CCccccceeeecc-cCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCCccccceeehhhhh
Confidence 99999999764 5653 5554322 235677899999999999999999999999999999999996679999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||++++..+.+ +++..||+|+||.||++.+...+... .+. ..+.
T Consensus 328 a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~--~~~---~~~~------- 395 (553)
T PLN02502 328 AYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA--DLK---SDEA------- 395 (553)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc--CCC---HHHH-------
Confidence 9999999999999999999988753 35568999999999999985322110 000 0000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
... +...+++.|.+ + ... .
T Consensus 396 -------------------------~~~-----l~~~~~~~~~~------~-~~~-~----------------------- 414 (553)
T PLN02502 396 -------------------------NAY-----LIAACEKFDVK------C-PPP-Q----------------------- 414 (553)
T ss_pred -------------------------HHH-----HHHHHHHcCCC------C-CCC-C-----------------------
Confidence 000 00111121110 0 000 0
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHH-HHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRT-FVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLS 387 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~-~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~ 387 (452)
.....|..+-. ++...+ ..++||+|||.- .-||++++++|..
T Consensus 415 ---------------~~~~~l~~l~~~~ve~~l-------~~PtFV~dyP~~------------~splak~~~~~p~--- 457 (553)
T PLN02502 415 ---------------TTGRLLNELFEEFLEETL-------VQPTFVLDHPVE------------MSPLAKPHRSKPG--- 457 (553)
T ss_pred ---------------CHhHHHHHHHHHHHHhhc-------CCCEEEECCccc------------cCcccccCCCCCC---
Confidence 00011111111 222223 258999999974 6799999887765
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHHH----cCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI----VGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~----lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
.+..|||.+||.||++|..++|||..|+..|+. .+...++...--..||+||+|| +|||-
T Consensus 458 --~~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyG---mPP~g 521 (553)
T PLN02502 458 --LTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYG---LPPTG 521 (553)
T ss_pred --eEEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcC---CCCCc
Confidence 789999999999999999999999999999932 2222222110112389999999 99993
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=477.95 Aligned_cols=320 Identities=25% Similarity=0.361 Sum_probs=243.8
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.+++++|+++|..++|.... ...+.++|+++|||||| ++.+++++++||++++++|+||.+ +||+
T Consensus 718 ~~ge~ei~~~~i~ll~k~~~plP~k~~------~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~-~gFl 790 (1094)
T PRK02983 718 RNGTLSLLVTSWRLAGKCLRPLPDKWK------GLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVA-RGFL 790 (1094)
T ss_pred CCCCEEEEEeEEEEEeccCcCCCCccc------cCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 579999999999999999766775442 24678999999999996 689999999999999999999998 9999
Q ss_pred EEcCceEeecCCCC-CccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 81 EIETPVLSRSTPEG-ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~eG-a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
||+||+|+++.+++ +++|.++.+ ..+..+||+||||+|+|+|+++|++||||||||||||+++++|+|||||||+|++
T Consensus 791 EVeTPiL~~~~gGa~a~pF~t~~~-~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a 869 (1094)
T PRK02983 791 EVETPILQQVHGGANARPFVTHIN-AYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEAYQA 869 (1094)
T ss_pred EEeCCEeeccCCCcccceeEeeec-CCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCCCccccccchhhhhh
Confidence 99999999776643 356765433 2355678999999999999999999999999999999999877799999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC---------------CCCCCCCceeeHHHHHHHhCCCCCCCccccccccccccccc
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD---------------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLE 224 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~---------------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~ 224 (452)
|.|++|+|+++|+||+++++.+.+ +++..||+||||.||++++.....+- ..+
T Consensus 870 ~~dy~d~m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~-----~~~------- 937 (1094)
T PRK02983 870 HADYDTMRDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVDISGPWPVVTVHDAVSEALGEEIDP-----DTP------- 937 (1094)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCcEEeeCCccccccccccCCCceEEEHHHHHHHHhCCCCCC-----CCC-------
Confidence 999999999999999999988754 23557999999999998764321110 000
Q ss_pred CccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHH
Q 043787 225 SPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLL 304 (452)
Q Consensus 225 ~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~ 304 (452)
... +.+.+++.|. .+ .++ .+. .++.
T Consensus 938 -----------------------------~~~-----l~~~~~~~~i---~~---~~~------------~~~---~~l~ 962 (1094)
T PRK02983 938 -----------------------------LAE-----LRKLCDAAGI---PY---RTD------------WDA---GAVV 962 (1094)
T ss_pred -----------------------------HHH-----HHHHHHHcCC---CC---CCC------------CCH---hHHH
Confidence 000 0111222111 00 000 000 0000
Q ss_pred HHhCCCCCcEEEEEcCCchhHHHHHHHHHHH-HHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCc
Q 043787 305 IRCSAGPSDLILFAVGHPASVNKTLDRLRTF-VAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDM 383 (452)
Q Consensus 305 ~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~-l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~ 383 (452)
..+=.+ +...+ ..|+||+|||.- ..||+|++++|.
T Consensus 963 -------------------------~~l~~~~ve~~~-------~~P~Fv~dyP~~------------~spla~~~~~~p 998 (1094)
T PRK02983 963 -------------------------LELYEHLVEDRT-------TFPTFYTDFPTS------------VSPLTRPHRSDP 998 (1094)
T ss_pred -------------------------HHHHHHHHHhhc-------CCCEEEECCCcc------------cccccccCCCCC
Confidence 011111 12222 368999999974 789999988775
Q ss_pred cChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHH-----cCCCHHHHh---hhhhhhhhhhhcCCCCCCCCC
Q 043787 384 DDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI-----VGISPEQFI---FAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 384 ~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~-----lg~~~~~~~---~~f~~~l~a~~~G~~~~~p~~ 452 (452)
. .+.+|||++||+|||+|..++||+..|++.|+. -+.+++.++ | ||+|++|| ||||-
T Consensus 999 ~-----~~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~----yl~al~yG---mPP~g 1063 (1094)
T PRK02983 999 G-----LAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDED----FLQALEYA---MPPTG 1063 (1094)
T ss_pred C-----eeEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHH----HHHHHHcC---CCCCC
Confidence 4 789999999999999999999999999777743 466777663 6 99999999 99993
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-53 Score=425.71 Aligned_cols=271 Identities=28% Similarity=0.514 Sum_probs=220.8
Q ss_pred CCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCH
Q 043787 37 VKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSP 116 (452)
Q Consensus 37 ~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSp 116 (452)
++.++|+++||||+|++..++++++||.+.+++|+||.+ +||+||+||+|+.+++||+.+.+.... .++.+||+|||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~-~gf~eV~TP~l~~~~~e~~~~~f~~~~--~~~~~yL~~Sp 78 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRE-NGFTEVHTPKITSTDTEGGAELFKVSY--FGKPAYLAQSP 78 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEeeCCceecCCCCccCCcccccc--CCCcceecCCH
Confidence 567899999999999999999999999999999999998 999999999999999987665443322 36778899999
Q ss_pred HHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcC-----------
Q 043787 117 QLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKD----------- 183 (452)
Q Consensus 117 Ql~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~----------- 183 (452)
|+|||+|+++ ++||||||||||+|++++.|| ||||||||||+|+ +++++|+++|+||++++..+.+
T Consensus 79 ql~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~ 157 (322)
T cd00776 79 QLYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ 157 (322)
T ss_pred HHHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc
Confidence 9999998876 999999999999999998777 9999999999999 9999999999999999975532
Q ss_pred -----CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhc
Q 043787 184 -----VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALK 258 (452)
Q Consensus 184 -----~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~ 258 (452)
..+..||+||||.||++.+....+.. +..
T Consensus 158 ~~~~~~~~~~~~~rit~~eA~~~l~~~~~~~----~~~------------------------------------------ 191 (322)
T cd00776 158 LNRELLKPLEPFPRITYDEAIELLREKGVEE----EVK------------------------------------------ 191 (322)
T ss_pred cCcccccCCCCceEEEHHHHHHHHHHcCCCC----CCC------------------------------------------
Confidence 13357999999999999874321110 000
Q ss_pred cCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHH
Q 043787 259 KGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAH 338 (452)
Q Consensus 259 ~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~ 338 (452)
. .+.++.+. -..+++
T Consensus 192 -----------------------~---------~~~l~~~~---------------------------------e~~l~~ 206 (322)
T cd00776 192 -----------------------W---------GEDLSTEH---------------------------------ERLLGE 206 (322)
T ss_pred -----------------------c---------cchhcHHH---------------------------------HHHHHH
Confidence 0 01111111 113333
Q ss_pred HcCCCCCCCccEEEEeccCCCccCcccccccccccCcCC-CCCCCccChhhhhhceeeeeecC-eEeeccccccccHHHH
Q 043787 339 ELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTA-PNPEDMDDLSSARALAYDMVYNG-VEIGGGSLRIYKREVQ 416 (452)
Q Consensus 339 ~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~-P~~ed~~~~~~v~a~~YDLVlNG-~EiGGGSiRIh~~elQ 416 (452)
.++ -.++||+|||.- ..||+| +.+++.. .+.+|||.+|| .||+|||.|+||++.|
T Consensus 207 ~~~------~~p~fi~~~P~~------------~~pfy~~~~~~~~~-----~~~~fdl~~~G~~El~~g~~r~~d~~~l 263 (322)
T cd00776 207 IVK------GDPVFVTDYPKE------------IKPFYMKPDDDNPE-----TVESFDLLMPGVGEIVGGSQRIHDYDEL 263 (322)
T ss_pred HhC------CCcEEEECCccc------------cCCceeeecCCCCC-----eeEEEEEEcCCCeEEeeceeecCCHHHH
Confidence 332 258999999974 578955 5555433 68999999999 8999999999999999
Q ss_pred HHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 417 QKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 417 ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
++.|+..|++++.++| ||+|+++| +|||.
T Consensus 264 ~~r~~~~g~~~~~~~~----yl~a~~~G---~pp~~ 292 (322)
T cd00776 264 EERIKEHGLDPESFEW----YLDLRKYG---MPPHG 292 (322)
T ss_pred HHHHHHcCCChHHHHH----HHHHHHCC---CCCCc
Confidence 9999999999999998 99999999 99994
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=441.59 Aligned_cols=324 Identities=22% Similarity=0.407 Sum_probs=240.5
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.++++++||+|..++|... . ..+.++|+++|||||| ++..++++++||+|+++||+||.+ +||+
T Consensus 202 ~~gel~i~~~~i~llsk~l~~lP~~~-g------~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~-rGFl 273 (585)
T PTZ00417 202 KKGELSIFPKETIILSPCLHMLPMKY-G------LKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLND-RGFI 273 (585)
T ss_pred CCceEEEEEEEEEEEecCCCCCCccc-C------CCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCeE
Confidence 47999999999999999977888764 1 2467899999999998 899999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCc--cceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGAR--DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~--~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++||. +|.++.. ..+..+||++|||||+|+|+++|++||||||||||||+++++|+|||||||||+
T Consensus 274 EVeTPiL~~~-~GGA~a~PF~T~~n-~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ 351 (585)
T PTZ00417 274 EVETPTMNLV-AGGANARPFITHHN-DLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYW 351 (585)
T ss_pred EEeCCeeecc-CCcccceeEEeccc-CCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCCCCCccceeeeeeeee
Confidence 9999999987 45765 4444333 235667899999999999999999999999999999999987779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC-----------------CCCCCCCceeeHHHHHHHhCC-CCCCCccccccccccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD-----------------VQLPNPFPRLTYAEAMSRYGS-DRPDTRFSLQLNDVSD 220 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~pf~rity~eA~~~~g~-dkpd~r~~~~~~~~~~ 220 (452)
+|+|++|+|+++|+||++++..+.+ +++..||+|+||.||++.+.. |-+. .++. .
T Consensus 352 ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~-~~~~----~-- 424 (585)
T PTZ00417 352 AYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQ-PFDS----P-- 424 (585)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhCCCccc-cccc----c--
Confidence 9999999999999999999987753 235579999999999998843 2110 0000 0
Q ss_pred ccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhH
Q 043787 221 IFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300 (452)
Q Consensus 221 ~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~ 300 (452)
-+.. ++...+++.|.+ + ...
T Consensus 425 -------------------------------~~~~-----el~~~l~~~g~~---~----~~~----------------- 444 (585)
T PTZ00417 425 -------------------------------ETIN-----KMINLIKENKIE---M----PNP----------------- 444 (585)
T ss_pred -------------------------------CCHH-----HHHHHHHHcCCC---C----CCC-----------------
Confidence 0000 011122222210 0 000
Q ss_pred HHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHH-HHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCC
Q 043787 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRT-FVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPN 379 (452)
Q Consensus 301 ~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~-~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~ 379 (452)
......++.+=. .+...++ -.|+||+|||.- .-||+..+
T Consensus 445 ----------------------~~~~~~l~~l~e~~vE~~l~------~~PtFI~dyP~~------------~sPLak~~ 484 (585)
T PTZ00417 445 ----------------------PTAAKLLDQLASHFIENKYP------NKPFFIIEHPQI------------MSPLAKYH 484 (585)
T ss_pred ----------------------CCHHHHHHHHHHHHHHHhhC------CCcEEEECCChh------------hCchhhhc
Confidence 000111222211 2223332 148999999974 67897666
Q ss_pred CCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHH------HcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 380 PEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE------IVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 380 ~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~------~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
++|.. .+..|||.+||.||+.|..++||+..|++.|+ ..| +++...+-. .||+|++|| ||||.
T Consensus 485 ~~dp~-----v~eRFELfi~G~EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~De-dfl~AleyG---mPPtg 553 (585)
T PTZ00417 485 RSKPG-----LTERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDA-AFCTSLEYG---LPPTG 553 (585)
T ss_pred CCCCC-----eEEeEEeEECCEEEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHH-HHHHHHHcC---CCCCc
Confidence 55543 68999999999999999999999999998773 234 444433222 279999999 99983
|
|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-53 Score=421.56 Aligned_cols=298 Identities=24% Similarity=0.358 Sum_probs=249.5
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
.++||+.|++|.++|.++.+||++++ ..+.+.+++..||+.|+..+.+++|+||.+..++++||.+ ++|++|
T Consensus 83 ~q~iel~~eki~~vG~v~~~ypl~Kk-------~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~-~~F~~i 154 (446)
T KOG0554|consen 83 KQQIELNAEKIKVVGTVDESYPLQKK-------KLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQS-HDFTYI 154 (446)
T ss_pred heeeeeeeeEEEEEeecCCCCCCccc-------cCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-cCceEe
Confidence 46899999999999999878998875 4788899999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccce-eeccc-----CCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeee
Q 043787 83 ETPVLSRSTPEGARDYL-VPSRV-----QPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLD 155 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~-v~~~~-----~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe 155 (452)
.||+||+++||||+|.| |.+.. ..|+..||++|.|||.+. |+++++|||.+|||||+|.+++.|| .||||||
T Consensus 155 ~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlE 233 (446)
T KOG0554|consen 155 NTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRAENSHTSRHLAEFWMLE 233 (446)
T ss_pred cCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceecccCCchhHHhhhhhhh
Confidence 99999999999999987 43221 125666899999999999 6899999999999999999999999 8999999
Q ss_pred eeecCCC-HHHHHHHHHHHHHHHHHHhcCC----------------------CCCCCCceeeHHHHHHHhCCCCCCCccc
Q 043787 156 MELAFTP-LDDMLRLNEDLIRKIFLEIKDV----------------------QLPNPFPRLTYAEAMSRYGSDRPDTRFS 212 (452)
Q Consensus 156 ~e~~f~~-~~dlm~~~E~li~~i~~~~~~~----------------------~l~~pf~rity~eA~~~~g~dkpd~r~~ 212 (452)
.|++|++ ++|+|.++|.+++++++.+++. .+..+|.||||.||++.+...+- ..|.
T Consensus 234 aE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t-~~fk 312 (446)
T KOG0554|consen 234 AELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVT-KKFK 312 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcc-cccc
Confidence 9999996 9999999999999999887642 11245789999999998743321 0011
Q ss_pred ccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccccc
Q 043787 213 LQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALV 292 (452)
Q Consensus 213 ~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 292 (452)
....|.
T Consensus 313 ~~~kwG-------------------------------------------------------------------------- 318 (446)
T KOG0554|consen 313 TPPKWG-------------------------------------------------------------------------- 318 (446)
T ss_pred cCcccc--------------------------------------------------------------------------
Confidence 111111
Q ss_pred ccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccc
Q 043787 293 SSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALH 372 (452)
Q Consensus 293 k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~H 372 (452)
..|+.|. +.+|++.++ -+|++|+|||.- .
T Consensus 319 ~~l~~eh---------------------------------e~yL~~~~~------~~PVfV~dYP~~------------i 347 (446)
T KOG0554|consen 319 IDLSTEH---------------------------------EKYLVEECF------KKPVFVTDYPKG------------I 347 (446)
T ss_pred cccchhh---------------------------------HHHHHHHhc------CCCEEEEecccc------------c
Confidence 1122222 235556554 379999999974 8
Q ss_pred cCcCCCCCCCccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 373 HPFTAPNPEDMDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 373 HPFT~P~~ed~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+||+|..++|.+ +..|+||+++|+ ||.|||+|..+ .+.++..|+++++++| |||+|||| .+||
T Consensus 348 KpFYMr~n~~~~-----tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~eW----YldLRryG---~vph 411 (446)
T KOG0554|consen 348 KPFYMRLNDDGK-----TVAAFDLLVPGVGELIGGSLREER----KARLKERGLTREELEW----YLDLRRYG---SVPH 411 (446)
T ss_pred cceEEEecCCCC-----eeEEEEeecccchhhcCcccchhh----HHHHHhcCCCccccce----ehhhhhcC---CCCC
Confidence 999999888764 678999999999 99999999999 8889999999999999 99999999 8888
|
|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=409.97 Aligned_cols=270 Identities=26% Similarity=0.375 Sum_probs=214.2
Q ss_pred CCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCcc-----ceeecccCCCceee
Q 043787 37 VKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARD-----YLVPSRVQPGTFYA 111 (452)
Q Consensus 37 ~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~-----~~v~~~~~~g~~~~ 111 (452)
.+.++|+++|++++|++.+++++++||+|++++|+||.+ +||+||+||+|++++++|++. +.+......|+.+|
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~-~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 86 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDG-RGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYY 86 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEeCCeEecCCCCCCCccccCCccccccccCCCcee
Confidence 467899999999999999999999999999999999998 999999999999998886543 33211112367789
Q ss_pred ecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCC--CCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcC-----
Q 043787 112 LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRA--DRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKD----- 183 (452)
Q Consensus 112 L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~--~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~----- 183 (452)
|+||||+|||++ ++|++||||||||||||++++ .|| |||||||||++|.|++++|+++|+||++++..+.+
T Consensus 87 L~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 87 LADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred eccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999985 567999999999999999998 455 99999999999999999999999999999975542
Q ss_pred -----C---CCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchh
Q 043787 184 -----V---QLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNT 255 (452)
Q Consensus 184 -----~---~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~ 255 (452)
. .++.||+||||.||++.+.....+. .+
T Consensus 166 i~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~~------~~-------------------------------------- 201 (335)
T PRK06462 166 LEFFGRDLPHLKRPFKRITHKEAVEILNEEGCRG------ID-------------------------------------- 201 (335)
T ss_pred HHhcCCccccCCCCCeEEEHHHHHHHHHhcCCCc------ch--------------------------------------
Confidence 1 2347999999999998753211000 00
Q ss_pred hhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHH
Q 043787 256 ALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTF 335 (452)
Q Consensus 256 ~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~ 335 (452)
+ +.++.+.. ..
T Consensus 202 ---------------------------~---------~~l~~~~E---------------------------------~~ 212 (335)
T PRK06462 202 ---------------------------L---------EELGSEGE---------------------------------KS 212 (335)
T ss_pred ---------------------------H---------HHHhHHHH---------------------------------HH
Confidence 0 00000000 02
Q ss_pred HHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCC-CCCCccChhhhhhceeeeeec-Ce-Eeecccccccc
Q 043787 336 VAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAP-NPEDMDDLSSARALAYDMVYN-GV-EIGGGSLRIYK 412 (452)
Q Consensus 336 l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P-~~ed~~~~~~v~a~~YDLVlN-G~-EiGGGSiRIh~ 412 (452)
+.+.++ .++||+|||.- ..||+|. ++++.. .+.+|||.+. |+ ||.|||.|+|+
T Consensus 213 l~~~~~-------~p~fi~~yP~~------------~~pfy~~~~~~~~~-----~~~rFdL~~~~g~gEl~~g~er~~~ 268 (335)
T PRK06462 213 LSEHFE-------EPFWIIDIPKG------------SREFYDREDPERPG-----VLRNYDLLLPEGYGEAVSGGEREYE 268 (335)
T ss_pred HHHHhC-------CCEEEECCChh------------hCCcccccCCCCCC-----EEEEEEEEeeCCCcEEeeeEEEecC
Confidence 223232 57999999973 4689875 344433 5789999993 65 99999999999
Q ss_pred HHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 413 REVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 413 ~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
++.+...++..|++++..+| ||+|++|| +|||.
T Consensus 269 ~~~l~~~~~~~g~~~~~~~~----yl~a~~~G---~pp~~ 301 (335)
T PRK06462 269 YEEIVERIREHGVDPEKYKW----YLEMAKEG---PLPSA 301 (335)
T ss_pred HHHHHHHHHHcCCChHHHHH----HHHHHHCC---CCCCC
Confidence 99999999999999998888 99999999 99994
|
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=396.93 Aligned_cols=278 Identities=24% Similarity=0.377 Sum_probs=204.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCc-cceeecccCCCceeeecCCHHHHHHHHhhcCCCc
Q 043787 52 RQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR-DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDK 130 (452)
Q Consensus 52 ~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~-~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~r 130 (452)
++.+++++++||++++++|+||.+ +||+||+||+|++++++++. .|.++.. ..++.+||+||||+|+|+||++|++|
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~-~gf~EV~TP~L~~~~~~~~~~~f~~~~~-~~~~~~yL~~Spql~~k~ll~~g~~~ 78 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDD-RGFLEVETPMLQPIAGGAAARPFITHHN-ALDMDLYLRIAPELYLKRLIVGGFER 78 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCccccCCCCccceeEEeccC-CCCcceeeccCHHHHHHHHHhcCCCc
Confidence 467899999999999999999998 99999999999977655443 4545433 23566789999999999999999999
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMS 200 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~ 200 (452)
|||||||||+|+++++|.||||||||||+|++++++|+++|++|++++..+.+ ..++.||+||||.||++
T Consensus 79 vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~ 158 (329)
T cd00775 79 VYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALK 158 (329)
T ss_pred EEEEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCCccccCCCCceEEEHHHHHH
Confidence 99999999999998655599999999999999999999999999999987765 13346999999999999
Q ss_pred HhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCC-CCccEEEE
Q 043787 201 RYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGA-KGLPFLKV 279 (452)
Q Consensus 201 ~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~-~gl~~~~~ 279 (452)
++....+. +.++.. .. +..+..|. .|..+
T Consensus 159 ~~~g~~~~--------~~~~~~------------------------------~~---------~~~~~~~~~~~~~~--- 188 (329)
T cd00775 159 EKTGIDFP--------ELDLEQ------------------------------PE---------ELAKLLAKLIKEKI--- 188 (329)
T ss_pred HHhCCCcc--------cccccC------------------------------CH---------HHHHHHHHHcCCCC---
Confidence 88322111 000000 00 00000000 00000
Q ss_pred ecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHH-HHHHHHHcCCCCCCCccEEEEeccCC
Q 043787 280 LDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRL-RTFVAHELGLIDNSKHSILWITDFPM 358 (452)
Q Consensus 280 ~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~l-R~~l~~~l~l~~~~~~~flWV~dFPl 358 (452)
+++ .+. ...|..+ ..++...++ .++||+|||.
T Consensus 189 -~~~-----------~~~----------------------------~~~l~~l~~~~ve~~~~-------~p~fi~~yP~ 221 (329)
T cd00775 189 -EKP-----------RTL----------------------------GKLLDKLFEEFVEPTLI-------QPTFIIDHPV 221 (329)
T ss_pred -CCC-----------CCH----------------------------HHHHHHHHHHHhccccC-------CCEEEECCCh
Confidence 000 000 0011111 112223333 5799999997
Q ss_pred CccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHc------CCCHHH--H
Q 043787 359 FEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV------GISPEQ--F 430 (452)
Q Consensus 359 fe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l------g~~~~~--~ 430 (452)
- ..||+|+.++|.. .+.+|||.++|+||.||+.|+||++.|++.|+.. |.+++. .
T Consensus 222 ~------------~~~f~~~~~~~~~-----~~~rfdl~~~G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~ 284 (329)
T cd00775 222 E------------ISPLAKRHRSNPG-----LTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMD 284 (329)
T ss_pred H------------hCcCcCcCCCCCC-----eeEEEEeEECCEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccch
Confidence 3 6789998776654 6899999999999999999999999999999663 676643 3
Q ss_pred hhhhhhhhhhhhcCCCCCCCCC
Q 043787 431 IFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 431 ~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
+| ||+|+++| +|||.
T Consensus 285 ~~----yl~a~~~G---~pp~~ 299 (329)
T cd00775 285 ED----FVTALEYG---MPPTG 299 (329)
T ss_pred HH----HHHHHHCC---CCCCC
Confidence 56 99999999 99994
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=389.51 Aligned_cols=224 Identities=43% Similarity=0.764 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC-ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeee
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA-RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARC 137 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa-~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~ 137 (452)
+++||++++++|+||.+ +||+||+||+|++++++++ ..|.+++. ..|+.+||+||||+|+|+++++|++|||+|+||
T Consensus 1 ~~~rs~i~~~ir~~f~~-~gf~ev~tP~l~~~~~~~~~~~f~~~~~-~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~ 78 (269)
T cd00669 1 FKVRSKIIKAIRDFMDD-RGFLEVETPMLQKITGGAGARPFLVKYN-ALGLDYYLRISPQLFKKRLMVGGLDRVFEINRN 78 (269)
T ss_pred CcHHHHHHHHHHHHHHH-CCCEEEECCEEeccCCccccceEEeeec-CCCCcEEeecCHHHHHHHHHhcCCCcEEEEecc
Confidence 47899999999999998 9999999999998887654 44556543 247888999999999999999999999999999
Q ss_pred eecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC----------CCCCCCceeeHHHHHHHhCCCCC
Q 043787 138 FRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV----------QLPNPFPRLTYAEAMSRYGSDRP 207 (452)
Q Consensus 138 FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~----------~l~~pf~rity~eA~~~~g~dkp 207 (452)
||+|+.+.+|.+||||||+||+|.+++++|+++|+||+++++.+.+. +++.||+||||+||++.|+
T Consensus 79 fR~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~rit~~ea~~~~~---- 154 (269)
T cd00669 79 FRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDFGLPFPRLTYREALERYG---- 154 (269)
T ss_pred eeCCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccccccccCCCceEeeHHHHHHHhC----
Confidence 99995555555999999999999999999999999999999877542 2234555555555554321
Q ss_pred CCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccc
Q 043787 208 DTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEG 287 (452)
Q Consensus 208 d~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 287 (452)
T Consensus 155 -------------------------------------------------------------------------------- 154 (269)
T cd00669 155 -------------------------------------------------------------------------------- 154 (269)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCccccc
Q 043787 288 IPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQR 367 (452)
Q Consensus 288 ~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r 367 (452)
+|+||+|||+.
T Consensus 155 -------------------------------------------------------------~p~fi~d~P~~-------- 165 (269)
T cd00669 155 -------------------------------------------------------------QPLFLTDYPAE-------- 165 (269)
T ss_pred -------------------------------------------------------------CceEEECCCcc--------
Confidence 47999999985
Q ss_pred ccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHH----HHhhhhhhhhhhhhc
Q 043787 368 LEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPE----QFIFAEVVAIPALSS 443 (452)
Q Consensus 368 ~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~----~~~~~f~~~l~a~~~ 443 (452)
.+.||++|..++.. .+.+|||++||+||+|||+|+||++.|++.|+..|++++ ..+| ||+|+++
T Consensus 166 ---~~~fy~~~~~~~~~-----~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~----yl~a~~~ 233 (269)
T cd00669 166 ---MHSPLASPHDVNPE-----IADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEF----YLKALEY 233 (269)
T ss_pred ---cCCCCCCcCCCCCC-----eEEEEEEeeCCEEEeeCchhcCCHHHHHHHHHHhCcChhhccccHHH----HHHHHHc
Confidence 24555667665543 689999999999999999999999999999999999998 6777 9999999
Q ss_pred CCCCCCCCC
Q 043787 444 GDFNCQPQT 452 (452)
Q Consensus 444 G~~~~~p~~ 452 (452)
| ||||.
T Consensus 234 G---~pp~~ 239 (269)
T cd00669 234 G---LPPHG 239 (269)
T ss_pred C---CCCCc
Confidence 9 99994
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-47 Score=380.54 Aligned_cols=267 Identities=21% Similarity=0.332 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC-CC-CCccceeeccc--CCCceeeecCCHHHHHHHHhhcCCCceEEE
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-PE-GARDYLVPSRV--QPGTFYALPQSPQLFKQMLMVSGFDKYYQI 134 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~e-Ga~~~~v~~~~--~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi 134 (452)
|++||.+++++|+||.+ +||+||+||+|+.++ ++ |++.|.+.+.. ..++..||+||||+|+|+++++|++|||||
T Consensus 1 l~~rs~i~~~ir~~f~~-~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 1 LRARARLLAAIRAFFAE-RGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred ChHHHHHHHHHHHHHHH-CCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 57899999999999998 999999999999873 44 45666554321 124567899999999999999999999999
Q ss_pred eeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCccccc
Q 043787 135 ARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQ 214 (452)
Q Consensus 135 ~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~ 214 (452)
|||||||+++++|.|||||||||++|.|++|+|+++|+|++++++. ++.||+||||+||+++|..-.+- +
T Consensus 80 gp~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~-----~~~~~~~it~~ea~~~~~~~~~~-~---- 149 (304)
T TIGR00462 80 CKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD-----PFAPWERLSYQEAFLRYAGIDPL-T---- 149 (304)
T ss_pred cCceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh-----cCCCcEEEEHHHHHHHHhCCCcc-c----
Confidence 9999999997544499999999999999999999999999999975 35799999999999987432110 0
Q ss_pred ccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccccccc
Q 043787 215 LNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSS 294 (452)
Q Consensus 215 ~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~ 294 (452)
.+... ....+++.|.+ + +.+ ..
T Consensus 150 -------------------------------------~~~~~-----~~~~~~~~g~~---~----~~~---------~d 171 (304)
T TIGR00462 150 -------------------------------------ASLDE-----LAAAAAAHGVR---A----SEE---------DD 171 (304)
T ss_pred -------------------------------------CCHHH-----HHHHHHHcCCC---C----CCC---------CC
Confidence 00000 01112222210 0 000 01
Q ss_pred CChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccC
Q 043787 295 LGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHP 374 (452)
Q Consensus 295 l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHP 374 (452)
++... ...||.+ +...++ .-.|+||+|||.- ..|
T Consensus 172 ~~~~~--------------------------e~~l~~~---ie~~~~-----~~~p~fi~~yP~~------------~~~ 205 (304)
T TIGR00462 172 RDDLL--------------------------DLLFSEK---VEPHLG-----FGRPTFLYDYPAS------------QAA 205 (304)
T ss_pred hhHHH--------------------------HHHHHHH---HHHhcC-----CCCCEEEEcCccc------------cCc
Confidence 11111 1111111 122232 1258999999974 578
Q ss_pred cCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHH-------cCCCHHHH-hhhhhhhhhhhhcCCC
Q 043787 375 FTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI-------VGISPEQF-IFAEVVAIPALSSGDF 446 (452)
Q Consensus 375 FT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~-------lg~~~~~~-~~~f~~~l~a~~~G~~ 446 (452)
|+++++++.. .+.+|||.+||+||++|+.|+||++.|++.|+. .|+++..+ +| ||+|++||
T Consensus 206 ~~~~~~~~~~-----~~~rfdl~~~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~----yl~~~~~G-- 274 (304)
T TIGR00462 206 LARISPDDPR-----VAERFELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDER----FLAALEAG-- 274 (304)
T ss_pred CccccCCCCC-----eeEEEEEEECCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHH----HHHHHHcC--
Confidence 9888766643 688999999999999999999999999999976 79998888 46 99999999
Q ss_pred CCCCCC
Q 043787 447 NCQPQT 452 (452)
Q Consensus 447 ~~~p~~ 452 (452)
||||.
T Consensus 275 -~pP~~ 279 (304)
T TIGR00462 275 -LPECS 279 (304)
T ss_pred -CCCCC
Confidence 99994
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=363.64 Aligned_cols=302 Identities=21% Similarity=0.343 Sum_probs=247.1
Q ss_pred CCCceEEEEeEEEEEecCCCC-CCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~-~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
..|+.||.|+-++|++.|... .-..++ .+++.+..|++|||-+|....+.+|+.|+.+++++|++|.+ .|++
T Consensus 191 apgghEl~vdy~Eiig~Apag~~~n~ln------e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~-~~yt 263 (545)
T KOG0555|consen 191 APGGHELNVDYWEIIGLAPAGGFDNPLN------EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFE-RGYT 263 (545)
T ss_pred CCCCceEEeeeeeeecccCCCccccccc------ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHh-cCce
Confidence 468999999999999987421 112222 25778899999999999999999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeec
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~ 159 (452)
||.+|+|+....||+...|.-.+ .|+..||+||+|||++.++. .+++||+|.+.||+|.|+|+|| .|||++|+|++
T Consensus 264 EVtPPtmVQTQVEGGsTLFkldY--yGEeAyLTQSSQLYLEtclp-Algdvy~I~~SyRAEkSrTRRHLsEytHVEaE~a 340 (545)
T KOG0555|consen 264 EVTPPTMVQTQVEGGSTLFKLDY--YGEEAYLTQSSQLYLETCLP-ALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECA 340 (545)
T ss_pred ecCCCceEEEEecCcceEEeecc--cCchhhccchhHHHHHHhhh-hcCceeEecHhhhhhhhhhhhhhhhheeeeeecc
Confidence 99999999999999988775544 47778899999999999865 5899999999999999999999 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCC-----------CC---CCCCceeeHHHHHHHhCCCCCCCcccccccccccccccC
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKDV-----------QL---PNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLES 225 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~~-----------~l---~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~ 225 (452)
|++++++++.+|+|+.+.+..++.. ++ ..||.||.|.|||+.+.+.. ++-
T Consensus 341 fltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLke~~------vk~---------- 404 (545)
T KOG0555|consen 341 FLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKAPKRPFKRMNYSDAIEWLKEHD------VKK---------- 404 (545)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCCCCCchhcCCHHHHHHHHHhcC------CcC----------
Confidence 9999999999999999998877642 22 37999999999999885431 000
Q ss_pred ccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHH
Q 043787 226 PFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLI 305 (452)
Q Consensus 226 ~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~ 305 (452)
++|+. -.+..+|.++.
T Consensus 405 -------------------------------------------------------edg~~---fefGdDI~eAa------ 420 (545)
T KOG0555|consen 405 -------------------------------------------------------EDGTD---FEFGDDIPEAA------ 420 (545)
T ss_pred -------------------------------------------------------ccCcc---cccccchhhHH------
Confidence 01100 00011121111
Q ss_pred HhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCC-CCcc
Q 043787 306 RCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNP-EDMD 384 (452)
Q Consensus 306 ~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~-ed~~ 384 (452)
.+.|.+..| .+++++.||.- |+||+|+.- +|..
T Consensus 421 ---------------------------ER~mtdtIg-------~PIfLtrFpve------------iKsFYM~rc~dd~~ 454 (545)
T KOG0555|consen 421 ---------------------------ERKMTDTIG-------VPIFLTRFPVE------------IKSFYMKRCEDDPR 454 (545)
T ss_pred ---------------------------HHhhhhhcC-------CceEEeecccc------------ccceeeecccCccc
Confidence 124555555 58999999984 999999974 4443
Q ss_pred ChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCC
Q 043787 385 DLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQP 450 (452)
Q Consensus 385 ~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p 450 (452)
.+.|.|++++|+ ||.|||+||.|.+-..+-|+.-||++..+.| |+|.++|| +||+
T Consensus 455 -----lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYW----y~DqrkyG--t~pH 510 (545)
T KOG0555|consen 455 -----LTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYW----YTDQRKYG--TCPH 510 (545)
T ss_pred -----cceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceE----Eeeccccc--cCCC
Confidence 678999999999 9999999999999999999999999999999 99999999 7765
|
|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=354.65 Aligned_cols=270 Identities=25% Similarity=0.385 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCc--cceeeccc---CCCceeeecCCHHHHHHHHhhcCCCc
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR--DYLVPSRV---QPGTFYALPQSPQLFKQMLMVSGFDK 130 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~--~~~v~~~~---~~g~~~~L~qSpQl~kq~Lm~~g~~r 130 (452)
..+|++|+.+++++|+||.+ +||+||+||+|+..+..|+. +|.+.... ..|+..||+||||+++|+++++|++|
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~-~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~r 80 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFAD-RGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGP 80 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHH-CCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccc
Confidence 46899999999999999998 99999999999887766653 33332211 23677789999999999989999999
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCc
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTR 210 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r 210 (452)
||+||||||+|++.++|.+||||||||++|.|++|+|+++|+||++++.. .||++|||+||+++|...++- +
T Consensus 81 vf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~-------~~~~~i~~~eaf~~~~g~~~~-~ 152 (306)
T PRK09350 81 IFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC-------EPAESLSYQQAFLRYLGIDPL-S 152 (306)
T ss_pred eEEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc-------CCceEEEHHHHHHHHhCCCCC-c
Confidence 99999999999995545599999999999999999999999999999852 689999999999988432110 0
Q ss_pred ccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccc
Q 043787 211 FSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPA 290 (452)
Q Consensus 211 ~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 290 (452)
.+...+ .+.+.+.|..... ..+
T Consensus 153 -----------------------------------------~~~~~~-----~~~~~~~g~~~~~-----~~~------- 174 (306)
T PRK09350 153 -----------------------------------------ADKTQL-----REVAAKLGLSNIA-----DEE------- 174 (306)
T ss_pred -----------------------------------------CCHHHH-----HHHHHHcCCCCcC-----CCC-------
Confidence 000000 0111111110000 000
Q ss_pred ccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHH-HHHcCCCCCCCccEEEEeccCCCccCccccccc
Q 043787 291 LVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFV-AHELGLIDNSKHSILWITDFPMFEWNDSEQRLE 369 (452)
Q Consensus 291 ~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l-~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~ 369 (452)
. .. .+.+..|=..+ -..++ .-.|+||+|||.-
T Consensus 175 --~-----~~-------------------------~~~~~~l~~~~ve~~l~-----~~~p~fi~~yP~~---------- 207 (306)
T PRK09350 175 --E-----DR-------------------------DTLLQLLFTFGVEPNIG-----KEKPTFVYHFPAS---------- 207 (306)
T ss_pred --C-----CH-------------------------HHHHHHHHHHHHHHhcC-----CCCCEEEEcCccc----------
Confidence 0 00 01111111111 12233 1148999999973
Q ss_pred ccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHH-------cCCCHHHHhhhhhhhhhhhh
Q 043787 370 ALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI-------VGISPEQFIFAEVVAIPALS 442 (452)
Q Consensus 370 a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~-------lg~~~~~~~~~f~~~l~a~~ 442 (452)
..||+++++++.. .+.+|||.+||+||++|+.|+||++.|++.|+. .|+++..++| .||+|++
T Consensus 208 --~~~~a~~~~~~~~-----~~~rfdl~i~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~---~~l~a~~ 277 (306)
T PRK09350 208 --QAALAKISTEDHR-----VAERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDE---NLIAALE 277 (306)
T ss_pred --cCccccccCCCCC-----eeEEEEEEECCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcH---HHHHHHH
Confidence 4589998776654 689999999999999999999999999999974 8888888854 3899999
Q ss_pred cCCCCCCCCC
Q 043787 443 SGDFNCQPQT 452 (452)
Q Consensus 443 ~G~~~~~p~~ 452 (452)
+| ||||.
T Consensus 278 ~G---~pp~~ 284 (306)
T PRK09350 278 AG---LPDCS 284 (306)
T ss_pred cC---CCCCC
Confidence 99 99994
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=366.09 Aligned_cols=322 Identities=26% Similarity=0.433 Sum_probs=245.9
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+||++.|.|+++++|++|..++|=.. +..++.++|.+.||+||- ++..+..+..||+|+++||+||.+ +||+
T Consensus 128 ~~GelSv~v~~~~lLsKsL~pLPeK~------hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~-~gFl 200 (502)
T COG1190 128 KTGELSVSVEELRLLSKSLRPLPEKF------HGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDD-RGFL 200 (502)
T ss_pred CCCceEEEEEEEeeecccCCCCChhh------cCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCe
Confidence 58999999999999999987777433 335678999999999997 678999999999999999999988 9999
Q ss_pred EEcCceEeecCCC-CCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 81 EIETPVLSRSTPE-GARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
||+||+|...... .|++|..-.+.. +...||+.+|+||++.|+++|++|||+|+|+||||+.+++|+|||||||+|++
T Consensus 201 EVETP~lq~i~GGA~ArPF~ThhNal-d~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~A 279 (502)
T COG1190 201 EVETPMLQPIPGGAAARPFITHHNAL-DMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQA 279 (502)
T ss_pred EeccccccccCCCcccccceeeeccc-CCceEEeeccHHHHHHHHhcCchhheeeccccccCCCccccCcchhhHHHHHH
Confidence 9999999875533 256777654433 34467999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCC-CCCcccccccccccccccCccc
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDR-PDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dk-pd~r~~~~~~~~~~~~~~~~f~ 228 (452)
++|++|+|+++|+|++.++.++.| +++..||+|+++.||++.+.+.. .++ .
T Consensus 280 YaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~------~------------ 341 (502)
T COG1190 280 YADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDDL------F------------ 341 (502)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCcccccc------C------------
Confidence 999999999999999999999986 36789999999999998875431 110 0
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
+..+ +.+.+++.|.+......
T Consensus 342 ------------------------~~e~-----~~~~ak~~~i~~~~~~~------------------------------ 362 (502)
T COG1190 342 ------------------------DDEE-----AKELAKKHGIEVEKYGT------------------------------ 362 (502)
T ss_pred ------------------------CHHH-----HHHHHHHhCCCcCcccc------------------------------
Confidence 0000 11223332222110000
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
..+|+|=.++=+.+ +...-..|.+|+|||.- --|.+.++.++..
T Consensus 363 ------------------~~~g~ll~~lFe~~--vE~~liqPTFv~d~P~e------------iSPLak~~~~~p~---- 406 (502)
T COG1190 363 ------------------WGLGHLLNELFEEL--VEAKLIQPTFVTDHPVE------------ISPLAKRHRSNPG---- 406 (502)
T ss_pred ------------------ccHHHHHHHHHHHH--hhhhhcCCceeecCccc------------cCccccCCCCCcc----
Confidence 01222222222211 22233578999999974 5688888877655
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHHH------cCCCHH-HHhhhhhhhhhhhhcCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI------VGISPE-QFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~------lg~~~~-~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.-++|.+||.||+-|=-=..||..|+.-|+. +|=+++ .+.+ -|++||.|| +||-
T Consensus 407 -~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~De---dfv~ALeyG---mPPT 469 (502)
T COG1190 407 -LTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDE---DFVEALEYG---MPPT 469 (502)
T ss_pred -hhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCH---HHHHHHhcC---CCCC
Confidence 678999999999999999999999999999953 333322 1222 378999999 9993
|
|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=310.66 Aligned_cols=198 Identities=27% Similarity=0.546 Sum_probs=168.4
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++.|.+.++.+|++|..++|-... ...+.|+|.+.||||+- ++..+..|+.|++|+..||.||.+ +||+
T Consensus 173 ~~gELSi~~~~~~lLspcLh~lP~~~~------gLkD~EtRyrqRylDlilN~~~r~~f~~RakII~~iRkfld~-rgFl 245 (560)
T KOG1885|consen 173 KSGELSIIPNEIILLSPCLHMLPHEHF------GLKDKETRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFLDS-RGFL 245 (560)
T ss_pred CCceEEEeecchheecchhccCChhhc------CCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhh-cCce
Confidence 468899999999999999888882221 13467899999999997 778999999999999999999988 9999
Q ss_pred EEcCceEeecCCC-CCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 81 EIETPVLSRSTPE-GARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
|||||++...... -|++|..-.. .-+...||+.+|+||+++|+++|++|||+||+.||||..+.+|+||||.+|+||+
T Consensus 246 EVETPmmn~iaGGA~AkPFIT~hn-dldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~A 324 (560)
T KOG1885|consen 246 EVETPMMNMIAGGATAKPFITHHN-DLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 324 (560)
T ss_pred EecchhhccccCccccCceeeccc-ccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHH
Confidence 9999999875533 2567765443 2345578999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC-----------------CCCCCCCceeeHHHHHHH-hCCCCC
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD-----------------VQLPNPFPRLTYAEAMSR-YGSDRP 207 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~pf~rity~eA~~~-~g~dkp 207 (452)
|+|++|+|+.+|.|++.++..+.| +++..||+|+++-+.+++ +|.+-|
T Consensus 325 Yady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k~lgi~l~ 390 (560)
T KOG1885|consen 325 YADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEKELGIKLP 390 (560)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHHHhCCCCC
Confidence 999999999999999999998865 245688999998888875 454433
|
|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=252.67 Aligned_cols=205 Identities=25% Similarity=0.409 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCc--c----ceeecccCCCceeeecCCHHHHHHHHhhcCCCc
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR--D----YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDK 130 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~--~----~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~r 130 (452)
..|..|++|+.+||.||.+ +||+||+||.|+.++...++ . |+.|... +++..||++||++++|.|+++|-++
T Consensus 14 ~~ll~Ra~i~~~iR~FF~e-rg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~-~~~~l~L~TSPEy~mKrLLAag~~~ 91 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAE-RGVLEVETPALSVAPVTDIHLHPFETEFLGPGGA-KGKPLWLHTSPEYHMKRLLAAGSGP 91 (322)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCceEecchHhhcCCCCccceeeeeeEEeccCcc-ccceeeeecCcHHHHHHHHHccCCc
Confidence 3489999999999999988 99999999999999877665 2 2323322 3567789999999999999999999
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHh-CCCCCCC
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY-GSDRPDT 209 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~-g~dkpd~ 209 (452)
+|||++||||++.+..|||||||||||..+.++.-+|+.+.+|++.++.. .+++++||+||+.+| |.|.+.+
T Consensus 92 ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~-------~~~E~ls~~eaF~r~~gid~l~~ 164 (322)
T COG2269 92 IFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC-------VEAERLSYQEAFLRYLGIDPLSA 164 (322)
T ss_pred chhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHcc-------CCcceeeHHHHHHHHhCCCcccc
Confidence 99999999999988889999999999999999999999999999988863 469999999999998 5554321
Q ss_pred -----c-----cccc---ccccccccccCccccccccccCC----CeEEEEEccCCCcccchhhhccCc-chHHHHHcCC
Q 043787 210 -----R-----FSLQ---LNDVSDIFLESPFRVFSDSLKSG----GIIKVLCVPSGAKTYSNTALKKGD-IYNEAIKSGA 271 (452)
Q Consensus 210 -----r-----~~~~---~~~~~~~~~~~~f~~~~~~i~~~----~~v~~~~~p~~~~~~s~~~~~~~~-~~~~~~~~~~ 271 (452)
+ .++. -.++.+++ -.+|...||++ .++++++||..+.++.+.. .+| ...+..+...
T Consensus 165 ~~~~L~~~~~~~~l~~~~~~~~d~L~----~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~--~~D~rVAERFElY~ 238 (322)
T COG2269 165 DKTELREAAAKLGLSAATDEDWDTLL----QLLFVEGVEPNLGKERPTFLYHFPASQAALAQIS--TGDPRVAERFELYY 238 (322)
T ss_pred cHHHHHHHHHhcCCCCCCccCHHHHH----HHHHHhhcCcccCCCCceEEEeCcHHHHHhhccC--CCCcchhhhhhhee
Confidence 1 1111 12344555 36788888875 6899999998776665522 222 2455666777
Q ss_pred CCccE
Q 043787 272 KGLPF 276 (452)
Q Consensus 272 ~gl~~ 276 (452)
||+..
T Consensus 239 kGiEL 243 (322)
T COG2269 239 KGIEL 243 (322)
T ss_pred eeeee
Confidence 87754
|
|
| >PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=170.21 Aligned_cols=138 Identities=16% Similarity=0.251 Sum_probs=118.4
Q ss_pred ceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCc-----cc-chhhhccCcchH
Q 043787 191 PRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAK-----TY-SNTALKKGDIYN 264 (452)
Q Consensus 191 ~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~-----~~-s~~~~~~~~~~~ 264 (452)
..+||.|||++||+|||| ++.|++++|.+++|++|...+++++.|.+|++|+... .+ +++.++ .+.+
T Consensus 262 ~lltY~EAM~rYGSDKPD-----eivDVTd~f~~t~fkif~~~ik~gg~VkaI~vp~~~~~l~~e~~~srr~~d--~l~e 334 (630)
T PRK04028 262 NLLKIRDELKERGASVED-----EIVDVTELFKDTKSKIIKKALKKGGKVLAIKLPGFKGLLGREIQPGRRLGT--ELAD 334 (630)
T ss_pred HHHHHHHHHHHcCCCCCc-----cceehHHHhccCCchhhhhhhcCCCeEEEEEcCCcccccccccccCHHHHH--HHHH
Confidence 469999999999999999 8999999999999999999888889999999998653 12 566654 3567
Q ss_pred HHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCC
Q 043787 265 EAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLID 344 (452)
Q Consensus 265 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~ 344 (452)
+++.+|++|++|++ + +. ...++++++++|.+++++++||++||++|+...++++||+||+++++.++.+.
T Consensus 335 ~aK~~GakGL~~~~--e---l~-----~~~is~e~l~~L~e~l~ak~GDll~~~a~k~~~v~~~LG~LR~~la~~l~~v~ 404 (630)
T PRK04028 335 YAKAWGVGGIFHTD--E---LP-----AYGITEEEVEALREALGAGENDAFILVADEEEKAEKALEAVIERAKEALEGVP 404 (630)
T ss_pred HHHHcCCCceEEec--c---cc-----cCCCCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88999999999987 2 21 12347888999999999999999999999999999999999999999998664
Q ss_pred C
Q 043787 345 N 345 (452)
Q Consensus 345 ~ 345 (452)
.
T Consensus 405 ~ 405 (630)
T PRK04028 405 E 405 (630)
T ss_pred c
Confidence 4
|
|
| >PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-15 Score=126.86 Aligned_cols=95 Identities=39% Similarity=0.608 Sum_probs=81.7
Q ss_pred ccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCC
Q 043787 230 FSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSA 309 (452)
Q Consensus 230 ~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~ 309 (452)
|.+.++.++.|+++++|..++.+||++++. +.++|+++|++||+|+++.+ +.+ .||+.|+|++++.++|.+++++
T Consensus 1 F~~~l~~~g~Vkai~vp~~~~~~srk~id~--l~~~ak~~ga~gL~~ikv~~-~~~--~s~i~kfl~e~~~~~l~~~~~a 75 (95)
T PF02938_consen 1 FSNALKKGGSVKAIVVPGGAAKLSRKQIDK--LEEFAKKFGAKGLAWIKVEE-GEL--KSPIAKFLSEEELKALIERLGA 75 (95)
T ss_dssp HHHHHHTTSEEEEEEETTG-TTTTHCCCCC--CCCHHHHCCHCHCCCEEEST-CEE--ECTTCCCCHHHHHHHHHHHTT-
T ss_pred CchHHhCCCEEEEEEeCCccccCCHHHHHH--HHHHHHHhCCCCceeeeEcC-Ccc--cCcccccCCHHHHHHHHHHhCC
Confidence 345567789999999999777899999875 56899999999999999976 434 6999999999999999999999
Q ss_pred CCCcEEEEEcCCchhHHHHH
Q 043787 310 GPSDLILFAVGHPASVNKTL 329 (452)
Q Consensus 310 ~~gd~~~~~a~~~~~~~~~L 329 (452)
++||+|||+||++..++++|
T Consensus 76 ~~GD~ll~~Ag~~~~v~~~L 95 (95)
T PF02938_consen 76 KPGDLLLFVAGKKEIVNKAL 95 (95)
T ss_dssp -TTEEEEEEEESHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHhhC
Confidence 99999999999999999886
|
The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D. |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=124.26 Aligned_cols=133 Identities=19% Similarity=0.321 Sum_probs=96.1
Q ss_pred CCHhhhhccceeeecchHHHHHHHH-----HHHHHHHHHHHHhhcCCeEEEcCceEeecCC------CCCccceeecccC
Q 043787 37 VKEEIRLRYRCLDLRRQQMNHNILL-----RHKVVKLIRRYLEDVHGFVEIETPVLSRSTP------EGARDYLVPSRVQ 105 (452)
Q Consensus 37 ~~~~~rl~~r~LdlR~~~~~~~l~~-----Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~------eGa~~~~v~~~~~ 105 (452)
...|+|+.+| |++.+++++.. .+.+.+++|++|.. .||.||.||+|++... .+..++..+...
T Consensus 180 ~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~-~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~- 253 (417)
T PRK09537 180 KELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVD-RGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR- 253 (417)
T ss_pred hhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHH-CCCEEEECCeeecHHHHHHhCCCCcccchhhhee-
Confidence 4578888888 99999999999 99999999999999 9999999999975421 111111111100
Q ss_pred CCceeeec--CCHHHHHHHHh----hcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHH
Q 043787 106 PGTFYALP--QSPQLFKQMLM----VSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIR 175 (452)
Q Consensus 106 ~g~~~~L~--qSpQl~kq~Lm----~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~ 175 (452)
-+...+|+ ..|+++..+.. ....-|+|+||+|||+|..+..|.+||+|++++..+. ++.+++.+++++++
T Consensus 254 ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~ 331 (417)
T PRK09537 254 VDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLK 331 (417)
T ss_pred eCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHH
Confidence 12345687 56898876421 1123589999999999988777779999999999875 46666655555554
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-10 Score=105.89 Aligned_cols=112 Identities=31% Similarity=0.415 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc----cceeecccCCCceeeecCCHHHHHHHHhhc----CCCceE
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR----DYLVPSRVQPGTFYALPQSPQLFKQMLMVS----GFDKYY 132 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~----~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~----g~~rvf 132 (452)
|+.+.+.+|++|.. .||.||.||.++..+. +... ....... ..+..++|++|....+...++. ..-|+|
T Consensus 2 ~~~~~~~~r~~l~~-~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lf 79 (211)
T cd00768 2 RSKIEQKLRRFMAE-LGFQEVETPIVEREPLLEKAGHEPKDLLPVGA-ENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLA 79 (211)
T ss_pred HHHHHHHHHHHHHH-cCCEEeEcceecHHHHHHHcCccHhheeeeec-CCCCEEEECCCCcHHHHHHHHhhcccCCEEEE
Confidence 67899999999988 9999999999987632 1111 1111111 2356678999988888765543 456999
Q ss_pred EEeeeeecCCCCC--CCCcceeeeeeeecCCC------HHHHHHHHHHHHH
Q 043787 133 QIARCFRDEDLRA--DRQPEFTQLDMELAFTP------LDDMLRLNEDLIR 175 (452)
Q Consensus 133 qi~~~FR~E~~~~--~r~~EFtqLe~e~~f~~------~~dlm~~~E~li~ 175 (452)
+||+|||.|.... .|..||+|+++++.+.+ ..+++..++++++
T Consensus 80 eig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~ 130 (211)
T cd00768 80 EIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR 130 (211)
T ss_pred EEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999997654 45589999999999964 3566666666664
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.4e-09 Score=112.71 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=104.5
Q ss_pred eeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhcc-----CcchHHH
Q 043787 192 RLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKK-----GDIYNEA 266 (452)
Q Consensus 192 rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~-----~~~~~~~ 266 (452)
-+.|.|+|.+.|.+. ++++.|++++|.+++|++|.+.+ .|+++++|+.. .+++++++. ..+.+++
T Consensus 260 ll~~~~~l~~~g~~v-----~~eI~DVTdlF~~t~fkvf~~~l----~VkaI~vpg~~-~lsrkei~pgrr~gdeL~e~a 329 (620)
T TIGR00134 260 LLKIRDELQERGAVV-----EEKIFDVTEVFADTKSKIISNAE----SVKAVLLRGFD-GLVGVEIQPGRRLGTEFADYA 329 (620)
T ss_pred HHHhhhhHhhcCCcc-----ccccccccHhhccCCchhccccc----eEEEEEcCCCc-ccchhhhcccccchHHHHHHH
Confidence 477889998888743 45889999999999999998754 79999999864 489988843 1355688
Q ss_pred HHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHH
Q 043787 267 IKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHE 339 (452)
Q Consensus 267 ~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~ 339 (452)
+.+|++||+|+ + + +. ...+++++.++|.+.+++++||+++|+||+...++++||+|....-+.
T Consensus 330 K~~GakGL~~~---d-e-lp-----~~~it~eev~~L~e~l~ak~GD~ll~vAdk~~~v~~aL~~v~~R~ke~ 392 (620)
T TIGR00134 330 KKRGVGGIFHT---D-E-LP-----AYGITEEEVRGLRDAVGAEQGDAVVMVAHERVTVERALREVIERAKMA 392 (620)
T ss_pred HHcCCCceEee---c-c-cc-----cCCCCHHHHHHHHHHhCCCCCCEEEEEcCcHHHHHHHHHHHHhhhhhh
Confidence 89999999997 2 2 21 123788999999999999999999999999999999999997766554
|
The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA. |
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-08 Score=102.21 Aligned_cols=114 Identities=19% Similarity=0.332 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC------CCCccceeecccCCCceeeec--CCHHHHHHHHhh----cC
Q 043787 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP------EGARDYLVPSRVQPGTFYALP--QSPQLFKQMLMV----SG 127 (452)
Q Consensus 60 ~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~------eGa~~~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~----~g 127 (452)
--.+.+.+.+|++|.. .||.||.||+|++... ++..+...+... -++..+|+ ..|+++..+... ..
T Consensus 240 ~~~~~Led~IRevfvg-~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk-~ee~lvLRPdLTPsLaR~La~N~~~l~~ 317 (453)
T TIGR02367 240 DYLGKLERDITKFFVD-RGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR-VDKNFCLRPMLAPNLYNYLRKLDRALPD 317 (453)
T ss_pred cHHHHHHHHHHHHHHH-CCCEEEECCeecchHHHHhhcCccCCcccccceE-ecCceEecccCHHHHHHHHHHhhhhccC
Confidence 3458899999999998 9999999999973210 111111111100 12345787 779998755321 22
Q ss_pred CCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHH
Q 043787 128 FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIR 175 (452)
Q Consensus 128 ~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~ 175 (452)
-.|+|+||+|||+|..+..|..||+|++++.++. ++.|+..++.++++
T Consensus 318 PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr 367 (453)
T TIGR02367 318 PIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLD 367 (453)
T ss_pred CeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4599999999999998888889999999999885 67777755444443
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=87.43 Aligned_cols=115 Identities=29% Similarity=0.375 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHh-hcCCeEEEcCceEeecCC-C--CC-----ccceeecccCCCceeeecCCH-HHHHHHHh---hc-
Q 043787 61 LRHKVVKLIRRYLE-DVHGFVEIETPVLSRSTP-E--GA-----RDYLVPSRVQPGTFYALPQSP-QLFKQMLM---VS- 126 (452)
Q Consensus 61 ~Rs~i~~~iR~ff~-~~~gF~EV~TPiL~~~~~-e--Ga-----~~~~v~~~~~~g~~~~L~qSp-Ql~kq~Lm---~~- 126 (452)
++++|.+.+++.+. + .||.||.||+|.+... + |- ...+.... ..++.|+|.-+. +.+-.++. .+
T Consensus 1 l~~~l~~~~~~~~~~~-~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~-~~~~~~~L~pt~~~~~~~~~~~~~~~~ 78 (173)
T PF00587_consen 1 LRNALERFIREEFVLK-FGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKD-RGDEEYCLRPTSEPGIYSLFKNEIRSS 78 (173)
T ss_dssp HHHHHHHHHHHHHHHH-TTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEE-TTTEEEEE-SSSHHHHHHHHHHHEEBH
T ss_pred CHHHHHHHHHHHhHHh-cCCEEEECCeEEehHHhhhccccccccCCeeeeee-cccccEEeccccccceeeeecceeeec
Confidence 57889999999998 7 9999999999998752 1 11 12222211 123557885443 22222211 11
Q ss_pred ---CCCceEEEeeeeecCC---CCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 127 ---GFDKYYQIARCFRDED---LRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 ---g~~rvfqi~~~FR~E~---~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
---|+||+|+|||+|. .+-.|--||+|.|++....+ ++..+..+.++..+.
T Consensus 79 ~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~ 135 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYK 135 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred cccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHH
Confidence 1248999999999993 33457789999999887777 777777777765443
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=95.40 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCc--cceeecccCCCcee-----ee--cCCHHHHHHHHhhcCCCceE
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GAR--DYLVPSRVQPGTFY-----AL--PQSPQLFKQMLMVSGFDKYY 132 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~--~~~v~~~~~~g~~~-----~L--~qSpQl~kq~Lm~~g~~rvf 132 (452)
+.+...||++|.. .||.|+++|.|++..-. ++- +--+|+|.....+| .| ++||-+..-+.-...--|+|
T Consensus 111 ~~~~~~Ir~if~~-mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~L~~~~~Pirif 189 (339)
T PRK00488 111 TQTIEEIEDIFVG-MGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRTMEKQKPPIRII 189 (339)
T ss_pred HHHHHHHHHHHHh-CCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHHHHhcCCCeEEE
Confidence 6788999999998 99999999999753211 111 11234443333333 23 57887766553222235899
Q ss_pred EEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHHH
Q 043787 133 QIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 133 qi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~~ 179 (452)
++|+|||.+..+++|.|+|+|+|.-++. +++.++...++.+++.+|.
T Consensus 190 ~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 190 APGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred EeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999997777 5899999999999998885
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.4e-07 Score=89.11 Aligned_cols=115 Identities=24% Similarity=0.450 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC--------CCC--Ccc----ceeecccCC--Cceeee--cCCHHHHHHH-H
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST--------PEG--ARD----YLVPSRVQP--GTFYAL--PQSPQLFKQM-L 123 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~--------~eG--a~~----~~v~~~~~~--g~~~~L--~qSpQl~kq~-L 123 (452)
+++.+.+|++|.. .||.||.+|.+.+.. |.. ||+ |.+... .. .....| ++||.+..-+ .
T Consensus 20 ~~~~~~i~~~~~~-~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p-~~~~~~~~vLRThts~~~~~~l~~ 97 (247)
T PF01409_consen 20 TKFIREIRDIFVG-MGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNP-YSAEEDYSVLRTHTSPGQLRTLNK 97 (247)
T ss_dssp HHHHHHHHHHHHC-TTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSS-SBCECSSEEE-SSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-CCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeecc-ccccchhhhhhhhhhHHHHHHHHH
Confidence 5677889999988 999999999996532 211 222 111000 00 122235 3567666544 1
Q ss_pred hhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHHHHH
Q 043787 124 MVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 124 m~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~i~~ 179 (452)
-...--|+|+||+|||.|..+++|.|+|+|+|.-.+.- ++.+++..++.+++++|.
T Consensus 98 ~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG 155 (247)
T PF01409_consen 98 HRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFG 155 (247)
T ss_dssp TSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHT
T ss_pred hcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhh
Confidence 12345799999999999999999999999999988774 899999999999998874
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=83.64 Aligned_cols=112 Identities=19% Similarity=0.307 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCcccee---------eccc-CCCceeeecCC--HHHHHHHHhhcCCCc
Q 043787 64 KVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GARDYLV---------PSRV-QPGTFYALPQS--PQLFKQMLMVSGFDK 130 (452)
Q Consensus 64 ~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~~~~v---------~~~~-~~g~~~~L~qS--pQl~kq~Lm~~g~~r 130 (452)
++.+.+|++|.. .||.||.|+.+++...+ ..-.+.. +... +|- .-+|++| |.+.+.+.-...--|
T Consensus 5 ~~~~~ir~~L~~-~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~~l~~N~~~~~ 82 (218)
T cd00496 5 KVIEEIEDIFVS-MGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQARALAKLKPPIR 82 (218)
T ss_pred HHHHHHHHHHHH-CCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHHHHHhcCCCee
Confidence 456778999988 99999999999876211 1100000 0011 111 2356655 888765432125679
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRKI 177 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~i 177 (452)
+|+||+|||.+..+..|.|||+||++.+++. ++.+++..+|+++..+
T Consensus 83 lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 83 IFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred EEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999999999875545568999999999997 8999999999998643
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-07 Score=90.63 Aligned_cols=116 Identities=23% Similarity=0.330 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCc--cceeecccCCCcee--------ee--cCCHHHHHHHHhhcC-C
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GAR--DYLVPSRVQPGTFY--------AL--PQSPQLFKQMLMVSG-F 128 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~--~~~v~~~~~~g~~~--------~L--~qSpQl~kq~Lm~~g-~ 128 (452)
..++..++++|.. .||.+++.|.+.+.--. .|- +-.+|+|...+.|| -| ++||-+-..+.--.. -
T Consensus 114 ~~~~e~i~~iF~~-mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P 192 (335)
T COG0016 114 TQTIEEIEDIFLG-MGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIP 192 (335)
T ss_pred HHHHHHHHHHHHH-cCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCC
Confidence 5678889999988 99999999977543211 222 22245554444544 12 467766665542222 6
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~~ 179 (452)
-|+|++|+|||.|..+++|.|||.|+|.-... +++.+|+.+++++++.++.
T Consensus 193 ~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg 245 (335)
T COG0016 193 IKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFG 245 (335)
T ss_pred ceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999965554 5899999999999998884
|
|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-06 Score=84.35 Aligned_cols=100 Identities=25% Similarity=0.318 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---C----Ccc-ceeecccCCCceeeec--CCHHHHHHHHhh---
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---G----ARD-YLVPSRVQPGTFYALP--QSPQLFKQMLMV--- 125 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---G----a~~-~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~--- 125 (452)
.+.|..+.+.+++.|.+ +||.||.||+|...+.- + ..+ |.+.+. .|+.++|+ ..|++..-....
T Consensus 2 ~~~~~~l~~~l~~~f~~-~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~--~g~~l~LRpd~T~~iaR~~a~~~~~ 78 (261)
T cd00773 2 AALRRYIEDTLREVFER-YGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDK--GGRDLALRPDLTAPVARAVAENLLS 78 (261)
T ss_pred hHHHHHHHHHHHHHHHH-cCCEEeeccceeeHHHhcccccccccceEEEEECC--CCCEEEeCCCCcHHHHHHHHhcCcc
Confidence 36788999999999988 99999999999886421 1 112 222222 46778885 345555433211
Q ss_pred -cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 126 -SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 126 -~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
...-|+|++++|||.|.....|..||+|+++|+...
T Consensus 79 ~~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~ 115 (261)
T cd00773 79 LPLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGS 115 (261)
T ss_pred CCCCeEEEEEcCEEecCCCCCCCccceEEeceeeeCC
Confidence 134599999999999998877778999999999887
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=83.18 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCC-Cc----cce-eeccc--CCCceeeecC--CHHHHH---HHH
Q 043787 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEG-AR----DYL-VPSRV--QPGTFYALPQ--SPQLFK---QML 123 (452)
Q Consensus 60 ~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eG-a~----~~~-v~~~~--~~g~~~~L~q--SpQl~k---q~L 123 (452)
+++.+|.+.+++.|.. .||.||.||.|...+ ..| .. +.+ +.... ..+..++|+- .+.++. +..
T Consensus 3 ~~~~~l~~~~~~~~~~-~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 3 ALWRALERFLDDRMAE-YGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 5788999999999988 999999999998765 222 11 111 11110 0046677742 233332 211
Q ss_pred hh--cCCCceEEEeeeeecCCCC---CCCCcceeeeeeeecCCC
Q 043787 124 MV--SGFDKYYQIARCFRDEDLR---ADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 124 m~--~g~~rvfqi~~~FR~E~~~---~~r~~EFtqLe~e~~f~~ 162 (452)
.. ..--|+|++++|||+|.+. -.|..||+|.|+|..+.+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 11 1234899999999999876 457789999999988765
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=93.06 Aligned_cols=49 Identities=31% Similarity=0.501 Sum_probs=41.5
Q ss_pred CCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHH
Q 043787 128 FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRK 176 (452)
Q Consensus 128 ~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~ 176 (452)
-.|+|+|++|||+|..+++|.|||+|+|..+... +..+++.++.++++.
T Consensus 357 P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~ 407 (494)
T PTZ00326 357 PKKYFSIDRVFRNETLDATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRR 407 (494)
T ss_pred CceEEecCCEecCCCCCCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999885 567777766665544
|
|
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.9e-06 Score=81.92 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCc------c-ceeecccCCC----ceeeec-CCH----HHH
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGAR------D-YLVPSRVQPG----TFYALP-QSP----QLF 119 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~------~-~~v~~~~~~g----~~~~L~-qSp----Ql~ 119 (452)
.+++.+|.+.+++-+.+ .||.||.||.|....- .|.. + |.+..+ .+ ..++|. +|- .++
T Consensus 32 ~~i~~~I~~~i~~~~~~-~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~--~~~~~~~~l~LrPt~e~~~~~~~ 108 (264)
T cd00772 32 KAILDKIENVLDKMFKE-HGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDA--GDEELEEDFALRPTLEENIGEIA 108 (264)
T ss_pred HHHHHHHHHHHHHHHHH-cCCeEEECCeeccHHHHhhcCCcccccCccceEEEeC--CCCccCceEEECCCCCHHHHHHH
Confidence 57889999999999988 9999999999987542 1211 2 222222 22 567774 332 222
Q ss_pred HHHHhh-cC-CCceEEEeeeeecCCCC-CC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 120 KQMLMV-SG-FDKYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 120 kq~Lm~-~g-~~rvfqi~~~FR~E~~~-~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
...+.. .. --|+||+++|||+|... .. |..||+|.|.+..+++.++..+.++.++.
T Consensus 109 ~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~ 169 (264)
T cd00772 109 AKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLS 169 (264)
T ss_pred HhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHH
Confidence 222211 11 24999999999999533 33 77899999998877899998888888874
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-06 Score=84.34 Aligned_cols=115 Identities=24% Similarity=0.292 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C-CC-----ccce-eecccCCCceeeecCCH-----HHHHHHH
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E-GA-----RDYL-VPSRVQPGTFYALPQSP-----QLFKQML 123 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e-Ga-----~~~~-v~~~~~~g~~~~L~qSp-----Ql~kq~L 123 (452)
-.+++.+|.+.+++.+.. .||.||.||+|...+- . |- .+.+ +..+ .++.++|.... .++...+
T Consensus 30 g~~l~~~i~~~~~~~~~~-~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~--~~~~l~LrPt~e~~~t~~~~~~i 106 (255)
T cd00779 30 GLRVLKKIENIIREEMNK-IGAQEILMPILQPAELWKESGRWDAYGPELLRLKDR--HGKEFLLGPTHEEVITDLVANEI 106 (255)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHHhcCCccccCcccEEEecC--CCCeEEEecCCcHHHHHHHHhcc
Confidence 367899999999999987 9999999999977421 1 21 1222 2222 34567785431 2222221
Q ss_pred hh-cC-CCceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 124 MV-SG-FDKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 124 m~-~g-~~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
.. .. --|+||+++|||+| ..+.. |..||+|.|++..+.+.++..+..+.++.
T Consensus 107 ~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~ 163 (255)
T cd00779 107 KSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQ 163 (255)
T ss_pred ccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHH
Confidence 11 11 23899999999999 55555 88999999999988877777776666554
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.31 E-value=5e-06 Score=86.68 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CC------ccce-eecccCCCceeeec--CCHHHHHHH
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GA------RDYL-VPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga------~~~~-v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
..-.+.+..+...+++.|.+ +||.||.||+|...+- . |. .+.+ ... ..|+.+.|+ ..|++....
T Consensus 11 p~~~~~~~~i~~~i~~~f~~-~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d--~~g~~l~LRpD~T~~iaR~~ 87 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFEL-YGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKD--KGGRSLTLRPEGTAPVARAV 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCeEecCcccchHHHhhhccCccccccccceEEEEC--CCCCEEeecCCCcHHHHHHH
Confidence 44578899999999999998 9999999999966531 1 11 1122 111 247777785 456666543
Q ss_pred Hhh----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 123 LMV----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 123 Lm~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
... ...-|+|++++|||.|..+..|.-||+|+++|..+.+
T Consensus 88 ~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 88 IENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred HhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCC
Confidence 211 1135999999999999888888899999999998864
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.3e-06 Score=87.12 Aligned_cols=114 Identities=20% Similarity=0.328 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhcC---CeEEEc--CceEeecCCCCCccc--eeecccCCCcee-----ee--cCCHHHHHHHHhhcCC
Q 043787 63 HKVVKLIRRYLEDVH---GFVEIE--TPVLSRSTPEGARDY--LVPSRVQPGTFY-----AL--PQSPQLFKQMLMVSGF 128 (452)
Q Consensus 63 s~i~~~iR~ff~~~~---gF~EV~--TPiL~~~~~eGa~~~--~v~~~~~~g~~~-----~L--~qSpQl~kq~Lm~~g~ 128 (452)
+.+...|+++|.. . ||.+++ .|+.+...+=++--+ -+|+|.....+| -| ++|+-+..-+ ..+-
T Consensus 71 ~~~~~~i~~~f~~-~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l--~~~~ 147 (402)
T PLN02788 71 GILKNAIYDYFDE-NYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELL--RAGH 147 (402)
T ss_pred HHHHHHHHHHHhh-cccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHH--HhCC
Confidence 4456677788876 6 999999 565443222122211 246665444444 12 5777555433 4566
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecC--------------CCHHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAF--------------TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--------------~~~~dlm~~~E~li~~i~~ 179 (452)
.|++.+|+|||.|..+++|.|+|.|+|.-+.+ ++..++...+|.+++.+|.
T Consensus 148 ~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg 212 (402)
T PLN02788 148 THFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFG 212 (402)
T ss_pred CcEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999998886 5678899999999987764
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.9e-07 Score=78.56 Aligned_cols=48 Identities=48% Similarity=0.722 Sum_probs=41.3
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchH
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQ 54 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~ 54 (452)
++|++||.+++++|||+| .++|+..++.. ..++++|++|||||||++.
T Consensus 87 ~~~~~El~~~~i~vl~~~-~~lP~~~~~~~----~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 87 PTGEIEVVASELEVLNKA-KTLPFEIDDDV----NVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred CCCcEEEEEeEEEEEECC-CCCCCcccccc----CCCHHHhhhcceeecCCCC
Confidence 468899999999999999 68999886432 4689999999999999975
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.7e-06 Score=85.65 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCC----ccceeecccCCCceeeec--CCHHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGA----RDYLVPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa----~~~~v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
+..-.+.+..+...+|+.|.+ .||.||.||++...+ .+.. .+.+.... ..|+.++|+ ..|+.....
T Consensus 14 ~p~~~~~~~~i~~~i~~~~~~-~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d-~~g~~l~LRpd~T~~~ar~~ 91 (412)
T PRK00037 14 LPEESAKWQYVEDTIREVFER-YGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQD-KGGRSLTLRPEGTAPVVRAV 91 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCeEeeccccchHHHhccccCcccccccceeEEEEc-CCCCEEEecCCCcHHHHHHH
Confidence 344568888999999999988 999999999996543 1111 22221111 247778885 356666544
Q ss_pred Hhhc-CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 123 LMVS-GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 123 Lm~~-g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
.-.. ..-|+|++++|||+|..+..|.-||+|+++|....+
T Consensus 92 ~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 92 IEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred HhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCC
Confidence 2111 346999999999999888888889999999988764
|
|
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.3e-06 Score=82.14 Aligned_cols=117 Identities=22% Similarity=0.313 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEcCceEeecC-CCCCc--cceeecccCCCcee-----ee--cCCHHHHHHHHhhc-CCC
Q 043787 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRST-PEGAR--DYLVPSRVQPGTFY-----AL--PQSPQLFKQMLMVS-GFD 129 (452)
Q Consensus 61 ~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~eGa~--~~~v~~~~~~g~~~-----~L--~qSpQl~kq~Lm~~-g~~ 129 (452)
...++.+.+|++|.. .||.|+.||.+++.. .-.+- +--+|.+.....++ .| +.+|-+-.-+.-.. .--
T Consensus 73 p~~~~~~~ir~~l~~-~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~~~pi 151 (294)
T TIGR00468 73 PLTRVIDEIRDIFLG-LGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENEKPPI 151 (294)
T ss_pred HHHHHHHHHHHHHHH-CCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHHHHHHHHhcCCCCc
Confidence 346777889999988 999999999998652 11111 00122221111111 24 35576555442222 336
Q ss_pred ceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~ 178 (452)
|+|+||+|||.+..++.|.|||+||+.-+.. +++.++...+|.++..+.
T Consensus 152 rlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~ 202 (294)
T TIGR00468 152 RIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMF 202 (294)
T ss_pred eEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999987666677899999998765 489999999999987554
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.6e-06 Score=87.92 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=43.8
Q ss_pred CCceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 128 FDKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 128 ~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
--|+|+|++|||+|..+++|.|||.|+|.-.+. +++.+++.+++.+++.+
T Consensus 342 p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 342 PKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRL 393 (492)
T ss_pred CcEEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 459999999999999999999999999987775 58999998888877653
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-06 Score=83.40 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCc------cce-eecccCC--CceeeecCCH-----HHHH
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGAR------DYL-VPSRVQP--GTFYALPQSP-----QLFK 120 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~------~~~-v~~~~~~--g~~~~L~qSp-----Ql~k 120 (452)
-.+++.+|.+.+++.+.. .||.||.||.|.+.+- ++++ +.+ +..+... +..++|.-.. .+++
T Consensus 31 g~~l~~~l~~~~~~~~~~-~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~ 109 (261)
T cd00778 31 GYAIWENIQKILDKEIKE-TGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFS 109 (261)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHH
Confidence 368889999999999988 9999999999987642 2221 222 2221100 1357775432 2222
Q ss_pred HHHhhcC---CCceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 121 QMLMVSG---FDKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 121 q~Lm~~g---~~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
... .+- --|+||+++|||+|...+ -|-.||+|.|++..+++.++..+.+++++.
T Consensus 110 ~~i-~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~ 169 (261)
T cd00778 110 KWI-RSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILD 169 (261)
T ss_pred hhc-cchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHH
Confidence 221 111 348999999999998764 366899999999999999998888888764
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=87.63 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--CCC------ccce-eecccCCCceeeecC-CHH----HHHH
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--EGA------RDYL-VPSRVQPGTFYALPQ-SPQ----LFKQ 121 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--eGa------~~~~-v~~~~~~g~~~~L~q-SpQ----l~kq 121 (452)
-.-.+++.+|.+.+|+.|.+ .||.||.||+|.+..- +++ .+.+ +..+ .++.++|.- +-. ++..
T Consensus 44 P~g~~~~~~i~~~i~~~~~~-~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~--~~~~l~LrPt~e~~~~~~~~~ 120 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNK-IGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDR--HGRDFVLGPTHEEVITDLVRN 120 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEECcccCcHHHHhhcCCccccchhceEEecC--CCCEEEECCCChHHHHHHHHh
Confidence 34578899999999999988 9999999999986531 111 2333 2222 356677853 322 2233
Q ss_pred HHhhc-C-CCceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHH---HHHHHH
Q 043787 122 MLMVS-G-FDKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLI---RKIFLE 180 (452)
Q Consensus 122 ~Lm~~-g-~~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li---~~i~~~ 180 (452)
.+... . --|+|||++|||+| ..+.. |-.||+|.|.|....+.++.....+.++ ..+++.
T Consensus 121 ~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~ 187 (565)
T PRK09194 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDR 187 (565)
T ss_pred hhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 24999999999999 65555 8899999999998887777666555555 666654
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=80.84 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---CC-----ccceeecccCCCceeee-cCCHHHHHHHHh---hc
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---GA-----RDYLVPSRVQPGTFYAL-PQSPQLFKQMLM---VS 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---Ga-----~~~~v~~~~~~g~~~~L-~qSpQl~kq~Lm---~~ 126 (452)
.+++..|.+.+++.+.. .||.||.||+|...+-- |- .+.+... ..++.++| ++|-..+..+.. .+
T Consensus 30 ~~l~~~l~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~l~LRP~~~~~~~~~~~~~~~s 106 (298)
T cd00771 30 AIIRNELEDFLRELQRK-RGYQEVETPIIYNKELWETSGHWDHYRENMFPFE--EEDEEYGLKPMNCPGHCLIFKSKPRS 106 (298)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEECCeecCHHHHhhCCCccccccCceEec--cCCceEEEcccCCHHHHHHHHhhccc
Confidence 67889999999999988 99999999999776411 21 1222221 13456777 344322222211 11
Q ss_pred --C-CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHH
Q 043787 127 --G-FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLI 174 (452)
Q Consensus 127 --g-~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li 174 (452)
. --|+|++++|||.|.+.. .|..||+|.|++.... .++..+.+++++
T Consensus 107 ~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~-~e~~~~e~~e~l 160 (298)
T cd00771 107 YRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCT-PDQIKEEIKGVL 160 (298)
T ss_pred hhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeC-CcchHHHHHHHH
Confidence 1 239999999999997753 4778999999998743 344444433444
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-05 Score=85.81 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--CCC------ccce-eecccCCCceeeecCC-H----HHHHH
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--EGA------RDYL-VPSRVQPGTFYALPQS-P----QLFKQ 121 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--eGa------~~~~-v~~~~~~g~~~~L~qS-p----Ql~kq 121 (452)
-.-.+++.+|.+.+|+.|.. .||.||.||+|.+..- +++ .+.+ +..+ .++.++|.-. - .++.+
T Consensus 44 P~g~rv~~~I~~~i~~~~~~-~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr--~~~~l~LrPT~Ee~~t~~~~~ 120 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEMNK-DGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDR--KGREFVLGPTHEEVITDLARN 120 (568)
T ss_pred ChHHHHHHHHHHHHHHHHHH-cCCEEEECCccchHHHHhhcCCCCccchhcEEEecC--CCCEEEEcCCCcHHHHHHHHH
Confidence 34578899999999999988 9999999999988531 111 1333 2233 3566788532 1 22232
Q ss_pred HHhhc-CC-CceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHH---HHHHHHh
Q 043787 122 MLMVS-GF-DKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLI---RKIFLEI 181 (452)
Q Consensus 122 ~Lm~~-g~-~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li---~~i~~~~ 181 (452)
.+... .+ -|+|||++|||+| ..+.. |..||+|.|.|....+.++.....+.|+ ..+|+.+
T Consensus 121 ~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred HHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 22111 12 4999999999999 65555 8899999999999888777776777554 6677554
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=84.74 Aligned_cols=122 Identities=22% Similarity=0.390 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC--------CC--CCcc----ceeec------------cc---C
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST--------PE--GARD----YLVPS------------RV---Q 105 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--------~e--Ga~~----~~v~~------------~~---~ 105 (452)
+..-+..+..+.+.+|+.|.. .||.||+||++.++- |. .||+ |++.. ++ +
T Consensus 228 ~~~~~~~~~~~~~~~~~~f~~-~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~h 306 (489)
T PRK04172 228 YPGKKHPYREFIDEVRDILVE-MGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVH 306 (489)
T ss_pred CCCCCChHHHHHHHHHHHHHH-CCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHH
Confidence 334466788999999999988 999999999997540 11 1221 11110 00 0
Q ss_pred --------CC----------ceeeec--CCHHHHHHHHh-hcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--C
Q 043787 106 --------PG----------TFYALP--QSPQLFKQMLM-VSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--P 162 (452)
Q Consensus 106 --------~g----------~~~~L~--qSpQl~kq~Lm-~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~ 162 (452)
.| +...|+ .+|.+..-+.- ...--|+|+||+|||+|..+..|.+||+|+++.+++. +
T Consensus 307 e~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~ 386 (489)
T PRK04172 307 EHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVS 386 (489)
T ss_pred hccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCC
Confidence 01 111343 33433332211 1223599999999999988877889999999999995 7
Q ss_pred HHHHHHHHHHHHHHH
Q 043787 163 LDDMLRLNEDLIRKI 177 (452)
Q Consensus 163 ~~dlm~~~E~li~~i 177 (452)
+.+++.++++++..+
T Consensus 387 f~elkg~l~~ll~~l 401 (489)
T PRK04172 387 FRDLLGILKEFYKRL 401 (489)
T ss_pred HHHHHHHHHHHHHHh
Confidence 778888888877643
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=87.54 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCCc-----cceeecccCCCceeeec-CCHHHHHHHHhhcC-
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGAR-----DYLVPSRVQPGTFYALP-QSPQLFKQMLMVSG- 127 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa~-----~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~~g- 127 (452)
-.+++..|.+.+++.+.. .||.||.||+|.... ..|-- +.+...+ .++.|+|. ++-.-+..+ ....
T Consensus 273 g~~~~~~i~~~~~~~~~~-~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~--~~~~~~LrP~~~~~~~~~-~~~~~ 348 (639)
T PRK12444 273 GQIIRNELEAFLREIQKE-YNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEV--DNKSFALKPMNCPGHMLM-FKNKL 348 (639)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHhhcCChhhhhhhcCeecC--CCcEEEEccCCCHHHHHH-HhCcc
Confidence 356778899999999988 999999999998764 22311 2222221 35667774 332222222 1211
Q ss_pred ------CCceEEEeeeeecCCCCC--C--CCcceeeeeeeecCCCHHHHHHHHHHHHHHH
Q 043787 128 ------FDKYYQIARCFRDEDLRA--D--RQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 128 ------~~rvfqi~~~FR~E~~~~--~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i 177 (452)
--|+|++++|||.|.+.+ . |..||+|.|++ +|++.+++...+++++..+
T Consensus 349 ~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~ 407 (639)
T PRK12444 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQI 407 (639)
T ss_pred cChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHH
Confidence 249999999999998754 3 77899999999 7888777777755555433
|
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.2e-05 Score=80.98 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CCC------ccceeecccCCCceeeec--CCHHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EGA------RDYLVPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eGa------~~~~v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
+..-...|..+.+.+++.|.. .||.||.||++...+- -|. .+.+.... ..|+.++|+ ..|++..-.
T Consensus 14 lp~~~~~~~~i~~~i~~~~~~-~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d-~~g~~l~LRpd~T~~iaR~~ 91 (430)
T CHL00201 14 LPDEINYWQFIHDKALTLLSL-ANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTD-RSNRDITLRPEGTAGIVRAF 91 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCeeecCcccchHHHHhcccCCcccccccceEEEEc-CCCCEEEeCCCCcHHHHHHH
Confidence 445567899999999999988 9999999999987531 121 12222111 246777885 456655432
Q ss_pred Hhh-----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 123 LMV-----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 123 Lm~-----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
..- ...-|+|++|+|||.|..+..|.-||||+++|..+.
T Consensus 92 ~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~ 135 (430)
T CHL00201 92 IENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGS 135 (430)
T ss_pred HHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECC
Confidence 111 112499999999999999999999999999999986
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-05 Score=79.86 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CC---Ccc-ceeecccCCCceeeec--CCHHHHHHHHh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EG---ARD-YLVPSRVQPGTFYALP--QSPQLFKQMLM 124 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eG---a~~-~~v~~~~~~g~~~~L~--qSpQl~kq~Lm 124 (452)
+..-.+.|..+...+++.|.. +||.||+||++..... .| ... |...+. ..|+...|+ ..+++-.-...
T Consensus 13 lp~~~~~~~~i~~~l~~~f~~-~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~-~~g~~l~LRpD~T~~iaR~~a~ 90 (391)
T PRK12292 13 LPEEARKIEEIRRRLLDLFRR-WGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQ-LSGRTLGLRPDMTAQIARIAAT 90 (391)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCceeeCcchhhHHHHhccCCccchhhhEEEeec-CCCCEEEECCCCcHHHHHHHHH
Confidence 445567899999999999988 9999999999965321 11 112 222221 146777775 45565553221
Q ss_pred h----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 125 V----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 125 ~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
- ...-|+|++|+|||.|..+..|.-||+|+++|..+.
T Consensus 91 ~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~ 131 (391)
T PRK12292 91 RLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGD 131 (391)
T ss_pred hccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCC
Confidence 1 113489999999999999888989999999999886
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.2e-05 Score=84.08 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC--CCCCcc------ceeecccCCCceeeec-CC-HH---HHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST--PEGARD------YLVPSRVQPGTFYALP-QS-PQ---LFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--~eGa~~------~~v~~~~~~g~~~~L~-qS-pQ---l~kq~L 123 (452)
.-.++|..+...+|+.+.+ .||.||.||.|.... ..+++. .+... ..++.|+|. .+ |- +|++..
T Consensus 166 ~G~~i~~~L~~~~r~~~~~-~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~--~~~e~~~LrPm~cp~~~~~~~~~~ 242 (545)
T PRK14799 166 KGQTIRNELIAFMREINDS-MGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN--MEGDEYGVKPMNCPAHILIYKSKP 242 (545)
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCeEEECCccchHHHHhhccccccchhhcceee--ccCceEEeccCCCHHHHHHHhccc
Confidence 3578999999999999988 999999999987654 122221 12221 235667774 22 32 222221
Q ss_pred hhc--CCCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 124 MVS--GFDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 124 m~~--g~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
.+. ---|+|++|+|||.|.++. .|-.||||.|+.. |++.+++.+.+.+++..+..
T Consensus 243 ~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 243 RTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVE 303 (545)
T ss_pred cChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHH
Confidence 110 1238999999999999987 5888999999997 88888877777666655443
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.3e-05 Score=78.72 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--CCCc-----c-ceeecccCCCceeeec--CCHHHHHHHH
Q 043787 54 QMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--EGAR-----D-YLVPSRVQPGTFYALP--QSPQLFKQML 123 (452)
Q Consensus 54 ~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--eGa~-----~-~~v~~~~~~g~~~~L~--qSpQl~kq~L 123 (452)
.+-.-.+.+..+.+.+++.|.. .||.||+||++..... .+.+ . |...+. ..|+...|+ ..+++-.-..
T Consensus 16 ~lp~e~~~~~~i~~~l~~~f~~-~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~-~~g~~l~LRpD~T~~iaR~~a 93 (392)
T PRK12421 16 VLPEEAQKIERLRRRLLDLFAS-RGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQ-LSGRLMGVRADITPQVARIDA 93 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-cCCEEeeCcchhhHHHHhccCCccchhceEEEEcC-CCCcEEEECCcCCHHHHHHHH
Confidence 3445577889999999999988 9999999999975541 1111 1 111111 136666675 4455555211
Q ss_pred h--h-cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC-CHH---HHHHHHHHHHH
Q 043787 124 M--V-SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT-PLD---DMLRLNEDLIR 175 (452)
Q Consensus 124 m--~-~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~-~~~---dlm~~~E~li~ 175 (452)
. . ...-|+|++|+|||.+..+..|.-||+|+.+|..+. +.. +++.++-+.++
T Consensus 94 ~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~ 152 (392)
T PRK12421 94 HLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLR 152 (392)
T ss_pred hhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHH
Confidence 1 1 124599999999999998888999999999999886 332 45555444443
|
|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=79.09 Aligned_cols=97 Identities=23% Similarity=0.269 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--eEEEcCceEeecCCCCCccceeecc---cCCCceeeec--CCH---HHHHHHHhhcC
Q 043787 58 NILLRHKVVKLIRRYLEDVHG--FVEIETPVLSRSTPEGARDYLVPSR---VQPGTFYALP--QSP---QLFKQMLMVSG 127 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~g--F~EV~TPiL~~~~~eGa~~~~v~~~---~~~g~~~~L~--qSp---Ql~kq~Lm~~g 127 (452)
-.+++..|.+.+|+.|.. .| |.||+||+|.+. +.+.... ...+..++|. +.| ..++..+....
T Consensus 31 g~~l~~~i~~~~~~~~~~-~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~ 103 (254)
T cd00774 31 GVELKNNIKSAWRKSFVL-EEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNR 103 (254)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhC
Confidence 368899999999999987 74 999999999875 2221110 0123345563 333 22333322221
Q ss_pred ---CCceEEEeeeeecCCCCC---CCCcceeeeeeeecCC
Q 043787 128 ---FDKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFT 161 (452)
Q Consensus 128 ---~~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~ 161 (452)
--|+||||+|||+|.+.. .|--||||.|+|.-..
T Consensus 104 ~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 104 RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred CCCCchhhhhchhhccccCcccceeeeccchhhheeeeEC
Confidence 248999999999998766 6778999999987653
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-05 Score=85.90 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C-CCc------cceeecccCCCceeeec-CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E-GAR------DYLVPSRVQPGTFYALP-QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e-Ga~------~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~- 125 (452)
-.-.+++.++.+.+|+.+.. .||.||.||.|.+..- + .++ +.+... ..+..++|. ++-.-+..+...
T Consensus 318 P~g~~i~~~l~~~~~~~~~~-~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~--~~~~~~~Lrp~~~~~~~~~~~~~ 394 (686)
T PLN02908 318 PHGARIYNKLMDFIREQYWE-RGYDEVITPNIYNMDLWETSGHAAHYKENMFVFE--IEKQEFGLKPMNCPGHCLMFAHR 394 (686)
T ss_pred chHHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHHhhcCCccccchhccEEe--cCCeeEEEcCCCcHHHHHHHhcc
Confidence 34578999999999999988 9999999999987641 1 111 122211 134566774 332222222111
Q ss_pred --c---CCCceEEEeeeeecCCCC----CCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 126 --S---GFDKYYQIARCFRDEDLR----ADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 126 --~---g~~rvfqi~~~FR~E~~~----~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
+ ---|+|++++|||+|.+. -.|-.||||.|++. |++.+++.+.+++++..+.
T Consensus 395 ~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~ 455 (686)
T PLN02908 395 VRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLD 455 (686)
T ss_pred ccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHH
Confidence 1 123899999999999884 34668999999987 8888888888877765444
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.3e-05 Score=84.61 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC-----ccceeecccCCCceeeec-CCHHHHHHHHhh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA-----RDYLVPSRVQPGTFYALP-QSPQLFKQMLMV 125 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa-----~~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~ 125 (452)
+-.-.+++..+.+.+++.+.. .||.||.||+|...+ ..|. .+.+.... ..|+.++|+ .+...+..+...
T Consensus 266 lp~~~~~~~~i~~~~~~~~~~-~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKLRK-AGYQEVKTPQILDRELWETSGHWDHYRENMFPTTE-SDGEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred cccHHHHHHHHHHHHHHHHHH-CCCEEEECCeeCCHHHHHhcCChhhhhhccceeec-CCCcEEEEecCCcHHHHHHHhC
Confidence 345578899999999999988 999999999997764 1131 12222111 246778884 232222222111
Q ss_pred ---c--C-CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHH
Q 043787 126 ---S--G-FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDM 166 (452)
Q Consensus 126 ---~--g-~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dl 166 (452)
+ . --|+|++|+|||.|.++. .|.-||||.|+|. |.+.+..
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 1 1 249999999999998863 3778999999997 4443333
|
|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-05 Score=77.25 Aligned_cols=104 Identities=27% Similarity=0.380 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCCcc-ceeecccCCCceeeec--CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGARD-YLVPSRVQPGTFYALP--QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa~~-~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~- 125 (452)
..-.+.+..+.+.+++.|.. +||.+|+||++...+ ++...+ +...+. .|+...|+ ..+++..-+..-
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~-~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~--~G~~l~LR~D~T~~iaR~~a~~~ 83 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFER-HGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDR--SGRVLALRPDLTVPIARYVARNL 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECT--TSSEEEE-SSSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCEEEECCeEeecHHhhhccccchhhhEEEEec--CCcEeccCCCCcHHHHHHHHHhc
Confidence 34568889999999999998 999999999998753 111222 222332 57777786 345555544331
Q ss_pred --cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 126 --SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 126 --~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
.-..|+|++|+|||.+.....+.-||+|+.+|..+.+
T Consensus 84 ~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~ 122 (311)
T PF13393_consen 84 NLPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSS 122 (311)
T ss_dssp GSSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSS
T ss_pred CcCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCC
Confidence 3357899999999999887767789999999999874
|
... |
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.9e-05 Score=80.95 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc--ccee--ecccCCCceeeecCCHHHHHHHHhhc-----
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR--DYLV--PSRVQPGTFYALPQSPQLFKQMLMVS----- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~--~~~v--~~~~~~g~~~~L~qSpQl~kq~Lm~~----- 126 (452)
.-.+++.++.+.+++.+.+ .||.||.||.|.+... ++.+ +-+- .+.+ .+..++|.-..+...-.+...
T Consensus 171 ~g~~l~~aL~~~~~~~~~~-~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i-~~~~~~L~pTsE~~~~~~~~~~i~s~ 248 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEK-NGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKL-EDTDLYLIPTAEVPLTNLHRNEILEE 248 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeCCccccHHHHhhcCccccccccceEe-cCCCEEEEeCCcHHHHHHHhCcCCCh
Confidence 4578899999999999988 9999999999988752 2221 1110 0111 123356744333332222221
Q ss_pred --CCCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 127 --GFDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 --g~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
---|+|++++|||+|.+.. -|..||+|.|. .+|++.++..+..+.++...-
T Consensus 249 ~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~~ 308 (418)
T TIGR00414 249 EELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDAE 308 (418)
T ss_pred HhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHHH
Confidence 1358999999999997532 27789999999 788888888888888776543
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.2e-05 Score=76.90 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---CC---ccce-eecccCCCceeeec--CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---GA---RDYL-VPSRVQPGTFYALP--QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---Ga---~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm~- 125 (452)
..-.+.+..+...+++.|.+ +||.+|+||+|.....- ++ ...+ ..+ ..|+.+.|+ -.|++-.-...-
T Consensus 5 p~~~~~~~~i~~~l~~~~~~-~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d--~~g~~l~LRpD~T~~iaR~~~~~~ 81 (314)
T TIGR00443 5 PEEAARKEEIERQLQDVFRS-WGYQEIITPTLEYLDTLSAGGGILNEDLFKLFD--SLGRVLGLRPDMTTPIARAVSTRL 81 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCeeccCcchhhHHHhcccCCcchhceEEEEC--CCCCEEeecCcCcHHHHHHHHHhc
Confidence 34467889999999999988 99999999999775321 11 1112 222 247778886 355554433211
Q ss_pred ---cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 126 ---SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 126 ---~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
...-|+|++|+|||.|.....|--||+|+++|..+.+
T Consensus 82 ~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~ 121 (314)
T TIGR00443 82 RDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAG 121 (314)
T ss_pred ccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCC
Confidence 1235999999999999988878789999999988763
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=4e-05 Score=83.90 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC-----ccceeecccCCCceeeec-CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA-----RDYLVPSRVQPGTFYALP-QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa-----~~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~- 125 (452)
-.-.+++..+.+.+++.+.. .||.||.||+|...+ ..|. .+.+.... ..|+.++|+ .+...+..+...
T Consensus 203 p~~~~~~~~l~~~~~~~~~~-~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~~~~~~~ 280 (575)
T PRK12305 203 PKGAIIRREIEDYLRKEHLK-RGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPME-IDEEEYYLKPMNCPGHILIYKSR 280 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHhhcCCcccchhhcccccc-cCCceEEEecCCCHHHHHHHhcc
Confidence 34578899999999999988 999999999998764 1122 12221111 246677884 333333222111
Q ss_pred --c--C-CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 126 --S--G-FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 126 --~--g-~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
+ . --|+|++|+|||+|.+.. .|..||+|.|++. |.+.+...+.+.+++..+.
T Consensus 281 ~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~ 341 (575)
T PRK12305 281 LRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVL 341 (575)
T ss_pred cCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHH
Confidence 1 1 239999999999998753 3668999999995 6566665555455554333
|
|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.3e-05 Score=74.48 Aligned_cols=106 Identities=19% Similarity=0.334 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC---ccce-eecccCCCceeeec--CCHHHHHHHHhh---
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA---RDYL-VPSRVQPGTFYALP--QSPQLFKQMLMV--- 125 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa---~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm~--- 125 (452)
+....+.+..+.+.+++.|.. .||.+|+||++.....-+. .+.+ ..+ ..|+...|+ ..+++-.-...-
T Consensus 15 lp~e~~~~~~i~~~l~~vf~~-~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D--~~g~~l~LRpD~T~~iaR~~a~~~~~ 91 (281)
T PRK12293 15 FGKSAKLKREIENVASEILYE-NGFEEIVTPFFSYHQHQSIADEKELIRFSD--EKNHQISLRADSTLDVVRIVTKRLGR 91 (281)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-cCCeEeeccceeehhhhcccchhceEEEEC--CCCCEEEECCcCCHHHHHHHHHhccc
Confidence 344567889999999999988 9999999999976543211 1222 222 246666775 455555533210
Q ss_pred -cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC-CHHHHHHH
Q 043787 126 -SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT-PLDDMLRL 169 (452)
Q Consensus 126 -~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~-~~~dlm~~ 169 (452)
...-|.|++|+|||.|. .||+|+.+|..+. +..+++.+
T Consensus 92 ~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~l 131 (281)
T PRK12293 92 STEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNI 131 (281)
T ss_pred CCCceeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHH
Confidence 11349999999999874 5999999999997 44433333
|
|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.1e-05 Score=81.55 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCCccc-eeecc--cCCCceeeec---CCHHH--HH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGARDY-LVPSR--VQPGTFYALP---QSPQL--FK 120 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa~~~-~v~~~--~~~g~~~~L~---qSpQl--~k 120 (452)
+-.-...|..+...+|+-+.. .||.||.||++-... +|..... ...+. ...|+..+|+ ++|=. +.
T Consensus 14 lp~d~~~~~~i~~~~~~v~~~-yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~ 92 (429)
T COG0124 14 LPEDMALREYIESTIRKVFES-YGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVA 92 (429)
T ss_pred ChHHHHHHHHHHHHHHHHHHH-cCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHH
Confidence 334578899999999999988 999999999987654 2221100 00111 1246666775 34421 11
Q ss_pred H-HHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 121 Q-MLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 121 q-~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
+ .+...-.-|.|+++||||.|..++.|.-||+|+++|..+.
T Consensus 93 en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~ 134 (429)
T COG0124 93 ENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGS 134 (429)
T ss_pred hccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCC
Confidence 1 1112234699999999999999999999999999999996
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.4e-05 Score=81.59 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C-CCc-----cce-eecccCCCceeeec-CCHHHHHHHHhh
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E-GAR-----DYL-VPSRVQPGTFYALP-QSPQLFKQMLMV 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e-Ga~-----~~~-v~~~~~~g~~~~L~-qSpQl~kq~Lm~ 125 (452)
-.-.+++..|.+.+|+.+.. .||.||.||+|....- . |-. +.+ +..+ .|+.++|+ .+-.-+..+..-
T Consensus 197 p~g~~~~~~i~~~~~~~~~~-~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~--~~~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 197 PKGATIRNLLEDFVRQKQIK-YGYMEVETPIMYDLELWEISGHWDNYKERMFPFTEL--DNREFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHHhcCCcccchhhcceeccC--CCceEEEecCCCHHHHHHHhC
Confidence 34577899999999999988 9999999999986531 1 211 222 2221 35677884 222222222111
Q ss_pred c-----C-CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHH
Q 043787 126 S-----G-FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLI 174 (452)
Q Consensus 126 ~-----g-~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li 174 (452)
. . .-|+|++|+|||+|.+.. -|.-||+|.|+|.... .++.....++++
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i 331 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQF 331 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHH
Confidence 1 1 349999999999995542 2778999999997665 455555534443
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.2e-05 Score=82.65 Aligned_cols=121 Identities=23% Similarity=0.370 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC------CCCcc-ceeecccCCCceeeec--CCHHHHHHH
Q 043787 52 RQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP------EGARD-YLVPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 52 ~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~------eGa~~-~~v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
++.+..-...|..+...+++.|.. +||.||+||++...+. +.... |...+ +.|+...|+ -.+++-.-.
T Consensus 334 rD~lP~e~~~re~I~~~L~~vFk~-hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D--~gGr~LaLRPDlTvPiAR~v 410 (763)
T PLN02972 334 RDFAKEQMAIREKAFSIITSVFKR-HGATALDTPVFELRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYV 410 (763)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH-cCCEEccCCcccchHHhhcccCcchhheEEEEC--CCCCEEEeCCCChHHHHHHH
Confidence 345666788999999999999998 9999999999965421 11111 21222 246666675 334444432
Q ss_pred Hhhc-CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC-C----HHHHHHHHHHHHH
Q 043787 123 LMVS-GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT-P----LDDMLRLNEDLIR 175 (452)
Q Consensus 123 Lm~~-g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~-~----~~dlm~~~E~li~ 175 (452)
.+.. ..-|.|+||+|||.|.....|.-||+|+++|..+. + --+++.++-+.++
T Consensus 411 A~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~ 469 (763)
T PLN02972 411 AMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLD 469 (763)
T ss_pred HhCCCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHH
Confidence 2211 12478889999999998888889999999999885 2 2345555444443
|
|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=79.17 Aligned_cols=108 Identities=25% Similarity=0.384 Sum_probs=77.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CCC---ccce-eecccCCCceeeec--CCHHHHHH
Q 043787 52 RQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EGA---RDYL-VPSRVQPGTFYALP--QSPQLFKQ 121 (452)
Q Consensus 52 ~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eGa---~~~~-v~~~~~~g~~~~L~--qSpQl~kq 121 (452)
+..+..-.+.|..+...+++.|.. .||.||+||+|....- .|. .+.+ ..++ .|+...|+ ..|++..-
T Consensus 77 ~D~lp~~~~~~~~i~~~~~~~~~~-~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~--~g~~l~LRpD~T~~iaR~ 153 (487)
T PLN02530 77 RDFPPEDMRLRNWLFDHFREVSRL-FGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDK--GGRRVALRPELTPSLARL 153 (487)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-cCCEeccccccchHHHhccccCcccccceEEEECC--CCCEEecCCCCcHHHHHH
Confidence 344566788999999999999998 9999999999987431 121 1122 2222 46666775 34555543
Q ss_pred HHhhc----CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 122 MLMVS----GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 122 ~Lm~~----g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
..... -.-|.|++|+|||.|.....|.-||+|+++|..+.+
T Consensus 154 ~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~ 198 (487)
T PLN02530 154 VLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVP 198 (487)
T ss_pred HHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCC
Confidence 32111 124899999999999988889899999999998863
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.5e-05 Score=81.11 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCc------cce-eecccCC--Cceeee-cCC----HHHHH
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGAR------DYL-VPSRVQP--GTFYAL-PQS----PQLFK 120 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~------~~~-v~~~~~~--g~~~~L-~qS----pQl~k 120 (452)
-.+++..|.+.+++.|.. .||.||.||.|.+.+- ++++ +.+ +...... +..++| |+| -.+|+
T Consensus 43 g~~i~~~i~~~~~~~~~~-~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~ 121 (477)
T PRK08661 43 GYAIWENIQKILDKLFKE-TGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYK 121 (477)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHH
Confidence 478999999999999988 9999999999977642 2221 222 2222100 345777 566 44555
Q ss_pred HHHhhcC---CCceEEEeeeeecCCCCCC---CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 121 QMLMVSG---FDKYYQIARCFRDEDLRAD---RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 121 q~Lm~~g---~~rvfqi~~~FR~E~~~~~---r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
..+ .+- --|+||+++|||+|.+ ++ |-.||+|.|.+..+++.++..+.++.++.
T Consensus 122 ~~i-~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 122 KWI-QSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred hhh-cchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 443 221 2489999999999997 44 77899999999999999998888887774
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.5e-05 Score=78.87 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC--CC-CC-----ccceeecccCCCceeeec-CC----HHHHHHHHh
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST--PE-GA-----RDYLVPSRVQPGTFYALP-QS----PQLFKQMLM 124 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--~e-Ga-----~~~~v~~~~~~g~~~~L~-qS----pQl~kq~Lm 124 (452)
-.+++.+|.+.+|+-+.. .||.||.||.|.+.+ -. |- .+.+.... ..++.|+|. +| ..+++....
T Consensus 46 g~~i~~~i~~~i~~~~~~-~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d-~~~~~~~L~Pt~e~~~~~~~~~~~~ 123 (439)
T PRK12325 46 GLKVLKKIENIVREEQNR-AGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKD-RHDREMLYGPTNEEMITDIFRSYVK 123 (439)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHHhhcCCccccchhheEEec-CCCCEEEEcCCCcHHHHHHHHHHhh
Confidence 478899999999999988 999999999998753 11 21 13332211 135667785 34 233333321
Q ss_pred hc--CCCceEEEeeeeecCCCC-CC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 125 VS--GFDKYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 125 ~~--g~~rvfqi~~~FR~E~~~-~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
.. ---|+||+++|||+|.+. .. |-.||+|-|++....+.+++.+..++++.
T Consensus 124 syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~ 179 (439)
T PRK12325 124 SYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFV 179 (439)
T ss_pred hchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHH
Confidence 10 136899999999999443 23 77899999999888888877776666554
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=77.27 Aligned_cols=118 Identities=24% Similarity=0.370 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC----CCCCc-----c-ceeecccCCCceeeec--CCHHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST----PEGAR-----D-YLVPSRVQPGTFYALP--QSPQLFKQM 122 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~----~eGa~-----~-~~v~~~~~~g~~~~L~--qSpQl~kq~ 122 (452)
+-.-...+..+.+.+++.|.. +||.||.||+|...+ .-|.. . |...++ .|+...|+ -.+++-.-.
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~-~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~--~g~~l~LRpD~T~~iaR~v 90 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFER-YGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ--GKRDLALRYDLTIPFAKVV 90 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCEeccccccchHHHHhcccCCCcccccceEEEecC--CCceecccccccHHHHHHH
Confidence 444567889999999999988 999999999997753 10211 1 222222 46666675 334544432
Q ss_pred HhhcC---CCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC-H---HHHHHHHHHHHH
Q 043787 123 LMVSG---FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP-L---DDMLRLNEDLIR 175 (452)
Q Consensus 123 Lm~~g---~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~-~---~dlm~~~E~li~ 175 (452)
..-.. --|.|++|+|||.|.....|.-||+|+++|..+.+ . -+++.++-+.++
T Consensus 91 a~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~ 150 (423)
T PRK12420 91 AMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFR 150 (423)
T ss_pred HhCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHH
Confidence 22111 12899999999999888878889999999998862 2 344544444433
|
|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=77.94 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCCeEEEcCceEeecCC-CCCc--ccee--ecccCCCceeee-cCCHHHHHHHHhhcC--
Q 043787 57 HNILLRHKVVKLIRRYLE-DVHGFVEIETPVLSRSTP-EGAR--DYLV--PSRVQPGTFYAL-PQSPQLFKQMLMVSG-- 127 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~-~~~gF~EV~TPiL~~~~~-eGa~--~~~v--~~~~~~g~~~~L-~qSpQl~kq~Lm~~g-- 127 (452)
.-.++..++.+.+++.+. + .||.||.||.|.+... ++.+ +-+- .+.+ .+..++| ++|-+ ..-.++...
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~-~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i-~~~~~~L~pTsE~-~l~~l~~~~~~ 244 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEE-HGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKI-EDDDLYLIPTAEV-PLTNLHRDEIL 244 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCEEEeccccccHHHHhhcCccccchhhceEe-cCCCEEEEeCCcH-HHHHHHhcccC
Confidence 456788999999988888 7 9999999999988642 2221 1110 1111 1234556 45522 222222211
Q ss_pred -----CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 128 -----FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 128 -----~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
--|+|++++|||+|.+.. -|..||+|.|.. +|++.++..+..++|+...-
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~ 306 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAE 306 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 358999999999997542 267899999998 78877888888888776443
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.1e-05 Score=80.18 Aligned_cols=116 Identities=20% Similarity=0.176 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC------ccceeecccCC---Cceeeec-CC-HHHH---HH
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA------RDYLVPSRVQP---GTFYALP-QS-PQLF---KQ 121 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa------~~~~v~~~~~~---g~~~~L~-qS-pQl~---kq 121 (452)
.+++..|...+++-+.+ .||.||.||.|.+.+ -+|. .+.+....... +..++|+ +| |.++ +.
T Consensus 38 ~~i~~~I~~~i~~~~~~-~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~ 116 (472)
T TIGR00408 38 FKIWKNIQKILRNILDE-IGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhc
Confidence 57799999999999988 999999999997754 1232 13332221111 3567774 33 2222 22
Q ss_pred HHhhcC---CCceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 122 MLMVSG---FDKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 122 ~Lm~~g---~~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
.+ .+- --|+||+++|||+|.+.+ .|-.||+|.|.+..|++.++..+.++.++..
T Consensus 117 ~i-~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~ 176 (472)
T TIGR00408 117 WV-KSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDI 176 (472)
T ss_pred cc-cChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHH
Confidence 21 121 238999999999998764 3668999999999999999988887777653
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.9e-05 Score=74.42 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCC-c-ccee--ecccCCCceeeecCCHHHHHHHHhhc-----
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGA-R-DYLV--PSRVQPGTFYALPQSPQLFKQMLMVS----- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa-~-~~~v--~~~~~~g~~~~L~qSpQl~kq~Lm~~----- 126 (452)
.-.+++.+|.+.+++.+.+ .||.||.||.|.+..- ++. + +.+- ..+.. +..++|.-..+...-.+++.
T Consensus 50 ~g~~l~~~l~~~~~~~~~~-~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~-~~~~~L~pt~e~~~~~l~~~~~~s~ 127 (297)
T cd00770 50 DGALLERALINFALDFLTK-RGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE-GEDLYLIATAEVPLAALHRDEILEE 127 (297)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECcccccHHHHhhcCcCccChhcccEec-CCCEEEeecCCHHHHHHHhcccCCH
Confidence 3568899999999999988 9999999999987652 111 1 1100 01111 24456743322222222221
Q ss_pred --CCCceEEEeeeeecCCCC-------CCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 127 --GFDKYYQIARCFRDEDLR-------ADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 --g~~rvfqi~~~FR~E~~~-------~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
---|+||+++|||+|.+. --|..||+|.|++ +|.+.++..+..++++..+.
T Consensus 128 ~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~~~~~~~~l~~~~ 187 (297)
T cd00770 128 EELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISNAE 187 (297)
T ss_pred hhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHHHHHHHHHHHHHH
Confidence 135899999999999762 2367899999995 67655777777666665443
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0003 Score=73.23 Aligned_cols=107 Identities=20% Similarity=0.331 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCC--C--CC--c--cceeecccCCCceeeec--CCHHHHHHHHh--hcCCCc
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E--GA--R--DYLVPSRVQPGTFYALP--QSPQLFKQMLM--VSGFDK 130 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e--Ga--~--~~~v~~~~~~g~~~~L~--qSpQl~kq~Lm--~~g~~r 130 (452)
..+.+.+++.|.. +||.||+||++...+. . |. + -|...+. .|+...|+ ..+++-...+- .....|
T Consensus 8 ~~i~~~i~~~f~~-~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~--~G~~l~LRpD~T~piaR~~~~~~~~~p~R 84 (373)
T PRK12295 8 AAAAEALLASFEA-AGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDE--NGEELCLRPDFTIPVCRRHIATAGGEPAR 84 (373)
T ss_pred HHHHHHHHHHHHH-cCCEEeeCCccccHHHhhhccCchhhcceEEEECC--CCCEEeeCCCCcHHHHHHHHHcCCCCCeE
Confidence 3788889999988 9999999999977542 1 11 1 1222222 46666775 34444443221 123458
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecCC-C-H---HHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAFT-P-L---DDMLRLNEDLIR 175 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~-~-~---~dlm~~~E~li~ 175 (452)
+|++++|||.| ..|.-||||+++|..+. + . .+++.++-+.++
T Consensus 85 ~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~ 131 (373)
T PRK12295 85 YAYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALA 131 (373)
T ss_pred EEEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHH
Confidence 99999999999 34567999999999885 3 2 255555544443
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=78.92 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc-------cceeecccCCCceeeecCCHH-----HHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR-------DYLVPSRVQPGTFYALPQSPQ-----LFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~-------~~~v~~~~~~g~~~~L~qSpQ-----l~kq~L 123 (452)
.-.+++.++.+.+++.... +||.+|.||.|.+..- ++.+ +.+.+.. ..+.-|.|+.+.. +|++.+
T Consensus 245 ~G~~l~~~L~~~~~~~~~~-~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~-~~~~~y~l~p~~~p~~~~~~~~~~ 322 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFE-HGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMD-IEDELYQLRPMNCPYHILVYKRKL 322 (614)
T ss_pred hHHHHHHHHHHHHHHHHHH-CCCEEEECCccCCHHHHhhcCCcccchhhcccccC-CCCceEEECCCCcHHHHHHHhCcc
Confidence 3578899999999999988 9999999999987641 2211 2222111 1246677765432 222221
Q ss_pred hh--cCCCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 124 MV--SGFDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 124 m~--~g~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
-. .---|++|+++|||+|.+++ -|-.||+|.|... |++.++..+.++.++..+.
T Consensus 323 ~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~ 382 (614)
T PLN02837 323 HSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTE 382 (614)
T ss_pred CChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHH
Confidence 11 01358999999999998753 3667999999995 9988888888888776544
|
|
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.6e-05 Score=63.26 Aligned_cols=43 Identities=33% Similarity=0.405 Sum_probs=35.4
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeee
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDL 50 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~Ldl 50 (452)
++|++||.+++++|||+|..++|+...+ ..++++|++|||||+
T Consensus 66 ~~g~~El~~~~~~ils~~~~plP~~~~~------~~~~~~r~~~R~ldl 108 (108)
T cd04322 66 KTGELSIFVKEFTLLSKSLRPLPEKFHG------LTDVETRYRQRYLDL 108 (108)
T ss_pred CCCCEEEEeCEeEEeeccCCCCCCCccC------cCChhheeecccccC
Confidence 4689999999999999986567765432 367899999999996
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00026 Score=78.05 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCC------c-c-ceeecccCCCceeeec-CC-HHHHH---HH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGA------R-D-YLVPSRVQPGTFYALP-QS-PQLFK---QM 122 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa------~-~-~~v~~~~~~g~~~~L~-qS-pQl~k---q~ 122 (452)
.-.+++.++.+.+++.+.+ .||.+|.||.+...+. ... + + |.+.. .+..|+|. +| |..+. +.
T Consensus 225 ~G~~i~~~L~~~~~~~~~~-~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~---~~e~l~Lrp~~c~~~~~~~~~~ 300 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVE-LGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS---DKKDLMLRFAACFGQFLMLKDM 300 (613)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECCeecChhHHhhcccccccchhceEecC---CCceEEEecCCCHHHHHHHhCC
Confidence 4578999999999999988 9999999999854421 111 1 2 22211 23456664 22 33332 11
Q ss_pred Hhh--cCCCceEEEee-eeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 043787 123 LMV--SGFDKYYQIAR-CFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 123 Lm~--~g~~rvfqi~~-~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~ 180 (452)
..+ .---|+||+++ |||+|.++. .|-.||||.|+.....+.++.++.+++++..+..-
T Consensus 301 ~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i 365 (613)
T PRK03991 301 TISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILET 365 (613)
T ss_pred cCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 110 01348999999 999998754 26689999999865556899999988888766543
|
|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00059 Score=72.53 Aligned_cols=118 Identities=17% Similarity=0.349 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCccc--e--eecccC-C-CceeeecCC--H--HHHH-HHHhh
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGARDY--L--VPSRVQ-P-GTFYALPQS--P--QLFK-QMLMV 125 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~~~--~--v~~~~~-~-g~~~~L~qS--p--Ql~k-q~Lm~ 125 (452)
-.+++.++++.+++++.. +||+||.||.|..... +|++-+ + ..+... . ...|.+++| | -+|. +.+--
T Consensus 173 ga~L~~AL~~y~ld~~~~-~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~ 251 (448)
T PLN02678 173 GVLLNQALINFGLAFLRK-RGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDP 251 (448)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCH
Confidence 378999999999999988 9999999999987642 232211 0 011111 1 244555654 2 1222 22111
Q ss_pred c-CCCceEEEeeeeecCCCC----C---CCCcceeeeeeeecCCCHHH--HHHHHHHHHHHH
Q 043787 126 S-GFDKYYQIARCFRDEDLR----A---DRQPEFTQLDMELAFTPLDD--MLRLNEDLIRKI 177 (452)
Q Consensus 126 ~-g~~rvfqi~~~FR~E~~~----~---~r~~EFtqLe~e~~f~~~~d--lm~~~E~li~~i 177 (452)
. ---|++++++|||.|.+. + -|..+|+|+|+ .++.+.++ .....|+|+...
T Consensus 252 ~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~-f~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 252 KELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQ-FCITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred HhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEE-EEEECCCchhHHHHHHHHHHHH
Confidence 1 146999999999999873 1 26689999999 56655555 666677766544
|
|
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00046 Score=70.21 Aligned_cols=61 Identities=31% Similarity=0.568 Sum_probs=49.2
Q ss_pred CCH-HHHHHHHhhcCC--CceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHH
Q 043787 114 QSP-QLFKQMLMVSGF--DKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRK 176 (452)
Q Consensus 114 qSp-Ql~kq~Lm~~g~--~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~ 176 (452)
+|. +||+ + .-.|+ .|||.|-+|||||..+++|-+||.|+|--.+.. ++-++|.++++++..
T Consensus 318 vSArmLy~-L-Ak~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 318 VSARMLYR-L-AKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred hhHHHHHH-H-HhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhc
Confidence 344 5554 2 13444 589999999999999999999999999988874 899999999888753
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=71.43 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC-CCCCc--ccee---ecccCCCceeeec-CCHH----HHHHHHhh-c
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-PEGAR--DYLV---PSRVQPGTFYALP-QSPQ----LFKQMLMV-S 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~eGa~--~~~v---~~~~~~g~~~~L~-qSpQ----l~kq~Lm~-~ 126 (452)
.++..++++.+++.... +||.||.||.|.... -+|++ +.+. .+.. .+..+||. +|-. +|....+. .
T Consensus 233 a~Le~ALi~f~ld~~~~-~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i-e~ed~~Li~TaE~Pl~~~~~~~ils~~ 310 (502)
T PLN02320 233 VLLEMALVNWTLSEVMK-KGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI-DGSDQCLIGTAEIPVGGIHMDSILLES 310 (502)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEECCccchHHHHHhcCCCcccccCceeEE-CCCceEEeecccccccccccccccCHh
Confidence 44667888889998888 999999999998765 23333 1111 1122 23445662 2211 33322211 1
Q ss_pred -CCCceEEEeeeeecCCCCCC-------CCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 127 -GFDKYYQIARCFRDEDLRAD-------RQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 127 -g~~rvfqi~~~FR~E~~~~~-------r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
---||..+++|||.|.+... |..+|+++|. ..|+..++..+..|+|+..+..
T Consensus 311 dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~-~if~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 311 ALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEM-FVICRPEESESFHEELIQIEED 370 (502)
T ss_pred hCCceeEEeccccccccccCCCcCCCceeeeeeecccE-EEEECHHHHHHHHHHHHHHHHH
Confidence 13699999999999977322 6789999998 4678888998888888876554
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0017 Score=69.45 Aligned_cols=50 Identities=24% Similarity=0.131 Sum_probs=39.5
Q ss_pred CceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
-|+.|+|+|||+|.+.. -|-.||||.|++ .|++.+++.+.+..++..+..
T Consensus 187 lr~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 187 FGIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred eeeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 58999999999997752 144699999997 898888888877777755543
|
|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=58.93 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc----c--ceeecccCCCceeeec--CCHHHHHHHHhh-
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR----D--YLVPSRVQPGTFYALP--QSPQLFKQMLMV- 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~----~--~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~- 125 (452)
+..+..+..+.+.+++.|.. .||.+|.||++...+. .+.+ + +..-.. ..|+...|+ ..||+-.-...-
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~-~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~-~~Gr~laLRpD~T~~iAR~~a~~~ 81 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNK-ADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQ-HEHQIYALRNDFTDQLLRYYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCeEeeCCcchhHHhhhccccchhhhheeeeec-CCCCEEEEcCCCCHHHHHHHHhcC
Confidence 44566788899999999988 9999999999965432 1111 1 111111 247777775 567777632110
Q ss_pred cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHH
Q 043787 126 SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLN 170 (452)
Q Consensus 126 ~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~ 170 (452)
.+..|.|.+|+|||.+. +|+|+.+|..+.+.+...+.+
T Consensus 82 ~~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~e~l 119 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQQSF 119 (272)
T ss_pred CCCceEEEeccEeccCC-------CcceeceEEECCCchhHHHHH
Confidence 24569999999999873 389999999985544444444
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0029 Score=66.93 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHh-h---cCCCceEEEeeeeecCC-CCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 113 PQSPQLFKQMLM-V---SGFDKYYQIARCFRDED-LRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 113 ~qSpQl~kq~Lm-~---~g~~rvfqi~~~FR~E~-~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
++||.+..-+-. + ..--|+|++|+|||.|. .+++|.++|.|+|.-++. +++.+++.+++.|++++
T Consensus 188 HTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 188 HMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred CChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 367766554431 1 24569999999999995 688888999999998887 48999999999999987
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0015 Score=55.40 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhcccee
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCL 48 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~L 48 (452)
.+++||.+++++|||+|. ++|++.+ .++++|++||||
T Consensus 67 ~~~~Ei~~~~i~vl~~a~-~~pi~~~--------~~~~~~~~~rhL 103 (103)
T cd04319 67 PGGAEVHGEKLEIIQNVE-FFPITED--------ASDEFLLDVRHL 103 (103)
T ss_pred CCCEEEEEEEEEEEecCC-CCccCCC--------CCHHHHhhccCC
Confidence 357999999999999985 7887742 489999999997
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.005 Score=66.20 Aligned_cols=114 Identities=25% Similarity=0.276 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC--CCCC------ccce-eecccCCCceeeec-CCHHHHHHHHhh--
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST--PEGA------RDYL-VPSRVQPGTFYALP-QSPQLFKQMLMV-- 125 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--~eGa------~~~~-v~~~~~~g~~~~L~-qSpQl~kq~Lm~-- 125 (452)
-++++.+|.+.+|+-|.+ .|..||--|+|+++. -|.. .+.+ +..+ .+..++|. +|=+..--+ +.
T Consensus 46 g~rv~~kI~~iir~em~~-~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~dr--g~~~l~L~PTsEe~it~~-~~~~ 121 (500)
T COG0442 46 GLRVLEKIENIIREEMDK-IGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDR--GDRPLALRPTSEEVITDM-FRKW 121 (500)
T ss_pred HHHHHHHHHHHHHHHHHh-cCceEEechhcCHHHHHHHhChhhhcchhhEEEEcc--CCceeeeCCCcHHHHHHH-HHHH
Confidence 479999999999999988 999999999999843 1222 2444 4444 36677784 443332221 11
Q ss_pred -cC----CCceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 126 -SG----FDKYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 126 -~g----~~rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
.. --++|||...||+|..-+ -|--||+|=|.|..+.|.+++.+..+.++.
T Consensus 122 i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 122 IRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred hhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 11 358999999999996533 377899999999999999999999888875
|
|
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0096 Score=63.18 Aligned_cols=93 Identities=19% Similarity=0.327 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhcC--------CeEEEcC--ceEeecCCCCCccc--eeecccCCCcee-----ee--cCCHHHHHHHHhh
Q 043787 65 VVKLIRRYLEDVH--------GFVEIET--PVLSRSTPEGARDY--LVPSRVQPGTFY-----AL--PQSPQLFKQMLMV 125 (452)
Q Consensus 65 i~~~iR~ff~~~~--------gF~EV~T--PiL~~~~~eGa~~~--~v~~~~~~g~~~-----~L--~qSpQl~kq~Lm~ 125 (452)
+...|.++|.. . ||.-++. |+-+...+=.+-.+ -+|+|.....+| .| ++||-+-.- |-
T Consensus 47 ~~~~I~~~F~~-~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~~~~lLRTHTSa~q~~~--~~ 123 (460)
T TIGR00469 47 IRDLIEKKFNG-ADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYINEQHLLRAHTSAHELEC--FQ 123 (460)
T ss_pred HHHHHHHHHHh-hhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEecCCceeCCCCcHHHHHH--HH
Confidence 34445556654 4 8877776 84332222122222 246665444444 23 578754443 34
Q ss_pred cCCC-------ceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 126 SGFD-------KYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 126 ~g~~-------rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
.+.. ++...|+|||.++.+++|.|.|.|+|.-+.+
T Consensus 124 ~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~ 165 (460)
T TIGR00469 124 GGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIR 165 (460)
T ss_pred hccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEe
Confidence 4432 3899999999999999999999999954444
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.011 Score=62.23 Aligned_cols=134 Identities=18% Similarity=0.280 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCcccee----ecccCCCceeee-cCCH----HHHHHHHhh-c-
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GARDYLV----PSRVQPGTFYAL-PQSP----QLFKQMLMV-S- 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~~~~v----~~~~~~g~~~~L-~qSp----Ql~kq~Lm~-~- 126 (452)
-++--++.+.+=++..+ +||+|+.+|.|...... |++.+.. .++...+ .||| ++|= ++|..-.+. .
T Consensus 174 a~L~rAL~~f~ld~~~~-~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~-~~~LipTaEvpl~~l~~~Eil~~~~ 251 (429)
T COG0172 174 ARLERALIQFMLDLHTK-HGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP-DLYLIPTAEVPLTNLHRDEILDEED 251 (429)
T ss_pred HHHHHHHHHHHHHHHHH-cCceEeeCceeecHHHhhccCCCCCCcccceEecCC-CEEEEecchhhhHHhhccccccccc
Confidence 34555566666666766 99999999999987644 4432211 1122122 3556 4442 333322222 2
Q ss_pred CCCceEEEeeeeecCCCC----C---CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHH
Q 043787 127 GFDKYYQIARCFRDEDLR----A---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAE 197 (452)
Q Consensus 127 g~~rvfqi~~~FR~E~~~----~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~e 197 (452)
.--++.-.++|||.|.+. + .|..+|.++|. ..++..++-.+..|.|+...-.-+. .|.-||..+.+..
T Consensus 252 LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~-v~~~~Pe~S~~~~E~m~~~ae~il~--~LeLPyRvv~lct 326 (429)
T COG0172 252 LPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVEL-VVITKPEESEEELEEMLGNAEEVLQ--ELELPYRVVNLCT 326 (429)
T ss_pred CCeeeEEEChhhhcccccccccccceeeeeeeeeEEE-EEEeCcchhHHHHHHHHHHHHHHHH--HhCCCceEeeecc
Confidence 245788899999999655 2 37889999997 5567777777777887765432221 2345788877543
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=61.59 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CC-------cc-ceeec-cc-----------------------
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GA-------RD-YLVPS-RV----------------------- 104 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga-------~~-~~v~~-~~----------------------- 104 (452)
..++..++.+.+++...+..||.||-+|.|.+...- +. .+ |.|.. ..
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L 301 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKL 301 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccc
Confidence 356777777777655544369999999999886521 11 11 22310 00
Q ss_pred ---CCCceeeecCCHHHHHHHHhh------cC-CCceEEEe-eeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHH
Q 043787 105 ---QPGTFYALPQSPQLFKQMLMV------SG-FDKYYQIA-RCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLN 170 (452)
Q Consensus 105 ---~~g~~~~L~qSpQl~kq~Lm~------~g-~~rvfqi~-~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~ 170 (452)
.....|+|+-+.+...=.+.+ .. --|++++. +|||.|...+ .|..||+|.|+-. +.+.++..+..
T Consensus 302 ~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~ 380 (520)
T TIGR00415 302 KNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIR 380 (520)
T ss_pred cccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHH
Confidence 011256676554444322222 12 24799955 7999998654 4678999999987 88999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcee
Q 043787 171 EDLIRKIFLEIKDVQLPNPFPRL 193 (452)
Q Consensus 171 E~li~~i~~~~~~~~l~~pf~ri 193 (452)
++++...- .++ ..|.-||.++
T Consensus 381 e~mle~~~-~~l-~~L~Lpyrv~ 401 (520)
T TIGR00415 381 DKTLELAE-DAA-DELDLEWWTE 401 (520)
T ss_pred HHHHHHHH-HHH-HHcCCCeEEe
Confidence 99886433 222 1233455554
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0034 Score=67.83 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C--CC----c-c-ceeec-ccC---------------------
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E--GA----R-D-YLVPS-RVQ--------------------- 105 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e--Ga----~-~-~~v~~-~~~--------------------- 105 (452)
.-.+++..+.+.+++.+....||.||.||.|.+... + |- . + |.+.. ...
T Consensus 221 ~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~ 300 (517)
T PRK00960 221 PMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEK 300 (517)
T ss_pred hHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccc
Confidence 346778888888887643427999999999987642 1 11 1 1 21210 000
Q ss_pred -----CCceeeecCC--HHHH---HHHHhhcCC---CceEE-EeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHH
Q 043787 106 -----PGTFYALPQS--PQLF---KQMLMVSGF---DKYYQ-IARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLR 168 (452)
Q Consensus 106 -----~g~~~~L~qS--pQl~---kq~Lm~~g~---~rvfq-i~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~ 168 (452)
...-|.|+-+ |-.| .... .+.- -|+++ .|+|||.|...+ .|..||+|.|+- .|++.+++.+
T Consensus 301 ~~~~L~~~~yvLrPa~Cp~~y~~~~~~i-ls~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~e 378 (517)
T PRK00960 301 LKEKLRDPGYVLAPAQCEPFYQFFQGET-VDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEE 378 (517)
T ss_pred cccccccccccccccCcHHHHHHHhCCc-CChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHH
Confidence 0122344322 3222 1111 1111 27999 559999995333 367899999997 8889999999
Q ss_pred HHHHHHHHH
Q 043787 169 LNEDLIRKI 177 (452)
Q Consensus 169 ~~E~li~~i 177 (452)
.+++++.+.
T Consensus 379 e~e~ll~~~ 387 (517)
T PRK00960 379 IRDELLKYA 387 (517)
T ss_pred HHHHHHHHH
Confidence 999998543
|
|
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.015 Score=59.52 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=88.3
Q ss_pred HhhhhccceeeecchHHH----HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCC-----Cccce-eecccC
Q 043787 39 EEIRLRYRCLDLRRQQMN----HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEG-----ARDYL-VPSRVQ 105 (452)
Q Consensus 39 ~~~rl~~r~LdlR~~~~~----~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eG-----a~~~~-v~~~~~ 105 (452)
.++..+.-++.--.+-+- --+|.-.++++.++.-|+. -|=.+|.-|+|++.. ..| +.|++ +-+|
T Consensus 28 q~LL~e~GfI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs-~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr-- 104 (457)
T KOG2324|consen 28 QELLQEVGFIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQS-GGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDR-- 104 (457)
T ss_pred HHHHHHhCccccCCCCceeeccchHHHHHHHHHHHHHHHHh-ccCeeEeecccChHHHHHhcCcccccchhheEeecc--
Confidence 344445555443333222 2356668899999999988 999999999998653 111 23444 4444
Q ss_pred CCceeeecCCHHHHHHHHhhcC--------CCceEEEeeeeecCCC---CCCCCcceeeeeeeecCCCHHHHHHHHHH--
Q 043787 106 PGTFYALPQSPQLFKQMLMVSG--------FDKYYQIARCFRDEDL---RADRQPEFTQLDMELAFTPLDDMLRLNED-- 172 (452)
Q Consensus 106 ~g~~~~L~qSpQl~kq~Lm~~g--------~~rvfqi~~~FR~E~~---~~~r~~EFtqLe~e~~f~~~~dlm~~~E~-- 172 (452)
.|+-|.|+-.-+=-.-.||+.- --|+|||+|=||||-. +--|--||.|=|+|.--.|.+..|+.-+.
T Consensus 105 ~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~ 184 (457)
T KOG2324|consen 105 KGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVD 184 (457)
T ss_pred CCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHH
Confidence 5778888644433333334432 2489999999999932 23466899999998655678777765433
Q ss_pred -HHHHHHHHh
Q 043787 173 -LIRKIFLEI 181 (452)
Q Consensus 173 -li~~i~~~~ 181 (452)
.-..+|+++
T Consensus 185 ~aY~~iFkqL 194 (457)
T KOG2324|consen 185 QAYDRIFKQL 194 (457)
T ss_pred HHHHHHHHHc
Confidence 233455443
|
|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.024 Score=59.18 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC--CCc------cceeecccCCCceeeec--CCHHHHHHH--
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE--GAR------DYLVPSRVQPGTFYALP--QSPQLFKQM-- 122 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e--Ga~------~~~v~~~~~~g~~~~L~--qSpQl~kq~-- 122 (452)
+-...+....|.+.+++.|.. .||..|+||+|...++- +++ -|.+.+. .|+-..|+ -.++.-...
T Consensus 13 Lp~e~~~~~~i~~~l~~~f~~-~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~--~g~~l~LRpD~T~pVaR~~~~ 89 (390)
T COG3705 13 LPLEARRKEEIRDQLLALFRA-WGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDE--TGGRLGLRPDFTIPVARIHAT 89 (390)
T ss_pred chhHHhhHHHHHHHHHHHHHH-hCCccccccccchhhhhhhccchhhhhhheEEecC--CCCeEEecccccHHHHHHHHH
Confidence 334456677888889999988 99999999999987753 211 2333332 35546665 233333322
Q ss_pred HhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 123 Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
.+.++..|+...|++||..+.+..++.||+|+-+|.-+.
T Consensus 90 ~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 90 LLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGD 128 (390)
T ss_pred hcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCC
Confidence 234567899999999999966666667999999999885
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.12 Score=56.75 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C--C---Ccc-ceeecccCCCceeeecCC--HHHHHHHHhh-cC--C
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E--G---ARD-YLVPSRVQPGTFYALPQS--PQLFKQMLMV-SG--F 128 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e--G---a~~-~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~-~g--~ 128 (452)
..++.+.+|++|.. .||.|+-|..+++..- . | ..+ ..+.... ....-+|++| |.+..-+--. .+ -
T Consensus 361 ~~~~~~~ir~~L~~-~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPl-s~e~svLRtsLlpgLL~~~~~N~~~~~~ 438 (552)
T PRK09616 361 IEKLERAIRDLMVG-LGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPI-SEDYTVVRTSLLPSLLEFLSNNKHREYP 438 (552)
T ss_pred HHHHHHHHHHHHHh-CCcceeccceEechHHHHHHhCCCCCCCeEEEcCCC-ccchheEeccchHHHHHHHHhccCCCCC
Confidence 35567789999988 9999999999987621 1 1 101 1111111 1222357766 7776654321 11 1
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIR 175 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~ 175 (452)
-|+|+||+||+.+..+..+-.|+++|.+-+++. ++.++...+|.++.
T Consensus 439 ~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~ 487 (552)
T PRK09616 439 QKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLR 487 (552)
T ss_pred eeEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 389999999998653333325999999988883 88999998888885
|
|
| >COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.16 Score=54.43 Aligned_cols=115 Identities=19% Similarity=0.322 Sum_probs=83.5
Q ss_pred cccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccC-----cchHHHHHcCCCCccEEEEecCCCcccc
Q 043787 214 QLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKG-----DIYNEAIKSGAKGLPFLKVLDAGGVEGI 288 (452)
Q Consensus 214 ~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~-----~~~~~~~~~~~~gl~~~~~~~~~~~~~~ 288 (452)
+..|++++|.++..++....++.||.|.++..|+=..-+. .+++.+ ++..+|+.+|.+|+.. .| ++.+
T Consensus 281 ~~~DVTdlF~~TkSkiI~~~l~~gG~V~A~~l~~f~GlvG-~EiqpGrRlGtE~AD~ar~~GvgGlfH----sD-ELP~- 353 (631)
T COG2511 281 EVFDVTDLFANTKSKIIRSGLKKGGKVYAVLLPGFAGLVG-REIQPGRRLGTEFADYARAYGVGGLFH----SD-ELPG- 353 (631)
T ss_pred ccccHHHHhccCchHHHHHhhccCCeEEEEEcCCcccccc-ccccCCcccchHHHHHHHHhCCCcccc----cc-cCcc-
Confidence 3458999999999999999999999999998886322111 122221 2345688899999854 22 1321
Q ss_pred ccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHH
Q 043787 289 PALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHE 339 (452)
Q Consensus 289 ~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~ 339 (452)
--+++++.+++.+++|+.++|-++++|+....+..++-++-..+...
T Consensus 354 ----YGIteeEV~~v~d~lga~~~Davvlva~~~~~~~~a~~~V~~Ra~~a 400 (631)
T COG2511 354 ----YGITEEEVEAVRDALGAGEEDAVVLVAGEEERAKRALEAVIERAKEA 400 (631)
T ss_pred ----CCCCHHHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 23789999999999999999999999999987777776665444433
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.051 Score=59.71 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCCcc------ceeecccCCCceeeec--CCH---HHHHHHHh
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGARD------YLVPSRVQPGTFYALP--QSP---QLFKQMLM 124 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa~~------~~v~~~~~~g~~~~L~--qSp---Ql~kq~Lm 124 (452)
..+|+.+.+.+|.-... .||.||.||.+.... ..|-.+ |.+.+ .++.|+|. ..| +.|++.+-
T Consensus 220 ~~ir~~le~y~~~~~~~-~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~---~~~~~~lKpmNCpgh~~ifk~~~~ 295 (589)
T COG0441 220 ATIRNLLEDYVRTKLRS-YGYQEVKTPVLADLELWELSGHWDNYKEDMFLTES---DDREYALKPMNCPGHILIFKSGLR 295 (589)
T ss_pred ccHHHHHHHHHHHHHHh-cCceEecCCeeeecccchhccchhhccccceeecc---CChhheeeeccCHhHHHHHhcCCc
Confidence 47899999999999988 999999999997754 223322 11111 12345552 233 34444321
Q ss_pred hc--CCCceEEEeeeeecCCCCCCC----CcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 125 VS--GFDKYYQIARCFRDEDLRADR----QPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 125 ~~--g~~rvfqi~~~FR~E~~~~~r----~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
+- -.-|++++|.|||.|.+++.+ --+|||=|. -.|+..+++.+.+.+.+..+..-.
T Consensus 296 SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDa-Hifc~~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 296 SYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDA-HIFCTPDQIKDEFKGILELILEVY 357 (589)
T ss_pred ceeccchhhhhcceeecccCcchhhccccccceeeccc-ceeccHHHHHHHHHHHHHHHHHHH
Confidence 11 124889999999999998754 369999887 567888899988888887666433
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.19 Score=47.40 Aligned_cols=107 Identities=23% Similarity=0.312 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC-CC----CCcc-ceeecccCCCceeeecCC--HHHHHHHHhh--cC--CCc
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST-PE----GARD-YLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG--FDK 130 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~e----Ga~~-~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g--~~r 130 (452)
..+.+.+|++|.. .||.||-|..+++.. .. +..+ ..+.... ....-+|++| |.|.+-+.-. .+ --|
T Consensus 3 ~~~~~~ir~~L~~-~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPi-s~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~ 80 (198)
T cd00769 3 QKLERKLRRLLAG-LGFQEVITYSLTSPEEAELFDGGLDEAVELSNPL-SEEYSVLRTSLLPGLLDALARNLNRKNKPLR 80 (198)
T ss_pred hHHHHHHHHHHHH-CCCceeecccCCCHHHHHhccCCCCCeEEEcCCC-chhHHHHHHHHHHHHHHHHHHHhcCCCCCEe
Confidence 3456778999988 999999999997662 11 0101 1111110 1111135555 5655544221 22 348
Q ss_pred eEEEeeeeecCCCCCCCC-cceeeeeeeecC-------------CCHHHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQ-PEFTQLDMELAF-------------TPLDDMLRLNEDLIR 175 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f-------------~~~~dlm~~~E~li~ 175 (452)
+|+||+||..+.. . .|.+.|=+-+++ +++.++...+|.++.
T Consensus 81 lFEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~ 135 (198)
T cd00769 81 LFEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLR 135 (198)
T ss_pred EEEeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHH
Confidence 9999999976531 3 255555444444 266677777777764
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.31 Score=51.22 Aligned_cols=115 Identities=24% Similarity=0.377 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeec------CCCCCccceeecccCCCceee----ecCCHHHHHHHHhh
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS------TPEGARDYLVPSRVQPGTFYA----LPQSPQLFKQMLMV 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~------~~eGa~~~~v~~~~~~g~~~~----L~qSpQl~kq~Lm~ 125 (452)
-+-+.+|..+...+++-|.. +|...|+||++.-- -.|.. ...-.-..+.|+-.. |+++=--|. .|.
T Consensus 71 p~qm~lRe~if~~i~~vFkr-hGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVPfARyl--AmN 146 (518)
T KOG1936|consen 71 PEQMALREKIFSTIKEVFKR-HGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVPFARYL--AMN 146 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccHHHHHH--HHc
Confidence 34578999999999999988 99999999986422 12222 111111122344333 454433332 233
Q ss_pred cCC--CceEEEeeeeecCCCC--CCCCcceeeeeeeecCC-----CHHHHHHHHHHHHH
Q 043787 126 SGF--DKYYQIARCFRDEDLR--ADRQPEFTQLDMELAFT-----PLDDMLRLNEDLIR 175 (452)
Q Consensus 126 ~g~--~rvfqi~~~FR~E~~~--~~r~~EFtqLe~e~~f~-----~~~dlm~~~E~li~ 175 (452)
.. -+-|+||++||-+... ..|--||+|+|+-.++. --.+++..+-+++.
T Consensus 147 -ki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~ 204 (518)
T KOG1936|consen 147 -KITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILS 204 (518)
T ss_pred -ccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHh
Confidence 22 3579999999998764 34568999999999881 23444554444443
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.3 Score=52.16 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEee-cCCCCC--ccceeecccCCCceeeec----CCHHHHHHHHhh-c
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSR-STPEGA--RDYLVPSRVQPGTFYALP----QSPQLFKQMLMV-S 126 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~-~~~eGa--~~~~v~~~~~~g~~~~L~----qSpQl~kq~Lm~-~ 126 (452)
.-.+-.+|+.+...+.+.|.. +|++|++||-+.. +.|.-+ ..+.+-++ .|....|+ +---=|.- +. .
T Consensus 928 ~~~~~~l~~~v~e~~~~ifr~-Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~--sG~~v~Lp~DLr~pfar~vs--~N~~ 1002 (1351)
T KOG1035|consen 928 TEINNELREYVVEEVVKIFRK-HGAIELETPPLSLRNACAYFSRKAVELLDH--SGDVVELPYDLRLPFARYVS--RNSV 1002 (1351)
T ss_pred chhHHHHHHHHHHHHHHHHHH-hcceeccCCccccccccchhccceeeeecC--CCCEEEeeccccchHHHHhh--hchH
Confidence 344567889999999999988 9999999996543 333322 22333332 34433332 11111110 00 0
Q ss_pred CCCceEEEeeeeecCCCCCCCCc-ceeeeeeeecCC----CHHHHHHHHHHHHHHHHHH
Q 043787 127 GFDKYYQIARCFRDEDLRADRQP-EFTQLDMELAFT----PLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 127 g~~rvfqi~~~FR~E~~~~~r~~-EFtqLe~e~~f~----~~~dlm~~~E~li~~i~~~ 180 (452)
-.-|-|+|++|||-+. .+ || |++.+++-...- ...+++.++-+++..++.+
T Consensus 1003 ~~~Kry~i~rVyr~~~--~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~ 1058 (1351)
T KOG1035|consen 1003 LSFKRYCISRVYRPAI--HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHE 1058 (1351)
T ss_pred HHHHHhhhheeecccc--cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 1246689999999998 33 86 999999988774 3467777777777766543
|
|
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=89.91 E-value=24 Score=35.79 Aligned_cols=104 Identities=19% Similarity=0.317 Sum_probs=66.8
Q ss_pred cCCeEEEcCceEeecCCC------CC-cc--ceeecccCCCceeeecCCHHHHHHHHhh-cCC---CceEEEeeeeec-C
Q 043787 76 VHGFVEIETPVLSRSTPE------GA-RD--YLVPSRVQPGTFYALPQSPQLFKQMLMV-SGF---DKYYQIARCFRD-E 141 (452)
Q Consensus 76 ~~gF~EV~TPiL~~~~~e------Ga-~~--~~v~~~~~~g~~~~L~qSpQl~kq~Lm~-~g~---~rvfqi~~~FR~-E 141 (452)
+.+.+.|..|+++..... |. ++ |.++. .++..+-.-+|=-=+|.+.+. -|| +-+|+=..+.|. |
T Consensus 18 ~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~--~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE 95 (309)
T cd00645 18 ELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKA--LPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDE 95 (309)
T ss_pred HhCeEEecCCeEEecCCCCccCCCCcccceEeecCC--CCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCc
Confidence 468999999999765432 21 12 22221 134555567787778777543 233 447777776665 7
Q ss_pred CCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 142 DLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 142 ~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
+.+..|.-=--|-|||..-...+--++.+.+.++.|+..+
T Consensus 96 ~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~i 135 (309)
T cd00645 96 DLDNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAI 135 (309)
T ss_pred ccCccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHH
Confidence 8877777777899999988655555666666666666543
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=27 Score=35.92 Aligned_cols=123 Identities=16% Similarity=0.319 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhh----cCCeEEEcCceEeecCCC--C---Ccccee--ecccCCCceeeecCCHHHHHHHHhh-c
Q 043787 59 ILLRHKVVKLIRRYLED----VHGFVEIETPVLSRSTPE--G---ARDYLV--PSRVQPGTFYALPQSPQLFKQMLMV-S 126 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~----~~gF~EV~TPiL~~~~~e--G---a~~~~v--~~~~~~g~~~~L~qSpQl~kq~Lm~-~ 126 (452)
++.....+..++++|.. +.+.+.|..|+++..... . +-+-.| .....++..+-..+|=--+|.+.+. -
T Consensus 8 ~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y 87 (348)
T PTZ00213 8 YIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEH 87 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhc
Confidence 34444555556666543 368999999999865422 0 111111 1111134555667887778877544 2
Q ss_pred CC---CceEEEeeeee-cCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 127 GF---DKYYQIARCFR-DEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 127 g~---~rvfqi~~~FR-~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
|| +-+|+=.++.| +|+.+..|.-=--|-|||+.-...+--++.+.+.++.|+..+
T Consensus 88 ~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~i 146 (348)
T PTZ00213 88 KFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAI 146 (348)
T ss_pred CCCCCceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHH
Confidence 33 44788666666 577777777777899999998655555666666666665543
|
|
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=87.14 E-value=3.3 Score=45.54 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecC-C-C--CCc--cceeecccCCCceeeecCC--HHHHHHHHhh-cCC--Cc
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRST-P-E--GAR--DYLVPSRVQPGTFYALPQS--PQLFKQMLMV-SGF--DK 130 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~-e--Ga~--~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~-~g~--~r 130 (452)
..++.+.+|++|.. .||.|+-|-.+++.. . + |-. +.....+......=+|++| |.+-+-+--. .+. -|
T Consensus 364 ~~~~~~~ir~~L~~-~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~ 442 (551)
T TIGR00471 364 LNKVSDIIREIMVG-LGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQK 442 (551)
T ss_pred HHHHHHHHHHHHHh-CCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCee
Confidence 45677889999988 999999999998752 1 1 100 1111111001122246666 6665544211 111 37
Q ss_pred eEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHH
Q 043787 131 YYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIR 175 (452)
Q Consensus 131 vfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~ 175 (452)
+|+||+||...+....+..++.++-+-+++ +++.++...+|.++.
T Consensus 443 lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~ 489 (551)
T TIGR00471 443 IFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAR 489 (551)
T ss_pred EEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999996533211244666788777765 488999998888885
|
Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. |
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=87.01 E-value=39 Score=34.64 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=67.9
Q ss_pred HhhcCCeEEEcCceEeecCCC------CC-c--cceeecccCCCceeeecCCHHHHHHHHhh-cCC---CceEEEeeeee
Q 043787 73 LEDVHGFVEIETPVLSRSTPE------GA-R--DYLVPSRVQPGTFYALPQSPQLFKQMLMV-SGF---DKYYQIARCFR 139 (452)
Q Consensus 73 f~~~~gF~EV~TPiL~~~~~e------Ga-~--~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~-~g~---~rvfqi~~~FR 139 (452)
|..+.+.+.|..|+++..... |. + .|.++. .++..+-..+|=-=+|.+.+. -|| +-+|+=..+.|
T Consensus 26 L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~--~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR 103 (327)
T PRK05425 26 LAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKD--LPDATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIR 103 (327)
T ss_pred HHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccC--CCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCcccc
Confidence 333468999999999765422 11 1 122222 134455567887778877544 233 34777777666
Q ss_pred c-CCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 140 D-EDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 140 ~-E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
. |+.+..|.-=--|-|||..-...+--++.+.+.++.|+..+
T Consensus 104 ~dE~ld~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~i 146 (327)
T PRK05425 104 PDEDLDNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAI 146 (327)
T ss_pred CCcccCcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHH
Confidence 5 78788777777899999988655555666666666666543
|
|
| >PLN02734 glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=86.55 E-value=0.31 Score=54.41 Aligned_cols=69 Identities=28% Similarity=0.288 Sum_probs=39.2
Q ss_pred ceEEEeeeeecCC-CCC--CCCcceeeeeeeecCCCHHHH----HHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHH
Q 043787 130 KYYQIARCFRDED-LRA--DRQPEFTQLDMELAFTPLDDM----LRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMS 200 (452)
Q Consensus 130 rvfqi~~~FR~E~-~~~--~r~~EFtqLe~e~~f~~~~dl----m~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~ 200 (452)
-+-|||++||||= .|. -|--||||.|+|. |++.++- ...+.++.-.++..-....-..+ .+||..||++
T Consensus 277 ~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~-Fv~P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~-~~~t~~eAv~ 352 (684)
T PLN02734 277 AAAQIGQAFRNEISPRQGLLRVREFTLAEIEH-FVDPEDKSHPKFSEVADLEFLLFPREEQLGGQKA-KPMRLGEAVS 352 (684)
T ss_pred eeeeccHhhhcccCcccceeeechhhhhhhhe-ecCcccccccchhhhhhhhhhcccHhhhhccCCc-ccccHHHHHH
Confidence 4789999999993 333 3778999999986 5544321 22233322222211100000123 4889999887
|
|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=83.09 E-value=2.2 Score=44.05 Aligned_cols=99 Identities=31% Similarity=0.431 Sum_probs=51.6
Q ss_pred EcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCC-CccChhhhhhceeee
Q 043787 318 AVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPE-DMDDLSSARALAYDM 396 (452)
Q Consensus 318 ~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~e-d~~~~~~v~a~~YDL 396 (452)
+.++.-......|.|...+...+| .+-.-||.++.+|||-|..| |+.- ..+.+... -
T Consensus 215 vvd~~vtf~dLK~~L~~fl~~~fg--------------------~~~~~R~rpsyFPFTePS~Evdv~~-~~~~g~gc-~ 272 (339)
T PRK00488 215 VVDKNISFADLKGTLEDFLKAFFG--------------------EDVKIRFRPSYFPFTEPSAEVDVSC-FKCGGKGC-R 272 (339)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHcC--------------------CCCeEEecCCCCCCCCCceEEEEEE-eccCCCcc-c
Confidence 344444556666666655554443 11134788889999999642 1100 00000000 0
Q ss_pred ee--cCe-EeeccccccccHHHHHHHHHHcCCCHHHHh-hhhhhhh---hhhhcC
Q 043787 397 VY--NGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFI-FAEVVAI---PALSSG 444 (452)
Q Consensus 397 Vl--NG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~-~~f~~~l---~a~~~G 444 (452)
|| .|+ ||+|..+ +--.|++..|++++.+. ++||+=| -.++||
T Consensus 273 ~ck~~~WiEilG~Gm------v~p~vl~~~gid~~~~~G~AfG~GleRlaMl~yg 321 (339)
T PRK00488 273 VCKGTGWLEILGCGM------VHPNVLRNVGIDPEEYSGFAFGMGIERLAMLKYG 321 (339)
T ss_pred ccCCCCceEEeccCc------cCHHHHHHcCCCcccceEEEEeecHHHHHHHHhC
Confidence 22 255 9776554 22457789999998653 4444322 345565
|
|
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=82.91 E-value=0.73 Score=49.20 Aligned_cols=59 Identities=20% Similarity=0.409 Sum_probs=43.2
Q ss_pred cccccccccCcCCCCCCCccChhhhhhceeeeeecCe--EeeccccccccHHHHHHHHHHcCCCHHH-Hhhhhhhhhhhh
Q 043787 365 EQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGV--EIGGGSLRIYKREVQQKVLEIVGISPEQ-FIFAEVVAIPAL 441 (452)
Q Consensus 365 ~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~--EiGGGSiRIh~~elQ~~if~~lg~~~~~-~~~~f~~~l~a~ 441 (452)
.-||.++.+|||.| |...|+-++|- ||||..+ +-..|++..|++++. .-|.||+=|+-+
T Consensus 264 ~~r~~ps~fPfteP------------s~evdi~~~g~WiEi~gcG~------v~p~vl~~~g~~~~~~~g~AfGiGleRl 325 (460)
T TIGR00469 264 KVRWIDAYFPFTAP------------SWEIEIWFKDEWLELCGCGI------IRHDILLRAGVHPSETIGWAFGLGLDRI 325 (460)
T ss_pred eEEEEeccCCCCCc------------ceEEEEEECCeeEEEeeecc------CcHHHHHHcCCCccceEEEEEEecHHHH
Confidence 35899999999998 45678888996 9998775 335678888998875 235555545544
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.64 E-value=2.5 Score=44.68 Aligned_cols=114 Identities=21% Similarity=0.343 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---C-----Ccc-ceeecccCCCceeeecCCHHHHHHHH-----
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---G-----ARD-YLVPSRVQPGTFYALPQSPQLFKQML----- 123 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---G-----a~~-~~v~~~~~~g~~~~L~qSpQl~kq~L----- 123 (452)
...+-.++++..-+|+.. +||+-+.||.+.+.... | -.+ +.+. .++..-||.-..++-.-.+
T Consensus 184 ~a~LeqALi~yal~~l~~-kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~l---d~~~~~~LiaTaE~plAa~~~~e~ 259 (455)
T KOG2509|consen 184 GAFLEQALINYALDFLNA-KGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVL---DGGDEKYLIATAEQPLAAYHRDEW 259 (455)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCccccCchhhhHHHHHHhccCcCCCcceEEee---cCCccceeEeeccchhhhhhcccc
Confidence 466778889999999988 99999999999876521 1 111 1111 1221223533333222211
Q ss_pred hhc-C-CCceEEEeeeeecCCCCC---C----CCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 124 MVS-G-FDKYYQIARCFRDEDLRA---D----RQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 124 m~~-g-~~rvfqi~~~FR~E~~~~---~----r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
+.- - --||-.+++|||.|-+.+ . |=.+|+-+|.- +..+.++--++.|+||..
T Consensus 260 ~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~F-vit~Pe~S~~~~eEmi~~ 320 (455)
T KOG2509|consen 260 LEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQF-VITGPEDSWEMLEEMINN 320 (455)
T ss_pred cccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEE-EecCcchhHHHHHHHHHH
Confidence 111 1 247888899999996332 1 44799999962 334555555555555543
|
|
| >PRK14894 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.07 E-value=0.98 Score=48.86 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhh-cCCeEEEcCceEeec
Q 043787 59 ILLRHKVVKLIRRYLED-VHGFVEIETPVLSRS 90 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~-~~gF~EV~TPiL~~~ 90 (452)
..+++.|.+.-|++|.- +.+..||+||+|+..
T Consensus 40 ~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~ 72 (539)
T PRK14894 40 VELKNNIIADWWRTNVYERDDMEGLDAAILMNR 72 (539)
T ss_pred HHHHHHHHHHHHHHHeeccCCEEEeeccccCCH
Confidence 46777888888887743 368899999997654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 452 | ||||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 1e-100 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 1e-100 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 3e-97 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 5e-84 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 3e-16 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 4e-16 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 4e-16 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 2e-15 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 4e-15 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 7e-14 | ||
| 4dpg_A | 513 | Crystal Structure Of Human Lysrs: P38/aimp2 Complex | 9e-14 | ||
| 3bju_A | 521 | Crystal Structure Of Tetrameric Form Of Human Lysyl | 1e-13 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 3e-13 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 5e-13 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 9e-12 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 9e-12 | ||
| 3g1z_A | 326 | Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe | 7e-10 | ||
| 3a5z_A | 328 | Crystal Structure Of Escherichia Coli Genx In Compl | 3e-09 | ||
| 3a5y_A | 345 | Crystal Structure Of Genx From Escherichia Coli In | 3e-09 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 6e-09 | ||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 2e-08 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 3e-08 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 6e-06 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 1e-04 |
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 | Back alignment and structure |
|
| >pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase From Salmonella Typhimurium Length = 326 | Back alignment and structure |
|
| >pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 328 | Back alignment and structure |
|
| >pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex With Lysyladenylate Analog Length = 345 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
|
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 635 bits (1640), Expect = 0.0
Identities = 202/440 (45%), Positives = 272/440 (61%), Gaps = 28/440 (6%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNI 59
M TG IEV + ++N R+ LP D EE RL+YR LDLRR +M +
Sbjct: 87 MATGEIEVLASSLTIIN--RADVLPL-----DSNHV-NTEEARLKYRYLDLRRPEMAQRL 138
Query: 60 LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLF 119
R K+ L+RR+++D HGF++IETP+L+++TPEGARDYLVPSRV G FYALPQSPQLF
Sbjct: 139 KTRAKITSLVRRFMDD-HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLF 197
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179
KQ+LM+SGFD+YYQI +CFRDEDLRADRQPEFTQ+D+E +F + + E L+R ++L
Sbjct: 198 KQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWL 257
Query: 180 EIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDS-LKSGG 238
E+K V L FP +T+AEA RYGSD+PD R ++L DV+D+ F VF+ G
Sbjct: 258 EVKGVDLG-DFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKG 316
Query: 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLDAGGVEGIPALVSS--- 294
+ L VP GA + K+ D Y +K GAKGL ++KV + +G+ + S
Sbjct: 317 RVAALRVPGGAS-LTR---KQIDEYGNFVKIYGAKGLAYIKVNERA--KGLEGINSPVAK 370
Query: 295 -LGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWI 353
L E +L R +A D+I F + V + LR V +LGL D SK + LW+
Sbjct: 371 FLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWV 430
Query: 354 TDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVYNGVEIGGGSLR 409
DFPMFE + E L A+HHPFT+P +L + A A AYDMV NG E+GGGS+R
Sbjct: 431 IDFPMFEDDG-EGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVR 489
Query: 410 IYKREVQQKVLEIVGISPEQ 429
I+ ++QQ V I+GI+ E+
Sbjct: 490 IHNGDMQQTVFGILGINEEE 509
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 627 bits (1620), Expect = 0.0
Identities = 200/440 (45%), Positives = 272/440 (61%), Gaps = 32/440 (7%)
Query: 1 MKTGFIEVAVEHVQVLNAVRSK-LPFLVTTADDAKDF--VKEEIRLRYRCLDLRRQQMNH 57
+ TG +EV + ++VL +K PF V ++ EE+RL+YR LDLRR++M
Sbjct: 85 LATGRVEVELSALEVLA--EAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQE 142
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQ 117
N+ LRH+V+K I +L+ GFV++ETP L++STPEGARD+LVP R +PG FYALPQSPQ
Sbjct: 143 NLRLRHRVIKAIWDFLDR-EGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQ 201
Query: 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177
LFKQMLMV+G D+Y+QIARCFRDEDLRADRQP+FTQLD+E++F ++D+L LNE L+ +
Sbjct: 202 LFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHV 261
Query: 178 FLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSG 237
F E V+LP PFPRL+Y EAM RYGSD+PD RF L+L +V +F +S FRVF +
Sbjct: 262 FREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQE----A 317
Query: 238 GIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-GAKGLPFLKVLDAGGVEGIPALVSSLG 296
+K L +P S K+ E K A+GL + +V + G +
Sbjct: 318 ESVKALALPKA---LSR---KEVAELEEVAKRHKAQGLAWARVEEGG-------FSGGVA 364
Query: 297 ---PSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWI 353
+E LL A P D +LF G L +R A LGL LW+
Sbjct: 365 KFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-GFRFLWV 423
Query: 354 TDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVYNGVEIGGGSLR 409
DFP+ EW++ E+ +HHPFT+P+PED+ L RALAYD+V NGVE+GGGS+R
Sbjct: 424 VDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIR 483
Query: 410 IYKREVQQKVLEIVGISPEQ 429
I+ +Q +V ++GI E+
Sbjct: 484 IHDPRLQARVFRLLGIGEEE 503
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-33
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 30/212 (14%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
E+ E + VLN + LP T A+ + RL R +DLRR ++ +R V
Sbjct: 88 FEILPEKIVVLNRAETPLPLDPTGKVKAEL----DTRLDNRFMDLRRPEVMAIFKIRSSV 143
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQLFKQ 121
K +R + + +GF+EI TP + + EG + + P ++ L QSPQL+KQ
Sbjct: 144 FKAVRDFFHE-NGFIEIHTPKIIATATEGG------TELFPMKYFEEDAFLAQSPQLYKQ 196
Query: 122 MLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTP-LDDMLRLNEDLIRKIF- 178
++M SG D+ Y+IA FR E+ R E +D E+AF ++++ E L+
Sbjct: 197 IMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAIN 256
Query: 179 ---------LEIKDVQLPN---PFPRLTYAEA 198
L+I + +L PFPR++Y +A
Sbjct: 257 YVREHNAKELDILNFELEEPKLPFPRVSYDKA 288
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 18/79 (22%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
+ +P E + PF ++ A+D+ Y GVEI G R +
Sbjct: 328 LYQYPS------EAK------PFYIMKYDNK-PEIC----RAFDLEYRGVEISSGGQREH 370
Query: 412 KREVQQKVLEIVGISPEQF 430
+ ++ + ++ G++PE F
Sbjct: 371 RHDILVEQIKEKGLNPESF 389
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 30/211 (14%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
IE+ E + +L+ ++ LP V+ A + RLR R LDLRRQ+M I ++
Sbjct: 85 IELHAEEITLLSKAKAPLPLDVSGKVKADI----DTRLRERVLDLRRQEMQAVIKIQSLA 140
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQLFKQ 121
+K R L GF+EI TP + S EG +++ P ++ L QSPQL+K+
Sbjct: 141 LKAFRETLYK-EGFIEIFTPKIIASATEGG------AQLFPVIYFGKEAFLAQSPQLYKE 193
Query: 122 MLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIF-- 178
+ M ++ +++A +R E+ EF +D+E+AF +D+++L E ++ I
Sbjct: 194 L-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKT 252
Query: 179 --------LEIKDVQLP---NPFPRLTYAEA 198
L+I + + P P RL Y EA
Sbjct: 253 IKEEGKEELKILNYEPPEVKIPIKRLKYTEA 283
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 337 AHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYD 395
L + K + +I D+P + R PF T E+ + ++D
Sbjct: 303 PELRILNEELKEDLYFIVDWPS------DAR------PFYTKSKSEN-----PELSESFD 345
Query: 396 MVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQF 430
++Y +EI GS R +KREV ++ L+ G+ PE F
Sbjct: 346 LIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESF 380
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 3e-32
Identities = 64/226 (28%), Positives = 95/226 (42%), Gaps = 40/226 (17%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKE--------EIRLRYRCLDLRRQQMNH 57
+E+ + + ++ LP L+ A ++ + + RL YR +DLR
Sbjct: 117 LEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQA 176
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LP 113
++ V +L R YL F E+ TP L + EG S V T++ L
Sbjct: 177 IFRIQAGVCELFREYLAT-KKFTEVHTPKLLGAPSEGG------SSVFEVTYFKGKAYLA 229
Query: 114 QSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF-TPLDDMLRLNE 171
QSPQ KQ L+V+ F++ Y+I FR E+ R EFT LDME+AF ++L
Sbjct: 230 QSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLS 289
Query: 172 DLIRKIF----------LEIKDVQLP---------NPFPRLTYAEA 198
+L IF +E+ Q P RLTY E
Sbjct: 290 ELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEG 335
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
+ FP+ E R PF T P+P + S +YD G EI G+ RI+
Sbjct: 375 LDKFPL------EIR------PFYTMPDPAN-PKYS----NSYDFFMRGEEILSGAQRIH 417
Query: 412 KREVQQKVLEIVGISPEQFIF 432
+ Q+ ++ G+SPE
Sbjct: 418 DHALLQERMKAHGLSPEDPGL 438
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 5e-32
Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 30/212 (14%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
+EV + V+VL+ P + + + L YR + LR ++ + ++ +
Sbjct: 75 LEVQAKEVEVLSPALEPTPVEIP---KEEWRANPDTLLEYRYVTLRGEKARAPLKVQAAL 131
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQLFKQ 121
V+ RRYL+ F EI TP + R+ EG S + ++ L QSPQL+KQ
Sbjct: 132 VRGFRRYLDR-QDFTEIFTPKVVRAGAEGG------SGLFGVDYFEKRAYLAQSPQLYKQ 184
Query: 122 MLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF-TPLDDMLRLNEDLIRKIF- 178
+ MV F++ Y++A +R E+ R E+ LD+E+ F +D++RL E L+ ++
Sbjct: 185 I-MVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLE 243
Query: 179 ---------LEIKDVQLP---NPFPRLTYAEA 198
+ + P PRLT+AEA
Sbjct: 244 EALNTAGDEIRLLGATWPSFPQDIPRLTHAEA 275
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
+T +P R PF T P + ++D+++ G+EI G RI+
Sbjct: 314 VTRYPR------SVR------PFYTYPEEDGT-------TRSFDLLFRGLEITSGGQRIH 354
Query: 412 KREVQQKVLEIVGISPEQF 430
+ E + L+ G+ PE F
Sbjct: 355 RYEELLESLKAKGMDPEAF 373
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-28
Identities = 58/189 (30%), Positives = 78/189 (41%), Gaps = 39/189 (20%)
Query: 37 VKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR 96
V ++ RL R LDLR ++ L R +L FVEI TP L + EG
Sbjct: 222 VSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTS-QKFVEIHTPKLIGCSSEGGS 280
Query: 97 -----DYLVPSRVQPGTF----YALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADR 147
Y F Y L QSPQL+KQM ++ F K +++ FR E+ R
Sbjct: 281 NIFEVKY----------FDRKAY-LAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRR 329
Query: 148 Q-PEFTQLDMELAF-TPLDDMLRLNEDLIRKIF----------LEIKDVQLPN------P 189
EF LD+E+ + + + E L IF L++ Q P P
Sbjct: 330 HLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRP 389
Query: 190 FPRLTYAEA 198
F RLTY EA
Sbjct: 390 FLRLTYKEA 398
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 18/79 (22%)
Query: 353 ITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIY 411
+ FP R PF T P+ +D + S +YD+ G EI G+ RI+
Sbjct: 438 LDKFPA------AIR------PFYTMPDIDD-PNYS----NSYDVFVRGQEITSGAQRIH 480
Query: 412 KREVQQKVLEIVGISPEQF 430
E K G+ P
Sbjct: 481 DPEFLMKRCIEKGVDPATL 499
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 28/180 (15%)
Query: 46 RCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--------EGARD 97
+++ ++++ + ++ K+++ + + GF + ++S T EG
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVK-EGFKWLLPVIISPITDPLWPDPAGEGMEP 60
Query: 98 YLVPSRVQPGTFYA----LPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ---PE 150
Y L S L KQ+ + G K + ++ R E + D E
Sbjct: 61 A-------EVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYE 113
Query: 151 FTQLDMELAFTPLDDMLRLNEDLIRKIFLEI-----KDVQLPNPFPRLTYAEAMSRYGSD 205
FTQLD E+ ++D++RL E L+ +F + ++ F Y+E + +GSD
Sbjct: 114 FTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSD 173
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 38/214 (17%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKE---EIRLRYRCLDLRRQQMNHNILLR 62
+E+ V +V+ L ++ K+ +++ R + +R + + LR
Sbjct: 109 LEMQVTEWKVIGESPIDLENIIN---------KDSSIPQKMQNRHIVIRSEHTQQVLQLR 159
Query: 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQL 118
++ R+Y D + F EI+ P + ++ EG S + ++ L QS QL
Sbjct: 160 SEIQWYFRKYYHD-NHFTEIQPPTIVKTQCEGG------STLFKLQYFNEPAYLTQSSQL 212
Query: 119 FKQMLMVSGFDKYYQIARCFRDEDLRADRQP-EFTQLDMELAFTPLDDMLRLNEDLIRKI 177
+ + +++ K + + +R E R R E+ L+ EL F +D+L EDL+ +
Sbjct: 213 YLES-VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTV 271
Query: 178 F----------LEI--KDVQLPN-PFPRLTYAEA 198
+ ++LP PF R+TYA+A
Sbjct: 272 IDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADA 305
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 4e-22
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 45/219 (20%)
Query: 6 IEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKV 65
EV VE ++V+ AV S+ P + + L YR L +R + + + ++ +
Sbjct: 88 AEVHVEKLEVIQAV-SEFPIPENPEQASPEL-----LLDYRHLHIRTPKASAIMKVKETL 141
Query: 66 VKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGT-----FYA----LPQSP 116
+ R +L G+ E+ P+L EG T ++ L QS
Sbjct: 142 IMAAREWLLK-DGWHEVFPPILVTGAVEGG-----------ATLFKLKYFDKYAYLSQSA 189
Query: 117 QLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIR 175
QL+ + + G +K + + FR E R R EF L++E A+ L D++++ E+L+
Sbjct: 190 QLYLEAAI-FGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVS 248
Query: 176 KIF----------LEIKDVQLP------NPFPRLTYAEA 198
+ +E+ L PFPR++Y EA
Sbjct: 249 YMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEA 287
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 5e-21
Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 4 GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRH 63
E+ + +++ V + + D L R L +R + + LR
Sbjct: 82 NGHELIADFWKIIGNAPPGGIDNVLNEEASVDK-----MLDNRHLVIRGENAAALLRLRA 136
Query: 64 KVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYA----LPQSPQLF 119
+ +R + + G+VE+ P L ++ EG S + ++ L QS QL+
Sbjct: 137 AATRAMREHFYN-AGYVEVAPPTLVQTQVEGG------STLFNLDYFGEQSFLTQSSQLY 189
Query: 120 KQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKI- 177
+ + + IA+ +R E R R E+ ++ E F LDD++ E+L+
Sbjct: 190 LET-CIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTV 248
Query: 178 --------------FLEIKDVQLPNPFPRLTYAEA 198
+ K PF R+ Y +A
Sbjct: 249 DRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDA 283
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 5e-20
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 50/194 (25%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E R R R LDL MN + R +++ +RRYL+ HG++E+ETP++ + GA
Sbjct: 154 EQRYRQRYLDL---IMNPESKKTFITRSLIIQSMRRYLDS-HGYLEVETPMMH-AVAGGA 208
Query: 96 -------------RD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
Y+ R+ + +L + L+V G +K Y+I R FR+E
Sbjct: 209 AARPFITHHNALDMTLYM---RI----------AIELHLKRLIVGGLEKVYEIGRVFRNE 255
Query: 142 DLRADRQPEFTQLDMEL--AFTPLDDMLRLNEDLIRKIFLEI----------KDVQLPNP 189
+ PEFT +EL A+ D+++L E+LI I E+ V L
Sbjct: 256 GISTRHNPEFTM--LELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPE 313
Query: 190 FPRLTYAEAMSRYG 203
+ RL +A+ Y
Sbjct: 314 WRRLHMVDAIKEYV 327
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 6e-20
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 50/196 (25%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E+R R R LDL N ++R K++ IR+++ GF+E+ETP++ P GA
Sbjct: 163 EVRYRQRYLDL---IANDKSRQTFVVRSKILAAIRQFMVA-RGFMEVETPMMQ-VIPGGA 217
Query: 96 -------------RD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
D YL R+ +P+L+ + L+V GF++ ++I R FR+E
Sbjct: 218 SARPFITHHNALDLDMYL---RI----------APELYLKRLVVGGFERVFEINRNFRNE 264
Query: 142 DLRADRQPEFTQLDMEL--AFTPLDDMLRLNEDLIRKIFLEI----------KDVQLPNP 189
+ PEFT MEL A+ D++ L E L R + E+ P
Sbjct: 265 GISVRHNPEFTM--MELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKP 322
Query: 190 FPRLTYAEAMSRYGSD 205
F +LT EA+ +Y +
Sbjct: 323 FEKLTMREAIKKYRPE 338
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQ-PGTFYALPQ-- 114
N+L R ++ IRR+ D G +E+ETP +S++T +LVP + G ++
Sbjct: 35 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDI--HLVPFETRFVGPGHSQGMNL 91
Query: 115 ----SPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ--PEFTQLDMEL--AFTPLDDM 166
SP+ + L+V+G +Q+ R FR+E++ R PEFT +E + +
Sbjct: 92 WLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEM--GRYHNPEFTM--LEWYRPHYDMYRL 147
Query: 167 LRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY 202
+ +DL++++ L+ L+Y +A RY
Sbjct: 148 MNEVDDLLQQV-LDC------PAAESLSYQQAFLRY 176
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-19
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 54/195 (27%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E R R R +DL + R K + IR+++ D F+E+ETP+L P GA
Sbjct: 184 ETRYRQRYVDL---IVTPETRTTFRARTKAIASIRKFMGD-ADFMEVETPMLH-PIPGGA 238
Query: 96 -------------RD-YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
+ +L R+ +P+L+ + L+V GF++ ++I R FR+E
Sbjct: 239 AAKPFVTHHNALDMEMFL---RI----------APELYLKRLIVGGFERVFEINRNFRNE 285
Query: 142 DLRADRQ--PEFTQLDMEL--AFTPLDDMLRLNEDLIRKIFLEI----------KDVQLP 187
+ + PEFT ME A+T ++ E LIR+ ++ +++ L
Sbjct: 286 GV--SPRHNPEFTM--MEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLA 341
Query: 188 NPFPRLTYAEAMSRY 202
PF RLT +A+ +Y
Sbjct: 342 QPFHRLTITQAIQKY 356
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 2e-18
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 61/203 (30%)
Query: 40 EIRLRYRCLDLRRQQMNHNI----LLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA 95
E R R R LDL +N + ++R K++ IR +L++ GF+EIETP+++ P GA
Sbjct: 156 ETRYRQRYLDL---ILNDFVRQKFIIRSKIITYIRSFLDE-LGFLEIETPMMN-IIPGGA 210
Query: 96 R-----------D---YLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
D Y+ R+ +P+L+ +ML+V G D+ Y+I R FR+E
Sbjct: 211 VAKPFITYHNELDMNLYM---RI----------APELYHKMLVVGGIDRVYEIGRQFRNE 257
Query: 142 DLRADRQ--PEFTQLDMEL--AFTPLDDMLRLNEDLIRKIFLEI---------------- 181
+ D PEFT E A+ D++ + E ++ + I
Sbjct: 258 GI--DLTHNPEFTT--CEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQ 313
Query: 182 -KDVQLPNPFPRLTYAEAMSRYG 203
DV PF R+ E + +
Sbjct: 314 AYDVDFTPPFRRINMVEELEKAL 336
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 7e-08
Identities = 56/373 (15%), Positives = 101/373 (27%), Gaps = 146/373 (39%)
Query: 10 VEHVQVLNA--VRSKLPFLVTTAD----DA---------------KDFVKEEIR------ 42
V++ + NA + K+ L+TT D +E++
Sbjct: 253 VQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 43 LRYRCLDLRRQQMNHNILL------------------RH----KVVKLI----------- 69
L R DL R+ + N +H K+ +I
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 70 -RRYLEDVHGF---VEIETPVLSR----STPEGARDY--------LVPSRVQPGTFY--- 110
R+ + + F I T +LS LV + + T
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 111 -------ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDL-------------------- 143
L L + ++ +Y I + F +DL
Sbjct: 431 IYLELKVKLENEYALHRSIV------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 144 -RADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRL-TYAEAMSR 201
+R F + ++ F L + + + N +L Y
Sbjct: 485 EHPERMTLFRMVFLDFRF--------LEQKIRHDSTAWNASGSILNTLQQLKFY----KP 532
Query: 202 YGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTAL--KK 259
Y D D ++ +N + D FL S K ++++ AL +
Sbjct: 533 YICDN-DPKYERLVNAILD-FLPKIEENLICS-KYTDLLRI-------------ALMAED 576
Query: 260 GDIYNEAIKSGAK 272
I+ EA K +
Sbjct: 577 EAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 59/411 (14%), Positives = 106/411 (25%), Gaps = 143/411 (34%)
Query: 25 FLVTTADDAKDFVKEEIRLRYR--CLDLRRQQMNHNILL------------RHKVVKLIR 70
F+ F+ I+ R + R + L R + +R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 71 RYLED--------VHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQM 122
+ L + + G + + + Y V ++ F+
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIFWL----------- 187
Query: 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF-TPLDDMLRLNEDLIRKIFLEI 181
+ C E + L+M +D D I L I
Sbjct: 188 ----------NLKNCNSPETV----------LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 182 KDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIK 241
+Q + R +P L L +V + + F +L K
Sbjct: 228 HSIQ-----------AELRRLLKSKPYENCLLVLLNVQN---AKAWNAF--NLSC----K 267
Query: 242 VLCVPSGAKTYSN--TALKKGDIYNEAIKSG-----AKGLPFLKVLDAG-------GVEG 287
+L + + K ++ +A I + K L LK LD +
Sbjct: 268 IL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTT 325
Query: 288 IPALVSSLGPS--------------NKEQL--LIRCSA---GPS-------DLILFAVGH 321
P +S + S N ++L +I S P+ L +F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---- 381
Query: 322 PASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALH 372
P S + L S++W +D + LH
Sbjct: 382 PPSAHIPTILL----------------SLIWFDV----IKSDVMVVVNKLH 412
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 56/449 (12%), Positives = 120/449 (26%), Gaps = 126/449 (28%)
Query: 49 DLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGT 108
+ Q + +L + + D ++ +LS+ E + V GT
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKE--EIDHIIMSKDAVS-GT 64
Query: 109 ---FYALPQSPQLFKQMLMVSGFDKYYQ-IARCFRDEDLRADRQPEFTQLDMELAFTPLD 164
F+ L + Q + Y+ + + E RQP + + D
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ----RQPS---MMTRMYIEQRD 117
Query: 165 DMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLE 224
+ N+ + K V P+ +L +A+ L+L ++ ++
Sbjct: 118 RLYNDNQ-VFAKYN-----VSRLQPYLKLR--QAL-------------LELRPAKNVLID 156
Query: 225 SPFRVFSDSLKSGGIIK-VLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKV--LD 281
G K + + ++ + F K+ L+
Sbjct: 157 GV----------LGSGKTWVA----LDVCLSYKVQCK-------------MDF-KIFWLN 188
Query: 282 AGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVA---H 338
++ L ++LL + + + ++ LR + +
Sbjct: 189 LKNCNSPETVLEML-----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 339 ELGLI--DNSKHSILW-----------------ITDFPMFEWNDSEQRLEALHHPFTAPN 379
E L+ N +++ W +TDF + + L+ T
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDE 302
Query: 380 PEDM---------DDL-SSARA---LAYDMVYNGVEIGGGSLRI--YKREVQQKVLEIVG 424
+ + DL ++ I G +K K+ I+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 425 ISPEQ-------------FIFAEVVAIPA 440
S +F IP
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 8e-08
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 20/158 (12%)
Query: 62 RHKVVKLIRRYLEDVHGFVEIETPVL------SRSTPEGARDYLVPSRVQPGTFYAL--- 112
K+ + I R+ D GF+EI++P+L R + L + + L
Sbjct: 79 LGKLEREITRFFVD-RGFLEIKSPILIPLEYIERMGIDN-DTELSKQIFRVDKNFCLRPM 136
Query: 113 ---PQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL--AFTPLDDML 167
L K + K ++I C+R E + EFT L + +++
Sbjct: 137 LTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLE 196
Query: 168 RLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSD 205
+ D + + ++ K V + + + + D
Sbjct: 197 SIITDFLNHLGIDFKIV-GDSCMV---FGDTLDVMHGD 230
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 43 LRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETP-VLSRSTPE----GARD 97
+ L + + + ++ + + + L GFV++ TP ++++S G
Sbjct: 54 MSQGKRHLEQLRTVKHRPALLELEEKLAKALHQ-QGFVQVVTPTIITKSALAKMTIGEDH 112
Query: 98 YLVPSRVQPGTFYAL-----PQSPQLFKQMLMVSGFD---KYYQIARCFRDEDLRADRQP 149
L L P L++++ +D + ++I C+R E A
Sbjct: 113 PLFSQVFWLDGKKCLRPMLAPNLYTLWRELE--RLWDKPIRIFEIGTCYRKESQGAQHLN 170
Query: 150 EFTQLDMELAFTPLDDMLRLNEDLIRKIF--LEIKDVQL 186
EFT L++ TPL++ + ED+ R + I++ +L
Sbjct: 171 EFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFEL 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.89 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.33 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 98.98 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 98.94 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 98.7 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.52 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.51 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 98.5 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.39 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 98.35 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 98.3 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 98.29 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 98.28 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 98.27 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.26 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 98.26 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 98.25 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.25 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 98.22 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 98.2 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 98.2 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 98.16 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 98.16 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.13 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 98.12 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 98.12 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 98.11 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.06 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 98.05 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 98.0 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.98 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 97.97 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.95 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.95 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.92 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.91 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.89 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.89 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.88 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.85 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.73 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 97.69 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 97.46 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.36 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.34 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.33 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.3 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 97.28 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.26 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.18 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 97.11 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.7 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 96.56 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 96.32 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 96.17 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 95.55 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 95.14 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 94.56 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 83.04 |
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-116 Score=947.95 Aligned_cols=431 Identities=41% Similarity=0.695 Sum_probs=396.2
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHh-hcCCe
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLE-DVHGF 79 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~-~~~gF 79 (452)
++||++||.|++|+|||+|. ++|+++++.. ..++++|++|||||||++.++++|++||++++++|+||. + +||
T Consensus 95 ~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~----~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~-~gF 168 (617)
T 4ah6_A 95 MPTGEIEIKVKTAELLNACK-KLPFEIKNFV----KKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNL-HGF 168 (617)
T ss_dssp STTTTEEEEEEEEEEEECBC-CCSSCTTTTC----CSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTT-SCC
T ss_pred CCCCcEEEEEeEEEEeecCC-CCCccccccc----ccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhc-CCe
Confidence 36899999999999999996 8999876432 467999999999999999999999999999999999996 6 999
Q ss_pred EEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 80 VEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 80 ~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
+||+||+|++++|+||++|.+|++ .+|++|||+||||+|||+||++|++||||||||||||+++++|+||||||||||+
T Consensus 169 ~EVeTPiL~~st~~GA~~F~v~~~-~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~a 247 (617)
T 4ah6_A 169 VDIETPTLFKRTPGGAKEFLVPSR-EPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMS 247 (617)
T ss_dssp EECCCCSSBCCCCSSSCCCEEECS-STTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEE
T ss_pred EEEeCCeeccCCCCCCcCceeccc-cCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeec
Confidence 999999999999999999999987 5789999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCcccccccccc-CCC
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLK-SGG 238 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~-~~~ 238 (452)
|++++|+|+++|+|++++++.+. .+++.||+||||+|||++||+||||+||++++.|+++++.+++|++|...++ +++
T Consensus 248 f~d~~d~m~~~E~l~~~~~~~~~-~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g 326 (617)
T 4ah6_A 248 FVDQTGIQSLIEGLLQYSWPNDK-DPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHG 326 (617)
T ss_dssp SCCHHHHHHHHHHHHHHHSCSSS-CCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc-CccCCCceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcCCC
Confidence 99999999999999999997654 3677899999999999999999999999999999999999999999998776 578
Q ss_pred eEEEEEccCCCcccchhhhccCcchHHHHH-cCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEE
Q 043787 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIK-SGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILF 317 (452)
Q Consensus 239 ~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~-~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~ 317 (452)
.|+++++|++++.+||++++ ++.++++. +|++|++|+++ +++.+ .||+.|+|++++.++|.+++++++||+|||
T Consensus 327 ~VkAI~vpg~a~~lsRK~id--~L~e~ak~~~g~ggl~~~~~-~d~~~--~~~I~Kflsee~~~~L~e~l~a~~GDlIff 401 (617)
T 4ah6_A 327 TVKAICIPEGAKYLKRKDIE--SIRNFAADHFNQEILPVFLN-ANRNW--NSPVANFIMESQRLELIRLMETQEEDVVLL 401 (617)
T ss_dssp EEEEEEEESCTTTSCTTTHH--HHHHHHHHSSCCCEEEECSS-TTTTS--SCTTHHHHHHHHHHHHHHHHTCCSSEEEEE
T ss_pred eEEEEEcCCCccccchhhHH--HHHHHHHHhcCCceEEEEEe-cCCcc--ccchhhhcCHHHHHHHHHHhCCCCCCEEEE
Confidence 99999999977668998875 35678888 78777666654 44433 789999999999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHHHHcC-----CCCCCCccEEEEeccCCCc-cCcccccccccccCcCCCCCCCcc----Chh
Q 043787 318 AVGHPASVNKTLDRLRTFVAHELG-----LIDNSKHSILWITDFPMFE-WNDSEQRLEALHHPFTAPNPEDMD----DLS 387 (452)
Q Consensus 318 ~a~~~~~~~~~LG~lR~~l~~~l~-----l~~~~~~~flWV~dFPlfe-~~e~~~r~~a~HHPFT~P~~ed~~----~~~ 387 (452)
+||+...++++||+||+++++.++ |++++.|+|+||||||||| +++++|||.|+|||||||+++|++ +|.
T Consensus 402 ~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~ 481 (617)
T 4ah6_A 402 TAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPK 481 (617)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTT
T ss_pred ecCChHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChh
Confidence 999999999999999999999983 8999999999999999995 457789999999999999999987 788
Q ss_pred hhhhceeeeeecCeEeeccccccccHHHHHHHHH-HcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 388 SARALAYDMVYNGVEIGGGSLRIYKREVQQKVLE-IVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 388 ~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~-~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+|+|++||||+||+|||||||||||+++|+++|+ .+|++++ +|++||+||+|| ||||
T Consensus 482 ~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~----~~~~~l~a~~~G---~pph 539 (617)
T 4ah6_A 482 KARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVK----MLSHLLQALDYG---APPH 539 (617)
T ss_dssp SSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHH----HHHHHHHHHTBT---CCCE
T ss_pred hhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchh----hHHHHHHHHHcC---CCCC
Confidence 9999999999999999999999999999999998 9999864 566699999999 9999
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-105 Score=858.79 Aligned_cols=432 Identities=47% Similarity=0.830 Sum_probs=396.8
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCccccccc--ccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTAD--DAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHG 78 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~--~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~g 78 (452)
++||++||.|++++|||+|. ++||.+.+.. ..+..+++++|++|||||||++.++++|++||++++++|+||.+ +|
T Consensus 85 ~~~ge~Ei~~~~i~vl~~a~-~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~fl~~-~g 162 (580)
T 1l0w_A 85 LATGRVEVELSALEVLAEAK-TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDR-EG 162 (580)
T ss_dssp STTTTEEEEEEEEEEEECCC-CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CCCccEEEEEeEEEEeccCc-CCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 46899999999999999986 6788775410 00125789999999999999999999999999999999999998 99
Q ss_pred eEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 79 FVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 79 F~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
|+||+||+|++++||||++|.||++..++++|||+||||||||+||++|++||||||||||||+++++||||||||||||
T Consensus 163 F~EVeTPiL~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~ 242 (580)
T 1l0w_A 163 FVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEM 242 (580)
T ss_dssp CEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEE
T ss_pred cEEEeCCEEecCCCCCCCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeee
Confidence 99999999999999999999999987788999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCC
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGG 238 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~ 238 (452)
+|++++|+|+++|+||+++++++++++++.||+||||.|||++||+||||+|+++++.++++++.++.|.+|...+
T Consensus 243 af~d~~dvm~~~E~li~~i~~~v~~~~~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~---- 318 (580)
T 1l0w_A 243 SFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAE---- 318 (580)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSS----
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccc----
Confidence 9999999999999999999999999889899999999999999999999999999999999999888888876543
Q ss_pred eEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEE
Q 043787 239 IIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFA 318 (452)
Q Consensus 239 ~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~ 318 (452)
.|.++++|+ .++++.++ .+.+.++++|++|++|+++.+++ + .+++.|++++ +..+|.++++++.||+++++
T Consensus 319 ~v~~i~~~~---~~~r~~~~--~l~~~~~~~g~~~~~~~~~~~~~-~--~~~~~k~l~~-~~~~l~~~~~~~~gd~~~~~ 389 (580)
T 1l0w_A 319 SVKALALPK---ALSRKEVA--ELEEVAKRHKAQGLAWARVEEGG-F--SGGVAKFLEP-VREALLQATEARPGDTLLFV 389 (580)
T ss_dssp EEEEEEESS---CCCHHHHH--HHHHHHHHTSCSCCEEEEEETTE-E--ESTTHHHHGG-GHHHHHHHHCCCTTCEEEEE
T ss_pred eeEEEeccC---ccCHHHHH--HHHHHHHHcCCCcceEEEecCcc-c--cchhhhhhhH-HHHHHHHHhCCCcCceEEEe
Confidence 688999997 48887765 35567888999999999987653 3 3677888887 77889999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----Chhhhhhcee
Q 043787 319 VGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSARALAY 394 (452)
Q Consensus 319 a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~a~~Y 394 (452)
++....+++.||+||.++++.++|+++ .++|+||||||+|+++++++||.|+|||||||+++|++ +|.++++++|
T Consensus 390 ~~~~~~~~~~Lg~lr~~l~~~~~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~f 468 (580)
T 1l0w_A 390 AGPRKVAATALGAVRLRAADLLGLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAY 468 (580)
T ss_dssp EESHHHHHHHHHHHHHHHHHHTTCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEE
T ss_pred cCccchhhhhHHHHHHHHHHHhccccc-ccCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEE
Confidence 999989999999999999999999987 88999999999999999999999999999999998875 4556789999
Q ss_pred eeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 395 DMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 395 DLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
|||+||+||||||+||||+++|+++|+.+|+++++++.+|++||+||+|| ||||
T Consensus 469 DL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG---~PPh 522 (580)
T 1l0w_A 469 DLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYG---APPH 522 (580)
T ss_dssp EEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBT---CCCE
T ss_pred EEEeCCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcC---CCCC
Confidence 99999999999999999999999999999999999998999999999999 9999
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-104 Score=852.16 Aligned_cols=432 Identities=46% Similarity=0.772 Sum_probs=401.2
Q ss_pred CCCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 1 MKTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 1 ~~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++||++||.|++++|||+|. ++|+++.+ .+++++|++|||||||++.++++|++||++++++|+||.+ +||+
T Consensus 87 ~~~geiEl~~~~i~vl~~a~-~lP~~~~~------~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~-~gFl 158 (585)
T 1c0a_A 87 MATGEIEVLASSLTIINRAD-VLPLDSNH------VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDD-HGFL 158 (585)
T ss_dssp STTTTEEEEEEEEEEEECCC-SCSSCTTS------CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCccEEEEEeEEEEEeccC-CCCCCccc------cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHh-CCcE
Confidence 46899999999999999985 78887753 4789999999999999999999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 160 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f 160 (452)
||+||+|++++||||++|.||++..++++|||+||||||||+||++|++||||||||||||+++++|||||||||+||+|
T Consensus 159 EVeTPiL~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af 238 (585)
T 1c0a_A 159 DIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSF 238 (585)
T ss_dssp ECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEES
T ss_pred EEeCCEEecCCCCCCccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecC
Confidence 99999999999999999999998778899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccC-CCe
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKS-GGI 239 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~-~~~ 239 (452)
++++|+|+++|+||+++++.+++.+++. |+||||.|||++||+|+||+|+++++.++++.+.+++|.+|...++. ++.
T Consensus 239 ~d~~dvm~~~E~li~~i~~~v~~~~~~~-f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~ 317 (585)
T 1c0a_A 239 MTAPQVREVMEALVRHLWLEVKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGR 317 (585)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCCCCS-CCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCccc-cceeeHHHHHHHhcCCCccccCCceeEEehhhhccCCcceehhhhhccCce
Confidence 9999999999999999999998887766 99999999999999999999999999999999999999999877764 678
Q ss_pred EEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEec-----CCCccccccccccCChhhHHHHHHHhCCCCCcE
Q 043787 240 IKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLD-----AGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDL 314 (452)
Q Consensus 240 v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~ 314 (452)
+.++++|... +++++.++ ++.+.++++|++|++|+++.+ ++ + .+++.|++++++..+|.+.++++.||+
T Consensus 318 ~~~i~~~~~~-~~~r~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~-~--~~~~~k~l~~~~~~~l~~~~~~~~~d~ 391 (585)
T 1c0a_A 318 VAALRVPGGA-SLTRKQID--EYGNFVKIYGAKGLAYIKVNERAKGLEG-I--NSPVAKFLNAEIIEDILDRTAAQDGDM 391 (585)
T ss_dssp EEEEEETTGG-GCCHHHHH--HHHHHHHHTTCSCCCEEEESCGGGGGGG-E--ECTTGGGSCHHHHHHHHHHTTCCTTCE
T ss_pred EEEEEccccC-ccCHhhHH--HHHHHHHHcCCCCceeEEeccccccccc-c--cchhhhhcCHHHHHHHHHHhCCCcCcE
Confidence 9999999764 58887765 355678889999999999866 33 3 478899999999999999999999999
Q ss_pred EEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----Chhhhh
Q 043787 315 ILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSAR 390 (452)
Q Consensus 315 ~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~ 390 (452)
++++++....+++.||+||.++++.++|++++.++|+||||||+|+ ++++++|.|+|||||||+++|++ +|.+++
T Consensus 392 ~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~-~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~ 470 (585)
T 1c0a_A 392 IFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAV 470 (585)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEE-ECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCB
T ss_pred EEEecCcccchhhhhHHHHHHHHHHhCcccccccccEEEEeCCccc-cccccccccccCCccCCCchhhhhhccCCccee
Confidence 9999999889999999999999999999988889999999999999 88899999999999999998764 455677
Q ss_pred hceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 391 ALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 391 a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+++||||+||+||||||+||||+++|+++|+.+|+++++++.+|++||+||+|| ||||
T Consensus 471 a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG---~PPh 528 (585)
T 1c0a_A 471 ANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYG---TPPH 528 (585)
T ss_dssp BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTT---CCCE
T ss_pred eeEEEEEECCEEEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcC---CCCc
Confidence 999999999999999999999999999999999999999998899999999999 9999
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-68 Score=563.61 Aligned_cols=324 Identities=26% Similarity=0.452 Sum_probs=255.5
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+||++||.|++++|||+|..++|.... ...++++|+++|||||| ++.+++++++||+|++++|+||.+ +||+
T Consensus 131 ~~ge~ei~~~~i~vl~~a~~plP~k~~------~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~-~gFl 203 (504)
T 1e1o_A 131 QTGELSIHCTELRLLTKALRPLPDKFH------GLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFM 203 (504)
T ss_dssp TTCCEEEEEEEEEEEECCSSCCCC-------------TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-TTCE
T ss_pred CCceEEEEEEEEEEecccCCCCCcccc------CCcChhhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 579999999999999999667774321 23568999999999996 899999999999999999999988 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|++ +++|| ++|.++++. .+..+||+||||||+|+||++|++||||||||||||+++++|+|||||||+||
T Consensus 204 EVeTPiL~~-~~~Ga~ar~F~t~~~~-~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~ 281 (504)
T 1e1o_A 204 EVETPMMQV-IPGGASARPFITHHNA-LDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYM 281 (504)
T ss_dssp ECCCCSEES-SCCSSCCCCCEEEETT-TTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEE
T ss_pred EEECCeEEe-cCCCCcccceEeccCC-CCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeee
Confidence 999999995 56664 678887553 47888999999999999999999999999999999999998889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||+++++.+++ +++..||+||||.|||++|++| .|+ .++-
T Consensus 282 af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~~~~pf~rity~eAi~~~~~d-~d~---------~~~~------ 345 (504)
T 1e1o_A 282 AYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-TDM---------ADLD------ 345 (504)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETTSCCEEEEHHHHHHHHSTT-CCG---------GGGG------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeeccCCCceEEeHHHHHHHHcCC-CCc---------cccC------
Confidence 9999999999999999999999876 4567899999999999999874 111 0000
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
+.. .+.+.+++.|.+ + +.
T Consensus 346 ------------------------~~~-----~~~~~~~~~g~~------~-~~-------------------------- 363 (504)
T 1e1o_A 346 ------------------------NFD-----AAKALAESIGIT------V-EK-------------------------- 363 (504)
T ss_dssp ------------------------SHH-----HHHHHHHHTTCC------C-CT--------------------------
T ss_pred ------------------------CHH-----HHHHHHHHcCCC------C-CC--------------------------
Confidence 000 011223333321 0 00
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
+ ..+|+|+..+.+.+ +++.-+.|+||+|||++ .||||||+++|..
T Consensus 364 ---~--------------~~~g~l~~~~~~~~--ve~~~~~p~fV~dyP~~------------~~pf~~~~~~dp~---- 408 (504)
T 1e1o_A 364 ---S--------------WGLGRIVTEIFDEV--AEAHLIQPTFITEYPAE------------VSPLARRNDVNPE---- 408 (504)
T ss_dssp ---T--------------CCHHHHHHHHHHHH--TGGGCCSCEEEECCBGG------------GCTTBCBCSSCTT----
T ss_pred ---C--------------cCHhHHHHHHHHHH--hhccCCCeEEEECCCcc------------cCcCcCCCCCCCC----
Confidence 0 12566676666653 34445679999999986 5999999987754
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHHHc----CCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV----GISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l----g~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||++||+||+|||+||||++.|++.|+.. +...++....+.+||+||+|| ||||
T Consensus 409 -~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG---~PPh 471 (504)
T 1e1o_A 409 -ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYG---LPPT 471 (504)
T ss_dssp -BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHH---CCSE
T ss_pred -ceEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcC---CCCc
Confidence 6899999999999999999999999999999764 222223222234499999999 9999
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-67 Score=552.50 Aligned_cols=323 Identities=24% Similarity=0.366 Sum_probs=255.8
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+||++||.|++++|||+|..++|.... ...++++|+++|||||| ++.+++++++||++++++|+||.+ +||+
T Consensus 122 ~~ge~ei~~~~i~vl~~~~~plP~k~~------~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~-~gF~ 194 (493)
T 3a74_A 122 KVGELSIKVSSYEFLTKALRPLPEKYH------GLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDS-HGYL 194 (493)
T ss_dssp TTCCEEEEEEEEEEEECCSSCCCCC-----------CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCcEEEEEEEEEEcccccCCCCcccc------CCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHh-CCeE
Confidence 579999999999999999667774321 23578999999999996 899999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++|+ +.|.++++. .+..+||+||||+|+|+||++|++||||||||||||+++++|+|||||||+||
T Consensus 195 EVeTPiL~~~-~~Ga~a~~F~~~~~~-~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~ 272 (493)
T 3a74_A 195 EVETPMMHAV-AGGAAARPFITHHNA-LDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYE 272 (493)
T ss_dssp ECCCCSEESS-CCSSSSCCCEEEETT-TTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEE
T ss_pred EEECCeEEec-CCCCcccceEecccC-CCceeEEecCHHHHHHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEe
Confidence 9999999965 5554 567776442 47788999999999999999999999999999999999998889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||+++++.+++ +++..||+||||.|||++|++.... .+
T Consensus 273 af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~~pf~rity~eai~~~~~~d~~----------~~-------- 334 (493)
T 3a74_A 273 AYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFW----------RQ-------- 334 (493)
T ss_dssp ETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECCSSCEEEEHHHHHHHHTCCCTT----------SC--------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeeccCCCcceeeHHHHHHHHhCCCCc----------cc--------
Confidence 9999999999999999999999876 4567899999999999999752110 00
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
++.. +..+.+++.|.+ + +.
T Consensus 335 -----------------------~~~~-----~~~~~~~~~g~~------~-~~-------------------------- 353 (493)
T 3a74_A 335 -----------------------MSDE-----EARELAKEHGVE------V-AP-------------------------- 353 (493)
T ss_dssp -----------------------CCHH-----HHHHHHHHTTCC------C-CT--------------------------
T ss_pred -----------------------cCHH-----HHHHHHHHcCCC------C-CC--------------------------
Confidence 0000 012233333322 0 00
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
...+|+++..+.+.+ +++.-+.|+||+|||++ .||||||+++|..
T Consensus 354 -----------------~~~~g~l~~~~~~~~--ve~~~~~p~fv~dyP~~------------~~pf~~~~~~dp~---- 398 (493)
T 3a74_A 354 -----------------HMTFGHIVNEFFEQK--VEDKLIQPTFIYGHPVE------------ISPLAKKNPDDPR---- 398 (493)
T ss_dssp -----------------TCCHHHHHHHHHHHH--TGGGCCSCEEEECCBGG------------GCTTBCBCSSCTT----
T ss_pred -----------------CcChhHHHHHHHHHH--hhcccCCcEEEECCCcc------------cCCccCcCCCCCC----
Confidence 012566676666653 34444679999999986 5999999987754
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHHHc----CCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV----GISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l----g~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||++||+||+|||+||||++.|++.|+.. +...++....+.+||+||+|| ||||
T Consensus 399 -~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG---~PPh 461 (493)
T 3a74_A 399 -FTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYG---MPPT 461 (493)
T ss_dssp -BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTC---CCSE
T ss_pred -eEEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCC---CCCc
Confidence 6899999999999999999999999999999653 222222222223499999999 9999
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-66 Score=547.24 Aligned_cols=307 Identities=30% Similarity=0.466 Sum_probs=250.7
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccc--------cCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHH
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADD--------AKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYL 73 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~--------~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff 73 (452)
+||++||.|++++|||+|..++|+++++..+ ....+++++|++|||||||++.+++++++||++++++|+||
T Consensus 113 ~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~ 192 (487)
T 1eov_A 113 TVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYL 192 (487)
T ss_dssp SEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999997789998754310 01137899999999999999999999999999999999999
Q ss_pred hhcCCeEEEcCceEeecCCC-CCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cce
Q 043787 74 EDVHGFVEIETPVLSRSTPE-GARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEF 151 (452)
Q Consensus 74 ~~~~gF~EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EF 151 (452)
.+ +||+||+||+|+++.++ ||+.|.+++ .|+.+||+||||+|+|+||++|++||||||||||+|+++++|| |||
T Consensus 193 ~~-~gF~EV~TPil~~~~~~~ga~~f~~~~---~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEF 268 (487)
T 1eov_A 193 AT-KKFTEVHTPKLLGAPSEGGSSVFEVTY---FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEF 268 (487)
T ss_dssp HH-TTCEECCCCSEESSCSSSSSCCCEEEE---TTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEE
T ss_pred Hh-CCcEEEeCCEEEEecCCCCcccceecc---CCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhh
Confidence 98 99999999999998666 566777774 4788999999999999999999999999999999999999999 799
Q ss_pred eeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcC-----------------CCCCC--CCceeeHHHHHHHhCCCCCCCcc
Q 043787 152 TQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKD-----------------VQLPN--PFPRLTYAEAMSRYGSDRPDTRF 211 (452)
Q Consensus 152 tqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~--pf~rity~eA~~~~g~dkpd~r~ 211 (452)
||||+||+|. +++++|+++|+|++++++.+++ .++.. ||+|+||.||++.+.
T Consensus 269 t~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~-------- 340 (487)
T 1eov_A 269 TGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLR-------- 340 (487)
T ss_dssp EEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHH--------
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHH--------
Confidence 9999999997 6999999999999999987642 01111 566666666654321
Q ss_pred cccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccc
Q 043787 212 SLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPAL 291 (452)
Q Consensus 212 ~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 291 (452)
T Consensus 341 -------------------------------------------------------------------------------- 340 (487)
T 1eov_A 341 -------------------------------------------------------------------------------- 340 (487)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCccccccccc
Q 043787 292 VSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEAL 371 (452)
Q Consensus 292 ~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~ 371 (452)
..+++.+|. .+........||+++.. .++ ..|+||+|||+.
T Consensus 341 --------------~~g~~~~~~----~d~~~~~e~~l~~~~~~---~~~------~~~~~v~dyP~~------------ 381 (487)
T 1eov_A 341 --------------AAGKEIGDF----EDLSTENEKFLGKLVRD---KYD------TDFYILDKFPLE------------ 381 (487)
T ss_dssp --------------HTTCCCCTT----CCCCHHHHHHHHHHHHH---HSC------CSEEEEECCBGG------------
T ss_pred --------------HhCCCCCcc----cchhhHHHHHHHHHHHH---HhC------CCCEEEECCccc------------
Confidence 011110000 00111234567777643 344 469999999984
Q ss_pred ccCc-CCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHH--HHhhhhhhhhhhhhcCCCCC
Q 043787 372 HHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPE--QFIFAEVVAIPALSSGDFNC 448 (452)
Q Consensus 372 HHPF-T~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~--~~~~~f~~~l~a~~~G~~~~ 448 (452)
|||| |||+++|.. .+.+||||+||.||+|||+||||++.|++.|+.+|++++ ..+| ||+||+|| |
T Consensus 382 ~~pfy~~~~~~dp~-----~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~----yl~al~yG---~ 449 (487)
T 1eov_A 382 IRPFYTMPDPANPK-----YSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKD----YCDGFSYG---C 449 (487)
T ss_dssp GSCTTBCBCSSCTT-----BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHH----HHHHHTTC---C
T ss_pred cChhhcCcCCCCCC-----eEEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHH----HHHHHhcC---C
Confidence 9998 899988753 699999999999999999999999999999999999998 6666 99999999 9
Q ss_pred CCC
Q 043787 449 QPQ 451 (452)
Q Consensus 449 ~p~ 451 (452)
|||
T Consensus 450 PPh 452 (487)
T 1eov_A 450 PPH 452 (487)
T ss_dssp CCE
T ss_pred CCC
Confidence 999
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-66 Score=544.81 Aligned_cols=301 Identities=22% Similarity=0.353 Sum_probs=240.6
Q ss_pred CCCceEEEEeEEEEEecCCC--CCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 043787 2 KTGFIEVAVEHVQVLNAVRS--KLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGF 79 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~--~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF 79 (452)
+||++||.|++++|||++.+ .+|++.+ .+++++|+++||||||++.+++++++||++++++|+||.+ +||
T Consensus 80 ~~g~~El~~~~~~vl~~~~p~~~~pl~~~-------~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~-~gF 151 (435)
T 2xgt_A 80 APNGHELIADFWKIIGNAPPGGIDNVLNE-------EASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYN-AGY 151 (435)
T ss_dssp --TTEEEEEEEEEEEECCCTTHHHHHCC---------CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred CCCcEEEEEEEEEEeecCCCccccccccc-------CCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 57999999999999998532 1343322 4789999999999999999999999999999999999988 999
Q ss_pred EEEcCceEeecCCCCCc-cceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeee
Q 043787 80 VEIETPVLSRSTPEGAR-DYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDME 157 (452)
Q Consensus 80 ~EV~TPiL~~~~~eGa~-~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e 157 (452)
+||+||+|+++++|||. .|.++. .|+++||+||||||||++|+ |++||||||||||||+++++|| |||||||||
T Consensus 152 lEVeTPiL~~s~~eG~~~~F~~~~---~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e 227 (435)
T 2xgt_A 152 VEVAPPTLVQTQVEGGSTLFNLDY---FGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAE 227 (435)
T ss_dssp EECCCCSEESCCSSCTTSCCEEEE---TTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEE
T ss_pred EEEECCeEeeccCCCchhceeecc---CCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEE
Confidence 99999999999999885 455553 47889999999999999885 7999999999999999999888 699999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHhcC------------CCC---CCCCceeeHHHHHHHhCCCCCCCccccccccccccc
Q 043787 158 LAFTPLDDMLRLNEDLIRKIFLEIKD------------VQL---PNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIF 222 (452)
Q Consensus 158 ~~f~~~~dlm~~~E~li~~i~~~~~~------------~~l---~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~ 222 (452)
|+|+|++|+|+++|+|++++++.+++ +++ ..||+||||.||++.+.....+ .
T Consensus 228 ~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~~~------~------- 294 (435)
T 2xgt_A 228 CPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVE------N------- 294 (435)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTTCB------C-------
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcCCC------c-------
Confidence 99999999999999999999987753 232 2699999999999986422100 0
Q ss_pred ccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHH
Q 043787 223 LESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQ 302 (452)
Q Consensus 223 ~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~ 302 (452)
+.+ .++ .+...++++..
T Consensus 295 ------------~~~------------~~~-------------------------------------~~g~~l~~~~e-- 311 (435)
T 2xgt_A 295 ------------EFG------------NTF-------------------------------------TYGEDIAEAAE-- 311 (435)
T ss_dssp ------------TTS------------CBC-------------------------------------CTTSCCCHHHH--
T ss_pred ------------ccc------------ccc-------------------------------------chhhHHHHHHH--
Confidence 000 000 00011211110
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPED 382 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed 382 (452)
..+.+.+ .+|+||+|||+- ..||||+..+|
T Consensus 312 -------------------------------~~l~~~~-------~~p~fv~d~P~~------------~~~f~a~~~~~ 341 (435)
T 2xgt_A 312 -------------------------------RFMTDTI-------NKPILLNRFPSE------------IKAFYMQRDAQ 341 (435)
T ss_dssp -------------------------------HHHHHHH-------TSCEEEECCBGG------------GSCTTBCBCSS
T ss_pred -------------------------------HHHHHhc-------CCcEEEECCChh------------hCcccCCCCCC
Confidence 1223333 368999999983 57898875443
Q ss_pred ccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 383 MDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 383 ~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
++. .+.+|||++||+ ||+|||+||||++.|++.|+..|+++++..| ||+|++|| +|||
T Consensus 342 --~p~--~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~----yl~a~~yG---~pPh 400 (435)
T 2xgt_A 342 --DNT--LTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYW----YLDQRLYG---TCPH 400 (435)
T ss_dssp --CTT--BBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHH----HHHHHHSS---CCCE
T ss_pred --CcC--eEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHH----HHHHHhCC---CCCC
Confidence 222 589999999998 9999999999999999999999999988776 99999999 9999
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-66 Score=539.20 Aligned_cols=300 Identities=28% Similarity=0.465 Sum_probs=205.8
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||.|++++|||+|..++|+++.+.. ..+++++|++|||||||++.+++++++||++++++|+||.+ +||+||
T Consensus 72 ~~~~el~~~~~~vl~~~~~~~P~~~~~~~---~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~-~gF~EV 147 (422)
T 1n9w_A 72 PGGLEVQAKEVEVLSPALEPTPVEIPKEE---WRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDR-QDFTEI 147 (422)
T ss_dssp TTSEEEEEEEEEEEECCCSCCC--------------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEC
T ss_pred CccEEEEEeEEEEeccCCcCCCCCccccc---cCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
Confidence 57999999999999999778999875310 14789999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccce-eecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecC
Q 043787 83 ETPVLSRSTPEGARDYL-VPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~-v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f 160 (452)
+||+|++++++|+++.+ ++ . .|+.+||+||||+|+|+|+ +|++||||||||||+|+++++|| |||||||+|++|
T Consensus 148 ~TPil~~~~~e~~~~~f~~~-~--~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~ 223 (422)
T 1n9w_A 148 FTPKVVRAGAEGGSGLFGVD-Y--FEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 223 (422)
T ss_dssp CCC-------------------------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEES
T ss_pred ECCEEEEeCCCCCceeEEEe-e--CCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeC
Confidence 99999999999988744 53 2 4677899999999999987 78999999999999999999888 799999999999
Q ss_pred C-CHHHHHHHHHHHHHHHHHHhcC----------CCCC---CCCceeeHHHHHHHhCCCCCCCcccccccccccccccCc
Q 043787 161 T-PLDDMLRLNEDLIRKIFLEIKD----------VQLP---NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESP 226 (452)
Q Consensus 161 ~-~~~dlm~~~E~li~~i~~~~~~----------~~l~---~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~ 226 (452)
+ +++|+|+++|+|++++++.+++ ..++ .||+||||.||++.|.... +..++
T Consensus 224 ~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~~~-~~~~~-------------- 288 (422)
T 1n9w_A 224 IADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEEL-GYPVG-------------- 288 (422)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTS-CCCCC--------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHhcC-Ccccc--------------
Confidence 9 9999999999999999987643 3444 7999999999999883211 10000
Q ss_pred cccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHH
Q 043787 227 FRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIR 306 (452)
Q Consensus 227 f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~ 306 (452)
..++.+....|.
T Consensus 289 ------------------------------------------------------------------~dl~~~~e~~l~-- 300 (422)
T 1n9w_A 289 ------------------------------------------------------------------QDLSEEAERLLG-- 300 (422)
T ss_dssp ------------------------------------------------------------------SSCCHHHHHHHH--
T ss_pred ------------------------------------------------------------------cccCcHHHHHHH--
Confidence 001111111111
Q ss_pred hCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccCh
Q 043787 307 CSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDL 386 (452)
Q Consensus 307 ~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~ 386 (452)
..+...++ ..|+||+|||+. ||||||+..+| .
T Consensus 301 ---------------------------~~~~~~~~------~~p~fv~d~P~~------------~~pf~~~~~~d-~-- 332 (422)
T 1n9w_A 301 ---------------------------EYAKERWG------SDWLFVTRYPRS------------VRPFYTYPEED-G-- 332 (422)
T ss_dssp ---------------------------HHHHHHTC------CSEEEEECCBGG------------GSCTTBCBCTT-S--
T ss_pred ---------------------------HHHHhhhC------CceEEEECCChh------------hCcCcCCCCCC-C--
Confidence 11223344 369999999986 99999998766 2
Q ss_pred hhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 387 SSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||++||+||+|||+|+||++.|++.|+..|++++..+| ||+||+|| ||||
T Consensus 333 ---~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~----yl~a~~yG---~PPh 387 (422)
T 1n9w_A 333 ---TTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHG----YLEVFKYG---MPPH 387 (422)
T ss_dssp ---BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH----HHGGGGBC---CCSE
T ss_pred ---EEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHcCCCHHHHHH----HHHHHhcC---CCCc
Confidence 6899999999999999999999999999999999999988776 99999999 9999
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-65 Score=531.69 Aligned_cols=297 Identities=32% Similarity=0.518 Sum_probs=249.0
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||.|++++|||+|..++|+++++. ..+++++|+++||||||++.+++++++||++++++|+||.+ +||+||
T Consensus 82 ~~~~el~~~~~~vl~~~~~~~P~~~~~~----~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~-~gF~eV 156 (429)
T 1wyd_A 82 PRGIELHAEEITLLSKAKAPLPLDVSGK----VKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYK-EGFIEI 156 (429)
T ss_dssp GGGEEEEEEEEEEEECCCSSCSSCSSSC----CCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEC
T ss_pred CccEEEEEeEEEEeccCCCCCCCCcccc----ccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhh-CCCEEE
Confidence 4799999999999999977899987532 13789999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccc-eeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecC
Q 043787 83 ETPVLSRSTPEGARDY-LVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF 160 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~-~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f 160 (452)
+||+|+++++||+++. .++. .|+.+||+||||+|+|+ |++|++||||||||||+|+++++|| |||||||+||+|
T Consensus 157 ~TP~l~~~~~e~~~~~f~~~~---~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~ 232 (429)
T 1wyd_A 157 FTPKIIASATEGGAQLFPVIY---FGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAF 232 (429)
T ss_dssp CCCSEESSCSSTTCCCCEEEE---TTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEET
T ss_pred ECCEEEeeCCCCCceeEEEec---CCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeeeecC
Confidence 9999999999999874 4542 47788999999999999 7889999999999999999999888 799999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcC----------CCCC---CCCceeeHHHHHHHhCCCCCCCcccccccccccccccCcc
Q 043787 161 TPLDDMLRLNEDLIRKIFLEIKD----------VQLP---NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPF 227 (452)
Q Consensus 161 ~~~~dlm~~~E~li~~i~~~~~~----------~~l~---~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f 227 (452)
.+++++|+++|+|++++++.+++ ..++ .||+||||.||++.|.... .++.
T Consensus 233 ~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~g------~~~~----------- 295 (429)
T 1wyd_A 233 ADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKG------YNIK----------- 295 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSS------CCCC-----------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccccccCCCCccEEEHHHHHHHHHhcC------CCcc-----------
Confidence 99999999999999999987653 3343 6999999999999873210 0000
Q ss_pred ccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHh
Q 043787 228 RVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRC 307 (452)
Q Consensus 228 ~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~ 307 (452)
+ | ..++.+..
T Consensus 296 ------------------------~------------------------------~---------~~l~~~~e------- 305 (429)
T 1wyd_A 296 ------------------------F------------------------------G---------DDIGTPEL------- 305 (429)
T ss_dssp ------------------------T------------------------------T---------SCCCHHHH-------
T ss_pred ------------------------c------------------------------C---------cccCcHHH-------
Confidence 0 0 00111110
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccCh
Q 043787 308 SAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDL 386 (452)
Q Consensus 308 ~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~ 386 (452)
..|++.++ -+|+||+|||++ |||| ++|+++|..
T Consensus 306 --------------------------~~l~~~~~------~~p~fv~d~P~~------------~~pfy~~~~~~~p~-- 339 (429)
T 1wyd_A 306 --------------------------RILNEELK------EDLYFIVDWPSD------------ARPFYTKSKSENPE-- 339 (429)
T ss_dssp --------------------------HHHHHHHC------CSEEEEECCBGG------------GSCTTBCBCCC-CC--
T ss_pred --------------------------HHHHHHhc------cCCEEEecCChh------------hChhhCCcCCCCCC--
Confidence 12333332 169999999986 8999 667766543
Q ss_pred hhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 387 SSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||++||+||+|||+|+||++.|++.|+..|++++.++| ||+||+|| +|||
T Consensus 340 ---~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~----yl~al~yG---~PP~ 394 (429)
T 1wyd_A 340 ---LSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEF----FLKWFDYG---MPPH 394 (429)
T ss_dssp ---BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH----HHGGGGSC---CCCE
T ss_pred ---eEEEEEEEECCEEEEeCeeeeCCHHHHHHHHHHcCCChHHHHH----HHHHHhcC---CCCc
Confidence 7899999999999999999999999999999999999988777 99999999 9999
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-63 Score=519.84 Aligned_cols=303 Identities=27% Similarity=0.463 Sum_probs=250.3
Q ss_pred CCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV 82 (452)
+|++||+|++++|||+|..++|+++++. ..+++++|+++||||||++.+++++++||++++++|+||.+ +||+||
T Consensus 85 ~~~~el~~~~i~vl~~~~~~lP~~~~~~----~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~~-~gF~EV 159 (438)
T 3nem_A 85 KLGFEILPEKIVVLNRAETPLPLDPTGK----VKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHE-NGFIEI 159 (438)
T ss_dssp TTSEEEEEEEEEEEECBCSSCSSCTTSS----SCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEC
T ss_pred CCcEEEEEEEEEEEecCCCCCCCCcccc----ccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-CCcEEE
Confidence 4899999999999999977899987642 14789999999999999999999999999999999999998 999999
Q ss_pred cCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC
Q 043787 83 ETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT 161 (452)
Q Consensus 83 ~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~ 161 (452)
+||+|++++|||+.+.+.... .++.+||+||||+|||+||++|++||||||||||||+++++|| ||||||||||+|+
T Consensus 160 eTPiL~~~~~eg~~~~f~~~~--~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~ 237 (438)
T 3nem_A 160 HTPKIIATATEGGTELFPMKY--FEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFI 237 (438)
T ss_dssp CCCSEESSCSSCSSSCCEEEE--TTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESC
T ss_pred eCCEEecCCCCCCccceeEee--CCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccC
Confidence 999999999999887542222 3677899999999999999999999999999999999999888 8999999999999
Q ss_pred C-HHHHHHHHHHHHHHHHHHhc----------CCCC---CCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCcc
Q 043787 162 P-LDDMLRLNEDLIRKIFLEIK----------DVQL---PNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPF 227 (452)
Q Consensus 162 ~-~~dlm~~~E~li~~i~~~~~----------~~~l---~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f 227 (452)
+ ++|+|+++|+||+++++.+. +.++ ..||+||||.||++.+.... .++.+.
T Consensus 238 ~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~~g------~~~~~~--------- 302 (438)
T 3nem_A 238 EDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLG------KEIPWG--------- 302 (438)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTT------CCCCTT---------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHHcC------CCCCCC---------
Confidence 8 99999999999999998764 3343 46999999999998753211 000000
Q ss_pred ccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHh
Q 043787 228 RVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRC 307 (452)
Q Consensus 228 ~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~ 307 (452)
..++.+...
T Consensus 303 -----------------------------------------------------------------~dl~~~~e~------ 311 (438)
T 3nem_A 303 -----------------------------------------------------------------EDIDTEGER------ 311 (438)
T ss_dssp -----------------------------------------------------------------SCCCHHHHH------
T ss_pred -----------------------------------------------------------------CCCCcHHHH------
Confidence 011111110
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccCh
Q 043787 308 SAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDL 386 (452)
Q Consensus 308 ~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~ 386 (452)
.|+. .+.+..+ -.|+||+|||.- ..|| ++++++|..
T Consensus 312 --------------------~l~~---~~~~~~~------~~p~fi~~yP~~------------~~pfy~k~~~~~p~-- 348 (438)
T 3nem_A 312 --------------------LLGK---YMMENEN------APLYFLYQYPSE------------AKPFYIMKYDNKPE-- 348 (438)
T ss_dssp --------------------HHHH---HHHHHHC------CSEEEEESCBGG------------GSCTTBCBCTTSTT--
T ss_pred --------------------HHHH---HhhhhcC------CCCEEEECCchh------------hCccccccCCCCCC--
Confidence 0111 1111111 369999999973 6789 677776643
Q ss_pred hhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 387 SSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 387 ~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||.++|.||+|||.|+||++.|++.|+..|++++.++| ||+|++|| +|||
T Consensus 349 ---~~~rfdL~~~G~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~----yl~a~~~G---~pP~ 403 (438)
T 3nem_A 349 ---ICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEF----YLKAFRYG---MPPH 403 (438)
T ss_dssp ---BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH----HHHTTSSC---CCCE
T ss_pred ---ceEEEEEEECCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHH----HHHHHHcC---CCCc
Confidence 6899999999999999999999999999999999999999888 99999999 9998
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-63 Score=521.82 Aligned_cols=292 Identities=26% Similarity=0.464 Sum_probs=246.4
Q ss_pred CCceEEEEeEEEEEecCCCCCCc--ccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 3 TGFIEVAVEHVQVLNAVRSKLPF--LVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 3 tg~iEl~~~~i~vl~~~~~~~P~--~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+|++||.|++++|||+| .++|+ ++. .+++++|+++||||||++.+++++++||++++++|+||.+ +||+
T Consensus 85 ~~~~el~~~~~~vl~~~-~~~P~~~~~~-------~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~-~gF~ 155 (434)
T 1x54_A 85 PGGAEVHVEKLEVIQAV-SEFPIPENPE-------QASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK-DGWH 155 (434)
T ss_dssp GGGEEEEEEEEEEEECC-SCCSSCSSGG-------GSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CccEEEEEeEEEEeecC-CCCCCccccc-------CCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 47999999999999999 78998 553 4789999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccce-eecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeee
Q 043787 81 EIETPVLSRSTPEGARDYL-VPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~-v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~ 158 (452)
||+||+|++++++|+++.+ ++ . .|+.+||+||||+|+|+ |++|++||||||||||+|+++++|| |||||||+||
T Consensus 156 eVeTP~l~~~~~e~~~~~f~~~-~--~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~ 231 (434)
T 1x54_A 156 EVFPPILVTGAVEGGATLFKLK-Y--FDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEA 231 (434)
T ss_dssp ECCCCSEESCCSSCGGGCCEEE-E--TTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEE
T ss_pred EEeCcEEEeecCCCCceeEEEe-e--cCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEEE
Confidence 9999999999999998844 54 2 47788999999999999 7889999999999999999999888 7999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CC------CCCCCceeeHHHHHHHhCCCCCCCccccccccccccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQ------LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIF 222 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~------l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~ 222 (452)
+|.+++++|+++|+|++++++++++ .. +..||+||||.||++.|.... .++.
T Consensus 232 ~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~g------~~~~------ 299 (434)
T 1x54_A 232 AWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKG------VNVE------ 299 (434)
T ss_dssp ETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHTT------CCCC------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHhcC------CCcc------
Confidence 9999999999999999999987653 22 235999999999999873211 0000
Q ss_pred ccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHH
Q 043787 223 LESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQ 302 (452)
Q Consensus 223 ~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~ 302 (452)
+ | ..++.+..
T Consensus 300 -----------------------------~------------------------------~---------~dl~~~~e-- 309 (434)
T 1x54_A 300 -----------------------------W------------------------------G---------DDLGADEE-- 309 (434)
T ss_dssp -----------------------------T------------------------------T---------CCCCHHHH--
T ss_pred -----------------------------c------------------------------C---------CccChHHH--
Confidence 0 0 00111110
Q ss_pred HHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCC
Q 043787 303 LLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPE 381 (452)
Q Consensus 303 l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~e 381 (452)
..+++.+ ++|+||+|||++ |||| |+|+++
T Consensus 310 -------------------------------~~l~~~~-------~~p~fv~d~P~~------------~~pfy~~~~~~ 339 (434)
T 1x54_A 310 -------------------------------RVLTEEF-------DRPFFVYGYPKH------------IKAFYMKEDPN 339 (434)
T ss_dssp -------------------------------HHHHTTC-------SSCEEEEEEEGG------------GSCTTBCBCSS
T ss_pred -------------------------------HHHHHHh-------CCcEEEEcCChh------------hCcccCCcCCC
Confidence 1122222 469999999986 8999 667776
Q ss_pred CccChhhhhhceeeeeec-Ce-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 382 DMDDLSSARALAYDMVYN-GV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 382 d~~~~~~v~a~~YDLVlN-G~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
|.. .+.+|||++| |+ ||+|||+|+||++.|++.|+..|++++..+| ||+||+|| ||||
T Consensus 340 ~p~-----~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~----yl~al~yG---~PP~ 399 (434)
T 1x54_A 340 DPR-----KVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEW----YLDLRRYG---SVPH 399 (434)
T ss_dssp CTT-----EEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH----HHHTTTSS---CCCE
T ss_pred CCC-----eEEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHH----HHHHHhcC---CCCc
Confidence 543 7899999999 99 9999999999999999999999999988777 99999999 9999
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-63 Score=524.42 Aligned_cols=324 Identities=23% Similarity=0.398 Sum_probs=248.7
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++++|||+|..++|+.... ..++++|+++|||||| ++.+++++++||+++++||+||.+ +||+
T Consensus 124 ~~ge~ei~~~~i~~l~~~~~~lP~~~~~------~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~-~gF~ 196 (521)
T 3bju_A 124 KKGELSIIPYEITLLSPCLHMLPHLHFG------LKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDE-LGFL 196 (521)
T ss_dssp TTCCEEEEEEEEEEEECCCSCCCCC----------CCHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCCEEEEEeEEEEeecCCCCCCCcccc------ccChhhhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 4799999999999999997778876432 4689999999999999 899999999999999999999988 9999
Q ss_pred EEcCceEeecCCCC--CccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEG--ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eG--a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++| |++|.++++. .+..+||+||||||+|+||++|++||||||||||||+++++|+|||||||+||
T Consensus 197 EVeTPiL~~~-~gGa~a~~F~t~~~~-~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~ 274 (521)
T 3bju_A 197 EIETPMMNII-PGGAVAKPFITYHNE-LDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYM 274 (521)
T ss_dssp ECCCCSEESS-CCSSSCCCCEEEETT-TTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEE
T ss_pred EEeCceeecc-CCCccccceeeeccc-CCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCCccchhhhhhhhhh
Confidence 9999999965 455 4678776542 47888999999999999999999999999999999999997779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC-----------------CCCCCCCceeeHHHHHHHhC-CCCCCCccccccccccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD-----------------VQLPNPFPRLTYAEAMSRYG-SDRPDTRFSLQLNDVSD 220 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~-----------------~~l~~pf~rity~eA~~~~g-~dkpd~r~~~~~~~~~~ 220 (452)
+|+|++|+|+++|+||+++++.+++ +++..||+||||.||++.+. .+.++ ..+
T Consensus 275 af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~g~~~~~---------~~~ 345 (521)
T 3bju_A 275 AYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPE---------TNL 345 (521)
T ss_dssp ETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECCSSCEEEEHHHHHHHHHTSCCCC---------GGG
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccCCCcccccHHHHHHHHhCCCCCc---------ccc
Confidence 9999999999999999999998865 23567999999999999873 22111 001
Q ss_pred ccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhH
Q 043787 221 IFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNK 300 (452)
Q Consensus 221 ~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~ 300 (452)
+-.+.. .+. +.+.+++.|.. . +.
T Consensus 346 l~~~~~---------------------------~~~-----l~~~~~~~~~~---~----~~------------------ 368 (521)
T 3bju_A 346 FETEET---------------------------RKI-----LDDICVAKAVE---C----PP------------------ 368 (521)
T ss_dssp TTSHHH---------------------------HHH-----HHHHHHHTTCC---C----CS------------------
T ss_pred CCcHHH---------------------------HHH-----HHHHHHHcCCC---C----CC------------------
Confidence 000000 000 01112222211 0 00
Q ss_pred HHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCC
Q 043787 301 EQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNP 380 (452)
Q Consensus 301 ~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ 380 (452)
.......|..+ ..+. +.+.-..|+||+|||.. .+||+++++
T Consensus 369 ---------------------~~~~~~~l~~~---~e~~---ve~~l~~P~fI~dyP~~------------~spla~~~~ 409 (521)
T 3bju_A 369 ---------------------PRTTARLLDKL---VGEF---LEVTCINPTFICDHPQI------------MSPLAKWHR 409 (521)
T ss_dssp ---------------------CCCHHHHHHHH---HHHH---TGGGCCSCEEEECCBGG------------GCTTBCBCS
T ss_pred ---------------------CCCHHHHHHHH---HHHH---HHHhcCCcEEEECCccc------------cCcccccCC
Confidence 00001111111 1111 11222469999999985 689999988
Q ss_pred CCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHc------CCCHHH--HhhhhhhhhhhhhcCCCCCCCC
Q 043787 381 EDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV------GISPEQ--FIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 381 ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l------g~~~~~--~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+|.. .+.+|||++||.||+||+.|+||++.|++.|+.. |.+++. .+| ||+||+|| ||||
T Consensus 410 ~dp~-----~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~----yl~al~yG---~PP~ 476 (521)
T 3bju_A 410 SKEG-----LTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDEN----FCTALEYG---LPPT 476 (521)
T ss_dssp SSTT-----BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHH----HHHHHTTT---CCSE
T ss_pred CCCC-----eeeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHH----HHHHHhcC---CCCc
Confidence 7654 7899999999999999999999999999999654 766654 356 99999999 9998
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-63 Score=519.31 Aligned_cols=298 Identities=22% Similarity=0.393 Sum_probs=238.0
Q ss_pred CC-CceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KT-GFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~t-g~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
+| |++||+|++++|||+|..++|.... ..+++++|+++||||||++.++++|++||++++++|+||.+ +||+
T Consensus 104 ~t~g~~El~~~~i~vl~~a~~~~~~~~~------~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff~~-~gF~ 176 (456)
T 3m4p_A 104 ADILNLEMQVTEWKVIGESPIDLENIIN------KDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHD-NHFT 176 (456)
T ss_dssp TTBCSSEEEEEEEEEEECCCGGGTTTSC------TTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCCcEEEEEeEEEEEecCCCCCccccc------ccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHHHh-CCCE
Confidence 44 9999999999999998543442221 25789999999999999999999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeec
Q 043787 81 EIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELA 159 (452)
Q Consensus 81 EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~ 159 (452)
||+||+|++++||||.+.+.... .|+.+||+||||||||+||+ |++||||||||||||+++++|| ||||||||||+
T Consensus 177 EVeTPiL~~s~~eGg~~~f~~~~--~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~a 253 (456)
T 3m4p_A 177 EIQPPTIVKTQCEGGSTLFKLQY--FNEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELP 253 (456)
T ss_dssp ECCCCSEEC------CCCCEEEE--TTEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEE
T ss_pred EEeCCeeecCCCCCccccccccc--cCCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHh
Confidence 99999999999998876553322 36788999999999999876 6999999999999999999888 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC----------CC---CCCCCceeeHHHHHHHh---CCCCCCCcccccccccccccc
Q 043787 160 FTPLDDMLRLNEDLIRKIFLEIKD----------VQ---LPNPFPRLTYAEAMSRY---GSDRPDTRFSLQLNDVSDIFL 223 (452)
Q Consensus 160 f~~~~dlm~~~E~li~~i~~~~~~----------~~---l~~pf~rity~eA~~~~---g~dkpd~r~~~~~~~~~~~~~ 223 (452)
|++++|+|+++|+||+++++.+++ .+ +..||+||||.||++.+ |.+..+
T Consensus 254 f~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~--------------- 318 (456)
T 3m4p_A 254 FISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD--------------- 318 (456)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS---------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc---------------
Confidence 999999999999999999987754 22 24799999999999875 211100
Q ss_pred cCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHH
Q 043787 224 ESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQL 303 (452)
Q Consensus 224 ~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l 303 (452)
. +. .+.+.++.+..
T Consensus 319 -~-------------------------~~-------------------------------------~~g~~l~~~~e--- 332 (456)
T 3m4p_A 319 -K-------------------------PF-------------------------------------EYGEDISEKPE--- 332 (456)
T ss_dssp -S-------------------------CC-------------------------------------CTTCCCCHHHH---
T ss_pred -c-------------------------Cc-------------------------------------chHHHHHHHHH---
Confidence 0 00 00011221111
Q ss_pred HHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCC
Q 043787 304 LIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPED 382 (452)
Q Consensus 304 ~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed 382 (452)
..+++.++ .++||+|||.- ..|| ++++++|
T Consensus 333 ------------------------------~~l~~~~~-------~P~fv~~yP~~------------~~pfy~k~~~~d 363 (456)
T 3m4p_A 333 ------------------------------RQMTDEIG-------CPIFMIHFPSK------------MKAFYMSKVPGH 363 (456)
T ss_dssp ------------------------------HHHHHHHT-------SCEEEECCBGG------------GSCTTBCEETTE
T ss_pred ------------------------------HHHHHHhC-------ceEEEECCCch------------hCccccccCCCC
Confidence 12334442 58999999973 6788 5566665
Q ss_pred ccChhhhhhceeeeeecCe-EeeccccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 383 MDDLSSARALAYDMVYNGV-EIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 383 ~~~~~~v~a~~YDLVlNG~-EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.. .+.+|||.++|+ ||+|||.|+||++.|.+.|+..|++++.++| ||+|++|| +|||
T Consensus 364 p~-----~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~----yld~~~~G---~pP~ 421 (456)
T 3m4p_A 364 PD-----LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYW----YTQQRKYG---SCPH 421 (456)
T ss_dssp EE-----EECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHH----HHGGGTSS---CCCE
T ss_pred CC-----eeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHH----HHHHHHcC---CCcc
Confidence 43 589999999998 9999999999999999999999999999998 99999999 9998
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-62 Score=518.00 Aligned_cols=307 Identities=28% Similarity=0.415 Sum_probs=236.9
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccc-------------------------------------------------
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADD------------------------------------------------- 32 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~------------------------------------------------- 32 (452)
++|++||+|++|+|||+|..++|+++++..+
T Consensus 136 ~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 215 (548)
T 3i7f_A 136 TQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKAS 215 (548)
T ss_dssp SSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------------CCC
T ss_pred CCCcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999999997789999754210
Q ss_pred --cCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCccceeecccCCCce
Q 043787 33 --AKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GARDYLVPSRVQPGTF 109 (452)
Q Consensus 33 --~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~~~~v~~~~~~g~~ 109 (452)
....+++++|++|||||||++.+++++++||++++++|+||.+ +||+||+||+|++++|| ||+.|.+++. +..
T Consensus 216 ~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~-~gF~EVeTPiL~~~~~egga~~F~v~~~---~~~ 291 (548)
T 3i7f_A 216 AQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTS-QKFVEIHTPKLIGCSSEGGSNIFEVKYF---DRK 291 (548)
T ss_dssp CCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSBC----------------------
T ss_pred ccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEeCCEEecccCCCCcceeEEecC---CCc
Confidence 0124689999999999999999999999999999999999998 99999999999999999 5667777764 445
Q ss_pred eeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcC----
Q 043787 110 YALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKD---- 183 (452)
Q Consensus 110 ~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~---- 183 (452)
+||+||||||||+||++|++||||||||||||+++++|| ||||||||||+|. +++++|+++|+||+++++.+.+
T Consensus 292 ~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~ 371 (548)
T 3i7f_A 292 AYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPD 371 (548)
T ss_dssp CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred eEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 789999999999999999999999999999999999888 8999999999998 7999999999999999987631
Q ss_pred -----------CCCC-CCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcc
Q 043787 184 -----------VQLP-NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKT 251 (452)
Q Consensus 184 -----------~~l~-~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~ 251 (452)
..+. .||+||||.||++.+....-+ +.+.
T Consensus 372 el~~~~~~~~~~~~~~~pf~rit~~eai~~l~~~g~~------~~~~--------------------------------- 412 (548)
T 3i7f_A 372 ELKVIRKQYPFEDLIYRPFLRLTYKEAIEMLRASGET------IGDY--------------------------------- 412 (548)
T ss_dssp HHHHHHHHSCCCCCCCCSCEEEEHHHHHHHHHHTTCC------CCTT---------------------------------
T ss_pred HHHHhhhcCCccccccCCcceeEHHHHHHHHHHcCCC------CCCc---------------------------------
Confidence 0111 689999999999876321100 0000
Q ss_pred cchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHH
Q 043787 252 YSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDR 331 (452)
Q Consensus 252 ~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~ 331 (452)
..++.+. ...||.
T Consensus 413 -----------------------------------------~dl~~~~--------------------------e~~l~~ 425 (548)
T 3i7f_A 413 -----------------------------------------DDFTTPQ--------------------------EVKLGE 425 (548)
T ss_dssp -----------------------------------------CCCCHHH--------------------------HHHHHH
T ss_pred -----------------------------------------cccchHH--------------------------HHHHHH
Confidence 0011100 011222
Q ss_pred HHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccChhhhhhceeeeeecCeEeecccccc
Q 043787 332 LRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRI 410 (452)
Q Consensus 332 lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRI 410 (452)
+ +.+.++ -.+++|+|||.- ..|| ++++++|.. .+.+|||.++|.||+|||.|+
T Consensus 426 ~---i~~~~~------~~~~~i~~yP~~------------~~pfYak~~~~dp~-----~~~rFDL~i~G~Ei~nG~~rl 479 (548)
T 3i7f_A 426 L---IKAKYN------TDFYILDKFPAA------------IRPFYTMPDIDDPN-----YSNSYDVFVRGQEITSGAQRI 479 (548)
T ss_dssp H---HHHHHC------CSEEEEECCBGG------------GSCTTBCBCSSCTT-----BBSEEEEEETTEEEEEEEEEC
T ss_pred H---HHHHcC------CCeEEEecCccc------------cCchhhccCCCCCC-----eEEEEEEEECCEEEeeCeeec
Confidence 2 223344 136778899973 6799 667777654 689999999999999999999
Q ss_pred ccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 411 YKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 411 h~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
||++.|++.|+..|++++..+| ||+||+|| ||||
T Consensus 480 ~Dp~~~~~R~~~~G~d~~~~e~----yl~al~yG---~PPh 513 (548)
T 3i7f_A 480 HDPEFLMKRCIEKGVDPATLKD----YIESFRFG---SWPH 513 (548)
T ss_dssp CCHHHHHHHHHHTTCCGGGGHH----HHHTTSSC---CCCE
T ss_pred CCHHHHHHHHHHcCCChHHHHH----HHHHHhCC---CCCc
Confidence 9999999999999999999888 99999999 9998
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-60 Score=503.12 Aligned_cols=323 Identities=24% Similarity=0.399 Sum_probs=244.2
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeec-chHHHHHHHHHHHHHHHHHHHHhhcCCeE
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLR-RQQMNHNILLRHKVVKLIRRYLEDVHGFV 80 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~ 80 (452)
++|++||.|++|+|||+|..++|+...+ ..++++|+++|||||| ++.++++|++||+++++||+||.+ +||+
T Consensus 152 ~~gelel~~~~i~vLs~a~~plP~k~~~------l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~-~gFl 224 (529)
T 4ex5_A 152 NKGELSVKCTQLRLLAKALRPLPDKFHG------LADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGD-ADFM 224 (529)
T ss_dssp TTSCEEEEEEEEEEEECCSSCCCC------------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCCcEEEEEEEEEEEecCCCCCCccccC------CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 6899999999999999997677765432 3578999999999997 899999999999999999999998 9999
Q ss_pred EEcCceEeecCCCCC--ccceeecccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeee
Q 043787 81 EIETPVLSRSTPEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL 158 (452)
Q Consensus 81 EV~TPiL~~~~~eGa--~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~ 158 (452)
||+||+|+++ ++|| ++|.+..+ ..+..+||+||||||+|+||++|++||||||||||||+++++|+||||||||||
T Consensus 225 EVeTPiL~~~-~gGA~a~pF~t~~n-~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~ 302 (529)
T 4ex5_A 225 EVETPMLHPI-PGGAAAKPFVTHHN-ALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYA 302 (529)
T ss_dssp ECCCCSEESS-CCSSSSCCCEEEET-TTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEE
T ss_pred EEeCCeeecc-CCCCcccccccccc-cCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhh
Confidence 9999999954 6666 46655433 246778899999999999999999999999999999999987779999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccc
Q 043787 159 AFTPLDDMLRLNEDLIRKIFLEIKD----------VQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFR 228 (452)
Q Consensus 159 ~f~~~~dlm~~~E~li~~i~~~~~~----------~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~ 228 (452)
+|+|++|+|+++|+||+++++.+++ ++++.||+||||.||+++|++.. |. .++. +
T Consensus 303 af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~id~~~pf~Rity~eAi~~~~~~~-~~---------~~~~-~---- 367 (529)
T 4ex5_A 303 AYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSY-TD---------GQLS-D---- 367 (529)
T ss_dssp ETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEETTSCCEEEEHHHHHHHHCTTS-CH---------HHHT-C----
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhCcCceecCceeeccCCCceEEEHHHHHHHHhCCC-Ch---------hhcC-C----
Confidence 9999999999999999999999876 46788999999999999997621 10 0000 0
Q ss_pred cccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhC
Q 043787 229 VFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCS 308 (452)
Q Consensus 229 ~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~ 308 (452)
.. .+...+++.|.+- +. . .+++
T Consensus 368 -------------------------~~-----~l~~~~~~~g~~~-------~~-------~---~~~~----------- 389 (529)
T 4ex5_A 368 -------------------------DA-----FLRSELKRLGVDV-------TQ-------P---AFLN----------- 389 (529)
T ss_dssp -------------------------HH-----HHHHHHHHTTCCT-------TS-------G---GGTT-----------
T ss_pred -------------------------HH-----HHHHHHHHcCCCC-------CC-------c---ccCC-----------
Confidence 00 0111222222210 00 0 0000
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhh
Q 043787 309 AGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS 388 (452)
Q Consensus 309 ~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~ 388 (452)
..+|+|-..+.+.+ +.+.-..|+||+|||.- ..||++++++|..
T Consensus 390 ------------------~~~g~l~~e~~~~~--vE~~l~~P~FI~dyP~~------------~splak~~~~~p~---- 433 (529)
T 4ex5_A 390 ------------------AGIGALQLALFEET--AEAQLWEPTFIIDYPIE------------VSPLARESDTVAG---- 433 (529)
T ss_dssp ------------------CCHHHHHHHHHHHH--TGGGCCSCEEEEEEEGG------------GCTTBCBCSSSTT----
T ss_pred ------------------CCHHHHHHHHHHHH--hccccCCCEEEECCchh------------hCCCcccCCCCCC----
Confidence 00122222222211 11111369999999973 6789988877654
Q ss_pred hhhceeeeeecCeEeeccccccccHHHHHHHHHH------cCCCHHHH---hhhhhhhhhhhhcCCCCCCCC
Q 043787 389 ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI------VGISPEQF---IFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 389 v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~------lg~~~~~~---~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+.+|||.++|.||+||+.|+||++.|+..|+. .| +++.. +| ||+||+|| +|||
T Consensus 434 -~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~g-d~ea~~~De~----yl~aleyG---~PP~ 496 (529)
T 4ex5_A 434 -ITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAG-DEEAMFFDAD----YIRALEYG---MPPT 496 (529)
T ss_dssp -EEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTT-CTTSCCCCHH----HHHHHHTC---CCCE
T ss_pred -ceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcC-CcccccchHH----HHHHHHcC---CCCC
Confidence 689999999999999999999999999999942 34 33332 57 99999999 9998
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-59 Score=473.77 Aligned_cols=274 Identities=24% Similarity=0.350 Sum_probs=204.2
Q ss_pred eecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCc--ccee----ecccCCCceeeecCCHHHHHHH
Q 043787 49 DLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGAR--DYLV----PSRVQPGTFYALPQSPQLFKQM 122 (452)
Q Consensus 49 dlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~--~~~v----~~~~~~g~~~~L~qSpQl~kq~ 122 (452)
+.|++ .++++++||+++++||+||.+ +||+||+||+|++++++||+ .|.+ |++.. +..+||+||||||||+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~-~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~-~~~~yL~~Spql~~k~ 103 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQ-GMNLWLMTSPEYHMKR 103 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSC-CEEEEECSCSHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHH-CCCEEEECCEEEecCCCCCccceEEEEecCccccc-CCCEeecCCHHHHHHH
Confidence 44555 889999999999999999998 99999999999999988764 3333 33322 2446799999999999
Q ss_pred HhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeeHHHHHHHh
Q 043787 123 LMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY 202 (452)
Q Consensus 123 Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~~l~~pf~rity~eA~~~~ 202 (452)
||++|++||||||||||||+++++|+||||||||||+|++++++|+++|+||+++++ ..||+||||.|||++|
T Consensus 104 l~~~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-------~~~~~rity~ea~~~~ 176 (345)
T 3a5y_A 104 LLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-------CPAAESLSYQQAFLRY 176 (345)
T ss_dssp HHHTTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-------CCCCEEEEHHHHHHHH
T ss_pred HHHcCCCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-------CCCCcEeeHHHHHHHH
Confidence 999999999999999999999777779999999999999999999999999999996 1489999999999999
Q ss_pred -CCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEec
Q 043787 203 -GSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLD 281 (452)
Q Consensus 203 -g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 281 (452)
|+|+|+.. . .+ +.+.+++.| +.|+...+
T Consensus 177 ~g~d~~~~~----~---~~-----------------------------------------l~~~~~~~g---~~~~~~~~ 205 (345)
T 3a5y_A 177 LEIDPLSAD----K---TQ-----------------------------------------LREVAAKLD---LSNVADTE 205 (345)
T ss_dssp TCCCTTCCC-----------------------------------------------------------------------
T ss_pred hCCCCCCCC----H---HH-----------------------------------------HHHHHHHcC---CcccCCCc
Confidence 77765310 0 00 001111111 11111000
Q ss_pred CCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCcc
Q 043787 282 AGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEW 361 (452)
Q Consensus 282 ~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~ 361 (452)
+ .++ .+. ...|+ ..+...+| ..+|+||+|||++.
T Consensus 206 ~-----------~~~-----~~~---------------------e~~l~---~~ve~~lg-----~~~p~fv~dyP~~~- 239 (345)
T 3a5y_A 206 E-----------DRD-----TLL---------------------QLLFT---FGVEPNIG-----KEKPTFVYHFPASQ- 239 (345)
T ss_dssp --------------------HHH---------------------HHHHH---HHTGGGSS-----SSSCEEEECCBGGG-
T ss_pred C-----------CHh-----HHH---------------------HHHHH---HHHHHHcC-----CCCEEEEECCChhh-
Confidence 0 000 000 01111 01111222 25799999999973
Q ss_pred CcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHc-------CCCHHHHhhhh
Q 043787 362 NDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIV-------GISPEQFIFAE 434 (452)
Q Consensus 362 ~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~l-------g~~~~~~~~~f 434 (452)
.||++++++|.. .+++|||++||+||+|||+||||++.|++.|+.. |++++++++
T Consensus 240 -----------~~~~~~~~~~~~-----~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~-- 301 (345)
T 3a5y_A 240 -----------ASLAQISTEDHR-----VAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQ-- 301 (345)
T ss_dssp -----------CTTBCBCSSCTT-----BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCH--
T ss_pred -----------ChhhCCCCCCCC-----eEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHH--
Confidence 589888765542 5899999999999999999999999999999875 898888852
Q ss_pred hhhhhhhhcCCCCCCCC
Q 043787 435 VVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 435 ~~~l~a~~~G~~~~~p~ 451 (452)
+||+||+|| ||||
T Consensus 302 -~yl~al~yG---~PPh 314 (345)
T 3a5y_A 302 -NLIEALKVG---MPDC 314 (345)
T ss_dssp -HHHHHHHHC---CCSE
T ss_pred -HHHHHHhcC---CCCC
Confidence 399999999 9999
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-52 Score=412.60 Aligned_cols=239 Identities=23% Similarity=0.387 Sum_probs=208.1
Q ss_pred ccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeec--------CCCCCccceeecccCCCceeeecCC
Q 043787 44 RYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS--------TPEGARDYLVPSRVQPGTFYALPQS 115 (452)
Q Consensus 44 ~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~--------~~eGa~~~~v~~~~~~g~~~~L~qS 115 (452)
+|||||+|++ +++++++|+++++++|+||.+ +||+||+||+|+++ .+||++.|.++. .++.++|+||
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~-~GF~EVeTP~l~~~~~~~~~~~~~e~a~~f~~~~---~~~~~~L~~S 75 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVK-EGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEI---YGVKMRLTHS 75 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHH-TTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEE---TTEEEEECSC
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHH-CCCEEEECCEEEEccchhccCCCCCcceeEEEEc---CCCCEEeccC
Confidence 5899999999 999999999999999999988 99999999999999 889988777653 3677899999
Q ss_pred HHHHHHHHhhcCCCceEEEeeeeecCC--CCCCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhc---CCCCC--
Q 043787 116 PQLFKQMLMVSGFDKYYQIARCFRDED--LRADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK---DVQLP-- 187 (452)
Q Consensus 116 pQl~kq~Lm~~g~~rvfqi~~~FR~E~--~~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~---~~~l~-- 187 (452)
||+|+|+++++|++||||||||||+|+ +++.|| |||||||+|++|.+++++|+++|+|++++++.+. +..+.
T Consensus 76 pe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~ 155 (294)
T 1nnh_A 76 MILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKT 155 (294)
T ss_dssp SHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred hHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 999999999999999999999999999 887777 7999999999999999999999999999998765 33332
Q ss_pred CCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHH
Q 043787 188 NPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAI 267 (452)
Q Consensus 188 ~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~ 267 (452)
.+|+|+||.||++.||. +++
T Consensus 156 ~~~~r~~y~ea~~~~g~-------------------~~e----------------------------------------- 175 (294)
T 1nnh_A 156 KRFEVFEYSEVLEEFGS-------------------DEK----------------------------------------- 175 (294)
T ss_dssp SSCEEEEHHHHHHHTSS-------------------HHH-----------------------------------------
T ss_pred CCceEeEHHHHHHHhCC-------------------hHh-----------------------------------------
Confidence 34999999999986542 000
Q ss_pred HcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCC
Q 043787 268 KSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSK 347 (452)
Q Consensus 268 ~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~ 347 (452)
| ++..
T Consensus 176 -----------------------------------------------------------------r---~~~~------- 180 (294)
T 1nnh_A 176 -----------------------------------------------------------------A---SQEM------- 180 (294)
T ss_dssp -----------------------------------------------------------------H---HHHC-------
T ss_pred -----------------------------------------------------------------h---hhhc-------
Confidence 0 0111
Q ss_pred ccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeec-Ce-EeeccccccccHHHHHHHHHHcCC
Q 043787 348 HSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYN-GV-EIGGGSLRIYKREVQQKVLEIVGI 425 (452)
Q Consensus 348 ~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlN-G~-EiGGGSiRIh~~elQ~~if~~lg~ 425 (452)
.+++||+||| +|||+|. |. . .+.+|||++| |+ ||+|||+|+||++.|.+.|+..|+
T Consensus 181 ~~P~~v~~~P---------------~pf~~~~--d~---~--~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~ 238 (294)
T 1nnh_A 181 EEPFWIINIP---------------REFYDRE--VD---G--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGL 238 (294)
T ss_dssp SSCEEEECCC---------------CCTTBCE--ET---T--EECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTC
T ss_pred CCCEEEEcCC---------------hHHhCCC--CC---C--eEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCC
Confidence 3689999999 6899996 32 2 6899999999 99 999999999999999999999999
Q ss_pred CHHHHhhhhhhhhhhhhcCCCCCC-CC
Q 043787 426 SPEQFIFAEVVAIPALSSGDFNCQ-PQ 451 (452)
Q Consensus 426 ~~~~~~~~f~~~l~a~~~G~~~~~-p~ 451 (452)
+++..+| ||+|++|| +| ||
T Consensus 239 ~~~~~~~----~l~~l~~G---~p~P~ 258 (294)
T 1nnh_A 239 NEDSFRP----YLEIAKAG---KLKPS 258 (294)
T ss_dssp CGGGGHH----HHHHHHTT---CCCCE
T ss_pred CccCHHH----HHHHHhcC---CCCCc
Confidence 9998777 99999999 88 98
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-24 Score=214.59 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=128.4
Q ss_pred CCCceEEEEeEEEEEecCCCCCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHH-----HHHHHHHHHHHHhhc
Q 043787 2 KTGFIEVAVEHVQVLNAVRSKLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILL-----RHKVVKLIRRYLEDV 76 (452)
Q Consensus 2 ~tg~iEl~~~~i~vl~~~~~~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~-----Rs~i~~~iR~ff~~~ 76 (452)
++|++||+|++++|||+|..++|+++++ . ..++++||||+|++.++++++. ++++.+.+|++|..
T Consensus 23 ~~~~~ei~~~~~~vl~~a~~~~P~~~~~-------~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~- 92 (290)
T 3qtc_A 23 APALTKSQTDRLEVLLNPKDEISLNSGK-------P--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVD- 92 (290)
T ss_dssp -CCCCHHHHHHHHHHCCTTCC----CCS-------C--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-
T ss_pred CCceEEEEhhhhhhhccCCCCCCCCcch-------h--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHH-
Confidence 4689999999999999987789998742 2 3499999999999999999999 99999999999998
Q ss_pred CCeEEEcCceEeecCCC------CCcccee-ecccCCCceeeec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC
Q 043787 77 HGFVEIETPVLSRSTPE------GARDYLV-PSRVQPGTFYALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL 143 (452)
Q Consensus 77 ~gF~EV~TPiL~~~~~e------Ga~~~~v-~~~~~~g~~~~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~ 143 (452)
.||.||.||+|+++++. +..++.. ...+ +..++|+ +|||+++++.+. .+..|+|+||+|||+|+.
T Consensus 93 ~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~ 170 (290)
T 3qtc_A 93 RGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV--DKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD 170 (290)
T ss_dssp TTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE--TTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC
T ss_pred CCCEEEECCceeeHHHHHhcCCCcCCchhhhheee--CCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC
Confidence 99999999999987642 1111111 1111 3567899 999999887653 556899999999999988
Q ss_pred CCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHH
Q 043787 144 RADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRK 176 (452)
Q Consensus 144 ~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~ 176 (452)
+++|.+||||+|+++++. ++.++..+++++++.
T Consensus 171 ~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~ 205 (290)
T 3qtc_A 171 GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNH 205 (290)
T ss_dssp SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred CCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHH
Confidence 877889999999999996 577777777766653
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.1e-11 Score=115.75 Aligned_cols=145 Identities=18% Similarity=0.313 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHh-----hcCCeEEEcCceEeecCCC------C-CccceeecccCCCceeeecCCHHHHHHHHhh
Q 043787 58 NILLRHKVVKLIRRYLE-----DVHGFVEIETPVLSRSTPE------G-ARDYLVPSRVQPGTFYALPQSPQLFKQMLMV 125 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~-----~~~gF~EV~TPiL~~~~~e------G-a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~ 125 (452)
.++.....+..+++||. . .|+++|.+|+++..+.. | -++.-+.....++..+-+.+|--.+|++.+.
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~-L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~ 82 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEER-LGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLG 82 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh-cCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHH
Confidence 35667788889999998 6 89999999999886432 2 1222222222247777899999999999776
Q ss_pred c-CC---CceEEEeeeeecCCC-CCCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcC------------CCCC
Q 043787 126 S-GF---DKYYQIARCFRDEDL-RADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKD------------VQLP 187 (452)
Q Consensus 126 ~-g~---~rvfqi~~~FR~E~~-~~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~------------~~l~ 187 (452)
. |+ +.+|+-.++-|.|+. -..+| -+|+|.|||.+....+..++.+++.++.|+..+.. ..++
T Consensus 83 ~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~~~~~~y~l~p~Lp 162 (330)
T 12as_A 83 QHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLP 162 (330)
T ss_dssp HTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSC
T ss_pred hCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCC
Confidence 4 47 899999999997543 33445 79999999999998888999999998877765431 1245
Q ss_pred CCCceeeHHHHHHHhC
Q 043787 188 NPFPRLTYAEAMSRYG 203 (452)
Q Consensus 188 ~pf~rity~eA~~~~g 203 (452)
.+|..+|.+|+.++|+
T Consensus 163 ~~i~fitsqeL~~~YP 178 (330)
T 12as_A 163 DQIHFVHSQELLSRYP 178 (330)
T ss_dssp SSCEEEEHHHHHHHSS
T ss_pred CceEEEeHHHHHHHcC
Confidence 5666666766666664
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-09 Score=107.62 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecC--------CC--CCc---c-ceeecccCC---------Ccee--eecCCH
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRST--------PE--GAR---D-YLVPSRVQP---------GTFY--ALPQSP 116 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~--------~e--Ga~---~-~~v~~~~~~---------g~~~--~L~qSp 116 (452)
.+++.+.+|++|.. .||.||.+|.+.+.. |. .|+ + |.+...... .... ..++||
T Consensus 103 ~~~~~~~Ir~~f~~-~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 103 ITLMERELVEIFRA-LGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHH-CCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 57788999999998 999999999997631 11 111 1 222111000 0222 346788
Q ss_pred HHHHHHHhhcC--CCceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHHHH
Q 043787 117 QLFKQMLMVSG--FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 117 Ql~kq~Lm~~g--~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~i~ 178 (452)
.+.. . |+.+ --|+|+||+|||+|+.+++|.|||+|||+.+++. ++.+++..++.+++.++
T Consensus 182 ~llr-~-l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lf 245 (350)
T 1b7y_A 182 MQVR-Y-MVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALF 245 (350)
T ss_dssp HHHH-H-HHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHS
T ss_pred HHHH-H-HHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhc
Confidence 8763 3 3433 3589999999999876676779999999999985 89999999999988765
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-09 Score=105.40 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCccc--eeecccCCC-----ceeeecC--CHHHHHHHHhhcC---
Q 043787 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGARDY--LVPSRVQPG-----TFYALPQ--SPQLFKQMLMVSG--- 127 (452)
Q Consensus 61 ~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~~~--~v~~~~~~g-----~~~~L~q--SpQl~kq~Lm~~g--- 127 (452)
-.+++.+.+|++|.. .||.||++|.+.+... -.+..+ -.|.+...+ ....|++ ||.+ ++. ++.+
T Consensus 54 ~~~~~~~~iR~~l~~-~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~l-l~~-l~~N~~~ 130 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLG-LGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQ-ART-MEKRNGQ 130 (294)
T ss_dssp HHHHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHH-HHH-HHHTTTC
T ss_pred HHHHHHHHHHHHHHH-CCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHH-HHH-HHhcCCC
Confidence 457789999999998 9999999999976410 001000 011111011 1123544 5665 333 5655
Q ss_pred -CCceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHH
Q 043787 128 -FDKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 128 -~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~ 178 (452)
..|+|+||+|||+++.++.|.|||+||++.+++ +++.+++..+|.+++.++
T Consensus 131 ~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 131 GPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp SCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 679999999999876555556999999999999 689999999999998765
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-08 Score=96.67 Aligned_cols=110 Identities=18% Similarity=0.312 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC--c-ccee-ecccCCCceeeecC--CHHHHH--HHHhhcCCC--
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA--R-DYLV-PSRVQPGTFYALPQ--SPQLFK--QMLMVSGFD-- 129 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa--~-~~~v-~~~~~~g~~~~L~q--SpQl~k--q~Lm~~g~~-- 129 (452)
.++.+.+|++|.. .||.||.||.|++.. ..|. . +... .... +..++|++ +|.+.. .. +...-.
T Consensus 74 ~~l~~~ir~~~~~-~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl--~e~~~LRp~l~p~l~~~~r~-~~~~~~~P 149 (288)
T 3dsq_A 74 LELEEKLAKALHQ-QGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWL--DGKKCLRPMLAPNLYTLWRE-LERLWDKP 149 (288)
T ss_dssp HHHHHHHHHHHHT-TTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEE--ETTEEECSCSHHHHHHHHHH-HTTTSCSC
T ss_pred HHHHHHHHHHHHH-CCCEEEECCeeecHHHHhhcCCCcccccEEeeccc--ccchhhhhcChHHHHHHHHH-HHhCCCCC
Confidence 6789999999988 999999999998753 1111 1 1111 0011 12357874 476652 22 222223
Q ss_pred -ceEEEeeeeecCCCCCCCCcceeeeeeeecCC----CHHHHHHHHHHHHHH
Q 043787 130 -KYYQIARCFRDEDLRADRQPEFTQLDMELAFT----PLDDMLRLNEDLIRK 176 (452)
Q Consensus 130 -rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~----~~~dlm~~~E~li~~ 176 (452)
|+|++|+|||+|..+..|.+||+|+|++.... ++.+++..++++++.
T Consensus 150 lrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~ 201 (288)
T 3dsq_A 150 IRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEA 201 (288)
T ss_dssp EEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHH
Confidence 89999999999999988889999999999875 355566666555543
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=98.25 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--------CCCccceeecccCCCceeee-cCCHHHHHHH----
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--------EGARDYLVPSRVQPGTFYAL-PQSPQLFKQM---- 122 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--------eGa~~~~v~~~~~~g~~~~L-~qSpQl~kq~---- 122 (452)
..-.+++.++.+.+++.+.. .||.||.||+|..... ..+.+.+ ++ .+..++| |+|.+-+-.+
T Consensus 169 p~ga~l~~~L~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy---~~-~~~~l~LrPt~e~~i~~~~~~~ 243 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTK-KGYKEICPPHLVKPEILIGTGQLPKFEEDLY---KC-ERDNLYLIPTAEVPLTNLYREE 243 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHH-TTCEEEECCSEECHHHHHHHSCTTTTGGGSC---BC-TTTCCEECSSTHHHHHGGGTTE
T ss_pred cHHHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHHHhcCCCCcChhhhe---Ee-cCCeEEEcCCCcHHHHHHHHhh
Confidence 44578899999999999987 9999999999988651 1122222 11 1334456 6666533322
Q ss_pred Hhhc--CCCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 123 LMVS--GFDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 123 Lm~~--g~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
++.. -.-|+|++++|||+|.+.+ .|..||+|+|++. |.+.++..+..++++..+.
T Consensus 244 i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~~ 307 (425)
T 2dq3_A 244 ILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDAE 307 (425)
T ss_dssp EEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred ccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHHH
Confidence 2221 1469999999999998652 2788999999965 5555666655566654433
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-07 Score=95.97 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----Cccce-eecccCCCceeeecCC-----HHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----ARDYL-VPSRVQPGTFYALPQS-----PQLFK 120 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~~~~-v~~~~~~g~~~~L~qS-----pQl~k 120 (452)
+-.-.+++.+|.+.+|+.|.. .||.||.||+|.+... .| ..+.+ +..+ .++.++|... +.+++
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~-~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~--~~~~~~LrPt~ee~t~~i~r 139 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNR-AGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADR--HKRELLYGPTNEEMITEIFR 139 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECT--TCCEEEECSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-cCCEEEEcCccCcHHHHHhcCCccccccceEEEEeC--CCCeEEECCCChHHHHHHHH
Confidence 445688999999999999988 9999999999988641 12 12222 2222 4677888642 34455
Q ss_pred HHHhhc--CCCceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHH---HHHHHHH
Q 043787 121 QMLMVS--GFDKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDL---IRKIFLE 180 (452)
Q Consensus 121 q~Lm~~--g~~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~l---i~~i~~~ 180 (452)
..+... ---|+|||++|||+| ..+.. |..||+|.|+|....+.+++-..+..+ ...+++.
T Consensus 140 ~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~ 207 (458)
T 2i4l_A 140 AYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFAR 207 (458)
T ss_dssp HHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 443211 125999999999999 66666 889999999999887777665555544 5555543
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-07 Score=94.42 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----CccceeecccCCCceeeecCCHHHHHHHHhhc--
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVS-- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~-- 126 (452)
.-.+++..|.+.+|+.|.. .||.||.||+|.+..- .| ..+.+...+ .+..++|+-......=.+.+.
T Consensus 28 ~g~~~~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~--~~~~~~LrP~~~~~~~~~~~~~~ 104 (401)
T 1evl_A 28 DGWTIFRELEVFVRSKLKE-YQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQIFNQGL 104 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEE--TTEEEEECSCSHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCEEEECCeeccHHHHHhcCcHhhhchhhEeEec--CCceEEEcCCCCHHHHHHHHhhh
Confidence 3478899999999999988 9999999999988641 12 112222222 466778854332222121221
Q ss_pred -----CCCceEEEeeeeecCCC--CCC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 127 -----GFDKYYQIARCFRDEDL--RAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 127 -----g~~rvfqi~~~FR~E~~--~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
---|+||||+|||+|.+ +.. |..||+|.|+| +|.+.+++....++++.
T Consensus 105 ~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~e~i~ 161 (401)
T 1evl_A 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAH-IFCTEEQIRDEVNGCIR 161 (401)
T ss_dssp CBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEE-EEECGGGHHHHHHHHHH
T ss_pred hhhhhCChhhccccceecCCCCcccccccccCcEEecceE-EeCCHHHHHHHHHHHHH
Confidence 12599999999999986 555 88999999999 46666666655444443
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-06 Score=85.05 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-----C-----Cccce-eecccCCCceeeec--CCHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-----G-----ARDYL-VPSRVQPGTFYALP--QSPQLFKQ 121 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-----G-----a~~~~-v~~~~~~g~~~~L~--qSpQl~kq 121 (452)
+-.-.+.+..+.+.+|+.|.. .||.||.||++...+.= | ..+.+ ..++ .|+.+.|+ ..|++..-
T Consensus 32 lP~~~~~~~~i~~~i~~~~~~-~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~--~g~~l~LRpd~T~~~aR~ 108 (344)
T 1z7m_A 32 TLNQVKSLRQIEGRLRKLFSL-KNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH--EGQSITLRYDFTLPLVRL 108 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECT--TCCEEEECCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCEEecCcccCcHHHHhhccCCccccccccEEEEECC--CCCEEecCCCCcHHHHHH
Confidence 345578899999999999988 99999999999875310 1 12322 2222 46777785 23444433
Q ss_pred HHhh--cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCH
Q 043787 122 MLMV--SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPL 163 (452)
Q Consensus 122 ~Lm~--~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~ 163 (452)
.... ...-|+|+|++|||+|..+..|.-||+|+++|....+.
T Consensus 109 ~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 109 YSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESA 152 (344)
T ss_dssp HHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCH
T ss_pred HHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCC
Confidence 2211 12359999999999998888888999999999988754
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-06 Score=87.23 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---C-CCC---ccce-eecccCCCceeeecC--CHHHHHHHHhhc
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---P-EGA---RDYL-VPSRVQPGTFYALPQ--SPQLFKQMLMVS 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~-eGa---~~~~-v~~~~~~g~~~~L~q--SpQl~kq~Lm~~ 126 (452)
.-.+.+.+|.+.+|+.|.. .||.||.||+|.... . -|. .+.+ ..++ .|+.+.|+- .|++..-.....
T Consensus 18 ~~~~~~~~i~~~i~~~~~~-~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~--~g~~l~LrPd~t~~~aR~~~~~~ 94 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEA-FGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK--GGREVTLIPEATPSTVRMVTSRK 94 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT--TSCEEEECSCSHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEeeccccccHHHhhhccCCccccceEEEECC--CCCEEEeCCCChHHHHHHHHhcC
Confidence 4468899999999999988 999999999998853 1 121 2222 2232 477788852 344444332111
Q ss_pred ---CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 043787 127 ---GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 127 ---g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~ 180 (452)
..-|+|||++|||+|..+..|.-||+|.++|....+....-..+-.++..+++.
T Consensus 95 ~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~ 151 (434)
T 1wu7_A 95 DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDR 151 (434)
T ss_dssp TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 135999999999999888888899999999999875433322222444555544
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-06 Score=90.40 Aligned_cols=122 Identities=21% Similarity=0.237 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----Cccce-eecccCCCceeee-cCCHH----HHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----ARDYL-VPSRVQPGTFYAL-PQSPQ----LFK 120 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~~~~-v~~~~~~g~~~~L-~qSpQ----l~k 120 (452)
+-.-.+++.+|.+.+|+.|.. .||.||.||+|....- .| ..+.+ ...+ .++.++| |.+-+ +++
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~--~~~~~~LrP~~~~~~~~~~~ 119 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEK-IDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDR--NDRDYILGPTHEETFTELIR 119 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-TTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECT--TCCEEEECSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHHHhcCCccccchheEEEecC--CCCeEEEccccHHHHHHHHH
Confidence 345688999999999999988 9999999999987641 12 11222 2222 4677888 44433 444
Q ss_pred HHHhh--cCCCceEEEeeeeecCCCC-CC--CCcceeeeeeeecCCCHHHHHHHHHHH---HHHHHH
Q 043787 121 QMLMV--SGFDKYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLDDMLRLNEDL---IRKIFL 179 (452)
Q Consensus 121 q~Lm~--~g~~rvfqi~~~FR~E~~~-~~--r~~EFtqLe~e~~f~~~~dlm~~~E~l---i~~i~~ 179 (452)
..+.. .---|+||+++|||+|.+. .. |..||+|.|+|....+.+++...++.+ ...+++
T Consensus 120 ~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~ 186 (572)
T 2j3l_A 120 DEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFE 186 (572)
T ss_dssp HHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44211 1124999999999999884 33 789999999999888777776666554 444444
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.6e-06 Score=85.97 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CC------ccce-eecccCCCceeeec--CCHHHHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GA------RDYL-VPSRVQPGTFYALP--QSPQLFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga------~~~~-v~~~~~~g~~~~L~--qSpQl~kq~L 123 (452)
.-.+.+.++.+.+|+.|.. .||.||.||+|...+. . |. .+.+ ..++ .|+.+.|+ ..|++..-..
T Consensus 16 ~~~~~~~~i~~~i~~~~~~-~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~--~g~~l~Lrpd~t~~~aR~~~ 92 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGS-YGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR--NGDSLTLRPEGTAGCVRAGI 92 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT--TSCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC--CCCEEEeCCCchHHHHHHHH
Confidence 3467889999999999988 9999999999987531 1 22 1222 2233 47778885 2344443322
Q ss_pred hh----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 124 MV----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 124 m~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
.. ...-|+|||++|||+|..+..|.-||+|.|+|....+....-..+-.++..+++.+
T Consensus 93 ~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~l 154 (423)
T 1htt_A 93 EHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRAL 154 (423)
T ss_dssp HHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHC
Confidence 11 11359999999999998888888999999999998754332222224555555443
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-06 Score=89.39 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHH-hhcCCeEEEcCceEeecCC---CCC-----ccce-eecccCCCceeee-cCCHHHHHHHHhh
Q 043787 57 HNILLRHKVVKLIRRYL-EDVHGFVEIETPVLSRSTP---EGA-----RDYL-VPSRVQPGTFYAL-PQSPQLFKQMLMV 125 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff-~~~~gF~EV~TPiL~~~~~---eGa-----~~~~-v~~~~~~g~~~~L-~qSpQl~kq~Lm~ 125 (452)
.-.+++..|.+.+|+.+ .+ .||.||.||+|.+..- .|- .+.+ +..+...+..++| |.+-+-+-.+ ..
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~-~~ 139 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFK-FGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLI-FG 139 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHH-HT
T ss_pred cHHHHHHHHHHHHHHHHHHh-cCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHH-HH
Confidence 45788999999999999 88 9999999999987641 121 1222 2221112466788 4553333333 22
Q ss_pred cC-------CCceEEEeeeeecCCCC--CC--CCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 126 SG-------FDKYYQIARCFRDEDLR--AD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 126 ~g-------~~rvfqi~~~FR~E~~~--~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
.. --|+||+++|||+|.+. .. |..||+|.|++. |++.+++.+.+++++..+.
T Consensus 140 ~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~ 202 (460)
T 3uh0_A 140 KKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLID 202 (460)
T ss_dssp TSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred hccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHHH
Confidence 21 24899999999999885 44 889999999995 6766777776666554443
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.4e-06 Score=91.97 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC-----ccceeecccCCC-ceeeec-CCHHHHHHHHhh
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA-----RDYLVPSRVQPG-TFYALP-QSPQLFKQMLMV 125 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~v~~~~~~g-~~~~L~-qSpQl~kq~Lm~ 125 (452)
-.-.+++..+.+.+|+.+.. .||.||.||+|.+..- .|. .+.+.... ..+ +.|+|. .+-+-+..+. +
T Consensus 268 P~g~~~~~~l~~~ir~~~~~-~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~-~ 344 (645)
T 1nyr_A 268 PNGATIRREIERYIVDKEVS-MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIY-A 344 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHHHHHH-cCCEEEECCeeccHHHHhhCCCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHH-H
Confidence 45688999999999999988 9999999999987641 121 12222111 135 678884 3333333332 2
Q ss_pred cC-------CCceEEEeeeeecCCCCC--C--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 126 SG-------FDKYYQIARCFRDEDLRA--D--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 126 ~g-------~~rvfqi~~~FR~E~~~~--~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
.. --|+||||+|||+|.++. . |..||||.|+|. |.+.+.+.+.+.+++.
T Consensus 345 ~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~ 404 (645)
T 1nyr_A 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVN 404 (645)
T ss_dssp TSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHH
Confidence 11 249999999999998863 3 779999999997 6566655554444443
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-06 Score=87.87 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CCc------cce-eecccCCCceeeec-CC-HHHHH---
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GAR------DYL-VPSRVQPGTFYALP-QS-PQLFK--- 120 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga~------~~~-v~~~~~~g~~~~L~-qS-pQl~k--- 120 (452)
.-.+++..+.+.+|+.|.. .||.||.||+|..... . |.+ +.+ +.++ .|+.++|+ .+ |++..
T Consensus 14 ~~~~~~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~--~g~~~~Lrp~~t~~~~r~~~ 90 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTF-YNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK--GDRSITLRPEGTAAVVRSYI 90 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCEECBCCSEEEHHHHCC-----------CCEEECHH--HHCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEccCcccchHHHhhhccCCccchhhhheEEEEcC--CCCEEEeCCCChHHHHHHHH
Confidence 3468889999999999988 9999999999988541 1 221 222 2122 25567774 22 33322
Q ss_pred HHHhh---cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 121 QMLMV---SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 121 q~Lm~---~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
+.... ...-|+||+++|||+|..+..|..||+|+|+|..+.+
T Consensus 91 ~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 91 EHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp HTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCC
T ss_pred hccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCC
Confidence 21111 1236999999999999888888899999999998874
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.9e-06 Score=85.72 Aligned_cols=121 Identities=19% Similarity=0.276 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CC------ccce-eecccCCCceeeec--CCHHHHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GA------RDYL-VPSRVQPGTFYALP--QSPQLFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga------~~~~-v~~~~~~g~~~~L~--qSpQl~kq~L 123 (452)
.-.+.+.++.+.+|+-|.. .||.||.||++...+. . |. .+.+ ..++ .|+.+.|+ ..|++..-..
T Consensus 15 ~~~~~~~~i~~~i~~~~~~-~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~--~g~~l~Lrpd~t~~~ar~~~ 91 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEA-AGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR--GGRSLTLRPEGTAAMVRAYL 91 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEecccccccHHHhhhccCCcccccccceEEEECC--CCCEEeeCCcchHHHHHHHH
Confidence 3467889999999999988 9999999999987531 1 22 1222 2222 46777785 2344444322
Q ss_pred hh-----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 043787 124 MV-----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 124 m~-----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~ 180 (452)
.. .-.-|+|||++|||+|..+..|.-||+|.++|....+....-..+-.++..+++.
T Consensus 92 ~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~ 153 (421)
T 1h4v_B 92 EHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKE 153 (421)
T ss_pred hccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHH
Confidence 11 1136999999999999888888899999999998875433322333445555544
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-06 Score=88.04 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCCC-CCcc--ceeecccCCCce-----eee--cCCHHHHHHHHhhcCC--C
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE-GARD--YLVPSRVQPGTF-----YAL--PQSPQLFKQMLMVSGF--D 129 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e-Ga~~--~~v~~~~~~g~~-----~~L--~qSpQl~kq~Lm~~g~--~ 129 (452)
-+.+.+.||++|.. .||.|+.+|.+.+.... .+-. --.|.|.....+ -.| ++||.+-. . |..+- -
T Consensus 109 ~~~~~~~Ir~if~~-~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr-~-l~~~~~pi 185 (327)
T 3pco_A 109 VTRTIDRIESFFGE-LGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIR-T-MKAQQPPI 185 (327)
T ss_dssp HHHHHHHHHHHHHT-TTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHH-H-HTTCCSSC
T ss_pred HHHHHHHHHHHHHH-CCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHH-H-HHhCCCCe
Confidence 36678899999998 99999999998654311 1100 011212101111 134 56787643 3 34433 4
Q ss_pred ceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~~ 179 (452)
|+|++|+|||.+ .+.+|.|+|+|+|+.++. +++.++...+|.+++.++.
T Consensus 186 rifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 186 RIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp CBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred eEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999997 567777999999987774 5899999999999998863
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.6e-06 Score=86.65 Aligned_cols=128 Identities=12% Similarity=0.085 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC------ccce-eecccC--CCceeeec-CCHH----H
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA------RDYL-VPSRVQ--PGTFYALP-QSPQ----L 118 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa------~~~~-v~~~~~--~g~~~~L~-qSpQ----l 118 (452)
-.-.+++..|.+.+|+.|.. .||.||.||+|.+..- +++ .+.+ +..+.. .+..++|+ .|-+ +
T Consensus 41 P~g~~l~~~I~~~~r~~~~~-~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~ 119 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKE-TGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYM 119 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHH
Confidence 34578899999999999988 9999999999988752 122 1222 222200 04567784 4433 4
Q ss_pred HHHHHhhc-C-CCceEEEeeeeecCCCCCC--CCcceeeeeeeecCCCHHHHHHHHHHH---HHHHHHHhcCC
Q 043787 119 FKQMLMVS-G-FDKYYQIARCFRDEDLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDL---IRKIFLEIKDV 184 (452)
Q Consensus 119 ~kq~Lm~~-g-~~rvfqi~~~FR~E~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~l---i~~i~~~~~~~ 184 (452)
|++.+... . --|+||||+|||+|..... |.-||+|.|++..|++.++....+..+ ...++...+|+
T Consensus 120 ~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl 192 (477)
T 1hc7_A 120 WSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAI 192 (477)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55543221 1 2599999999999965445 889999999999999988887777766 45566333454
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.6e-06 Score=84.30 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCC---C---Cccce-eecccCCCceeeec--CCHHHHHHHHhh--
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPE---G---ARDYL-VPSRVQPGTFYALP--QSPQLFKQMLMV-- 125 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~e---G---a~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm~-- 125 (452)
.-.+.+..+...+|+.|.. .||.||.||++.....= | ..+.+ ..++ .|+.+.|+ ..|++..-....
T Consensus 22 ~~~~~~~~i~~~l~~~~~~-~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~--~g~~l~LRpd~T~~~aR~~~~~~~ 98 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINL-WGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQ--QGNTLVLRPDMTAPIARLVASSLK 98 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEETTTHHHHSSSCGGGSCEEECT--TSCEEEECSCSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeCCccccHHHHhhcCCccccceEEEECC--CCCEEEECCCCHHHHHHHHHhhcc
Confidence 4467889999999999988 99999999999765420 1 11222 2222 46777785 234444322111
Q ss_pred --cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 126 --SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 126 --~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
...-|+|++|+|||.|..+..|.-||+|+++|....+
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCC
T ss_pred cCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCC
Confidence 1235999999999999988888899999999998864
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=81.97 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC---C-ccce-eecccCCCceeeec--CCHHHHHHHHh--
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG---A-RDYL-VPSRVQPGTFYALP--QSPQLFKQMLM-- 124 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG---a-~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm-- 124 (452)
.-.+.+..+...+|+.|.. .||.||.||++...+. .| . .+.+ ..+ ..|+.+.|+ ..|++..-...
T Consensus 35 ~~~~~~~~i~~~i~~~f~~-~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D--~~g~~l~LRpd~T~~~aR~~~~~~ 111 (373)
T 3rac_A 35 DFAKRRRAVETRLLSFVED-AGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFD--GGGDAVALRPEMTPSIARMAAPRV 111 (373)
T ss_dssp THHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCC--CSSSCEEECSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCeEEECCceeeHHHHhhcCCccchhceEEEEC--CCCCEEEECCcCHHHHHHHHHhcc
Confidence 3467889999999999988 9999999999977531 11 1 2222 112 246777785 23444432211
Q ss_pred --hcCCCceEEEeeeeecCCC------CCCCCcceeeeeeeecCCC
Q 043787 125 --VSGFDKYYQIARCFRDEDL------RADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 125 --~~g~~rvfqi~~~FR~E~~------~~~r~~EFtqLe~e~~f~~ 162 (452)
....-|+|++++|||+|.. +..|.-||+|+++|....+
T Consensus 112 ~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 112 AAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEE 157 (373)
T ss_dssp HTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSC
T ss_pred ccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCC
Confidence 1235799999999999988 6677789999999998765
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.1e-06 Score=86.11 Aligned_cols=105 Identities=17% Similarity=0.298 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---C-CC------ccce-eecccCC-Cceeeec--CCHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---E-GA------RDYL-VPSRVQP-GTFYALP--QSPQLFK 120 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---e-Ga------~~~~-v~~~~~~-g~~~~L~--qSpQl~k 120 (452)
+-.-.+++..+.+.+|+.|.. .||.||.||+|..... . |. .+.+ ...+ . |+.++|+ ..|++..
T Consensus 42 lP~~~~~~~~l~~~i~~~~~~-~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~--~~g~~l~LRPd~t~~~ar 118 (467)
T 4e51_A 42 LPQDAGLWEFFEATVKSLLRA-YGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDA--LNGENLTLRPENTAAVVR 118 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECT--TTCCEEEECSCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCEEEECCccccHHHhhhccCCcccccccceEEEecC--CCCCEEEeCcccHHHHHH
Confidence 344578899999999999988 9999999999987542 1 22 1222 2222 4 7778885 3344443
Q ss_pred HHHh---h-cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 121 QMLM---V-SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 121 q~Lm---~-~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
-... . ...-|+|++++|||.|.++..|.-||||+++|....+
T Consensus 119 ~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 119 AAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFA 164 (467)
T ss_dssp HHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCC
T ss_pred HHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCC
Confidence 2211 0 1135999999999999988888899999999998763
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=85.60 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCCc------cce-eecccCC--Cceeee-cCCHH----H
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGAR------DYL-VPSRVQP--GTFYAL-PQSPQ----L 118 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa~------~~~-v~~~~~~--g~~~~L-~qSpQ----l 118 (452)
-.-.+++..|.+.+|+.+.+ .||.||.||+|.+.. .+.++ +.+ +...... +..++| |+|-. +
T Consensus 58 P~G~~i~~~L~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~ 136 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKK-LGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPA 136 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHH
Confidence 34578899999999999988 999999999997764 12121 222 2221000 235778 56643 3
Q ss_pred HHHHHhhc-C-CCceEEEeeeeecCCCC-CC--CCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 119 FKQMLMVS-G-FDKYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 119 ~kq~Lm~~-g-~~rvfqi~~~FR~E~~~-~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
|++.+... . --|+||+++|||.|.+. .. |..||+|.|.+..|++.++..+.++.++..
T Consensus 137 ~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 137 YAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp HHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 44432211 1 35899999999999443 33 778999999999999999998888877654
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=8.1e-06 Score=85.52 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CC-----Cccce-eecccC--CCceeeec-CCHHHHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EG-----ARDYL-VPSRVQ--PGTFYALP-QSPQLFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eG-----a~~~~-v~~~~~--~g~~~~L~-qSpQl~kq~L 123 (452)
.-.+++..|.+.+|+.|.. .||.||.||+|.+... .| +.+.+ +..+.. .+..++|+ .|-+-+-.+.
T Consensus 36 ~g~~l~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~ 114 (459)
T 1nj8_A 36 YGFKIRRYTFEIIRNLLDE-SGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMM 114 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHH
Confidence 4478899999999999988 9999999999987541 12 12323 222100 14567784 4544332221
Q ss_pred ----hhc-C-CCceEEEeeeeecCCC-CCC--CCccee-eeeeeecCCCHHHHHHHHHHHHH
Q 043787 124 ----MVS-G-FDKYYQIARCFRDEDL-RAD--RQPEFT-QLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 124 ----m~~-g-~~rvfqi~~~FR~E~~-~~~--r~~EFt-qLe~e~~f~~~~dlm~~~E~li~ 175 (452)
... . --|+||||+|||+|.. ... |.-||+ |.|.+..+++.++....+++++.
T Consensus 115 ~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 115 KLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp HTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 111 1 2499999999999987 445 888999 99999999988887776544443
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4.9e-06 Score=87.09 Aligned_cols=118 Identities=17% Similarity=0.251 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCcccee--ecccCCCceeeec-CCHHHHHHHHhhc----
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGARDYLV--PSRVQPGTFYALP-QSPQLFKQMLMVS---- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~~~~v--~~~~~~g~~~~L~-qSpQl~kq~Lm~~---- 126 (452)
.-.+++.+|.+.+++.+.+ .||.||.||+|.+..- .|--+-+. .+.+ .+..++|. +|-+-+..+ ...
T Consensus 191 ~ga~l~~aL~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-~d~~l~LrPt~e~~~~~~-~~~~~~s 267 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIE-KGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKV-EDEDLYLIPTAEHPLAGM-HANEILD 267 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEEEECCSEECHHHHHTTSCTTHHHHTCCBB-TTSSCEECSSTHHHHHHT-TTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeCCcccCHHHHHhcCCCCCChHhhCee-cCCcEEEcCcCcHHHHHH-HHhCccC
Confidence 4578889999999999977 9999999999988641 23211110 1111 23445674 443333322 221
Q ss_pred --C-CCceEEEeeeeecCCCCCC-------CCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 127 --G-FDKYYQIARCFRDEDLRAD-------RQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 --g-~~rvfqi~~~FR~E~~~~~-------r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
. --|+|++++|||+|.+... |..||+|.|+. .|++.++..+..++++..+.
T Consensus 268 ~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~~ 328 (455)
T 2dq0_A 268 GKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNAE 328 (455)
T ss_dssp TTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHHH
T ss_pred chhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHHH
Confidence 1 2589999999999986432 78899999998 67766777777777765443
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=83.54 Aligned_cols=104 Identities=24% Similarity=0.415 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC--C--CC---ccce-eecccCCCceeeec--CCHHHHHHHHh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP--E--GA---RDYL-VPSRVQPGTFYALP--QSPQLFKQMLM 124 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~--e--Ga---~~~~-v~~~~~~g~~~~L~--qSpQl~kq~Lm 124 (452)
+-.-.++|..+...+|+.|.. .||.||.||++...+. . |. .+.+ ..++ .|+.+.|+ ..|++..-..
T Consensus 39 lP~~~~~~~~i~~~i~~~~~~-~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~--~g~~l~LRpd~T~~~aR~~~- 114 (456)
T 3lc0_A 39 PPEAMRCRRHLFDVFHATAKT-FGFEEYDAPVLESEELYIRKAGEEITEQMFNFITK--GGHRVALRPEMTPSLARLLL- 114 (456)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECS--SSCEEEECSCSHHHHHHHHH-
T ss_pred CHhHHHHHHHHHHHHHHHHHH-CCCEEEECCcEeehhhhccccccchhhceEEEEcC--CCCEEecCCcCHHHHHHHHH-
Confidence 334568899999999999988 9999999999987652 1 21 1222 2222 46777785 2344444332
Q ss_pred hcC-----CCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 125 VSG-----FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 125 ~~g-----~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
..+ .-|.|++|+|||.|..+..|.-||+|+++|..+.+
T Consensus 115 ~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 115 GKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp HSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCC
T ss_pred hcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCC
Confidence 222 35899999999999988888899999999998863
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=5.6e-06 Score=90.22 Aligned_cols=116 Identities=18% Similarity=0.245 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC-----ccceeecccCCCceeeec-CCHHHHHHHHhhc
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA-----RDYLVPSRVQPGTFYALP-QSPQLFKQMLMVS 126 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~v~~~~~~g~~~~L~-qSpQl~kq~Lm~~ 126 (452)
-.-.+++..|.+.+|+.+.+ .||.||.||+|.+..- .|- .+.+...+ .++.|+|. .+-+-+..+. ..
T Consensus 268 P~g~~l~~~l~~~~r~~~~~-~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~--~~~~~~LrP~~~~~~~~~~-~~ 343 (642)
T 1qf6_A 268 NDGWTIFRELEVFVRSKLKE-YQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQIF-NQ 343 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE--TTEEEEECSSSHHHHHHHH-TT
T ss_pred CcHHHHHHHHHHHHHHHHHH-cCCEEEECCcCccHHHHhhcCccccccccceeeec--CCceEEecCCCCHHHHHHH-Hh
Confidence 34578999999999999988 9999999999987641 121 12233222 35667784 4433333332 21
Q ss_pred C-------CCceEEEeeeeecCCC--CCC--CCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 127 G-------FDKYYQIARCFRDEDL--RAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 127 g-------~~rvfqi~~~FR~E~~--~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
. --|+||||+|||+|.+ +.. |.-||||.|++. |.+.+++...+++++..
T Consensus 344 ~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~ 403 (642)
T 1qf6_A 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRL 403 (642)
T ss_dssp SCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred hhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHH
Confidence 1 2499999999999988 444 889999999997 66666666665555443
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.11 E-value=7e-06 Score=86.09 Aligned_cols=105 Identities=24% Similarity=0.256 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC-----CCCCcc-ce-eeccc--C-----------CCceeeec--
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-----PEGARD-YL-VPSRV--Q-----------PGTFYALP-- 113 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-----~eGa~~-~~-v~~~~--~-----------~g~~~~L~-- 113 (452)
-.-.+.|..+...+|+.|.. .||.||.||++...+ .+...+ .+ ...+. . .|+.+.|+
T Consensus 23 P~~~~~~~~i~~~l~~~~~~-~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd 101 (465)
T 3net_A 23 PSEKRLELYLLDTIRRVYES-YGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFD 101 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCC
Confidence 34567889999999999988 999999999995432 222233 33 22221 0 25667785
Q ss_pred CCHHHHHHHHhh----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCC
Q 043787 114 QSPQLFKQMLMV----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT 161 (452)
Q Consensus 114 qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~ 161 (452)
..|++..-...- ...-|.|++|+|||.|..+..|.-||+|+++|..+.
T Consensus 102 ~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~ 153 (465)
T 3net_A 102 QTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGR 153 (465)
T ss_dssp SHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECS
T ss_pred ChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECC
Confidence 234443322111 123599999999999998888889999999999886
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=85.54 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC------ccce-eecccC--CCceeee-cCCHH----H
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA------RDYL-VPSRVQ--PGTFYAL-PQSPQ----L 118 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa------~~~~-v~~~~~--~g~~~~L-~qSpQ----l 118 (452)
-.-.+++..|.+.+|+.+.+ .||.||.||+|.+..- +.+ .+.+ +..+.. .+..++| |+|-+ +
T Consensus 52 P~G~~i~~~L~~~~~~~~~~-~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 52 PYGFFMENAIMRLCEEEYAK-VGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH-cCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 45578899999999999988 9999999999987652 222 1333 222200 1356778 45533 3
Q ss_pred HHHHHhhc-C-CCceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHHH
Q 043787 119 FKQMLMVS-G-FDKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 119 ~kq~Lm~~-g-~~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~ 175 (452)
|++.+... . --|+||+++|||+| ..... |..||+|.|.+..+++.+++.+.++.|+.
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~ 192 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWK 192 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHH
Confidence 33332111 1 24899999999999 44444 88899999999988999999988888874
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-05 Score=81.25 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCCcc-cee-ecccCCCceeeecCCHHHHHHHHhhc------
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGARD-YLV-PSRVQPGTFYALPQSPQLFKQMLMVS------ 126 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa~~-~~v-~~~~~~g~~~~L~qSpQl~kq~Lm~~------ 126 (452)
-.+++.+|.+.+++.+.+ .||.||.||+|.+... .|--+ |-. .+.+ .+..++|.-..+...-.++..
T Consensus 165 ga~l~~aL~~~~~~~~~~-~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-~d~~l~L~Pt~e~~~~~~~~~~~~s~~ 242 (421)
T 1ses_A 165 LALYELALLRFAMDFMAR-RGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI-AETDLYLTGTAEVVLNALHSGEILPYE 242 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB-TTSSEEECSSTHHHHHHTTTTCEEEGG
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEeCCceecHHHHHhcCCCCcCchhcEEE-cCCeEEEeecCcHHHHHHhcccccCch
Confidence 478899999999999987 9999999999987641 12111 110 0111 134456743333222222221
Q ss_pred -CCCceEEEeeeeecCCCC-----CC--CCcceeeeeeeecCCC-HHHHHHHHHHHHHHH
Q 043787 127 -GFDKYYQIARCFRDEDLR-----AD--RQPEFTQLDMELAFTP-LDDMLRLNEDLIRKI 177 (452)
Q Consensus 127 -g~~rvfqi~~~FR~E~~~-----~~--r~~EFtqLe~e~~f~~-~~dlm~~~E~li~~i 177 (452)
---|+|++++|||+|.+. .. |..||+|+|++..... .++..+..++++..+
T Consensus 243 ~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 243 ALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp GCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred hCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 124999999999999632 22 7799999998765444 477777666666543
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=83.83 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C--CC-----ccceeecccCCCceeee-cCCHHHHHHHHhhcC
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E--GA-----RDYLVPSRVQPGTFYAL-PQSPQLFKQMLMVSG 127 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e--Ga-----~~~~v~~~~~~g~~~~L-~qSpQl~kq~Lm~~g 127 (452)
.-.+++.++.+.+|+.+.+ .||.||.||.|.+... + |- .+.+.. .+..||| ++|=+-+-.+ ....
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~-~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~----~~~~~~L~PT~E~~~~~l-~~~~ 346 (536)
T 3err_A 273 DLALYELALLRFAMDFMAR-RGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI----AETDLYLTGTAEVVLNAL-HSGE 346 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEE----TTTTEEECSSTHHHHHHH-TTTC
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeccccccHHHHHhcCCcccChhhceEe----cCCCEEEccCCcHHHHHH-Hhcc
Confidence 3578899999999999988 9999999999987642 1 21 122211 1234567 5554433333 2211
Q ss_pred -------CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHH--HHHHHHHHHHHHH
Q 043787 128 -------FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLD--DMLRLNEDLIRKI 177 (452)
Q Consensus 128 -------~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~--dlm~~~E~li~~i 177 (452)
--|+|++++|||+|.+.+ -|..||+|.|++ +|+..+ +..+..++|+...
T Consensus 347 i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~-~f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 347 ILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQY-VLTEASLEASDRAFQELLENA 411 (536)
T ss_dssp EEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEE-EEECSCHHHHHHHHHHHHHHH
T ss_pred cccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEE-EEECCchHHHHHHHHHHHHHH
Confidence 248999999999997421 377899999997 565444 7888887777544
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=82.40 Aligned_cols=123 Identities=16% Similarity=0.259 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC-----ccceeecccCCCceeeec-CC-HH---HHHHHHh
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA-----RDYLVPSRVQPGTFYALP-QS-PQ---LFKQMLM 124 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa-----~~~~v~~~~~~g~~~~L~-qS-pQ---l~kq~Lm 124 (452)
-.+++..|.+.+|+.|.. .||.||.||+|.... ..|. .+.+..++ .|+.++|+ .+ |. +|++.+.
T Consensus 48 g~~~~~~i~~~~~~~~~~-~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~--~~~~l~LRP~~t~~i~~~~~~~~~ 124 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHAR-RGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDI--EGHEFAVKPMNCPYHILLFLNEVA 124 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEE--TTEEEEECSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCEEEECCeeeehHHhhhccCccccccceEEEec--CCcEEEEccccHHHHHHHHHhhhh
Confidence 468899999999999988 999999999998864 1221 12232222 46777884 33 22 3333322
Q ss_pred hc----C-CCceEEEeeeeecCCCC--CC--CCcceeeeeeeecCCCHHHHHHH---HHHHHHHHHHHhcCC
Q 043787 125 VS----G-FDKYYQIARCFRDEDLR--AD--RQPEFTQLDMELAFTPLDDMLRL---NEDLIRKIFLEIKDV 184 (452)
Q Consensus 125 ~~----g-~~rvfqi~~~FR~E~~~--~~--r~~EFtqLe~e~~f~~~~dlm~~---~E~li~~i~~~~~~~ 184 (452)
.. . --|+||+|+|||+|.+. .. |.-||+|.|+|.... .+...+. +-.+...++..++|+
T Consensus 125 s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~-~~~~~de~~e~i~~~~~~l~~~lGl 195 (471)
T 3a32_A 125 KHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP-GGRVIDVVYDVFEEMKLVLERLFKL 195 (471)
T ss_dssp HHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE-GGGHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC-hHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 21 2 36999999999999876 55 889999999998753 3333333 333444555553555
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.3e-05 Score=81.59 Aligned_cols=116 Identities=25% Similarity=0.357 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEcC-ceEeecC--------CC--CCcc----ceeeccc-C------------------
Q 043787 60 LLRHKVVKLIRRYLEDVHGFVEIET-PVLSRST--------PE--GARD----YLVPSRV-Q------------------ 105 (452)
Q Consensus 60 ~~Rs~i~~~iR~ff~~~~gF~EV~T-PiL~~~~--------~e--Ga~~----~~v~~~~-~------------------ 105 (452)
--.+++.+.||++|.. .||.||.| |.+..+- |+ .||+ |.+.... .
T Consensus 225 HPl~~v~~~Ir~if~~-mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 225 HPLLKVRSQFRQIFLE-MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CHHHHHHHHHHHHHHH-TTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHH-CcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 3347788899999998 99999875 8776641 22 2332 2221100 0
Q ss_pred ----CC----------ceeeec--CCHHHHHHHHh--h-c--CCCceEEEeeeeecCCCCCCCCcceeeeeeeecC--CC
Q 043787 106 ----PG----------TFYALP--QSPQLFKQMLM--V-S--GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TP 162 (452)
Q Consensus 106 ----~g----------~~~~L~--qSpQl~kq~Lm--~-~--g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~ 162 (452)
.| ..-.|+ +||.+-.-+.- . . .--|+|+||+|||.|..+++|.|+|+|+|..++. ++
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~ 383 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLT 383 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCC
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCC
Confidence 00 122354 44655433311 1 1 2358999999999999999899999999998775 58
Q ss_pred HHHHHHHHHHHHHH
Q 043787 163 LDDMLRLNEDLIRK 176 (452)
Q Consensus 163 ~~dlm~~~E~li~~ 176 (452)
+.+++.+++.+++.
T Consensus 384 f~dLKg~Le~~l~~ 397 (508)
T 3l4g_A 384 LGHLMGVLREFFTK 397 (508)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887764
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.8e-05 Score=81.40 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=38.6
Q ss_pred CceEEEeeeeecC-CCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDE-DLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 129 ~rvfqi~~~FR~E-~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i 177 (452)
-|+|||++|||+| ..+.. |.-||+|.|++ .|++.++..+..+.++...
T Consensus 210 ~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~~ 260 (505)
T 1ati_A 210 FGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEER 260 (505)
T ss_dssp EEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHHH
T ss_pred EEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHHH
Confidence 5999999999999 55544 88899999999 8888888776666666543
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.1e-05 Score=83.34 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC---CCCC------ccce-eecccC--CCceeeec-CCHH----H
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST---PEGA------RDYL-VPSRVQ--PGTFYALP-QSPQ----L 118 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~---~eGa------~~~~-v~~~~~--~g~~~~L~-qSpQ----l 118 (452)
-.-.+++..|.+.+|+.| .. ||.||.||+|.+.. .+.+ .+.+ +..+.. .+..++|. +|-+ +
T Consensus 68 P~g~~l~~~i~~~~~~~~-~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~ 145 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRIL-DR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-Hc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHH
Confidence 345788899999999999 65 99999999998864 2111 1222 222100 03556774 4433 3
Q ss_pred HHHHHhhc-C-CCceEEEeeeeecCCC-CCC--CCccee-eeeeeecCCCHHHHHHHHHHHHHH
Q 043787 119 FKQMLMVS-G-FDKYYQIARCFRDEDL-RAD--RQPEFT-QLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 119 ~kq~Lm~~-g-~~rvfqi~~~FR~E~~-~~~--r~~EFt-qLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
|++.+... . --|+||+++|||+|.. ... |..||+ |.|++..|++.++....+++++..
T Consensus 146 ~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 146 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp HHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 34332211 1 2499999999999987 344 888999 999999999988888877666543
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=83.75 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc-------cce-eecccCCCceeee-cCCHHHHHHHHhhc
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR-------DYL-VPSRVQPGTFYAL-PQSPQLFKQMLMVS 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~-------~~~-v~~~~~~g~~~~L-~qSpQl~kq~Lm~~ 126 (452)
.-.+++.++.+.+++.+.+ +||.||.||.|.+... ++.+ +.+ +.. .+..||| ++|=+-+-.+ ...
T Consensus 206 ~GarL~~aL~~f~~d~~~~-~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~---~~~~~~L~PTaE~~l~~l-~~~ 280 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVK-RGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSG---DGDKKYLIATSEMPIAAY-HRG 280 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEES---SSSCEEECSSTHHHHHHH-TTT
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEecCccccHHHHHhcCCcccccccceEeec---CCcceEEeccCcHHHHHH-Hhc
Confidence 4578999999999999987 9999999999998652 1211 222 221 1445677 4553333222 221
Q ss_pred C-------CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHH--HHHHHHHHHHHH
Q 043787 127 G-------FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDD--MLRLNEDLIRKI 177 (452)
Q Consensus 127 g-------~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~d--lm~~~E~li~~i 177 (452)
. --|+|++++|||+|.+.. -|..||+|.|++ +|+..++ ..+..++|+...
T Consensus 281 ~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~-~f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 281 RWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQF-VVCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp CEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEE-EEECSSTTHHHHHHHHHHHHH
T ss_pred cccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEE-EEeCcchHHHHHHHHHHHHHH
Confidence 1 247999999999997321 377899999996 5665555 777777776543
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-05 Score=80.27 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----Cc-cceeecccCCCceeeecCCHHHHHHHHhhc
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----AR-DYLVPSRVQPGTFYALPQSPQLFKQMLMVS 126 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~-~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~ 126 (452)
..-.+++.++.+.+++.+.+ .||.||.||.|.+... .| .. +.+.... ..+..|||.-..+...=.+...
T Consensus 216 p~GarL~~aL~~~~~d~~~~-~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~-~~~~~l~L~PTaE~~~~~l~~~ 293 (501)
T 1wle_A 216 GAGALLQHGLVNFTLNKLIH-RGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP-SRFEDLNLAGTAEVGLAGYFMD 293 (501)
T ss_dssp THHHHHHHHHHHHHHHHHHH-TTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT-TTSSSCEECSSHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHH-cCCEEEeCCccccHHHHHhhcCCCccCccccEEEec-CCCCeEEECCcCcHHHHHHHhh
Confidence 34578889999999999987 9999999999998642 12 11 3222111 1134566754443332222221
Q ss_pred -------CCCceEEEeeeeecCCC------CCCCCcceeeeeeeecCCCH-HHHHHHHHHHHHHHH
Q 043787 127 -------GFDKYYQIARCFRDEDL------RADRQPEFTQLDMELAFTPL-DDMLRLNEDLIRKIF 178 (452)
Q Consensus 127 -------g~~rvfqi~~~FR~E~~------~~~r~~EFtqLe~e~~f~~~-~dlm~~~E~li~~i~ 178 (452)
---|+|++++|||+|.+ +--|..||+|.|++..-.+. ++..+..++|+....
T Consensus 294 ~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~ 359 (501)
T 1wle_A 294 HSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQM 359 (501)
T ss_dssp EEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 12489999999999976 12377899999997654444 688888888775433
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.8e-05 Score=77.52 Aligned_cols=103 Identities=24% Similarity=0.369 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCCccce-eecccCCCceeeecC--CHHHHHHHHhh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGARDYL-VPSRVQPGTFYALPQ--SPQLFKQMLMV 125 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa~~~~-v~~~~~~g~~~~L~q--SpQl~kq~Lm~ 125 (452)
+-.-.+.|..+.+.+|+.|.. .||.||.||+|.... .+...+.+ ..++ .|+.+.|+- .+++-.-.. .
T Consensus 24 lP~~~~~~~~i~~~~~~~~~~-~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~--~g~~l~LRPd~T~~~aR~~~-~ 99 (464)
T 4g84_A 24 SPRQMAVREKVFDVIIRCFKR-HGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQ--GGELLSLRYDLTVPFARYLA-M 99 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHTTSCC----CCCBBCCC--SSCCEEECSCSHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHH-CCCeEEECcccCcHHHhccccCcCcceeEEEECC--CCCEEEeCCcCcHHHHHHHH-h
Confidence 445578899999999999988 999999999997642 11112222 2222 467777862 344433221 1
Q ss_pred c--CCCceEEEeeeeecCCCCC--CCCcceeeeeeeecCC
Q 043787 126 S--GFDKYYQIARCFRDEDLRA--DRQPEFTQLDMELAFT 161 (452)
Q Consensus 126 ~--g~~rvfqi~~~FR~E~~~~--~r~~EFtqLe~e~~f~ 161 (452)
. .--|.|+|++|||.|..+. .|.-||+|+++|..+.
T Consensus 100 ~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 100 NKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp TTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred cCCCCceeEEEecceeccCCccccCccceeeecceeccCC
Confidence 1 1358999999999997643 4667999999999874
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.89 E-value=3.3e-05 Score=81.18 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC-----ccce-eecccCCCceeee-cCCHHHHHHHHhhc
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA-----RDYL-VPSRVQPGTFYAL-PQSPQLFKQMLMVS 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~-v~~~~~~g~~~~L-~qSpQl~kq~Lm~~ 126 (452)
.-.+++.++.+.+++.+.+ .||.||.||.|.+... .|- .+.+ +..+ +..+|| ++|=.-.- .++..
T Consensus 183 ~GarL~~aL~~~~~d~~~~-~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~---~~~~~LipTaE~pl~-~l~~~ 257 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSS-KGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG---EDEKYLIATSEQPIS-AYHAG 257 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET---TEEEEECSSTHHHHH-HHTTT
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEeCCccccHHHHhhcCCccccccceEEEeCC---CCeEEEeccccHHHH-HHHhc
Confidence 4578899999999999987 9999999999998652 121 1222 2221 334555 55533222 22222
Q ss_pred C---------CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHHH
Q 043787 127 G---------FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 127 g---------~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i 177 (452)
- --|+|++++|||+|.+.. -|..||+|.|++. |++.++..+..++|+...
T Consensus 258 ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 258 EWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp CEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred cccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 1 247999999999997541 3778999999975 677788888888777543
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.9e-05 Score=81.21 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CC-----Cccce-eeccc------CCCceeee-cCCHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EG-----ARDYL-VPSRV------QPGTFYAL-PQSPQLFK 120 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eG-----a~~~~-v~~~~------~~g~~~~L-~qSpQl~k 120 (452)
.-.+++.++++.+++.+.+ .||.||.||.|.+... .| ..+.+ +..+. ..+..||| ++|=+-+.
T Consensus 199 ~GarL~raL~~f~~d~~~~-~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~ 277 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGS-RGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIA 277 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHH
Confidence 3478899999999999987 9999999999987642 12 11222 22110 01334667 45533332
Q ss_pred HHHhhc------C-CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecCCCHHH--HHHHHHHHHHHH
Q 043787 121 QMLMVS------G-FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDD--MLRLNEDLIRKI 177 (452)
Q Consensus 121 q~Lm~~------g-~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~d--lm~~~E~li~~i 177 (452)
.+ ... . --|+|++++|||+|.+.. -|..||+|.|+. +|++.++ ..+..++|+...
T Consensus 278 ~l-~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~-~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 278 AL-HRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQF-VYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp TT-STTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEE-EEECSSTTHHHHHHHHHHHHH
T ss_pred HH-HhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEE-EEeCCChHHHHHHHHHHHHHH
Confidence 22 111 1 247999999999998532 377899999997 5554443 777777766543
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=9.8e-05 Score=78.25 Aligned_cols=105 Identities=26% Similarity=0.359 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCCccce-eecccCCCceeeecC--CHHHHHHHHh
Q 043787 54 QMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGARDYL-VPSRVQPGTFYALPQ--SPQLFKQMLM 124 (452)
Q Consensus 54 ~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa~~~~-v~~~~~~g~~~~L~q--SpQl~kq~Lm 124 (452)
.+-.-.++|..|.+.+|+.|.. .||.||.||++.... .+.....+ ..+ ..|+.+.|+- .+++-.-...
T Consensus 76 ~lP~~~~~~~~ie~~i~~~~~~-~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D--~~g~~l~LRPd~T~~~aR~~~~ 152 (517)
T 4g85_A 76 YSPRQMAVREKVFDVIIRCFKR-HGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD--QGGELLSLRYDLTVPFARYLAM 152 (517)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHH-HTCEECBCCSEEEHHHHHCC------CSCBBCC--TTSCCEEECSCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-CCCeEEECcccCcHHHhhcccCcCcceeEEEEC--CCCCEEEeCCcCcHHHHHHHHh
Confidence 3455688999999999999988 999999999997642 11112211 122 2477777862 3333332111
Q ss_pred hc-CCCceEEEeeeeecCCCCC--CCCcceeeeeeeecCC
Q 043787 125 VS-GFDKYYQIARCFRDEDLRA--DRQPEFTQLDMELAFT 161 (452)
Q Consensus 125 ~~-g~~rvfqi~~~FR~E~~~~--~r~~EFtqLe~e~~f~ 161 (452)
.. .--|.|+||+|||.|..+. .|.-||+|+++|..+.
T Consensus 153 ~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 153 NKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp TTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred CCCCCceeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 10 1358999999999997643 5668999999999874
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.73 E-value=3.6e-05 Score=81.68 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcCCeEEEcCceEeecCC---CCC-----ccce-ee--c-cc------------------
Q 043787 56 NHNILLRHKVVKLIRR-YLEDVHGFVEIETPVLSRSTP---EGA-----RDYL-VP--S-RV------------------ 104 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~-ff~~~~gF~EV~TPiL~~~~~---eGa-----~~~~-v~--~-~~------------------ 104 (452)
-.-.+++.+|.+.+++ ++.. .||.||.||+|.+... .|- .+.+ +. . +.
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~-~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~ 306 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEP-LGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVP 306 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH-HTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCC
T ss_pred chHHHHHHHHHHHHHHHHHHH-cCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccc
Confidence 3456788999999996 5766 9999999999987641 111 1222 21 0 10
Q ss_pred -------CCCceeeecC-CHH----HHHHHHhhc-C-CCceEE-EeeeeecCCCC----CCCCcceeeeeeeecCCCHHH
Q 043787 105 -------QPGTFYALPQ-SPQ----LFKQMLMVS-G-FDKYYQ-IARCFRDEDLR----ADRQPEFTQLDMELAFTPLDD 165 (452)
Q Consensus 105 -------~~g~~~~L~q-SpQ----l~kq~Lm~~-g-~~rvfq-i~~~FR~E~~~----~~r~~EFtqLe~e~~f~~~~d 165 (452)
..+..++|.- +-+ +|+..+... . --|+|| +++|||+| .+ --|..||+|.|++. |.+.++
T Consensus 307 ~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 307 TKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp HHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred ccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 0244567742 211 122111111 1 238999 99999999 44 25889999999997 778888
Q ss_pred HHHHHHHHH
Q 043787 166 MLRLNEDLI 174 (452)
Q Consensus 166 lm~~~E~li 174 (452)
..+..++++
T Consensus 385 s~ee~ee~i 393 (522)
T 2cja_A 385 VLKCAEELH 393 (522)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888888
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=71.81 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=60.9
Q ss_pred HHHHH--HHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeec--CCHHHHHHHHhh-c-CCCceEEEeeeee
Q 043787 66 VKLIR--RYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALP--QSPQLFKQMLMV-S-GFDKYYQIARCFR 139 (452)
Q Consensus 66 ~~~iR--~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~-~-g~~rvfqi~~~FR 139 (452)
.+.+| +.|.. .||.||.||++...+.=.. +.+. . ..|+.+.|+ -.|+.....+-. . ..-|+|++|+|||
T Consensus 7 e~~~r~~~~~~~-~Gy~eI~tP~le~~~l~~~-d~f~-d--~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR 81 (275)
T 1usy_A 7 EKVFSFYSKATK-KGFSPFFVPALEKAEEPAG-NFFL-D--RKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYR 81 (275)
T ss_dssp HHHHHHHHHHHH-TTCEECCCCSEEECSSCCS-SCEE-E--TTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEE
T ss_pred HHHHHHHHHHHH-CCCEEecCccccchhhhcc-cccC-C--CCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEe
Confidence 34444 88888 9999999999987653222 2222 2 257778885 224444333211 1 2369999999999
Q ss_pred cCCCCCCCCcceeeeeeeecCCC
Q 043787 140 DEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 140 ~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
.|.++. -||||+++|....+
T Consensus 82 ~e~~~~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 82 YSGSDL---VAEYQLGLEKVPRN 101 (275)
T ss_dssp EETTEE---EEEEEEEEEEESCC
T ss_pred cCCCCC---CeeeEeCEEEecCC
Confidence 998777 79999999998863
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00028 Score=70.86 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc-------c-ceeeccc----------------------CC
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR-------D-YLVPSRV----------------------QP 106 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~-------~-~~v~~~~----------------------~~ 106 (452)
.-+++..+.+.+|+ ..+ .||.||.||.|.+..- ++.+ . |.+.+.. ..
T Consensus 63 ~a~L~~aLe~~~~~-~~~-~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~ 140 (346)
T 3mf2_A 63 YESIVERLAALITS-HRE-AGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLS 140 (346)
T ss_dssp HHHHHHHHHHHHHH-TCC-TTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEE
T ss_pred HHHHHHHHHHHHHh-hHh-cCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccC
Confidence 45778888899999 766 9999999999987642 2221 1 2221110 01
Q ss_pred Cceeeec-CC----HHHHHHH-HhhcCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 107 GTFYALP-QS----PQLFKQM-LMVSGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 107 g~~~~L~-qS----pQl~kq~-Lm~~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
+..|||. ++ -++|.+- .+...--|+-.+++|||.|.+ +--|..+|+|.|+- .|++.+++.+..|+|+..+..
T Consensus 141 ~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v-~~~tpEqs~~e~e~l~~~ae~ 219 (346)
T 3mf2_A 141 PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYV-CIGTPDDVSDFRERWMVRAQA 219 (346)
T ss_dssp EEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEE-EEESHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEE-EEeCHHHHHHHHHHHHHHHHH
Confidence 2356773 32 2556532 122333577779999999987 45688999999874 456899999999999876543
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00014 Score=77.99 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred eec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. ..--|+|++|+|||.+.. +..|.+||+||+.-+++ +++.|+...+|.+++.+
T Consensus 201 VLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355 458776665332 123589999999998664 55566999999999988 48999999999999765
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=77.91 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred eec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. ..--|+|++|+|||.+.. +..|.+||+||+.-+++ +++.|+...+|.+++.+
T Consensus 201 VLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355 458776665332 123589999999998664 55566999999999988 48999999999999765
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00016 Score=77.83 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred eec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. ..--|+|++|+|||.+.. +..|.+||.||+.-+++ +++.|+...+|.+++.+
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355 458766665332 123589999999998664 55566999999999988 48999999999999765
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00018 Score=77.70 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred eec--CCHHHHHHHHhh----cCCCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV----SGFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~----~g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. ..--|+|++|+|||.+.. +..|.+||+||+.-+++ +++.|+...+|.+++.+
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355 458776665332 123589999999998664 55566999999999988 48999999999999765
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00037 Score=72.08 Aligned_cols=94 Identities=14% Similarity=0.229 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcC--------CeEEEcC-ceEeecCC-CCCc--cceeecccCCCce-----eee--cCCHHHHHHHH
Q 043787 63 HKVVKLIRRYLEDVH--------GFVEIET-PVLSRSTP-EGAR--DYLVPSRVQPGTF-----YAL--PQSPQLFKQML 123 (452)
Q Consensus 63 s~i~~~iR~ff~~~~--------gF~EV~T-PiL~~~~~-eGa~--~~~v~~~~~~g~~-----~~L--~qSpQl~kq~L 123 (452)
+.+...||++|.. . ||.|+.+ |.+.+..- =.+- +--+|.|.....+ ..| ++||.+..-
T Consensus 51 ~~~~~~i~~~f~~-~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~-- 127 (415)
T 3cmq_A 51 WLIKERVKEHFYK-QYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDL-- 127 (415)
T ss_dssp HHHHHHHHHHHHH-HHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHH--
T ss_pred HHHHHHHHHHHHh-hhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHH--
Confidence 4455566666655 5 8999999 66664321 0110 1112333211222 235 356766553
Q ss_pred hhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeec
Q 043787 124 MVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELA 159 (452)
Q Consensus 124 m~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~ 159 (452)
|..+..|+|++|+|||.+..++.|.|+|.|+|--..
T Consensus 128 l~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~l 163 (415)
T 3cmq_A 128 LHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRL 163 (415)
T ss_dssp HHTTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEE
T ss_pred HHHCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEE
Confidence 456677999999999999999999999999996544
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=76.37 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=50.6
Q ss_pred eec--CCHHHHHHHHhh-c---CCCceEEEeeeeecCCC-CCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHHH
Q 043787 111 ALP--QSPQLFKQMLMV-S---GFDKYYQIARCFRDEDL-RADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~--qSpQl~kq~Lm~-~---g~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~i 177 (452)
.|+ .+|.+..++-.. . .--|+|++|+|||.+.. ++.|.+||+||+.-+++. ++.++...+|.+++.+
T Consensus 194 vLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 194 TLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp ECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred ccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 354 458777766322 1 23489999999998764 555669999999999884 8999999999988754
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0009 Score=70.99 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=50.6
Q ss_pred eecCC--HHHHHHHHhh--cC--CCceEEEeeeeecCCC-CCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHH
Q 043787 111 ALPQS--PQLFKQMLMV--SG--FDKYYQIARCFRDEDL-RADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 111 ~L~qS--pQl~kq~Lm~--~g--~~rvfqi~~~FR~E~~-~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i 177 (452)
.|++| |.+..++-.. .+ --|+|++|+|||.|.. +..|.+||+|++..+++ +++.+++..+|.++..+
T Consensus 182 vLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 182 TLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred ccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 47665 7766665322 12 2489999999998765 55566999999999998 48999999999888654
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0016 Score=71.56 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeec
Q 043787 56 NHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS 90 (452)
Q Consensus 56 ~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~ 90 (452)
-.-.+++..|.+.+|+.|....||.||.||+|++.
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 34578999999999999973269999999999874
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0045 Score=64.61 Aligned_cols=111 Identities=13% Similarity=-0.005 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCeEEEcCceEeecCCCCCccceeecccCCCceeeecC-CHHHHHHH----HhhcC---C
Q 043787 58 NILLRHKVVKLIRRYLED-VHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQ-SPQLFKQM----LMVSG---F 128 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~-~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~q-SpQl~kq~----Lm~~g---~ 128 (452)
=..+|+.|.+..|+-+.. +.++.||.||+...-...|--+.+ .+||.. +-|-+... +-... -
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~---------~~~LRPeTaqg~~~nfk~~~~s~r~~LP 173 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAF---------RGGLRENLLHGALEHYVNCLDLVNKRLP 173 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCC---------TTB-CSCSHHHHHHHTTTTTGGGTTBSS
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhh---------cceECCCCChhHHHHHhhhhhhccccCC
Confidence 367889999855555543 245888999994432222222211 145643 33333322 11111 2
Q ss_pred CceEEEeeeeecCC--CCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDED--LRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 129 ~rvfqi~~~FR~E~--~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
-|+.|||+|||+|. +.+ -|-.||||.|++ .|++.++..+..+.++..+.
T Consensus 174 ~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~~~~~~~ 228 (459)
T 3ikl_A 174 YGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV-WFTPPRTSNQWLDFWLRHRL 228 (459)
T ss_dssp EEEEEEEEEECCC----------CCCCEEEEEEEE-EEECGGGHHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccccccCCCCcccccceeeeeEE-EEeChhHHHHHHHHHHHHHH
Confidence 37999999999995 233 356799999998 57788887777777766553
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0085 Score=62.54 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHH-H-hhcCCeEEEcCceEeecCC-CC--C-c----cceeec----c-----------cCCCceeee
Q 043787 58 NILLRHKVVKLIRRY-L-EDVHGFVEIETPVLSRSTP-EG--A-R----DYLVPS----R-----------VQPGTFYAL 112 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~f-f-~~~~gF~EV~TPiL~~~~~-eG--a-~----~~~v~~----~-----------~~~g~~~~L 112 (452)
=.+++..|.+.+++- + .. .|+.||.||+|.+..- ++ . + +.+... . ...+..+||
T Consensus 61 G~~l~~~i~~~~~~~~~~~~-~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~L 139 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFR-EQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKL 139 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-TTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEE
T ss_pred HHHHHHHHHHHHHHHHhhhc-CCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceee
Confidence 368889999988877 4 35 9999999999987651 11 1 1 111000 0 000223567
Q ss_pred c--CCHHH---HHHHHhhcC---CCceEEEeeeee---cCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 113 P--QSPQL---FKQMLMVSG---FDKYYQIARCFR---DEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 113 ~--qSpQl---~kq~Lm~~g---~~rvfqi~~~FR---~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
. ++|.. |+..+-... --+++|||+||| ||-+.. -|--||||.|++ .|++.++..+..+.++....
T Consensus 140 RPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~-~F~~pe~~~e~~~~~~~~~~ 218 (454)
T 1g5h_A 140 RATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLV-WFTPTRTSSQWLDFWLRHRL 218 (454)
T ss_dssp CSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEE-EEECHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheE-EEeCHhhHHHHHHHHHHHHH
Confidence 5 33322 233322222 258999999999 696432 355799999998 47888888877777766544
Q ss_pred H
Q 043787 179 L 179 (452)
Q Consensus 179 ~ 179 (452)
.
T Consensus 219 ~ 219 (454)
T 1g5h_A 219 L 219 (454)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.034 Score=61.89 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcCceEeecCCCC-----Cc-cceeecccCCCceeeecCC--HHHHHHHHhh--cC--CC
Q 043787 62 RHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEG-----AR-DYLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG--FD 129 (452)
Q Consensus 62 Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eG-----a~-~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g--~~ 129 (452)
..++.+.+|+.|.. .||.|+.|..+++..--. .. .+.+.... ....-.|++| |.+..-+.-. .+ --
T Consensus 495 ~~~~~~~ir~~L~~-~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPi-s~e~svLRtsLlpgLL~~l~~N~~r~~~~v 572 (795)
T 2rhq_B 495 RQHKTRTLKETLEG-AGLNQAITYSLVSKDHAKDFALQERPTISLLMPM-SEAHATLRQSLLPHLIEATAYNVARKNKDV 572 (795)
T ss_dssp HHHHHHHHHHHHHH-TTCEECCCCSEECTTTTTTTCSSCCCCEECSSCS-CTTSSEECSCSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHH-CCCEEEecCCccCHHHHHhhCCCCCceEEEcCCC-chhhhhhhhccHHHHHHHHHHHhcCCCCCe
Confidence 45677889999998 999999999998764211 11 11111111 1122247666 7766544321 22 34
Q ss_pred ceEEEeeeeecCCCCCCCCcceeeeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRADRQPEFTQLDMELAF-------------TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f-------------~~~~dlm~~~E~li~~i 177 (452)
|+|++|+|||.+.....+ +|++||..-+++ +|+.++...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 899999999964432233 899999987766 68999999999998765
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.028 Score=60.49 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC--------CCCCc-cceeecccCCCceeeecCC--HHHHHHHHhh--cC-C
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST--------PEGAR-DYLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG-F 128 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~--------~eGa~-~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g-~ 128 (452)
+++.+.+|+.|.. .||.||.|+.+++.. +.+.. .+.+.... ....-.|++| |.|-.-+.-. .+ -
T Consensus 394 ~~~~~~ir~~l~~-~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPi-s~e~svmRtsLlpgLL~~l~~N~~~~~~ 471 (589)
T 3l4g_B 394 NKLTELLRHDMAA-AGFTEALTFALCSQEDIADKLGVDISATKAVHISNPK-TAEFQVARTTLLPGLLKTIAANRKMPLP 471 (589)
T ss_dssp HHHHHHHHHHHHH-TTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCS-SGGGSEECSCSHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHH-CCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCC-chhHhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4567889999998 999999999998753 11111 11111110 1122247776 6665543211 11 2
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecCC--CHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLDDMLRLNEDLIRK 176 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~--~~~dlm~~~E~li~~ 176 (452)
-|+|++|+|||.+.....+.+|+.||..-+++. ++.++...+|.++..
T Consensus 472 vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 472 LKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 489999999998765444447999999877763 688888888876653
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.15 Score=47.52 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC------ccce-eecccCCCceeeecCC--HHHHHHHHh--hcCCC--
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA------RDYL-VPSRVQPGTFYALPQS--PQLFKQMLM--VSGFD-- 129 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa------~~~~-v~~~~~~g~~~~L~qS--pQl~kq~Lm--~~g~~-- 129 (452)
.++.+.+|+.|.. .||.||-|-.+++...-.. .+.. +.... ....-.|++| |.+-.-+-- ..+..
T Consensus 7 ~~~~~~ir~~L~~-~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 7 YKWQTVVSEQLVG-AGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPL-SQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHH-TTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBS-CSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHH-CCCceeeeccCCCHHHHhhhcccCcCCeEEecCCc-cHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 4677889999998 9999999999987542111 1111 11111 1233358887 666554321 23443
Q ss_pred ceEEEeeeeecCCCCC-----CCC-cceeeeeeeecC-------------CCHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRA-----DRQ-PEFTQLDMELAF-------------TPLDDMLRLNEDLIRK 176 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~-----~r~-~EFtqLe~e~~f-------------~~~~dlm~~~E~li~~ 176 (452)
|+|+||+||+.++... ..+ .|..+|-.-+++ +|+.++...+|.++..
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~ 150 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCR 150 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHH
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHH
Confidence 8999999999765321 122 477888776655 4788999888888754
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.1 Score=48.68 Aligned_cols=112 Identities=14% Similarity=0.227 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC------ccce-eecccCCCceeeecCC--HHHHHHHHh--hcCC--C
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA------RDYL-VPSRVQPGTFYALPQS--PQLFKQMLM--VSGF--D 129 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa------~~~~-v~~~~~~g~~~~L~qS--pQl~kq~Lm--~~g~--~ 129 (452)
.++.+.+|+.|.. .||.||-|-.+++...-.. .+.. +.... ....-.|++| |.+-.-+.- ..+. -
T Consensus 7 ~~~~~~ir~~l~~-~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 7 NKLQNLVAEQLVG-CGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPL-SADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHH-TTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGG-GCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHH-CCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCc-chhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 4677889999998 9999999999987542111 1111 11111 1122257777 666554321 1233 3
Q ss_pred ceEEEeeeeecCCCCC-----CCC-cceeeeeeeecC-------------CCHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRA-----DRQ-PEFTQLDMELAF-------------TPLDDMLRLNEDLIRK 176 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~-----~r~-~EFtqLe~e~~f-------------~~~~dlm~~~E~li~~ 176 (452)
|+|+||+||+.+.... ..+ .|..+|-.-+++ +|+.++...+|.++..
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~ 150 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKR 150 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHH
Confidence 8999999999865331 112 477888876666 3677888888777753
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.26 Score=54.77 Aligned_cols=107 Identities=20% Similarity=0.147 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEcCceEeecC-----CCCCccceeecccCCCceeeecCC--HHHHHHHHhh--cC---C
Q 043787 61 LRHKVVKLIRRYLEDVHGFVEIETPVLSRST-----PEGARDYLVPSRVQPGTFYALPQS--PQLFKQMLMV--SG---F 128 (452)
Q Consensus 61 ~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-----~eGa~~~~v~~~~~~g~~~~L~qS--pQl~kq~Lm~--~g---~ 128 (452)
-..++.+.+|+.|.. .||.|+-|-.+++.. +.+...+.+.... ....-.|++| |.+-.-+.-. .+ -
T Consensus 490 ~~~~~~~~ir~~L~~-~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPi-s~d~svLRtsLlpgLL~~l~~N~~r~~~~~ 567 (785)
T 1b7y_B 490 APYRKEQRLREVLSG-LGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPL-APEKAALRTHLFPGLVRVLKENLDLDRPER 567 (785)
T ss_dssp HHHHHHHHHHHHHHH-HTCEECCCCSEECTTHHHHTTCCCCSCEESSCS-STTSSEECSCSHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHH-CCCEEEecCcccCHHHHHhcCCCCCeEEEcCCC-chhhhhhhhhhHHHHHHHHHHHhhcCCCCC
Confidence 356678889999998 999999998888653 1111122221111 1122247666 7666544321 13 3
Q ss_pred CceEEEeeeeecCCCCCCCCcceeeeeeeecC------------CCHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLRADRQPEFTQLDMELAF------------TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f------------~~~~dlm~~~E~li~~i 177 (452)
-|+|++|+||| + +|++||..-+++ +|+.++...+|.++..+
T Consensus 568 vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 568 ALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 58999999999 2 899999987776 57999999999998765
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=83.04 E-value=0.45 Score=46.43 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=26.0
Q ss_pred hhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHH
Q 043787 390 RALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPE 428 (452)
Q Consensus 390 ~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~ 428 (452)
.+.++|+++||.|||||++|.|..+ +..|+++.
T Consensus 217 ~~~~~~l~~~~~eig~~Gv~p~vl~------~~~gi~~~ 249 (288)
T 3dsq_A 217 YGDTVDVMKGDLELASGAMGPHFLD------EKWEIFDP 249 (288)
T ss_dssp SCCCEEEEETTEEEEEEEEESCTTT------TTTTCCSC
T ss_pred EEEEEEEEeCCEEEEEEEecHHHHH------HhcCCCCC
Confidence 3678999999999999998888763 25676654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 452 | ||||
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 3e-54 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 7e-10 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 1e-47 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 2e-15 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 3e-35 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 5e-34 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 2e-04 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 1e-31 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 3e-07 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 2e-30 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 4e-29 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 2e-04 | |
| d1c0aa2 | 133 | d.74.4.1 (A:288-420) Prokaryotic AspRS, insert dom | 7e-22 | |
| d1l0wa2 | 120 | d.74.4.1 (A:295-414) Prokaryotic AspRS, insert dom | 6e-19 | |
| d1zq1c2 | 131 | d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotrans | 7e-18 | |
| d2d6fc2 | 125 | d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotrans | 4e-13 |
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 182 bits (463), Expect = 3e-54
Identities = 107/180 (59%), Positives = 138/180 (76%), Gaps = 2/180 (1%)
Query: 31 DDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRS 90
D+ EE RL+YR LDLRR +M + R K+ L+RR+++D HGF++IETP+L+++
Sbjct: 4 LDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDD-HGFLDIETPMLTKA 62
Query: 91 TPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPE 150
TPEGARDYLVPSRV G FYALPQSPQLFKQ+LM+SGFD+YYQI +CFRDEDLRADRQPE
Sbjct: 63 TPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPE 122
Query: 151 FTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRYGSDRPDTR 210
FTQ+D+E +F + + E L+R ++LE+K V L FP +T+AEA RYGSD+PD R
Sbjct: 123 FTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDL-GDFPVMTFAEAERRYGSDKPDLR 181
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 58.2 bits (140), Expect = 7e-10
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 330 DRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS- 388
+ R + + + L D SK + LW+ DFPMFE D E L A+HHPFT+P +L +
Sbjct: 168 EAERRYGSDKPDLRDESKWAPLWVIDFPMFED-DGEGGLTAMHHPFTSPKDMTAAELKAA 226
Query: 389 ---ARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSG 444
A A AYDMV NG E+GGGS+RI+ ++QQ V I+GI+ E+ + AL G
Sbjct: 227 PENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYG 285
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 165 bits (418), Expect = 1e-47
Identities = 116/189 (61%), Positives = 149/189 (78%), Gaps = 3/189 (1%)
Query: 24 PFLVTTADDAKDFVK--EEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVE 81
PF V ++ + EE+RL+YR LDLRR++M N+ LRH+V+K I +L+ GFV+
Sbjct: 3 PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDR-EGFVQ 61
Query: 82 IETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDE 141
+ETP L++STPEGARD+LVP R +PG FYALPQSPQLFKQMLMV+G D+Y+QIARCFRDE
Sbjct: 62 VETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDE 121
Query: 142 DLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSR 201
DLRADRQP+FTQLD+E++F ++D+L LNE L+ +F E V+LP PFPRL+Y EAM R
Sbjct: 122 DLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMER 181
Query: 202 YGSDRPDTR 210
YGSD+PD R
Sbjct: 182 YGSDKPDLR 190
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 74.8 bits (183), Expect = 2e-15
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Query: 343 IDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSS----ARALAYDMVY 398
+ LW+ DFP+ EW++ E+ +HHPFT+P+PED+ L RALAYD+V
Sbjct: 189 LRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVL 248
Query: 399 NGVEIGGGSLRIYKREVQQKVLEIVGISPEQ 429
NGVE+GGGS+RI+ +Q +V ++GI E+
Sbjct: 249 NGVEVGGGSIRIHDPRLQARVFRLLGIGEEE 279
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 130 bits (328), Expect = 3e-35
Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 14/194 (7%)
Query: 48 LDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLS----RSTPEGARDYLVPSR 103
+++ ++++ + ++ K+++ + + GF + ++S P+ A + + P+
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVK-EGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 104 VQP-GTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRAD---RQPEFTQLDMELA 159
V+ G L S L KQ+ + G K + ++ R E + D EFTQLD E+
Sbjct: 62 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 121
Query: 160 FTPLDDMLRLNEDLIRKIFLEIKDVQ-----LPNPFPRLTYAEAMSRYGSDRPDTRFSLQ 214
++D++RL E L+ +F + ++ F Y+E + +GSD ++ +
Sbjct: 122 RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEE 181
Query: 215 LNDVSDIFLESPFR 228
+ +I E R
Sbjct: 182 PFWIINIPREFYDR 195
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 128 bits (322), Expect = 5e-34
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 39 EEIRLRYRCLDLRRQQMNHNIL-LRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA-- 95
+E+R R R LDL + +R K++ IR+++ GF+E+ETP++ P GA
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFMEVETPMMQ-VIPGGASA 59
Query: 96 RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLD 155
R ++ Y L +P+L+ + L+V GF++ ++I R FR+E + PEFT ++
Sbjct: 60 RPFITHHNALDLDMY-LRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMME 118
Query: 156 MELAFTPLDDMLRLNEDLIRKIFLEIKDVQ----------LPNPFPRLTYAEAMSRYGSD 205
+ +A+ D++ L E L R + E+ PF +LT EA+ +Y +
Sbjct: 119 LYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE 178
Query: 206 RPDTRFS 212
Sbjct: 179 TDMADLD 185
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 315 ILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHP 374
+ ++G + L R+ T + E+ + +IT++P P
Sbjct: 193 LAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQP--TFITEYPAE------------VSP 238
Query: 375 FTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQ 429
N + + ++ G EIG G + E Q + + +
Sbjct: 239 LARRNDVNPEI-----TDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAA 288
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 121 bits (303), Expect = 1e-31
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 45 YRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRV 104
YR + LR ++ + ++ +V+ RRYL+ F EI TP + R+ EG
Sbjct: 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDR-QDFTEIFTPKVVRAGAEGGSGLFGVDYF 59
Query: 105 QPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAF-TP 162
L QSPQ + +MV F++ Y++A +R E+ R E+ LD+E+ F
Sbjct: 60 --EKRAYLAQSPQ-LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD 116
Query: 163 LDDMLRLNEDLIRKIF 178
+D++RL E L+ ++
Sbjct: 117 EEDLMRLEEALLAEML 132
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 49.4 bits (117), Expect = 3e-07
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 348 HSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGS 407
L++T +P PF ED ++D+++ G+EI G
Sbjct: 199 SDWLFVTRYPRS------------VRPFYTYPEEDG------TTRSFDLLFRGLEITSGG 240
Query: 408 LRIYKREVQQKVLEIVGISPEQF 430
RI++ E + L+ G+ PE F
Sbjct: 241 QRIHRYEELLESLKAKGMDPEAF 263
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 118 bits (297), Expect = 2e-30
Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 24 PFLVTTADDA--------KDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLED 75
P L+ A + V + RL YR +DLR ++ V +L R YL
Sbjct: 1 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 60
Query: 76 VHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIA 135
F E+ TP L + EG + + + L QSPQ KQ L+V+ F++ Y+I
Sbjct: 61 -KKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAY--LAQSPQFNKQQLIVADFERVYEIG 117
Query: 136 RCFRDEDLRADRQ-PEFTQLDMELAF-TPLDDMLRLNEDLIRKIF 178
FR E+ R EFT LDME+AF ++L +L IF
Sbjct: 118 PVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIF 162
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 114 bits (286), Expect = 4e-29
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 13/195 (6%)
Query: 23 LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEI 82
LP T A+ + RL R +DLRR ++ +R V K +R + + +GF+EI
Sbjct: 2 LPLDPTGKVKAE----LDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHE-NGFIEI 56
Query: 83 ETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDED 142
TP + + EG + + F +SPQL+K+++M SG D+ Y+IA FR E+
Sbjct: 57 HTPKIIATATEGGTELFPMKYFEEDAFL--AESPQLYKEIMMASGLDRVYEIAPIFRAEE 114
Query: 143 LRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDVQLPNPFPRLTYAEAMSRY 202
R ++D + L R + I V+ N + +
Sbjct: 115 HNTTRHLNEAWSIDS-EMAFIEDEEEVMSFLERLVAHAINYVREHNAKE-----LDILNF 168
Query: 203 GSDRPDTRFSLQLND 217
+ P F D
Sbjct: 169 ELEEPKLPFPRVSYD 183
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 41.0 bits (95), Expect = 2e-04
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 347 KHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDM--DDLSSARALAYDMVYNGVEIG 404
+ + L L+ + P + D A+D+ Y GVEI
Sbjct: 201 DIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEIS 260
Query: 405 GGSLRIYKREVQQKVLEIVGISPEQF 430
G R ++ ++ + ++ G++PE F
Sbjct: 261 SGGQREHRHDILVEQIKEKGLNPESF 286
|
| >d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Prokaryotic AspRS, insert domain species: Escherichia coli [TaxId: 562]
Score = 88.9 bits (220), Expect = 7e-22
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Query: 213 LQLNDVSDIFLESPFRVFSDSLK-SGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-G 270
++L DV+D+ F VF+ G + L VP GA + K+ D Y +K G
Sbjct: 3 MELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGA----SLTRKQIDEYGNFVKIYG 58
Query: 271 AKGLPFLKVLDAGGVEGIP--ALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKT 328
AKGL ++KV + + L E +L R +A D+I F + V
Sbjct: 59 AKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADA 118
Query: 329 LDRLRTFVAHELGL 342
+ LR V +LGL
Sbjct: 119 MGALRLKVGKDLGL 132
|
| >d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Prokaryotic AspRS, insert domain species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 80.4 bits (198), Expect = 6e-19
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 211 FSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS- 269
F L+L +V +F +S FRVF + +K L +P K+ E K
Sbjct: 1 FGLELKEVGPLFRQSGFRVFQE----AESVKALALPKALSR------KEVAELEEVAKRH 50
Query: 270 GAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTL 329
A+GL + +V + G G+ + +E LL A P D +LF G L
Sbjct: 51 KAQGLAWARVEEGGFSGGVAKFL----EPVREALLQATEARPGDTLLFVAGPRKVAATAL 106
Query: 330 DRLRTFVAHELGL 342
+R A LGL
Sbjct: 107 GAVRLRAADLLGL 119
|
| >d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Pyrococcus abyssi [TaxId: 29292]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain species: Pyrococcus abyssi [TaxId: 29292]
Score = 77.3 bits (190), Expect = 7e-18
Identities = 12/123 (9%), Positives = 35/123 (28%), Gaps = 9/123 (7%)
Query: 212 SLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS-G 270
+ DV+DIF + ++ + +K GG + + +P ++
Sbjct: 7 KEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRGLIG----REIQPGRRLGTEFA 62
Query: 271 AKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLD 330
+ ++ + + +++ R + D + L
Sbjct: 63 DRAKKYVPGIF----HIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALR 118
Query: 331 RLR 333
+
Sbjct: 119 EVI 121
|
| >d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 63.9 bits (155), Expect = 4e-13
Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 210 RFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTAL---KKGDIYNEA 266
++ DVS++F ++ R+ S + + + + G +
Sbjct: 2 VVEDKIFDVSEVFADTESRII----SSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADY 57
Query: 267 IKS-GAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASV 325
K G G+ L A G + L A D ++ +
Sbjct: 58 AKKRGVSGIFHTDELPAYG----------ITEEEVRGLRDAVGASQGDAVVMVAHERVTA 107
Query: 326 NKTLDRLR 333
L +
Sbjct: 108 ENALREVI 115
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1l0wa2 | 120 | Prokaryotic AspRS, insert domain {Thermus thermoph | 99.86 | |
| d1c0aa2 | 133 | Prokaryotic AspRS, insert domain {Escherichia coli | 99.85 | |
| d1zq1c2 | 131 | Glutamyl-tRNA(gln) amidotransferase subunit E, Gat | 99.68 | |
| d2d6fc2 | 125 | Glutamyl-tRNA(gln) amidotransferase subunit E, Gat | 99.63 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 98.63 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 98.47 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.37 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 98.15 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 97.96 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.95 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.93 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.86 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 97.84 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 97.82 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 97.61 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.24 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 97.11 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 96.95 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 93.49 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 92.32 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 87.32 |
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=1.2e-61 Score=492.70 Aligned_cols=292 Identities=54% Similarity=0.975 Sum_probs=256.6
Q ss_pred CCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceee
Q 043787 22 KLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVP 101 (452)
Q Consensus 22 ~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~ 101 (452)
++|+..+.......++++++|+++||||||++.++++||+||++++++|+||.+ +||+||+||+|++++++|+.+++++
T Consensus 3 ~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~-~gfiEV~TP~L~~~~~eg~~~~~~~ 81 (356)
T d1l0wa3 3 PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDR-EGFVQVETPFLTKSTPEGARDFLVP 81 (356)
T ss_dssp SSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSSBCCCSSSSCCCEEE
T ss_pred CcccCcccccccccccCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCccccCCCcccccchhh
Confidence 566654322222246789999999999999999999999999999999999998 9999999999999999999988877
Q ss_pred cccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHh
Q 043787 102 SRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEI 181 (452)
Q Consensus 102 ~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~ 181 (452)
+....+..+||+||||+|||+|+++|++||||||||||||+++++|||||||||||++|++++++|+++|+|++++++.+
T Consensus 82 ~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~~ 161 (356)
T d1l0wa3 82 YRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREA 161 (356)
T ss_dssp CTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccCCCcChhHHHHHhhhcccCcEEEEeccccccccCCcchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCc
Q 043787 182 KDVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGD 261 (452)
Q Consensus 182 ~~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~ 261 (452)
++...+.||+|++|.+|+.+|+.+.|+++
T Consensus 162 ~~~~~~~~f~r~~~~~a~~~~~~~~~~l~--------------------------------------------------- 190 (356)
T d1l0wa3 162 LGVELPLPFPRLSYEEAMERYGSDKPDLR--------------------------------------------------- 190 (356)
T ss_dssp TCCCCCSSCCEEEHHHHHHHHSSSSCCCS---------------------------------------------------
T ss_pred hCCCCCCCCCcchHHhhHHHHhcCcHhHH---------------------------------------------------
Confidence 99999999999999999999876654421
Q ss_pred chHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcC
Q 043787 262 IYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELG 341 (452)
Q Consensus 262 ~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~ 341 (452)
T Consensus 191 -------------------------------------------------------------------------------- 190 (356)
T d1l0wa3 191 -------------------------------------------------------------------------------- 190 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----ChhhhhhceeeeeecCeEeeccccccccHHHHH
Q 043787 342 LIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSARALAYDMVYNGVEIGGGSLRIYKREVQQ 417 (452)
Q Consensus 342 l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~ 417 (452)
.+..+++|++|||+.+++++...|...++||+...+.+.. +.....+.+|||++||+||+|||+|+||++.|+
T Consensus 191 ---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~a~~FdL~~~G~ElanG~~r~~d~~~~~ 267 (356)
T d1l0wa3 191 ---REGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQA 267 (356)
T ss_dssp ---CCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHH
T ss_pred ---HHhhhhhhccccccccccchhcceeeeeCCcccCChhhhchhhcCCCcceeeeeecccCCEEeeccEEEeCcHHHHH
Confidence 0013578999999999888888888889999887776655 344556889999999999999999999999999
Q ss_pred HHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 418 KVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 418 ~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
+.|+..|++++.....+.+||+|++|| +|||
T Consensus 268 ~r~~~~~~~~~~~~~~~~~yl~a~~~G---~PP~ 298 (356)
T d1l0wa3 268 RVFRLLGIGEEEQREKFGFFLEALEYG---APPH 298 (356)
T ss_dssp HHHHHHTCCTTTHHHHTHHHHHHTTBT---CCCE
T ss_pred HHHHHHcCCchhhHHHHHHHHHHhhCC---CCCc
Confidence 999999999876655566699999999 9998
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-60 Score=479.04 Aligned_cols=284 Identities=54% Similarity=0.904 Sum_probs=243.3
Q ss_pred CCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeec
Q 043787 23 LPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPS 102 (452)
Q Consensus 23 ~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~ 102 (452)
+|++... ..++|+|++|||||||++.++++|++||++++++|+||.+ +||+||+||+|++++++|+.++++++
T Consensus 2 lP~~~~~------~~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~-~gFlEV~TPiL~~~~~~g~~~~~~~~ 74 (346)
T d1c0aa3 2 LPLDSNH------VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDD-HGFLDIETPMLTKATPEGARDYLVPS 74 (346)
T ss_dssp CSSCTTS------CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSSBCCCSSSSCCCEEEC
T ss_pred CCCCCCC------CCCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCccCCCCCcccccccccc
Confidence 5765432 4678999999999999999999999999999999999998 99999999999999999999888777
Q ss_pred ccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhc
Q 043787 103 RVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIK 182 (452)
Q Consensus 103 ~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~ 182 (452)
....++.+||+||||+|+|+|+++|++||||||||||+|+++++||||||||||||+|++++++|+++|+|+++++.++.
T Consensus 75 ~~~~~~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~ 154 (346)
T d1c0aa3 75 RVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVK 154 (346)
T ss_dssp SSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccccCCcCHHHHHHHHhhcCCCceEEEeeeccccccCchhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHh
Confidence 66678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcc
Q 043787 183 DVQLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDI 262 (452)
Q Consensus 183 ~~~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~ 262 (452)
++++ .+|++++|.||+.+|+++.++++...
T Consensus 155 ~~~~-~~~~~~~~~e~~~~~~~~~~~l~~~~------------------------------------------------- 184 (346)
T d1c0aa3 155 GVDL-GDFPVMTFAEAERRYGSDKPDLRDES------------------------------------------------- 184 (346)
T ss_dssp SCCC-CSCCEEEHHHHHHHHSCSSCCTTCSS-------------------------------------------------
T ss_pred CCcC-CccceeeHHHHHHHhcccccchhhHh-------------------------------------------------
Confidence 8877 57999999999999988776542110
Q ss_pred hHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCC
Q 043787 263 YNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGL 342 (452)
Q Consensus 263 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l 342 (452)
T Consensus 185 -------------------------------------------------------------------------------- 184 (346)
T d1c0aa3 185 -------------------------------------------------------------------------------- 184 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCcc----ChhhhhhceeeeeecCeEeeccccccccHHHHHH
Q 043787 343 IDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMD----DLSSARALAYDMVYNGVEIGGGSLRIYKREVQQK 418 (452)
Q Consensus 343 ~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~----~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~ 418 (452)
.+..+|+.|+|+++... ++.+...+|||..|.+.... ++....+.+|||++||+||+|||.|+||++.|++
T Consensus 185 ----~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~a~~fdl~~~G~El~nG~~rl~d~~~~~~ 259 (346)
T d1c0aa3 185 ----KWAPLWVIDFPMFEDDG-EGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQT 259 (346)
T ss_dssp ----CCCEEEEECCBSEEECS-SSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHH
T ss_pred ----hhhhhccccccccchhc-ccceeeeEeeccccchhhHHHhccCCccccccccccCcCCEEEechhhhhchHHHHHH
Confidence 12346666666665332 44566667777666542221 2334578999999999999999999999999999
Q ss_pred HHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 419 VLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 419 if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.|+..|++++.....+.+||+|++|| ||||
T Consensus 260 r~~~~~~~~~~~~e~~~~ylda~~~G---~PP~ 289 (346)
T d1c0aa3 260 VFGILGINEEEQREKFGFLLDALKYG---TPPH 289 (346)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTTT---CCCE
T ss_pred HHHHhCccccchHHHHHHHHHHHHCC---CCCc
Confidence 99999999976666667799999999 9998
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=8.1e-59 Score=468.96 Aligned_cols=295 Identities=25% Similarity=0.448 Sum_probs=222.4
Q ss_pred CHhhhhccceeee-cchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCC-ccceeecccCCCceeeecCC
Q 043787 38 KEEIRLRYRCLDL-RRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGA-RDYLVPSRVQPGTFYALPQS 115 (452)
Q Consensus 38 ~~~~rl~~r~Ldl-R~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa-~~~~v~~~~~~g~~~~L~qS 115 (452)
++|+|++|||||| |++.+++++++||++++++|+||.+ +||+||+||+|++++++|+ ..|.++++. .+..+||+||
T Consensus 1 d~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~-~gFiEV~TPil~~~~~~~~~~~f~~~~~~-~~~~~yL~~S 78 (342)
T d1e1oa2 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFMEVETPMMQVIPGGASARPFITHHNA-LDLDMYLRIA 78 (342)
T ss_dssp CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-TTCEECCCCSEESSCCSSCCCCCEEEETT-TTEEEEECSC
T ss_pred ChHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCccccCCCCCCcceeecccC-CCcccccchh
Confidence 4789999999999 7899999999999999999999998 9999999999998888875 567677653 4556779999
Q ss_pred HHHHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcCC----------C
Q 043787 116 PQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKDV----------Q 185 (452)
Q Consensus 116 pQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~~----------~ 185 (452)
||+|||++|++|++||||||||||+|+++++|+||||||||||+|++++|+|+++|+|+++++..+++. +
T Consensus 79 pql~~k~~l~~g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~~~~~~~~ 158 (342)
T d1e1oa2 79 PELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFD 158 (342)
T ss_dssp SHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEE
T ss_pred hHHHHHHHhhhcccceeeeccccccccccccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhhccchhcc
Confidence 999999999999999999999999999988777999999999999999999999999999999988652 4
Q ss_pred CCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHH
Q 043787 186 LPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNE 265 (452)
Q Consensus 186 l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~ 265 (452)
+..||++++|.+|++.+....+- .+... ... ....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------------------------------~~~-----~~~~ 193 (342)
T d1e1oa2 159 FGKPFEKLTMREAIKKYRPETDM-------ADLDN---------------------------------FDA-----AKAL 193 (342)
T ss_dssp TTSCCEEEEHHHHHHHHSTTCCG-------GGGGS---------------------------------HHH-----HHHH
T ss_pred cCCchhhhhHHHHHHHHhccccH-------hhhhh---------------------------------hHH-----HHHH
Confidence 56899999999999988432110 00000 000 0001
Q ss_pred HHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCC
Q 043787 266 AIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDN 345 (452)
Q Consensus 266 ~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~ 345 (452)
++..|.+ + +.. + .+|.+...+.+.+ +.+
T Consensus 194 ~~~~~~~------~-~~~-~------------------------------------------~~~~~~~~~~~~~--~~~ 221 (342)
T d1e1oa2 194 AESIGIT------V-EKS-W------------------------------------------GLGRIVTEIFDEV--AEA 221 (342)
T ss_dssp HHHTTCC------C-CTT-C------------------------------------------CHHHHHHHHHHHH--TGG
T ss_pred HHHcCCC------c-ccc-c------------------------------------------chhHHHHHHHHHh--hHh
Confidence 1111110 0 000 0 0122222222211 112
Q ss_pred CCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHH---
Q 043787 346 SKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEI--- 422 (452)
Q Consensus 346 ~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~--- 422 (452)
.-..|+||+|||.. +.||+++.++|.. .+.+|||++||.||+|||+|+||++.|.+.|+.
T Consensus 222 ~~~~p~fi~~~P~~------------~~~f~~~~~~~~~-----~~~~fdl~~~g~El~~G~~r~~d~~~~~~r~~~~~~ 284 (342)
T d1e1oa2 222 HLIQPTFITEYPAE------------VSPLARRNDVNPE-----ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVN 284 (342)
T ss_dssp GCCSCEEEECCBGG------------GCTTBCBCSSCTT-----BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHH
T ss_pred hccCCCcCCCCccc------------cChhhccccccch-----hhhhhhcccCCEeecCCccccCCHHHHHHHHHHHHH
Confidence 22479999999963 7899998766643 689999999999999999999999999999953
Q ss_pred -cCCCHHHHhhhhhhhhhhhhcCCCCCCCC
Q 043787 423 -VGISPEQFIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 423 -lg~~~~~~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+...++..+...+||+|++|| ||||
T Consensus 285 ~~~~~~~~~~~~d~~yl~a~~~G---~pPh 311 (342)
T d1e1oa2 285 AKAAGDDEAMFYDEDYVTALEYG---LPPT 311 (342)
T ss_dssp HHHTTCTTCCCCCHHHHHHHHHH---CCSE
T ss_pred HHhcCcchhhhhhHHHHHHhhCC---CCCc
Confidence 3344444433334599999999 9999
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-57 Score=461.71 Aligned_cols=273 Identities=31% Similarity=0.483 Sum_probs=218.7
Q ss_pred CCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCH
Q 043787 37 VKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSP 116 (452)
Q Consensus 37 ~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSp 116 (452)
+++|+|++|||||||++.++++||+||++++++|+||.+ +||+||+||+|++++|||+.+.++++.. +..+||+|||
T Consensus 22 ~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~-~gflEV~TPiL~~~~~eg~~~~f~~~~~--~~~~yL~~Sp 98 (353)
T d1eova2 22 VNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT-KKFTEVHTPKLLGAPSEGGSSVFEVTYF--KGKAYLAQSP 98 (353)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEESSCSSSSSCCCEEEET--TEEEEECSCT
T ss_pred CCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCccCCCCCcchhccccceee--CCcceeccch
Confidence 679999999999999999999999999999999999998 9999999999999999998887765552 4456799999
Q ss_pred HHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHhcCC----------
Q 043787 117 QLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTP-LDDMLRLNEDLIRKIFLEIKDV---------- 184 (452)
Q Consensus 117 Ql~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~~-~~dlm~~~E~li~~i~~~~~~~---------- 184 (452)
|+|+|+||++|++||||||||||||+++++|| |||||||||++|.+ ++++|+++|+|++++++.+.+.
T Consensus 99 el~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~ 178 (353)
T d1eova2 99 QFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRK 178 (353)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHHHHHhhhccccchhhhhhhhhhcc
Confidence 99999999999999999999999999999888 99999999999996 8999999999999998765320
Q ss_pred ---------CCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchh
Q 043787 185 ---------QLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNT 255 (452)
Q Consensus 185 ---------~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~ 255 (452)
....+|.|++|.||++.+...... +.
T Consensus 179 ~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~~~~------~~--------------------------------------- 213 (353)
T d1eova2 179 QYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKE------IG--------------------------------------- 213 (353)
T ss_dssp HSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCC------CC---------------------------------------
T ss_pred cCccceeeccCCCceeeeehHhhHHHHHHHhhh------cc---------------------------------------
Confidence 112467788888887765321100 00
Q ss_pred hhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHH
Q 043787 256 ALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTF 335 (452)
Q Consensus 256 ~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~ 335 (452)
+. ..++.+ ....++++
T Consensus 214 --------------------------~~---------~~~~~~--------------------------~~~~l~~~--- 229 (353)
T d1eova2 214 --------------------------DF---------EDLSTE--------------------------NEKFLGKL--- 229 (353)
T ss_dssp --------------------------TT---------CCCCHH--------------------------HHHHHHHH---
T ss_pred --------------------------cc---------cccchh--------------------------hHHHHHHH---
Confidence 00 000000 01112221
Q ss_pred HHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCc-CCCCCCCccChhhhhhceeeeeecCeEeeccccccccHH
Q 043787 336 VAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPF-TAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKRE 414 (452)
Q Consensus 336 l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPF-T~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~e 414 (452)
+.+.++ ..++||+|||.- .+|| +++++++.. .+.+|||++||.||+|||.|+||++
T Consensus 230 i~~~~~------~~~~~i~~~P~~------------~~p~~~~~~~~~~~-----~a~rfeL~~~G~El~nG~~e~~d~~ 286 (353)
T d1eova2 230 VRDKYD------TDFYILDKFPLE------------IRPFYTMPDPANPK-----YSNSYDFFMRGEEILSGAQRIHDHA 286 (353)
T ss_dssp HHHHSC------CSEEEEECCBGG------------GSCTTBCBCSSCTT-----BBSEEEEEETTEEEEEEEEBCCCHH
T ss_pred HHhhcc------CCcccccCCcHH------------HhhhhhCCChhhhh-----hhhceeeeeeceEEcceecccCCHH
Confidence 223333 468999999973 6788 566665543 6899999999999999999999999
Q ss_pred HHHHHHHHcCCCHHH--HhhhhhhhhhhhhcCCCCCCCC
Q 043787 415 VQQKVLEIVGISPEQ--FIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 415 lQ~~if~~lg~~~~~--~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.|++.|+..|+++++ .+| ||+||+|| +|||
T Consensus 287 ~~~~r~~~~~~~~~~~~~~~----yl~al~~G---~PP~ 318 (353)
T d1eova2 287 LLQERMKAHGLSPEDPGLKD----YCDGFSYG---CPPH 318 (353)
T ss_dssp HHHHHHHHTTCCTTSTTTHH----HHHHHTTC---CCCE
T ss_pred HHHHHHHHcCCChhhhHHHH----HHHHhHcC---CCCC
Confidence 999999999999875 445 99999999 9998
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=2.9e-52 Score=419.45 Aligned_cols=286 Identities=26% Similarity=0.475 Sum_probs=226.3
Q ss_pred CCCcccccccccCCCCCHhhhhccceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceee
Q 043787 22 KLPFLVTTADDAKDFVKEEIRLRYRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVP 101 (452)
Q Consensus 22 ~~P~~~~~~~~~~~~~~~~~rl~~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~ 101 (452)
++|+.+.+. ...++++|+++||||||++.++++|++||+++++||+||.+ +||+||+||+|++++++|+.+.+..
T Consensus 1 plp~~~~~~----~~~~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~-~gflEV~TPil~~~~~~~~~~~f~~ 75 (335)
T d1b8aa2 1 PLPLDPTGK----VKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHE-NGFIEIHTPKIIATATEGGTELFPM 75 (335)
T ss_dssp SCSSCTTSS----SCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEESCCCSSSSSCCEE
T ss_pred CCCCCcCCC----CCCCHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCccCccCCchhhhhccc
Confidence 477776543 36789999999999999999999999999999999999998 9999999999999999988776643
Q ss_pred cccCCCceeeecCCHHHHHHHHhhcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHH
Q 043787 102 SRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 102 ~~~~~g~~~~L~qSpQl~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~ 179 (452)
.. .++.+||+||||+|+|+||++|++||||||||||||++++.|| +||||+|+|+++. +++++|++++.++..+.+
T Consensus 76 ~~--~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~ 153 (335)
T d1b8aa2 76 KY--FEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAIN 153 (335)
T ss_dssp EE--TTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHH
T ss_pred cc--cccccccccChHHHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33 4677899999999999999999999999999999999999877 7999999999986 899999999999999887
Q ss_pred Hhc----------CC---CCCCCCceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEcc
Q 043787 180 EIK----------DV---QLPNPFPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVP 246 (452)
Q Consensus 180 ~~~----------~~---~l~~pf~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p 246 (452)
.+. +. ....||+|+||.||++.++....++..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~e~~~~l~~~~~~~~~~---------------------------------- 199 (335)
T d1b8aa2 154 YVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWG---------------------------------- 199 (335)
T ss_dssp HHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCCCCTT----------------------------------
T ss_pred HHhhcccchhhhhccccccCCCCcccccHHHHHHHHHhhccccCcc----------------------------------
Confidence 653 22 2246999999999998875332111000
Q ss_pred CCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHH
Q 043787 247 SGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVN 326 (452)
Q Consensus 247 ~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~ 326 (452)
..++.+. .
T Consensus 200 ----------------------------------------------~~~~~~~-~------------------------- 207 (335)
T d1b8aa2 200 ----------------------------------------------EDIDTEG-E------------------------- 207 (335)
T ss_dssp ----------------------------------------------SCCCHHH-H-------------------------
T ss_pred ----------------------------------------------ccccccc-c-------------------------
Confidence 0000000 0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccEEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeecc
Q 043787 327 KTLDRLRTFVAHELGLIDNSKHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGG 406 (452)
Q Consensus 327 ~~LG~lR~~l~~~l~l~~~~~~~flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGG 406 (452)
..+ ...+....+ ..++||+|||.- .-||.+...++. +. .+..|||++||+||+||
T Consensus 208 ~~~---~~~~~~~~~------~~~~fi~~~P~~------------~~pl~~~~~~~~--~~--~a~rfel~~~G~El~nG 262 (335)
T d1b8aa2 208 RLL---GKYMMENEN------APLYFLYQYPSE------------AKPFYIMKYDNK--PE--ICRAFDLEYRGVEISSG 262 (335)
T ss_dssp HHH---HHHHHHHHC------CSEEEEESCBGG------------GSCTTBCEETTE--EE--EESEEEEEETTEEEEEE
T ss_pred cce---eeeeecccc------cccceeecChHH------------hhhccccccCCC--cH--HHHhhccccCceeeecc
Confidence 000 111222222 357899999963 446765532221 11 57899999999999999
Q ss_pred ccccccHHHHHHHHHHcCCCHHHHhhhhhhhhhhhhcCCCCCCCCC
Q 043787 407 SLRIYKREVQQKVLEIVGISPEQFIFAEVVAIPALSSGDFNCQPQT 452 (452)
Q Consensus 407 SiRIh~~elQ~~if~~lg~~~~~~~~~f~~~l~a~~~G~~~~~p~~ 452 (452)
|+|+||++.|++.|+..|+++++++| ||+|++|| +|||.
T Consensus 263 ~~e~~~~~~~~~r~~~~~~~~e~~e~----yl~al~~G---~Pp~~ 301 (335)
T d1b8aa2 263 GQREHRHDILVEQIKEKGLNPESFEF----YLKAFRYG---MPPHG 301 (335)
T ss_dssp EEBCCCHHHHHHHHHHTTCCGGGGHH----HHHTTSBC---CCCEE
T ss_pred cchhcCHHHHHHHHHHcCCCHHHHHH----HHHHhhcC---CCCCc
Confidence 99999999999999999999999888 99999999 99983
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=3.7e-52 Score=413.58 Aligned_cols=262 Identities=30% Similarity=0.504 Sum_probs=173.0
Q ss_pred cceeeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeecCCHHHHHHHHh
Q 043787 45 YRCLDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLM 124 (452)
Q Consensus 45 ~r~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm 124 (452)
|||||||++.++++|++||+|++++|+||.+ +||+||+||+|++++|||+.+.+++... ++.+||+||||+|||+ |
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~-~gf~Ev~TP~l~~~~~e~~~~~f~~~~~--~~~~~L~~Spel~k~l-l 76 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDR-QDFTEIFTPKVVRAGAEGGSGLFGVDYF--EKRAYLAQSPQLYKQI-M 76 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEECCCC------------------------------CHHHHHH-H
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCccCCCCCCCCCceECCccc--ccchhccccHHHHHHH-h
Confidence 8999999999999999999999999999998 9999999999999999998887766543 5667899999999886 6
Q ss_pred hcCCCceEEEeeeeecCCCCCCCC-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHhcCC-------------CCCCC
Q 043787 125 VSGFDKYYQIARCFRDEDLRADRQ-PEFTQLDMELAFT-PLDDMLRLNEDLIRKIFLEIKDV-------------QLPNP 189 (452)
Q Consensus 125 ~~g~~rvfqi~~~FR~E~~~~~r~-~EFtqLe~e~~f~-~~~dlm~~~E~li~~i~~~~~~~-------------~l~~p 189 (452)
++|++||||||||||+|+++++|| +||||||||+++. +++++|+++|++++.++..+++. ..+.+
T Consensus 77 ~~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (304)
T d1n9wa2 77 VGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQD 156 (304)
T ss_dssp HHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCCSSS
T ss_pred hcccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceecccch
Confidence 889999999999999999988777 8999999999997 78899999999999998876431 12244
Q ss_pred CceeeHHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHc
Q 043787 190 FPRLTYAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKS 269 (452)
Q Consensus 190 f~rity~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~ 269 (452)
|++++|.||++.+....
T Consensus 157 ~~~~~~~e~~~~l~~~~--------------------------------------------------------------- 173 (304)
T d1n9wa2 157 IPRLTHAEAKRILKEEL--------------------------------------------------------------- 173 (304)
T ss_dssp CCEEEHHHHHHHHHHTS---------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHh---------------------------------------------------------------
Confidence 55555555554321100
Q ss_pred CCCCccEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCcc
Q 043787 270 GAKGLPFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHS 349 (452)
Q Consensus 270 ~~~gl~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~ 349 (452)
+ .+..+..+++.... |+ ..+...++ ..
T Consensus 174 ~------------------~~~~~~~~~~~~~~--------------------------l~---~~~~~~~~------~~ 200 (304)
T d1n9wa2 174 G------------------YPVGQDLSEEAERL--------------------------LG---EYAKERWG------SD 200 (304)
T ss_dssp C------------------CCCCSSCCHHHHHH--------------------------HH---HHHHHHTC------CS
T ss_pred C------------------CCcCCCccHHHHHH--------------------------HH---HHHHhhcC------Cc
Confidence 0 00001111111111 11 12223333 36
Q ss_pred EEEEeccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeeecCeEeeccccccccHHHHHHHHHHcCCCHHH
Q 043787 350 ILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQ 429 (452)
Q Consensus 350 flWV~dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVlNG~EiGGGSiRIh~~elQ~~if~~lg~~~~~ 429 (452)
++||+|||.. ++||.+...+|. .+++|||++||+||+|||+|+||++.|++.|+..|++++.
T Consensus 201 ~~fi~~~P~~------------~~p~~~~~~~~~------~a~rfel~~~G~El~nG~~e~~d~~~l~~r~~~~~~~~e~ 262 (304)
T d1n9wa2 201 WLFVTRYPRS------------VRPFYTYPEEDG------TTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEA 262 (304)
T ss_dssp EEEEECCBGG------------GSCTTBCBCTTS------BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGG
T ss_pred eEEEeCChhh------------hCchhhcccccc------eeehhccccCcEEEeccccccCCHHHHHHHHHHcCCCHHH
Confidence 8999999963 789977654442 4789999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhcCCCCCCCC
Q 043787 430 FIFAEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 430 ~~~~f~~~l~a~~~G~~~~~p~ 451 (452)
.+| ||+|+++| +|||
T Consensus 263 ~~~----yl~al~~G---~PP~ 277 (304)
T d1n9wa2 263 FHG----YLEVFKYG---MPPH 277 (304)
T ss_dssp GHH----HHGGGGBC---CCSE
T ss_pred HHH----HHHHHhcC---CCCC
Confidence 888 99999999 9998
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.4e-49 Score=393.49 Aligned_cols=240 Identities=23% Similarity=0.417 Sum_probs=195.7
Q ss_pred eeecchHHHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC----CCCCccceeeccc-CCCceeeecCCHHHHHHH
Q 043787 48 LDLRRQQMNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST----PEGARDYLVPSRV-QPGTFYALPQSPQLFKQM 122 (452)
Q Consensus 48 LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~----~eGa~~~~v~~~~-~~g~~~~L~qSpQl~kq~ 122 (452)
||||++.++++|++||++++++|+||.+ +||+||+||+|++.+ ++++.+...+... ..|+.+||+||||+|||+
T Consensus 3 l~l~~~~~~~il~~Rs~i~~~iR~ff~~-~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~yL~~SPel~lk~ 81 (293)
T d1nnha_ 3 VEIISREISPTLDIQTKILEYMTDFFVK-EGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQL 81 (293)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHHHHH-TTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEcCCcccccCCCCCCccccCccccccccCCCceeecccChhhhHHH
Confidence 7899999999999999999999999998 999999999998754 3444444333221 137788999999999999
Q ss_pred HhhcCCCceEEEeeeeecCCCC--CCCC-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHhcC---CC--CCCCCceee
Q 043787 123 LMVSGFDKYYQIARCFRDEDLR--ADRQ-PEFTQLDMELAFTPLDDMLRLNEDLIRKIFLEIKD---VQ--LPNPFPRLT 194 (452)
Q Consensus 123 Lm~~g~~rvfqi~~~FR~E~~~--~~r~-~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~~~~---~~--l~~pf~rit 194 (452)
||++|++||||||||||||+++ +.|| |||||||||++|.+++|+|+++|+|++++++.+.+ .+ ...+|+|++
T Consensus 82 lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (293)
T d1nnha_ 82 AIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFE 161 (293)
T ss_dssp HHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCEEEE
T ss_pred HHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcccccc
Confidence 9999999999999999999654 4466 99999999999999999999999999999987642 33 347899999
Q ss_pred HHHHHHHhCCCCCCCcccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCc
Q 043787 195 YAEAMSRYGSDRPDTRFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGL 274 (452)
Q Consensus 195 y~eA~~~~g~dkpd~r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl 274 (452)
|.||++.+|.|+.
T Consensus 162 ~~eal~~~g~d~~------------------------------------------------------------------- 174 (293)
T d1nnha_ 162 YSEVLEEFGSDEK------------------------------------------------------------------- 174 (293)
T ss_dssp HHHHHHHTSSHHH-------------------------------------------------------------------
T ss_pred HHhhhcccCcccc-------------------------------------------------------------------
Confidence 9999988764210
Q ss_pred cEEEEecCCCccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCCCCCCccEEEEe
Q 043787 275 PFLKVLDAGGVEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLIDNSKHSILWIT 354 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~~~~~~~flWV~ 354 (452)
..+.+ ..++|++
T Consensus 175 -------------------------------------------------------------~~~~~-------~~p~~~~ 186 (293)
T d1nnha_ 175 -------------------------------------------------------------ASQEM-------EEPFWII 186 (293)
T ss_dssp -------------------------------------------------------------HHHHC-------SSCEEEE
T ss_pred -------------------------------------------------------------ccccc-------ccceecc
Confidence 00001 1478999
Q ss_pred ccCCCccCcccccccccccCcCCCCCCCccChhhhhhceeeeee--cCeEeeccccccccHHHHHHHHHHcCCCHHHHhh
Q 043787 355 DFPMFEWNDSEQRLEALHHPFTAPNPEDMDDLSSARALAYDMVY--NGVEIGGGSLRIYKREVQQKVLEIVGISPEQFIF 432 (452)
Q Consensus 355 dFPlfe~~e~~~r~~a~HHPFT~P~~ed~~~~~~v~a~~YDLVl--NG~EiGGGSiRIh~~elQ~~if~~lg~~~~~~~~ 432 (452)
|||.. |++...++. ..++|+++ +|.||++|+.|+||++.|++.|+..|++++.++|
T Consensus 187 ~~p~~---------------f~~~~~~~~-------~~~~~~~l~~~g~Elang~~el~d~~~~~~r~~~~gl~~e~~~~ 244 (293)
T d1nnha_ 187 NIPRE---------------FYDREVDGF-------WRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRP 244 (293)
T ss_dssp CCCCC---------------TTBCEETTE-------ECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH
T ss_pred ccchh---------------hcccccccc-------cccceeEecccCcccccccccccCHHHHHHHHHHcCCCHHHHHH
Confidence 99952 554433332 34556555 9999999999999999999999999999999998
Q ss_pred hhhhhhhhhhcCCCCCCCC
Q 043787 433 AEVVAIPALSSGDFNCQPQ 451 (452)
Q Consensus 433 ~f~~~l~a~~~G~~~~~p~ 451 (452)
||+|++|| .||||
T Consensus 245 ----yl~a~~~G--~mPP~ 257 (293)
T d1nnha_ 245 ----YLEIAKAG--KLKPS 257 (293)
T ss_dssp ----HHHHHHTT--CCCCE
T ss_pred ----HHHHHHhC--CCCCC
Confidence 99999999 88998
|
| >d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Prokaryotic AspRS, insert domain species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.86 E-value=5e-22 Score=170.50 Aligned_cols=120 Identities=32% Similarity=0.506 Sum_probs=107.1
Q ss_pred ccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCcccccc
Q 043787 211 FSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIPA 290 (452)
Q Consensus 211 ~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 290 (452)
|+|++.|+++++.+++|++|.+ ++.|+++++|+. +||++++. +.++|+++|++||+|+++. ++.+ .||
T Consensus 1 Fglei~Dvt~~f~~s~f~vF~~----~~~Vk~i~vp~~---~sRk~~d~--l~~~ak~~gakGL~~ik~~-~~~~--~gp 68 (120)
T d1l0wa2 1 FGLELKEVGPLFRQSGFRVFQE----AESVKALALPKA---LSRKEVAE--LEEVAKRHKAQGLAWARVE-EGGF--SGG 68 (120)
T ss_dssp SCCCCEECGGGGSSSCCTHHHH----SSEEEEEEESSC---CCHHHHHH--HHHHHHHTSCSCCEEEEEE-TTEE--EST
T ss_pred CCceeeeHHHHhcCCCCeEeec----CCeEEEEEcCCc---cCHHHHHH--HHHHHHHhhhhhhheeEee-ccch--hhH
Confidence 6899999999999999999964 578999999974 89999863 6788999999999999995 4434 689
Q ss_pred ccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCC
Q 043787 291 LVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLI 343 (452)
Q Consensus 291 ~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~ 343 (452)
++|+|++ +.++|.+++++++||+|||+||++..++++||+||+++|+++||+
T Consensus 69 i~Kfl~~-~~~~l~~~~~~~~GD~i~f~ag~~~~~~~~LG~lR~~la~~l~Lr 120 (120)
T d1l0wa2 69 VAKFLEP-VREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLK 120 (120)
T ss_dssp THHHHGG-GHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhHH-HHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999964 578899999999999999999999999999999999999999974
|
| >d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Prokaryotic AspRS, insert domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=3.5e-22 Score=174.55 Aligned_cols=129 Identities=28% Similarity=0.413 Sum_probs=115.8
Q ss_pred cccccccccccccCcccccccccc-CCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCC--cccc
Q 043787 212 SLQLNDVSDIFLESPFRVFSDSLK-SGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGG--VEGI 288 (452)
Q Consensus 212 ~~~~~~~~~~~~~~~f~~~~~~i~-~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~--~~~~ 288 (452)
+|++.|++++|.+++|.+|.+.+. +++.|+++++|..+ .+||++++. +.++++++|++||+|+++.+++. ..+.
T Consensus 2 pmei~Dvt~if~~s~f~vF~~~~~~~gg~Vk~i~vp~~~-~~srk~id~--l~~~ak~~ga~GL~~~k~~~~~~~~~~~~ 78 (133)
T d1c0aa2 2 PMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGA-SLTRKQIDE--YGNFVKIYGAKGLAYIKVNERAKGLEGIN 78 (133)
T ss_dssp CCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGG-GCCHHHHHH--HHHHHHHTTCSCCCEEEESCGGGGGGGEE
T ss_pred CEEEEEHHHHhCCCCchhhhHhHhCCCCEEEEEEccCCc-cccHHHHHH--HHHHHHHhCCCcceEEEEecCCccccccc
Confidence 688999999999999999998764 57899999999975 499999964 56789999999999999987752 1236
Q ss_pred ccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHcCCC
Q 043787 289 PALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHELGLI 343 (452)
Q Consensus 289 ~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~l~l~ 343 (452)
||+.|+|++++..+|.+.+++++||+|||+||+...++++||+||++||++++|.
T Consensus 79 gpi~Kfl~~e~~~~l~~~~~~~~GD~iff~ag~~~~v~~~LG~lR~~la~~l~Lt 133 (133)
T d1c0aa2 79 SPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLT 133 (133)
T ss_dssp CTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHhhCCHHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999999999999999999999973
|
| >d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.68 E-value=4.9e-18 Score=147.54 Aligned_cols=123 Identities=10% Similarity=0.131 Sum_probs=105.5
Q ss_pred cccccccccccccccCccccccccccCCCeEEEEEccCCCcccchhhhccCcchHHHHHcCCCCccEEEEecCCCccccc
Q 043787 210 RFSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTYSNTALKKGDIYNEAIKSGAKGLPFLKVLDAGGVEGIP 289 (452)
Q Consensus 210 r~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~ 289 (452)
....++.|++++|.+++|++|.+.+++|+.|+++++|+.. .++|++++. +.++++.+|++|++|+++..++ .+
T Consensus 5 ~i~~El~Dvtdif~~s~FkvF~~~l~~Gg~Vkai~vpg~a-~~~rk~~d~--l~~~ak~~g~~Gl~~i~~~~~~----~~ 77 (131)
T d1zq1c2 5 DIKEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFR-GLIGREIQP--GRRLGTEFADRAKKYVPGIFHI----DE 77 (131)
T ss_dssp GSCCCCEECTTTTTTCSCHHHHHHHHTTCEEEECEETTCT-TTSSSEEET--TEEHHHHHHHHHTTTCSCCEEG----GG
T ss_pred hcchhHhhHHHHhccCCcHhhHHHHcCCCEEEEEEccCcc-ccchhHHHh--HHHHHHHhccccceeEEeecCC----CC
Confidence 3567889999999999999999999999999999999865 478887763 5678899999999999976554 23
Q ss_pred cccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHHHHHHHHH
Q 043787 290 ALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRLRTFVAHE 339 (452)
Q Consensus 290 ~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~lR~~l~~~ 339 (452)
+..++|++++.++|.+++++++||+|||+||+...++++||+||..++..
T Consensus 78 ~~~k~l~~e~~~~l~~~l~~~~GD~il~~Ag~~~~v~~aLg~lr~Rl~~a 127 (131)
T d1zq1c2 78 LPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREA 127 (131)
T ss_dssp CSBTTBCHHHHHHHHHHTTCCSSCEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999999999999999999999996655543
|
| >d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.63 E-value=1.5e-16 Score=136.94 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=95.1
Q ss_pred ccccccccccccccCccccccccccCCCeEEEEEccCCCccc------chhhhccCcchHHHHHcCCCCccEEEEecCCC
Q 043787 211 FSLQLNDVSDIFLESPFRVFSDSLKSGGIIKVLCVPSGAKTY------SNTALKKGDIYNEAIKSGAKGLPFLKVLDAGG 284 (452)
Q Consensus 211 ~~~~~~~~~~~~~~~~f~~~~~~i~~~~~v~~~~~p~~~~~~------s~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~ 284 (452)
+++++.|++++|.+++|++|. +++.|+++++|+.++.. +|+..+ ++.++++.+|++||+|++
T Consensus 3 ~d~ei~Dvt~~f~~s~fkvf~----~g~~Vk~i~v~g~a~~~~~~~~~~rk~~d--~l~~~ak~~GakGL~~~~------ 70 (125)
T d2d6fc2 3 VEDKIFDVSEVFADTESRIIS----SAESVLAVKLRGFDGLIGVEIQPGRRLGT--EMADYAKKRGVSGIFHTD------ 70 (125)
T ss_dssp EEEEEECTTGGGTTCSCHHHH----TSSEEEEEEETTCTTTSSSEEETTEEHHH--HHHHHHHTTSCSCCEETT------
T ss_pred ccceeeEhHHHhCCCCCeeee----cCCEEEEEeccCccccccccccccHHHHH--HHHHHHHHcCCCceEEEe------
Confidence 467899999999999999985 47899999999865432 455543 356788999999999953
Q ss_pred ccccccccccCChhhHHHHHHHhCCCCCcEEEEEcCCchhHHHHHHHH--HHHHHHH
Q 043787 285 VEGIPALVSSLGPSNKEQLLIRCSAGPSDLILFAVGHPASVNKTLDRL--RTFVAHE 339 (452)
Q Consensus 285 ~~~~~~~~k~l~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~LG~l--R~~l~~~ 339 (452)
++..|+|++++.++|.+.+++++||+|||+||+...++++||+| |+++|.+
T Consensus 71 ----~~~~K~l~~e~~~~i~~~~~~~~GD~i~f~ag~~~~v~~~Lg~v~~Rl~~a~e 123 (125)
T d2d6fc2 71 ----ELPAYGITEEEVRGLRDAVGASQGDAVVMVAHERVTAENALREVIRRAEMAIQ 123 (125)
T ss_dssp ----TTTCSSCCHHHHHHHHHHTTCCSSSEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccchhcccHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Confidence 34479999999999999999999999999999999999999988 6666653
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=4.9e-08 Score=92.76 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhcCCeEEEcCceEeecC-CCCCc--cceeecccCCCcee--------------------ee--cCCHH
Q 043787 63 HKVVKLIRRYLEDVHGFVEIETPVLSRST-PEGAR--DYLVPSRVQPGTFY--------------------AL--PQSPQ 117 (452)
Q Consensus 63 s~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~eGa~--~~~v~~~~~~g~~~--------------------~L--~qSpQ 117 (452)
+.+++.|+++|.+ .||.+++.|.+.+.- +=++- +--+|+|.....+| -| ++|+-
T Consensus 20 ~~~~~~i~~if~~-~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~ 98 (266)
T d1jjca_ 20 TLMERELVEIFRA-LGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 98 (266)
T ss_dssp HHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHH-cCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHH
Confidence 4567788899988 999999999887541 10111 11123333222322 24 57886
Q ss_pred HHHHHHhhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecC--CCHHHHHHHHHHHHHHHHH
Q 043787 118 LFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 118 l~kq~Lm~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f--~~~~dlm~~~E~li~~i~~ 179 (452)
+...+.-...--|++++|+|||.|..+++|.|+|.|+|.-+.. ++..+++..++.+++.++.
T Consensus 99 q~r~~~~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~f~ 162 (266)
T d1jjca_ 99 QVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG 162 (266)
T ss_dssp HHHHHHHSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCCCceEEecccceecCCCCCcccccceeeeeeeccccccHHHHHHHHHHHHHHhcC
Confidence 6655432222258999999999999999999999999998776 5899999999999988774
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.47 E-value=2.8e-07 Score=88.80 Aligned_cols=117 Identities=18% Similarity=0.199 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C--C-----CccceeecccCCCceeeecCCHHHHHHHHhhcC---
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E--G-----ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSG--- 127 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e--G-----a~~~~v~~~~~~g~~~~L~qSpQl~kq~Lm~~g--- 127 (452)
.+++.++.+.+|+.+.+ .||.||.||.|.+... + | ..+.+.+.....++.|+|....+-..-.+....
T Consensus 30 ~~l~~~L~~~~~~~~~~-~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~s 108 (291)
T d1nyra4 30 ATIRREIERYIVDKEVS-MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHS 108 (291)
T ss_dssp HHHHHHHHHHHHHHHHH-TTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCB
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcEecc
Confidence 58889999999999988 9999999999998752 1 1 112222211123566788666555544443322
Q ss_pred ----CCceEEEeeeeecCCCCCC----CCcceeeeeeeecCCCHHHHHHHHHHHHHHH
Q 043787 128 ----FDKYYQIARCFRDEDLRAD----RQPEFTQLDMELAFTPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 128 ----~~rvfqi~~~FR~E~~~~~----r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i 177 (452)
--||||+++|||+|.+.+. |-.||+|.|... |++.++..+.+++++..+
T Consensus 109 y~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~-f~~~eq~~~e~~~~~~~~ 165 (291)
T d1nyra4 109 YRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMI 165 (291)
T ss_dssp GGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ccccceEEeeccceeecCCCcccccccceeeeeeeehee-ecCCcccHHHHHHHHHHH
Confidence 1499999999999987653 778999999964 567777777777666543
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=98.37 E-value=1.1e-06 Score=84.56 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCC---C-ccce-eecccCCCceeeec--CCHHHHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEG---A-RDYL-VPSRVQPGTFYALP--QSPQLFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eG---a-~~~~-v~~~~~~g~~~~L~--qSpQl~kq~L 123 (452)
...+.+..+...+++.|.. +||.+|+||++...+ ..| . ...+ ..++ .|+..+|+ .++|+-.-..
T Consensus 13 ~~~~~~~~i~~~l~~~f~~-~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~--~g~~l~LRpD~T~~iaR~~~ 89 (318)
T d1z7ma1 13 NQVKSLRQIEGRLRKLFSL-KNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH--EGQSITLRYDFTLPLVRLYS 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECT--TCCEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCEEEECCccchHHHhhccCCCcccccccceeEeecC--CccEEEeeccccchHHHHHH
Confidence 4467788899999999998 999999999996432 222 1 1222 2222 57777885 2355443221
Q ss_pred --hhcCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 043787 124 --MVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFLE 180 (452)
Q Consensus 124 --m~~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~~ 180 (452)
-.....|+|++|+|||.|.....|..||||+.+|..+.+-...-..+-.++..+++.
T Consensus 90 ~~~~~~~~r~~Y~g~vfR~~~~~~~r~rE~~Q~g~EiiG~~~~~ad~Eii~l~~e~l~~ 148 (318)
T d1z7ma1 90 QIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQ 148 (318)
T ss_dssp TCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCcccccccceeEEccccccccchhhhhheeccccchhhHHHHHHHHHHHHHHH
Confidence 112356999999999999988888889999999999875333222333444444444
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=2.2e-06 Score=82.39 Aligned_cols=115 Identities=18% Similarity=0.264 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-C--C-----CccceeecccCCCceeeecCCHH-HHHHHHhhcC--
Q 043787 59 ILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-E--G-----ARDYLVPSRVQPGTFYALPQSPQ-LFKQMLMVSG-- 127 (452)
Q Consensus 59 l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-e--G-----a~~~~v~~~~~~g~~~~L~qSpQ-l~kq~Lm~~g-- 127 (452)
.+++.+|.+.+|+.+.+ .||.||.||.|.+.+- + | ..+.+.... .+..|+|.-+.+ .+..+ +...
T Consensus 30 ~~l~~~L~~~i~e~~~~-~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~--~~~~~~L~Pt~e~~~~~~-~~~~~~ 105 (291)
T d1qf6a4 30 WTIFRELEVFVRSKLKE-YQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQI-FNQGLK 105 (291)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE--TTEEEEECSSSHHHHHHH-HTTSCE
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEEcccccchhHHhhhchhhhccchhccccc--cchhhcccccCcHHHHHH-HHcccc
Confidence 57889999999999988 9999999999998641 1 2 012222222 345677754443 34333 3321
Q ss_pred -----CCceEEEeeeeecCCCCC----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 128 -----FDKYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 128 -----~~rvfqi~~~FR~E~~~~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
--|+||+++|||+|.+.. -|-.||+|-|++. |...++.++.++++++.+-
T Consensus 106 sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~~e~~~~e~~~~~~~~~ 164 (291)
T d1qf6a4 106 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVY 164 (291)
T ss_dssp EGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred chhhcCeeEeecceeeecccccccccccccccceecccee-EecchhhHHHHHHHHHHHH
Confidence 348999999999996543 3778999999987 6666777777777765433
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.96 E-value=8.3e-06 Score=78.54 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CC-Cc-----cce-eecccCCCceeeecCCHHHHHHHHhh
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EG-AR-----DYL-VPSRVQPGTFYALPQSPQLFKQMLMV 125 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eG-a~-----~~~-v~~~~~~g~~~~L~qSpQl~kq~Lm~ 125 (452)
...+.|..+.+.+++.|.. +||.+|.||++...+. .| .. ..+ .-.. .+..-.|+..+..-....++
T Consensus 14 ~~~~~~~~i~~~l~~~f~~-~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~--~~~~~~lr~d~t~~~~r~~~ 90 (325)
T d1qe0a2 14 EDSKKWRYIENQLDELMTF-YNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK--GDRSITLRPEGTAAVVRSYI 90 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCEECBCCSEEEHHHHCC-----------CCEEECHH--HHCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhcc--ccccccccccccccHHHHHH
Confidence 3457889999999999998 9999999999976531 01 11 111 1011 12223344322222222111
Q ss_pred -c----C---CCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 126 -S----G---FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 126 -~----g---~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
. . .-|+|++|+|||.+.....|.-||||+.+|..+.+
T Consensus 91 ~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~rE~~Q~G~EiiG~~ 135 (325)
T d1qe0a2 91 EHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAE 135 (325)
T ss_dssp HTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCC
T ss_pred hhccccccccchhhheecceeeeccccCCccceeeecceeecCCc
Confidence 1 1 13899999999999998888899999999999974
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.95 E-value=1.7e-05 Score=76.46 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CCC---cc-ceeecccCCCceeeec--CCHHHHHHHHh
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EGA---RD-YLVPSRVQPGTFYALP--QSPQLFKQMLM 124 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eGa---~~-~~v~~~~~~g~~~~L~--qSpQl~kq~Lm 124 (452)
+..-.+.+..+...+++.|.+ +||.+|+||+|...+. .|. .. |...+. .|+...|+ ..||.-.-..-
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~-~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~--~g~~l~LRpD~T~~iar~~~~ 90 (327)
T d1wu7a2 14 YPEDMDVEKFIFKTAEEAAEA-FGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK--GGREVTLIPEATPSTVRMVTS 90 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT--TSCEEEECSCSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCeEeECCccchHhhccccCchhHHHHHhhhhcc--cchhhcccccccchhhhHhhh
Confidence 445678889999999999998 9999999999966531 121 11 222222 46766775 23554432210
Q ss_pred --hc-CCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCCH
Q 043787 125 --VS-GFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPL 163 (452)
Q Consensus 125 --~~-g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~~ 163 (452)
.. ..-|+|++|+|||.+.....|.-||+|+.+|..+.+-
T Consensus 91 ~~~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~~ 132 (327)
T d1wu7a2 91 RKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDS 132 (327)
T ss_dssp CTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCS
T ss_pred hhhccccceeeccCcceeccccccCCcchhhhhhhhhcCCcc
Confidence 01 2249999999999998888888899999999999753
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.93 E-value=3.8e-05 Score=71.62 Aligned_cols=119 Identities=11% Similarity=0.058 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC-CCCCc--------cceeeccc-C--CCceeeecCCHH-HHHHHH
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-PEGAR--------DYLVPSRV-Q--PGTFYALPQSPQ-LFKQML 123 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~eGa~--------~~~v~~~~-~--~g~~~~L~qSpQ-l~kq~L 123 (452)
.=.+++.+|.+.+++.+.+ .||.||.||+|.... .++.+ ++++.... . .++.|+|..+.+ .+..+.
T Consensus 38 ~G~~l~~~l~~~~~~~~~~-~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~ 116 (272)
T d1hc7a2 38 YGYAIWENIQQVLDRMFKE-TGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 116 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-cCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeehh
Confidence 3478999999999999988 999999999887655 33211 22322111 1 134577855443 222221
Q ss_pred hhcC------CCceEEEeeeeecCCCCCC--CCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 124 MVSG------FDKYYQIARCFRDEDLRAD--RQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 124 m~~g------~~rvfqi~~~FR~E~~~~~--r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
.... --|+||+++|||+|.+.+. |--+|+|.|.++...+.++.....+.++..
T Consensus 117 ~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (272)
T d1hc7a2 117 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSI 177 (272)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhHHHHHHHH
Confidence 1111 2489999999999987764 446999999998888887777766665543
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.86 E-value=3.6e-05 Score=72.61 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC---CCC-----c-cceeecccC---CCceeeecCCHHHHHHHHhh
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP---EGA-----R-DYLVPSRVQ---PGTFYALPQSPQLFKQMLMV 125 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~---eGa-----~-~~~v~~~~~---~g~~~~L~qSpQl~kq~Lm~ 125 (452)
=.+++.+|.+.+|+-+.+ .||.||.||.|.+.+. .|. . +++...... .+..|+|..+..-..-.+++
T Consensus 34 G~~i~~~i~~~i~~~~~~-~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~ 112 (268)
T d1nj8a3 34 GFKIRRYTFEIIRNLLDE-SGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMK 112 (268)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhhh
Confidence 358899999999999988 9999999999875431 121 2 333332211 13457886554333333233
Q ss_pred cC-------CCceEEEeeeeecCCCCCC---CCcceeeeee-eecCCCHHHHHHHHHHHHH
Q 043787 126 SG-------FDKYYQIARCFRDEDLRAD---RQPEFTQLDM-ELAFTPLDDMLRLNEDLIR 175 (452)
Q Consensus 126 ~g-------~~rvfqi~~~FR~E~~~~~---r~~EFtqLe~-e~~f~~~~dlm~~~E~li~ 175 (452)
.. --|+||+++|||+|.+... |-.||+|.|- +....+.++..+..+.++.
T Consensus 113 ~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~ 173 (268)
T d1nj8a3 113 LWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 173 (268)
T ss_dssp TTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHHH
Confidence 21 2489999999999965443 5679986654 4444578777776666654
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=4e-05 Score=73.48 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC------CCCC----ccceeecccCCCceeeecC--CHHHHHHHHh
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST------PEGA----RDYLVPSRVQPGTFYALPQ--SPQLFKQMLM 124 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~------~eGa----~~~~v~~~~~~g~~~~L~q--SpQl~kq~Lm 124 (452)
.-.+.|..+.+.+++.|.. +||.+|+||++...+ .+.. ..+..-.. ..|+...|+- ++++-.-...
T Consensus 14 ~~~~~~~~i~~~l~~~f~~-~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d-~~g~~l~Lr~D~T~~iaR~~~~ 91 (322)
T d1kmma2 14 GETAIWQRIEGTLKNVLGS-YGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED-RNGDSLTLRPEGTAGCVRAGIE 91 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEEC-TTSCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhh-cccccccccccccchhhHHHHh
Confidence 3457888899999999998 999999999997653 1111 12221111 2466666753 2454443321
Q ss_pred h----cCCCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 125 V----SGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 125 ~----~g~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
. ...-|+|++|+|||.+.....|.-||+|+++|..+.+
T Consensus 92 ~~~~~~~p~r~~y~g~v~r~~~~~~gr~re~~Q~g~EiiG~~ 133 (322)
T d1kmma2 92 HGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQ 133 (322)
T ss_dssp TTCSTTCCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCC
T ss_pred hhhhhhhhhhHhhcccccccCCCCCCccchhhhhhHHHhccc
Confidence 1 1234899999999999999989999999999999874
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.82 E-value=7.1e-05 Score=71.89 Aligned_cols=104 Identities=20% Similarity=0.366 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC----CCCc------c-ceeecccCCCceeeec--CCHHHHHH
Q 043787 55 MNHNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP----EGAR------D-YLVPSRVQPGTFYALP--QSPQLFKQ 121 (452)
Q Consensus 55 ~~~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~----eGa~------~-~~v~~~~~~g~~~~L~--qSpQl~kq 121 (452)
+....+.|..+.+.+++.|.. +||.+|+||+|...+. .|.. . |.... ..|+...|+ ..+++..-
T Consensus 12 ~p~~~~~~~~i~~~l~~~f~~-~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d--~~g~~l~LRpD~T~~iar~ 88 (324)
T d1h4vb2 12 FGKELRMHQRIVATARKVLEA-AGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQD--RGGRSLTLRPEGTAAMVRA 88 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSEEEGGGGCCCSCC------CCSCEEEC--TTSCEEEECCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhc--cCCcccccccccccHHHHH
Confidence 445678899999999999988 9999999999965531 1211 1 11111 146666665 23444443
Q ss_pred HHhhcC------CCceEEEeeeeecCCCCCCCCcceeeeeeeecCCC
Q 043787 122 MLMVSG------FDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 162 (452)
Q Consensus 122 ~Lm~~g------~~rvfqi~~~FR~E~~~~~r~~EFtqLe~e~~f~~ 162 (452)
.. ..+ .-|+|++|+|||.+.....|.-||+|+++|..+.+
T Consensus 89 ~~-~~~~~~~~~p~r~~Y~g~VfR~~~~~~gr~re~~Q~g~EiiG~~ 134 (324)
T d1h4vb2 89 YL-EHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSE 134 (324)
T ss_dssp HH-HTTGGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCC
T ss_pred HH-HhhhhhhchhhhheeeCcccccCcccCCCcceeccccccccCCC
Confidence 32 222 23999999999999988888899999999998863
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=97.61 E-value=0.0001 Score=68.97 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecC-C--CCC------ccce-eec--ccCCCceeeecCCHHHHHHHHhh
Q 043787 58 NILLRHKVVKLIRRYLEDVHGFVEIETPVLSRST-P--EGA------RDYL-VPS--RVQPGTFYALPQSPQLFKQMLMV 125 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~-~--eGa------~~~~-v~~--~~~~g~~~~L~qSpQl~kq~Lm~ 125 (452)
=.+++.+|.+.+|+.+ + .||.||.||.|.+.. - ... .+.+ +-. ....++.|+|.-+.+-..=.++.
T Consensus 32 G~~i~~~i~~~~~~~~-~-~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~ 109 (265)
T d1nj1a3 32 GFMIRKNTLKILRRIL-D-RDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFA 109 (265)
T ss_dssp HHHHHHHHHHHHHHHH-T-TTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-H-hcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEeee
Confidence 3577889999999876 6 899999999876443 1 111 1222 211 01124567886543332222222
Q ss_pred cC-------CCceEEEeeeeecCCCCCC---CCcceeeeeeeecC-CCHHHHHHHHHHHHH
Q 043787 126 SG-------FDKYYQIARCFRDEDLRAD---RQPEFTQLDMELAF-TPLDDMLRLNEDLIR 175 (452)
Q Consensus 126 ~g-------~~rvfqi~~~FR~E~~~~~---r~~EFtqLe~e~~f-~~~~dlm~~~E~li~ 175 (452)
.. --|+||+++|||+|.+.+. |--||||++-..++ .+.++.....+.++.
T Consensus 110 ~~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~~ 170 (265)
T d1nj1a3 110 LWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVE 170 (265)
T ss_dssp HHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eeeccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHHHHhhhhHH
Confidence 11 1489999999999955443 66799877655544 577766665555443
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=5.5e-05 Score=73.50 Aligned_cols=121 Identities=19% Similarity=0.243 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCeEEEcCceEeecCC---CCCc----cceee------------------ccc----CCC
Q 043787 58 NILLRHKVVKLIRRYLE-DVHGFVEIETPVLSRSTP---EGAR----DYLVP------------------SRV----QPG 107 (452)
Q Consensus 58 ~l~~Rs~i~~~iR~ff~-~~~gF~EV~TPiL~~~~~---eGa~----~~~v~------------------~~~----~~g 107 (452)
=.++|..|.+.+|+.|. .+.|+.||.||+|++... .|-. +..+. +.. ..+
T Consensus 38 G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (331)
T d1b76a2 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRG 117 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGG
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccccC
Confidence 36899999999999873 337999999999987641 1100 10010 000 012
Q ss_pred -ceeeec-CCHHHHHHH---Hhhc--C-CCceEEEeeeeecCCCCCC---CCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 108 -TFYALP-QSPQLFKQM---LMVS--G-FDKYYQIARCFRDEDLRAD---RQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 108 -~~~~L~-qSpQl~kq~---Lm~~--g-~~rvfqi~~~FR~E~~~~~---r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
..|.++ +.+..+... +..+ . --|++|||.|||+|-+... |--||||-|++. |++.++..+.+...+..
T Consensus 118 ~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~-F~~~~q~~~~~~~~~~~ 196 (331)
T d1b76a2 118 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEE 196 (331)
T ss_dssp GEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred CcccccCcchhhHHHHHHhHHhccccccchhhhhccceecccccccccccccchhhhhhhhh-hcCCcchhHHHHHHHHH
Confidence 234343 333333322 1112 1 2489999999999976432 224999999975 67777777777666665
Q ss_pred HHH
Q 043787 177 IFL 179 (452)
Q Consensus 177 i~~ 179 (452)
+.+
T Consensus 197 ~~~ 199 (331)
T d1b76a2 197 RLK 199 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=97.11 E-value=0.0018 Score=62.03 Aligned_cols=118 Identities=16% Similarity=0.223 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEcCceEeecCC-CCCc--c-cee-ecccCCCceeee-cCCHHHHHHHHhhc----
Q 043787 57 HNILLRHKVVKLIRRYLEDVHGFVEIETPVLSRSTP-EGAR--D-YLV-PSRVQPGTFYAL-PQSPQLFKQMLMVS---- 126 (452)
Q Consensus 57 ~~l~~Rs~i~~~iR~ff~~~~gF~EV~TPiL~~~~~-eGa~--~-~~v-~~~~~~g~~~~L-~qSpQl~kq~Lm~~---- 126 (452)
...++..++++.+.+++.+ +||+||.||.|..... +|++ + |.. .+.. .+..+|| ++|-.-..-+ ...
T Consensus 54 ~~a~Le~AL~~~~ld~~~~-~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~-~~~~~~LipTsE~~l~~~-~~~~i~~ 130 (311)
T d1seta2 54 DLALYELALLRFAMDFMAR-RGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI-AETDLYLTGTAEVVLNAL-HSGEILP 130 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB-TTSSEEECSSTHHHHHHT-TTTCEEE
T ss_pred HHHHHHHHHHHHHHHhhhc-ccceEEeechhhccchhhhcccccccccccccc-cccceeecccccchhhhh-hhhhhhh
Confidence 3457778888999999988 9999999999988752 2222 1 110 1111 2333456 4664443332 221
Q ss_pred --C-CCceEEEeeeeecCCCCC-------CCCcceeeeeeeecC-CCHHHHHHHHHHHHHHH
Q 043787 127 --G-FDKYYQIARCFRDEDLRA-------DRQPEFTQLDMELAF-TPLDDMLRLNEDLIRKI 177 (452)
Q Consensus 127 --g-~~rvfqi~~~FR~E~~~~-------~r~~EFtqLe~e~~f-~~~~dlm~~~E~li~~i 177 (452)
. --|++++++|||.|.+.. -|..+|+.+|....- .+.++-....+.++...
T Consensus 131 ~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~ 192 (311)
T d1seta2 131 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 192 (311)
T ss_dssp GGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred hhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHH
Confidence 1 238999999999997442 255899999986443 36677766666666543
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=96.95 E-value=0.0014 Score=61.26 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=54.1
Q ss_pred HhhcCCeEEEcCceEeecCCCCCccceeecccCCCceeeec--CCHHHHHHHHhhcC---CCceEEEeeeeecCCCCCCC
Q 043787 73 LEDVHGFVEIETPVLSRSTPEGARDYLVPSRVQPGTFYALP--QSPQLFKQMLMVSG---FDKYYQIARCFRDEDLRADR 147 (452)
Q Consensus 73 f~~~~gF~EV~TPiL~~~~~eGa~~~~v~~~~~~g~~~~L~--qSpQl~kq~Lm~~g---~~rvfqi~~~FR~E~~~~~r 147 (452)
..+ +||.+|.||++......... +|. + ..|+-..|+ -++|.-+-. +..+ --|+|.+|+|||.+..+
T Consensus 16 ~~~-~Gy~~i~tP~~E~~e~~~~~-~F~-D--~~g~~l~LRpD~T~~iaR~~-~~~~~~~p~k~~Y~g~VfR~~~~~--- 86 (275)
T d1usya_ 16 ATK-KGFSPFFVPALEKAEEPAGN-FFL-D--RKGNLFSIREDFTKTVLNHR-KRYSPDSQIKVWYADFVYRYSGSD--- 86 (275)
T ss_dssp HHH-TTCEECCCCSEEECSSCCSS-CEE-E--TTSCEEEECCCHHHHHHHHH-TTCTTCCCEEEECCEEEEEEETTE---
T ss_pred HHH-cCCceeecCccccccccccc-eeE-c--CCCCEEEECCCCcHHHHHHH-HHcCCCCCeeeeEEeeEEEeCCCc---
Confidence 346 99999999999887644333 332 1 247777776 235555422 1112 23999999999987532
Q ss_pred CcceeeeeeeecCC
Q 043787 148 QPEFTQLDMELAFT 161 (452)
Q Consensus 148 ~~EFtqLe~e~~f~ 161 (452)
.-||+|+.+|..+.
T Consensus 87 ~re~~Q~G~EiiG~ 100 (275)
T d1usya_ 87 LVAEYQLGLEKVPR 100 (275)
T ss_dssp EEEEEEEEEEEESC
T ss_pred ccceeecCceeech
Confidence 25999999999886
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.49 E-value=0.028 Score=52.85 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=37.0
Q ss_pred CceEEEeeeeecCCCC--C----CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHHH
Q 043787 129 DKYYQIARCFRDEDLR--A----DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIFL 179 (452)
Q Consensus 129 ~rvfqi~~~FR~E~~~--~----~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~~ 179 (452)
-++-|||+|||+|.+. + -|--||||+|++. |++.++..+..+.++.....
T Consensus 140 f~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~-F~~pe~~~~~~~~~~~~~~~ 195 (290)
T d1g5ha2 140 FGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRLL 195 (290)
T ss_dssp EEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeccccccccccCCcccccceeeEeEeeeeEE-EeCCcchHHHHHHHHHHHHH
Confidence 4799999999977543 2 2446999999975 77888888888777766554
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=92.32 E-value=0.056 Score=52.73 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=32.5
Q ss_pred ceEEEeeeeecCCCCC---CCCcceeeeeeeecCCCHHHHHHHHHHHHHHHH
Q 043787 130 KYYQIARCFRDEDLRA---DRQPEFTQLDMELAFTPLDDMLRLNEDLIRKIF 178 (452)
Q Consensus 130 rvfqi~~~FR~E~~~~---~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~i~ 178 (452)
-+.|||+|||||=+-. -|--||||.|+|. |++..+-.....-.+...+
T Consensus 211 GiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~-Fv~P~~~~~~~~yw~~~~~ 261 (394)
T d1atia2 211 GIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEERL 261 (394)
T ss_dssp EEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCcccCCcccccceeeeeEE-EEeCCcchHHHHHHHHHHH
Confidence 3899999999994332 2556999999987 5565555554444444333
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=87.32 E-value=1.1 Score=39.01 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcCCeEEEcCceEeecCCC---C-Ccc-ceeecccCCCceeeecCC--HHHHHHHHh--hcCC-C--ceEE
Q 043787 66 VKLIRRYLEDVHGFVEIETPVLSRSTPE---G-ARD-YLVPSRVQPGTFYALPQS--PQLFKQMLM--VSGF-D--KYYQ 133 (452)
Q Consensus 66 ~~~iR~ff~~~~gF~EV~TPiL~~~~~e---G-a~~-~~v~~~~~~g~~~~L~qS--pQl~kq~Lm--~~g~-~--rvfq 133 (452)
.+.+|++|.. .||.||-|-.+++..-- + ..+ ..+.... ....=+|++| |.+-+-+-. ..|. + |+|+
T Consensus 21 ~~~ir~~L~~-~Gf~Ev~tysf~s~~~~~~~~~~~~~i~l~NPi-s~e~~~lR~sLlpgLL~~~~~N~~r~~~~~~~lFE 98 (207)
T d1jjcb5 21 EQRLREVLSG-LGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPL-APEKAALRTHLFPGLVRVLKENLDLDRPERALLFE 98 (207)
T ss_dssp HHHHHHHHHH-HTCEECCCCSEECTTHHHHTTCCCCSCEESSCS-SGGGSEECSCSHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred HHHHHHHHHH-CCcchhcCCCcCCHHHHHhhcCCCCcEEEeCCc-chhhhhhhhhcchHHHHHHHhCcccccccceeeEe
Confidence 4568999988 99999999999875411 1 111 1111111 1122258888 676665432 2243 3 7899
Q ss_pred EeeeeecCCCCC-------CCCcceeeeeeeecCCCHHHHHHHHHHHHHH
Q 043787 134 IARCFRDEDLRA-------DRQPEFTQLDMELAFTPLDDMLRLNEDLIRK 176 (452)
Q Consensus 134 i~~~FR~E~~~~-------~r~~EFtqLe~e~~f~~~~dlm~~~E~li~~ 176 (452)
||++|+...... .+.++.|+-. .-+|+.++...++.++..
T Consensus 99 iG~vf~~~~~~~~~~~~~g~~~~~~~~~~---~~~df~~~Kg~v~~ll~~ 145 (207)
T d1jjcb5 99 VGRVFREREETHLAGLLFGEGVGLPWAKE---RLSGYFLLKGYLEALFAR 145 (207)
T ss_dssp EEEEESSSEEEEEEEEEEESCBSCTTSSC---CBCHHHHHHHHHHHHHHH
T ss_pred eeeeeeccccccchhhhhhcccccccccc---cchhHHHHHHHHHHHHHh
Confidence 999998753211 1112222211 113566777777776643
|