Citrus Sinensis ID: 043831

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCREDPATVANGIK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccEEEEEccEEEEEccHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccEEEEccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccEEEcccccccccEEEEEccccccccccEEEEEcccccccccccccHHHHHHcccccccccccEEEEEEEccccccccHHccccEEEEEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHcHHHHHHHHHHHHHcccccEEEEccccEEEEccHHHHHHHHHHcccccccccccccHHHEccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHcccccHHEEEEEEEEEcccccEEccccEEccEEEEEcccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHcccEEEEEEEEccccccccHHHHHHcEEEEEEEEEcccccccccHHHHHcccc
Coil and Loop (DISEMBL)
mgprwkgraseakssgrshvqNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLkivgednstkndDELWQYMKAKKETFPLLYKAYSHlrkknwvvrsgsqygvdfvayrhhpslvhSEYAVLVLaegedgengrlrvWSDIHCTVRLCGGVAKTLLILTINkngqgtatpsCLEQYAVEertisrwspeqcredpatvangik
Flexible Loop (DISEMBL)
mgprwkgraseakssgrshvQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINkngqgtatpsCLEQYAVEErtisrwspeqcredpatvangik
Low Complexity Region (SEG)
MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCREDPATVANGIK
Disordered region (IsUnstruct)
*********************NHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEE***********************
Disordered Region (DISOPRED)
***************************************AGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWS****************
Disordered Region (DISEMBL)
******************HVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCREDPATVANGIK
Disordered Region (DISPRO)
******************HVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSP***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCREDPATVANGIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9LSS3	250	tRNA-splicing endonucleas	yes	no	0.958	0.932	0.539	5e-70
Q9M1E8	237	tRNA-splicing endonucleas	no	no	0.942	0.966	0.558	2e-69
Q5Z6B1	293	Probable tRNA-splicing en	no	no	0.954	0.791	0.514	5e-62
Q6P7W5	460	tRNA-splicing endonucleas	yes	no	0.662	0.35	0.333	1e-20
Q5M954	463	tRNA-splicing endonucleas	yes	no	0.662	0.347	0.315	2e-19
Q8NCE0	465	tRNA-splicing endonucleas	no	no	0.662	0.346	0.297	9e-17
Q5ZIN2	461	tRNA-splicing endonucleas	yes	no	0.625	0.329	0.316	1e-16
Q8TFH7	380	Probable tRNA-splicing en	yes	no	0.448	0.286	0.28	1e-10
Q74ZY5	356	tRNA-splicing endonucleas	yes	no	0.440	0.300	0.319	1e-09
Q9P6Y2	633	Probable tRNA-splicing en	N/A	no	0.514	0.197	0.262	3e-09

>sp|Q9LSS3|SEN22_ARATH tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana GN=SEN2 PE=2 SV=1

 Score =  264 bits (674), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 6/239 (2%)

Query: 1   MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRAC 60
           M PRWK + +EAK+      ++         ++E+   L+  + LLAVE EQ ELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 61  FGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL 120
           FGR +++AEK K+W QL  EE F+L ++LKC+KI  +    +N+ + W YMK+K+  FP+
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSD 180
            +KAYSHLR KNWV+RSG QYGVDFVAYRHHPSLVHSEY+VLV    + G++ RLRVWSD
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV----QSGDSDRLRVWSD 176

Query: 181 IHCTVRLCGGVAKTLLILTINKN--GQGTATPSCLEQYAVEERTISRWSPEQCREDPAT 237
           IHC VRL G VAKTLL L +N N  G+      CLE + VEE+TISRWSPE  RED +T
Sbjct: 177 IHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 235

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 7EC: .EC: 9

>sp|Q9M1E8|SEN21_ARATH tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana GN=SEN1 PE=2 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/238 (55%), Positives = 167/238 (70%), Gaps = 9/238 (3%)

Query: 1   MGPRWKGRASEAKSSGR--SHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNR 58
           M PRWK + +EAK+     S   + LR +    Q+EA   L+  + LL+VE+E+ ELL+R
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSL--TQTEALGFLSSCNVLLSVESEEAELLDR 58

Query: 59  ACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118
            CFGR +V AEKDK+W QL  EE F+L + LKC+KI     S +N+ +LW+ M + K+ F
Sbjct: 59  CCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSFKQDF 118

Query: 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVW 178
            +LYKAYSHLR KNW+VRSG QYGVDFV YRHHPSLVHSEYAVLV +    G N RL+VW
Sbjct: 119 AILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQS---IGGNDRLKVW 175

Query: 179 SDIHCTVRLCGGVAKTLLILTINK--NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
           SDIHC+VRL G VAK+LL+L +N+  N +    P CLE Y VEE+TI RWSPE  RED
Sbjct: 176 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

>sp|Q5Z6B1|SEN2_ORYSJ Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica GN=Os06g0530700 PE=2 SV=1

 Score =  237 bits (605), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/241 (51%), Positives = 161/241 (66%), Gaps = 9/241 (3%)

Query: 2   GPRWK----GR--ASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTEL 55
           GPRWK    G+  AS A ++  S + + L+ +F+S +  A     G SA+L V  EQ  +
Sbjct: 5   GPRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQAVI 64

Query: 56  LNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKK 115
           LNRA FG  I  A   K W+QL  EE FYLCH+L C+++   DN   ++ ELW Y ++  
Sbjct: 65  LNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVDSLDNKQMSEIELWDYFRSGS 124

Query: 116 ETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGEN--G 173
           E+FP +YKAY+HLR KNWVVRSG QYG DFVAYRHHP+LVHSE+AV+V+ EG +  N  G
Sbjct: 125 ESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCG 184

Query: 174 RLRVWSDIHCTVRLCGGVAKTLLILTI-NKNGQGTATPSCLEQYAVEERTISRWSPEQCR 232
           RL VWSD+ C +R  G VAKTLL+LTI + +    ++P CLEQ  V ERTI+RW  +QCR
Sbjct: 185 RLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCR 244

Query: 233 E 233
           E
Sbjct: 245 E 245

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

>sp|Q6P7W5|SEN2_MOUSE tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus GN=Tsen2 PE=1 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 7/168 (4%)

Query: 73  QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
           ++ QL +EE F+L ++L CL I  E        +LWQ   A + TF   Y AY + R K 
Sbjct: 290 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 348

Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV--LAEGEDGENGRLRVWSDIHCTVRLCGG 190
           WV + G +YG D + YR  P   H+ Y+V++  L +  +G   R   W  +    R+ G 
Sbjct: 349 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELLDDNYEGSLRRPFSWKSLAALSRVSGN 408

Query: 191 VAKTLLILTINKNGQGTA----TPSCLEQYAVEERTISRWSPEQCRED 234
           V+K L++  + K    TA    TP C+++  V+E  +SRW   + R D
Sbjct: 409 VSKELMLCYLIKPSTMTAEDMETPECMKRIQVQEVILSRWVSSRERSD 456

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3'-end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3'-end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

>sp|Q5M954|SEN2_RAT tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus GN=Tsen2 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 73  QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
           ++ QL +EE F+L ++L CL I  E        +LWQ   A + TF   Y AY + R K 
Sbjct: 293 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 351

Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV--LAEGEDGENGRLRVWSDIHCTVRLCGG 190
           WV + G +YG D + YR  P   H+ Y+V++  + +  +G   R   W  +    R+ G 
Sbjct: 352 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDNFEGSLRRPFSWKSLAALSRVSGN 411

Query: 191 VAKTLLILTINK----NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
           V+K L++  + K      +   TP C+ +  V+E  +SRW   + R D
Sbjct: 412 VSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWVSSRERSD 459

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3'-end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3'-end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

>sp|Q8NCE0|SEN2_HUMAN tRNA-splicing endonuclease subunit Sen2 OS=Homo sapiens GN=TSEN2 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 73  QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
           ++ QL +EE F+L ++L CL I  E        +LW+     + TF   Y AY + R K 
Sbjct: 295 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIVKLWKAFTVVQPTFRTTYMAYHYFRSKG 353

Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV--LAEGEDGENGRLRVWSDIHCTVRLCGG 190
           WV + G +YG D + YR  P   H+ Y+V++  + +  +G   R   W  +    R+   
Sbjct: 354 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVN 413

Query: 191 VAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRWSPEQCRED 234
           V+K L++  + K    T     +P C+++  V+E  +SRW   + R D
Sbjct: 414 VSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSD 461

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Isoform 1 probably carries the active site for 5'-splice site cleavage. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3'-end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3'-end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events. Isoform 2 is responsible for processing a yet unknown RNA substrate. The complex containing isoform 2 is not able to cleave pre-tRNAs properly, although it retains endonucleolytic activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

>sp|Q5ZIN2|SEN2_CHICK tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus GN=TSEN2 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 73  QWYQLGMEEGFYLCHSLKCLKIV-GEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKK 131
           ++ QL +EE F+L ++L CL +  GE+  T    +LW+     K +F   Y AY + R K
Sbjct: 291 EYLQLSLEEAFFLVYALGCLTVYYGEEPLTIL--KLWEIFSEVKPSFKTTYMAYHYFRSK 348

Query: 132 NWVVRSGSQYGVDFVAYRHHPSLVHSEYAVL--VLAEGEDGENGRLRVWSDIHCTVRLCG 189
            WV + G +YG D + YR  P   H+ Y+V+  ++ +  +G   R   W  +    R   
Sbjct: 349 GWVPKVGLKYGTDLLLYRKGPPFYHASYSVIAELVDDNFEGSLRRPLSWMSLSGLNRTTV 408

Query: 190 GVAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRW 226
             +K LL+  + K    T    ATP CL++  V+E  ++RW
Sbjct: 409 NASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRW 449

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3'-end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3'-end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

>sp|Q8TFH7|SEN2_SCHPO Probable tRNA-splicing endonuclease subunit sen2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen2 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 16/125 (12%)

Query: 124 AYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHC 183
           AY + R++ WVV++G+++ VDF+ Y+  P   H+E+A+L++    + +   ++ W ++HC
Sbjct: 257 AYFYFRQQGWVVKNGTKFSVDFLLYKKGPVFSHAEFAILLIPCVGNKQKYNMQ-WHEVHC 315

Query: 184 TVRLCGGVAKTLLILTI--------NKNGQGTAT-------PSCLEQYAVEERTISRWSP 228
             R+   V K+L++  +        NK  +  A+        S L QY +   T+ RW P
Sbjct: 316 LNRVIAQVKKSLILCYVQCPSIEDFNKIWKNQASMNEWDWAESVLRQYLIRCVTLRRWVP 375

Query: 229 EQCRE 233
            + R+
Sbjct: 376 SRNRD 380

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. This subunit may anchor the endonuclease complex to the nuclear membrane. Probably carries the active site for 5'-splice site cleavage.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

>sp|Q74ZY5|SEN2_ASHGO tRNA-splicing endonuclease subunit SEN2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEN2 PE=3 SV=2

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)

Query: 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSD 180
           LY AY H R   W VRSG ++G DF+ YR  P   H+E++V+VLA  E  +      ++ 
Sbjct: 241 LYAAYHHYRSHGWCVRSGIKFGCDFLLYRRGPPFHHAEFSVMVLAPDERHD------YTW 294

Query: 181 IHCTVRLCGGVAKTLLILTINKNGQGTATPSC------LEQYA---VEERTISRWSPEQC 231
                R+ GG  KTL++  + +        +       +E +A   V E    RW P + 
Sbjct: 295 YSTVARVVGGAQKTLVLAYVARRAAADQLAALWHARRYMEAFALFEVHELVYRRWLPGKN 354

Query: 232 RE 233
           RE
Sbjct: 355 RE 356

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. This subunit may anchor the endonuclease complex to the nuclear membrane. Probably carries the active site for 5'-splice site cleavage.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

>sp|Q9P6Y2|SEN2_NEUCR Probable tRNA-splicing endonuclease subunit sen-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sen-2 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 71  DKQWYQLGMEEGFYLCHSLKCLKIVGE-DNSTKNDDELWQYMKA-------------KKE 116
           DK+ +QL  EE F+L   L  L++V     +  ++++L   ++A              ++
Sbjct: 444 DKEHFQLAPEEAFFLTFGLGALRVVDPVTEAPISNEQLLIKLRANSYFPPRSVDNLSPED 503

Query: 117 TFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRL- 175
            F + Y  Y H R   WV R G ++GVD++ Y+  P   HSE+ ++V+    D       
Sbjct: 504 PFLVQYAVYHHFRSLGWVPRHGIKFGVDWIIYQRGPVFDHSEFGIMVVPSFSDPRWSEFE 563

Query: 176 -----RVWSDIHCTVRLCGGVAKTL 195
                + WS +    R+   V K+L
Sbjct: 564 HEESKKTWSWLMGVNRVLSHVLKSL 588

Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. This subunit may anchor the endonuclease complex to the nuclear membrane. Probably carries the active site for 5'-splice site cleavage.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
225435209	242	PREDICTED: tRNA-splicing endonuclease su	0.950	0.954	0.685	2e-92
255570767	237	tRNA-splicing endonuclease subunit Sen2-	0.958	0.983	0.682	2e-90
224105207	235	predicted protein [Populus trichocarpa]	0.950	0.982	0.679	4e-88
118483103	235	unknown [Populus trichocarpa]	0.950	0.982	0.675	1e-87
449463691	281	PREDICTED: tRNA-splicing endonuclease su	0.971	0.839	0.651	3e-87
449529481	281	PREDICTED: tRNA-splicing endonuclease su	0.971	0.839	0.647	8e-87
357509813	246	tRNA-splicing endonuclease subunit Sen2-	0.958	0.947	0.576	3e-76
356508730	255	PREDICTED: tRNA-splicing endonuclease su	0.967	0.921	0.570	4e-75
297746203	232	unnamed protein product [Vitis vinifera]	0.868	0.909	0.581	2e-74
358248502	255	uncharacterized protein LOC100810335 [Gl	0.962	0.917	0.564	1e-72

>gi|225435209|ref|XP_002284873.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 [Vitis vinifera]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/235 (68%), Positives = 191/235 (81%), Gaps = 4/235 (1%)

Query: 1   MGPRWKGRASEAKSSGR--SHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNR 58
           MGPRWKG+ +EAK+     S + + L+ +    +S++  +L+G S LL   AEQTELLNR
Sbjct: 1   MGPRWKGKGAEAKALAEPMSEIVSQLQSSL--TRSDSQGLLSGCSVLLEAGAEQTELLNR 58

Query: 59  ACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118
           +CFGR ++TAEKDKQW+QL MEE FYLCHSL CLKIVGEDN  KND+ELWQYMK+++ETF
Sbjct: 59  SCFGRPVITAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHLKNDEELWQYMKSRRETF 118

Query: 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVW 178
           P  Y AYSHLR KNWVVRSGSQYGVDFVAYRHHP+LVHSEYAVLVL+E  +  NGRLRVW
Sbjct: 119 PDFYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHSEYAVLVLSEENENANGRLRVW 178

Query: 179 SDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCRE 233
           SD  CT+RLCG VAKTLL++ INKNG G  TP CL++Y+VEERTI+RWS EQCRE
Sbjct: 179 SDFDCTIRLCGSVAKTLLVIHINKNGHGATTPLCLKKYSVEERTITRWSAEQCRE 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570767|ref|XP_002526336.1| tRNA-splicing endonuclease subunit Sen2-2, putative [Ricinus communis] gi|223534295|gb|EEF36007.1| tRNA-splicing endonuclease subunit Sen2-2, putative [Ricinus communis]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/233 (68%), Positives = 187/233 (80%)

Query: 1   MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRAC 60
           MG RWKG+ SEAK++     +   +     IQ +AH +L+G S LLAVE+EQTELL RAC
Sbjct: 1   MGTRWKGKGSEAKAAADPMSKIISQLCSSLIQFDAHGLLSGCSVLLAVESEQTELLTRAC 60

Query: 61  FGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL 120
           FGR ++T+EKDKQW+QLG+EE FYL +SLKC+KIV EDN   +D ELWQ+MK++K TFP 
Sbjct: 61  FGRPMITSEKDKQWFQLGIEEAFYLSYSLKCIKIVSEDNCCISDLELWQFMKSQKPTFPD 120

Query: 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSD 180
            YKAYSHLR KNWVVR GSQYGVDFVAYRHHPSLVHSEYAVLVL+E +   NGRLRVWSD
Sbjct: 121 FYKAYSHLRMKNWVVRPGSQYGVDFVAYRHHPSLVHSEYAVLVLSEEDANANGRLRVWSD 180

Query: 181 IHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCRE 233
            HCT+RLCG VAKTLL+L INKN  GT  PSCLE+Y+VEERT +RWSP+Q RE
Sbjct: 181 FHCTLRLCGSVAKTLLVLGINKNCHGTTLPSCLEKYSVEERTFARWSPQQSRE 233

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105207|ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|222850135|gb|EEE87682.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 159/234 (67%), Positives = 186/234 (79%), Gaps = 3/234 (1%)

Query: 1   MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRAC 60
           MGPRWKG+ +EAK+      +   +     +QS A A L+G S LLAVE EQTELL RAC
Sbjct: 1   MGPRWKGKGAEAKALADPMSEIVSQLQSSLLQSNACASLSGCSVLLAVETEQTELLTRAC 60

Query: 61  FGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL 120
           FG+ I+TAEK+KQW+QLG+EE FYLC+SLKCLKI GEDN  KND +LW YMK KKE FP 
Sbjct: 61  FGKPIITAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNFVKNDLDLWLYMKLKKEKFPD 120

Query: 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSD 180
            YKAYSHLR KNWV+R G QYGVDFVAY+HHPSLVHSEYAV+VL+E   G+ GRLRVWSD
Sbjct: 121 FYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIVLSE---GDTGRLRVWSD 177

Query: 181 IHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
            HCT+RLCG VAKTLLIL ++KNG G  +PSCLE+Y+VEE TI+RWSPEQ R+D
Sbjct: 178 FHCTIRLCGSVAKTLLILNVDKNGHGAISPSCLERYSVEECTITRWSPEQSRDD 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483103|gb|ABK93461.1| unknown [Populus trichocarpa]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/234 (67%), Positives = 186/234 (79%), Gaps = 3/234 (1%)

Query: 1   MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRAC 60
           MGPRWKG+ +EAK+      +   +     +QS A A L+G S LLAVE E+TELL RAC
Sbjct: 1   MGPRWKGKGAEAKALADPMSEIVSQLQSSLLQSNACASLSGCSVLLAVETEKTELLTRAC 60

Query: 61  FGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL 120
           FG+ I+TAEK+KQW+QLG+EE FYLC+SLKCLKI GEDN  KND +LW YMK KKE FP 
Sbjct: 61  FGKPIITAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNFVKNDLDLWLYMKLKKEKFPD 120

Query: 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSD 180
            YKAYSHLR KNWV+R G QYGVDFVAY+HHPSLVHSEYAV+VL+E   G+ GRLRVWSD
Sbjct: 121 FYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIVLSE---GDTGRLRVWSD 177

Query: 181 IHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
            HCT+RLCG VAKTLLIL ++KNG G  +PSCLE+Y+VEE TI+RWSPEQ R+D
Sbjct: 178 FHCTIRLCGSVAKTLLILNVDKNGHGAISPSCLERYSVEECTITRWSPEQSRDD 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463691|ref|XP_004149565.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-2-like [Cucumis sativus]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/241 (65%), Positives = 182/241 (75%), Gaps = 5/241 (2%)

Query: 1   MGPRWKGRASEAKSSGR--SHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNR 58
           M PRWKG+ASEAK+     S+   HL+ +F  I S A  +L+G   L   + EQT+LLNR
Sbjct: 43  MAPRWKGKASEAKALADPISNTLLHLQSSF--IHSNAQGLLSGSIILYLADEEQTDLLNR 100

Query: 59  ACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118
            CFGR I+TAEKDKQW+Q GMEE FYL + L CLKIV   +  KN  ELW+YMK +K TF
Sbjct: 101 TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATF 160

Query: 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGE-NGRLRV 177
           P  Y AY HLR KNWVVR GSQYGVDFVAYRHHPSLVHSE+AVLVL EG D   NGRLRV
Sbjct: 161 PEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRV 220

Query: 178 WSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCREDPAT 237
           WSD  CTVRLCG VAKTLL+LT+N NG G  +PSCL+ Y++EERT++RWSPEQCRE+PA 
Sbjct: 221 WSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK 280

Query: 238 V 238
           V
Sbjct: 281 V 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529481|ref|XP_004171728.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-2-like [Cucumis sativus]

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 156/241 (64%), Positives = 181/241 (75%), Gaps = 5/241 (2%)

Query: 1   MGPRWKGRASEAKSSGR--SHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNR 58
           M PRWKG+ASEAK+     S+   HL+ +F  I S A  +L+G   L   + EQT+LLNR
Sbjct: 43  MAPRWKGKASEAKALADPISNTVLHLQSSF--IHSNAQGLLSGSIILYLADEEQTDLLNR 100

Query: 59  ACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118
            CFGR I+TAEKDKQW+Q GMEE FYL + L CLKIV   +  KN  ELW+YMK +K TF
Sbjct: 101 TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATF 160

Query: 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGE-NGRLRV 177
           P  Y AY HLR KNWVVR GSQYGVDFVAYRHHPSLVHSE+AVLVL E  D   NGRLRV
Sbjct: 161 PEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRV 220

Query: 178 WSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCREDPAT 237
           WSD  CTVRLCG VAKTLL+LT+N NG G  +PSCL+ Y++EERT++RWSPEQCRE+PA 
Sbjct: 221 WSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK 280

Query: 238 V 238
           V
Sbjct: 281 V 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509813|ref|XP_003625195.1| tRNA-splicing endonuclease subunit Sen2-2 [Medicago truncatula] gi|124360132|gb|ABN08148.1| tRNA intron endonuclease, catalytic C-terminal [Medicago truncatula] gi|355500210|gb|AES81413.1| tRNA-splicing endonuclease subunit Sen2-2 [Medicago truncatula]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 140/243 (57%), Positives = 169/243 (69%), Gaps = 10/243 (4%)

Query: 1   MGPRWKGRASEAKSSGRSHVQNHLRFTFLS------IQSEAHAVLAGYSALLAVEAEQTE 54
           M PRWKG+ +++K    +          +S      +QS     L+     L V+AEQ +
Sbjct: 1   MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLTVQAEQLD 60

Query: 55  LLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKI---VGEDNSTKNDDELWQYM 111
           LL++ACFGR +   EKD  W+QL +EE FYLC+SLKCLKI   VG D    ND+ELW Y 
Sbjct: 61  LLDKACFGRPVRIVEKDMYWFQLTVEEAFYLCYSLKCLKIKINVGADTGPLNDEELWHYF 120

Query: 112 KAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGE 171
           ++KKETFP  YKAYSHLR KNWVVRSG+QYGVD + YRHHP+ VHSEY VLVL+  +DG+
Sbjct: 121 RSKKETFPYFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPARVHSEYGVLVLSHDKDGD 180

Query: 172 -NGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQ 230
            NGRLRVWSD+HCT RL GGVAKTLL+L +NKNG    +  CL  Y VEERTISRWSPEQ
Sbjct: 181 LNGRLRVWSDVHCTTRLLGGVAKTLLVLYVNKNGNNDESLLCLTNYTVEERTISRWSPEQ 240

Query: 231 CRE 233
           CRE
Sbjct: 241 CRE 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508730|ref|XP_003523107.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like [Glycine max]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/256 (57%), Positives = 175/256 (68%), Gaps = 21/256 (8%)

Query: 1   MGPRWKGRAS------------EAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAV 48
           M PRWKG+ +            E  S   S +Q+ L      +QS+    L+G S  L V
Sbjct: 1   MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSL------VQSDTRGFLSGSSVHLVV 54

Query: 49  EAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGE--DNSTKNDDE 106
           EAEQ  LL++ACFG  + T EKDK  +QL  EE FYLC+SLKCLKI  +  D S++ D+E
Sbjct: 55  EAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEE 114

Query: 107 LWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAE 166
           LW YMK+KKETFP  YKAYSHLR KNWVVRSG+QYG DFV YRHHP+ VHSEY VLVL++
Sbjct: 115 LWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSD 174

Query: 167 GEDGE-NGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISR 225
            ED + NGRLRVWSD+HCT RL GGVAK LL+L +N+NG    +P CL  Y VEERTI+R
Sbjct: 175 EEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITR 234

Query: 226 WSPEQCREDPATVANG 241
           W+PEQCRE     AN 
Sbjct: 235 WNPEQCREKMVVHANS 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746203|emb|CBI16259.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 142/244 (58%), Positives = 170/244 (69%), Gaps = 33/244 (13%)

Query: 1   MGPRWKGRASEAKSSGR--SHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNR 58
           MGPRWKG+ +EAK+     S + + L+ +    +S++  +L+G S LL   AEQTELLNR
Sbjct: 1   MGPRWKGKGAEAKALAEPMSEIVSQLQSSL--TRSDSQGLLSGCSVLLEAGAEQTELLNR 58

Query: 59  ACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118
           +CFGR ++TAEKDKQW+QL MEE FYLCHSL CLKIVGEDN  KND+ELWQYMK+++ETF
Sbjct: 59  SCFGRPVITAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHLKNDEELWQYMKSRRETF 118

Query: 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVW 178
           P  Y AYSHLR KNWVVRSGSQYG                             NGRLRVW
Sbjct: 119 PDFYMAYSHLRIKNWVVRSGSQYG---------------------------NANGRLRVW 151

Query: 179 SDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCRE--DPA 236
           SD  CT+RLCG VAKTLL++ INKNG G  TP CL++Y+VEERTI+RWS EQCRE   P 
Sbjct: 152 SDFDCTIRLCGSVAKTLLVIHINKNGHGATTPLCLKKYSVEERTITRWSAEQCREVQTPE 211

Query: 237 TVAN 240
           T +N
Sbjct: 212 TSSN 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248502|ref|NP_001240148.1| uncharacterized protein LOC100810335 [Glycine max] gi|255634724|gb|ACU17724.1| unknown [Glycine max]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/255 (56%), Positives = 172/255 (67%), Gaps = 21/255 (8%)

Query: 1   MGPRWKGRAS------------EAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAV 48
           M PRWKG+ +            E  S   S +Q+ L      +QS     L+G S  LAV
Sbjct: 1   MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQLQSSL------VQSNTCGFLSGSSVHLAV 54

Query: 49  EAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGE--DNSTKNDDE 106
            AEQ  LL++ACFG  + T EKDK  +QL  EE FYLC+SLKCLKI  +  D S +N +E
Sbjct: 55  GAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSPQNSEE 114

Query: 107 LWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAE 166
           LW YMK+KKETFP  YKAYSHLR KNWVVRSG+QYG DFV Y HHP+ VHSEY VLVL++
Sbjct: 115 LWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYCHHPARVHSEYGVLVLSD 174

Query: 167 GEDGE-NGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISR 225
           GED + NGRLRVWSD+HCT RL GGVAK LL+L +N+NG    +P CL  Y +EE TI+R
Sbjct: 175 GEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGSSNESPLCLANYTIEEHTITR 234

Query: 226 WSPEQCREDPATVAN 240
           W+PEQCRE     AN
Sbjct: 235 WNPEQCREKMVIHAN 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2144060	255	SEN2 "splicing endonuclease 2"	0.954	0.909	0.545	3.2e-65
TAIR|locus:2085687	237	SEN1 "splicing endonuclease 1"	0.942	0.966	0.563	4.1e-65
MGI|MGI:2141599	460	Tsen2 "tRNA splicing endonucle	0.662	0.35	0.333	1.9e-20
RGD|1309946	463	Tsen2 "tRNA splicing endonucle	0.658	0.345	0.325	1.1e-19
UNIPROTKB|Q5M954	463	Tsen2 "tRNA-splicing endonucle	0.658	0.345	0.325	1.1e-19
TAIR|locus:1009023257	118	AT3G45577 [Arabidopsis thalian	0.341	0.703	0.530	3.1e-19
UNIPROTKB|A6H7E5	459	TSEN2 "Uncharacterized protein	0.662	0.350	0.321	3.8e-18
ZFIN|ZDB-GENE-060929-918	438	tsen2 "tRNA splicing endonucle	0.654	0.363	0.319	5.4e-18
UNIPROTKB|F1NIA3	461	TSEN2 "tRNA-splicing endonucle	0.650	0.342	0.335	8.2e-18
UNIPROTKB|Q5ZIN2	461	TSEN2 "tRNA-splicing endonucle	0.650	0.342	0.335	8.2e-18

TAIR|locus:2144060 SEN2 "splicing endonuclease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 131/240 (54%), Positives = 169/240 (70%)

Query:     1 MGPRWKGRASEAKSSGRSHVQNHLRFTFLSI-QSEAHAVLAGYSALLAVEAEQTELLNRA 59
             M PRWK + +EAK+     +   +    LS+ ++E+   L+  + LLAVE EQ ELL+R 
Sbjct:     6 MAPRWKWKGAEAKALAEP-ISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRC 64

Query:    60 CFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFP 119
             CFGR +++AEK K+W QL  EE F+L ++LKC+KI  +    +N+ + W YMK+K+  FP
Sbjct:    65 CFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFP 124

Query:   120 LLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWS 179
             + +KAYSHLR KNWV+RSG QYGVDFVAYRHHPSLVHSEY+VLV    + G++ RLRVWS
Sbjct:   125 MFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV----QSGDSDRLRVWS 180

Query:   180 DIHCTVRLCGGVAKTLLILTINKN--GQGTATPSCLEQYAVEERTISRWSPEQCREDPAT 237
             DIHC VRL G VAKTLL L +N N  G+      CLE + VEE+TISRWSPE  RED +T
Sbjct:   181 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 240

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA;ISS

GO:0000214 "tRNA-intron endonuclease complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA;ISS

TAIR|locus:2085687 SEN1 "splicing endonuclease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 134/238 (56%), Positives = 168/238 (70%)

Query:     1 MGPRWKGRASEAKSSGR--SHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNR 58
             M PRWK + +EAK+     S   + LR +    Q+EA   L+  + LL+VE+E+ ELL+R
Sbjct:     1 MAPRWKWKGAEAKALAEPVSKTVSELRSSLT--QTEALGFLSSCNVLLSVESEEAELLDR 58

Query:    59 ACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118
              CFGR +V AEKDK+W QL  EE F+L + LKC+KI     S +N+ +LW+ M + K+ F
Sbjct:    59 CCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSFKQDF 118

Query:   119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVW 178
              +LYKAYSHLR KNW+VRSG QYGVDFV YRHHPSLVHSEYAVLV + G  G N RL+VW
Sbjct:   119 AILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIG--G-NDRLKVW 175

Query:   179 SDIHCTVRLCGGVAKTLLILTINK--NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
             SDIHC+VRL G VAK+LL+L +N+  N +    P CLE Y VEE+TI RWSPE  RED
Sbjct:   176 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA;ISS

GO:0000214 "tRNA-intron endonuclease complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA;ISS

MGI|MGI:2141599 Tsen2 "tRNA splicing endonuclease 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 56/168 (33%), Positives = 86/168 (51%)

Query:    73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
             ++ QL +EE F+L ++L CL I  E        +LWQ   A + TF   Y AY + R K 
Sbjct:   290 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 348

Query:   133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV--LAEGEDGENGRLRVWSDIHCTVRLCGG 190
             WV + G +YG D + YR  P   H+ Y+V++  L +  +G   R   W  +    R+ G 
Sbjct:   349 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELLDDNYEGSLRRPFSWKSLAALSRVSGN 408

Query:   191 VAKTLLILTINKNGQGTA----TPSCLEQYAVEERTISRWSPEQCRED 234
             V+K L++  + K    TA    TP C+++  V+E  +SRW   + R D
Sbjct:   409 VSKELMLCYLIKPSTMTAEDMETPECMKRIQVQEVILSRWVSSRERSD 456

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA

GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

RGD|1309946 Tsen2 "tRNA splicing endonuclease 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 55/169 (32%), Positives = 84/169 (49%)

Query:    73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
             ++ QL +EE F+L ++L CL I  E        +LWQ   A + TF   Y AY + R K 
Sbjct:   293 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 351

Query:   133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLR---VWSDIHCTVRLCG 189
             WV + G +YG D + YR  P   H+ Y+V++    +D   G LR    W  +    R+ G
Sbjct:   352 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELV-DDNFEGSLRRPFSWKSLAALSRVSG 410

Query:   190 GVAKTLLILTINK----NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
              V+K L++  + K      +   TP C+ +  V+E  +SRW   + R D
Sbjct:   411 NVSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWVSSRERSD 459

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA

GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|Q5M954 Tsen2 "tRNA-splicing endonuclease subunit Sen2" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 55/169 (32%), Positives = 84/169 (49%)

Query:    73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
             ++ QL +EE F+L ++L CL I  E        +LWQ   A + TF   Y AY + R K 
Sbjct:   293 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 351

Query:   133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLR---VWSDIHCTVRLCG 189
             WV + G +YG D + YR  P   H+ Y+V++    +D   G LR    W  +    R+ G
Sbjct:   352 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELV-DDNFEGSLRRPFSWKSLAALSRVSG 410

Query:   190 GVAKTLLILTINK----NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
              V+K L++  + K      +   TP C+ +  V+E  +SRW   + R D
Sbjct:   411 NVSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWVSSRERSD 459

GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

TAIR|locus:1009023257 AT3G45577 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 44/83 (53%), Positives = 57/83 (68%)

Query:    50 AEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQ 109
             +EQ ELL+R CFGR +  AEKDK+W QL  EE F+L + LKC+KI     S  N  +LW+
Sbjct:    36 SEQAELLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKISLHGRSLVNGVDLWR 95

Query:   110 YMKAKKETFPLLYKAYSHLRKKN 132
              +++ K  F +LYKAYSHLR KN
Sbjct:    96 SIRSFKPNFTILYKAYSHLRSKN 118

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

UNIPROTKB|A6H7E5 TSEN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 54/168 (32%), Positives = 81/168 (48%)

Query:    73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
             ++ QL +EE F+L ++L CL I  E        +LW      + TF   Y AY H R K 
Sbjct:   289 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIMKLWNAFSTVQPTFRTTYMAYHHFRSKG 347

Query:   133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV-LAEGE-DGENGRLRVWSDIHCTVRLCGG 190
             WV + G +YG D + YR  P   H+ Y+V+V L +    G   R   W  +    R+   
Sbjct:   348 WVPKPGLKYGTDLLLYRKGPPFYHASYSVIVELVDDRFQGAPRRPLSWRSLAALSRVSVS 407

Query:   191 VAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRWSPEQCRED 234
             V+K L++  + K    T     +P C++Q  V+E  +SRW   + R D
Sbjct:   408 VSKELMLCYLIKPSTMTDKDMESPECMKQIKVQEVILSRWVSSRERSD 455

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA

ZFIN|ZDB-GENE-060929-918 tsen2 "tRNA splicing endonuclease 2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 55/172 (31%), Positives = 86/172 (50%)

Query:    73 QWYQLGMEEGFYLCHSLKCLKIV--GEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRK 130
             ++ QL  EE F+L ++L CL I   GE  S     +LW   ++ +  F   Y AY + R 
Sbjct:   268 EYLQLSYEEAFFLVYALGCLSIYYNGEALSVA---QLWTMFRSLQPNFCFSYAAYHYYRS 324

Query:   131 KNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRV--WSDIHCTVRLC 188
             K WV +SG +YG D + YR  P   H+ Y+V+V           LR   W  +    R  
Sbjct:   325 KGWVPKSGVKYGTDLMLYRKGPPFYHASYSVVVDTVDASFRRSSLRPFSWRSLATLSRTT 384

Query:   189 GGVAKTLLILTI----NKNGQGTATPSCLEQYAVEERTISRW--SPEQCRED 234
             G V+K L++  I    +  G    +P CL++++V+E  +SRW  S E+  ++
Sbjct:   385 GNVSKELMLCFIITPSDVTGDLLVSPQCLKRFSVQEVLMSRWVSSKERTEQE 436

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA

GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

UNIPROTKB|F1NIA3 TSEN2 "tRNA-splicing endonuclease subunit Sen2" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 58/173 (33%), Positives = 88/173 (50%)

Query:    73 QWYQLGMEEGFYLCHSLKCLKIV-GEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKK 131
             ++ QL +EE F+L ++L CL +  GE+  T    +LW+     K +F   Y AY + R K
Sbjct:   291 EYLQLSLEEAFFLVYALGCLTVYYGEEPLTIL--KLWEIFSEVKPSFKTTYMAYHYFRSK 348

Query:   132 NWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAE-GEDGENGRLR---VWSDIHCTVRL 187
              WV + G +YG D + YR  P   H+ Y+V+  AE  +D   G LR    W  +    R 
Sbjct:   349 GWVPKVGLKYGTDLLLYRKGPPFYHASYSVI--AELVDDNFEGSLRRPLSWMSLSGLNRT 406

Query:   188 CGGVAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRW--SPEQCRED 234
                 +K LL+  + K    T    ATP CL++  V+E  ++RW  S E+  +D
Sbjct:   407 TVNASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRWVSSRERSEQD 459

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA

GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|Q5ZIN2 TSEN2 "tRNA-splicing endonuclease subunit Sen2" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 58/173 (33%), Positives = 88/173 (50%)

Query:    73 QWYQLGMEEGFYLCHSLKCLKIV-GEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKK 131
             ++ QL +EE F+L ++L CL +  GE+  T    +LW+     K +F   Y AY + R K
Sbjct:   291 EYLQLSLEEAFFLVYALGCLTVYYGEEPLTIL--KLWEIFSEVKPSFKTTYMAYHYFRSK 348

Query:   132 NWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAE-GEDGENGRLR---VWSDIHCTVRL 187
              WV + G +YG D + YR  P   H+ Y+V+  AE  +D   G LR    W  +    R 
Sbjct:   349 GWVPKVGLKYGTDLLLYRKGPPFYHASYSVI--AELVDDNFEGSLRRPLSWMSLSGLNRT 406

Query:   188 CGGVAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRW--SPEQCRED 234
                 +K LL+  + K    T    ATP CL++  V+E  ++RW  S E+  +D
Sbjct:   407 TVNASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRWVSSRERSEQD 459

GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSS3	SEN22_ARATH	3, ., 1, ., 2, 7, ., 9	0.5397	0.9588	0.932	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.27.9	0.946
3rd Layer	3.1.27	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024474001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (242 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015936001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (215 aa)							•		0.470
	GSVIVG00017910001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)			•				•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
pfam01974	85	pfam01974, tRNA_int_endo, tRNA intron endonuclease	2e-24
PRK09297	169	PRK09297, PRK09297, tRNA-splicing endonuclease sub	6e-17
COG1676	181	COG1676, SEN2, tRNA splicing endonuclease [Transla	1e-14
TIGR00324	170	TIGR00324, endA, tRNA-intron endonuclease	1e-11
PRK09300	330	PRK09300, PRK09300, tRNA splicing endonuclease; Re	3e-09
pfam02778	67	pfam02778, tRNA_int_endo_N, tRNA intron endonuclea	2e-05

>gnl|CDD|216820 pfam01974, tRNA_int_endo, tRNA intron endonuclease, catalytic C-terminal domain

 Score = 92.3 bits (230), Expect = 2e-24
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 118 FPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRV 177
           F L Y  Y  LR++ +VVRSG ++G DF  Y   P   HSEY V VL+E E+        
Sbjct: 1   FILKYVVYRDLRERGYVVRSGLKFGADFRVYERGPGKGHSEYLVRVLSEDEE------IS 54

Query: 178 WSDIHCTVRLCGGVAKTLLILTINKNG 204
           W D+   VRL   V K L++  ++  G
Sbjct: 55  WLDLLRAVRLAHSVKKKLVLAIVDDEG 81

Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. Length = 85

>gnl|CDD|236459 PRK09297, PRK09297, tRNA-splicing endonuclease subunit alpha; Reviewed

 Score = 75.3 bits (186), Expect = 6e-17
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 76  QLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVV 135
           +L + E  YL      L++V +D    + +EL++  +   E F + Y  Y  LR + ++V
Sbjct: 36  ELSLIEALYL-VEKGWLEVVDKDGELLSFEELYELAREIIEKFDIKYLVYKDLRDRGYIV 94

Query: 136 RSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTL 195
           +SG +YG DF  Y   P + HS Y V VL+     E+  +   ++I   VR+   V K L
Sbjct: 95  KSGLKYGSDFRVYERGPGIDHSPYLVKVLS-----EDEEISP-NEITSFVRVSHSVRKKL 148

Query: 196 LILTINKNG 204
           ++  ++ +G
Sbjct: 149 VLAIVDDDG 157

Length = 169

>gnl|CDD|224590 COG1676, SEN2, tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 63  RHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLY 122
             I T E+D    QL + E  YL      LK+   D    + +EL      K+E+F   Y
Sbjct: 36  EKIGTTERDPL--QLSLIEALYLAERGF-LKVESRDGKILSFEELMDLGAEKEESFDERY 92

Query: 123 KAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWS--D 180
             Y  LR + +VV++G ++G DF  YR  P   HSEY VLVL E E          S  D
Sbjct: 93  LVYRDLRDRGYVVKTGLKFGSDFRVYRGGPDREHSEYLVLVLDENE--------EISLGD 144

Query: 181 IHCTVRLCGGVAKTLLILTINKN 203
           I   VRL   V K L++  +++ 
Sbjct: 145 IVRKVRLAHSVRKELVLAIVDRE 167

Length = 181

>gnl|CDD|129424 TIGR00324, endA, tRNA-intron endonuclease

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 92  LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
           L+++  D+   + +EL    +  +  F   Y  Y  LR + +VV++G ++G DF  Y   
Sbjct: 52  LRLIRSDSEPLSREELSDLARKVERGFMRKYLVYKDLRDRGYVVKTGFKFGADFRLYERG 111

Query: 152 PS--LVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLI 197
           P     HSEY V +    E  +        D+   VR+  GV K L+I
Sbjct: 112 PLRDHSHSEYLVAIDDHDESID------LIDLSSGVRVAHGVKKKLVI 153

The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini. The genes are homologous in Eucarya and Archea. The two yeast genes have been functionally studied (see MEDLINE; 97344075) and are two subunits of a heterotetramer enzyme in yeast the other two subunits of which have no known homologs [Transcription, RNA processing]. Length = 170

>gnl|CDD|236460 PRK09300, PRK09300, tRNA splicing endonuclease; Reviewed

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 22/175 (12%)

Query: 33  SEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCL 92
            +    L G   +  V     EL  R  +G+       D +  QL + E  YL   L+  
Sbjct: 164 DKVSGTLLGDRVV--VWDPPGELYERGFYGK-----PLDGRRLQLSLVEAAYL---LERG 213

Query: 93  KIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHP 152
            +  E       DE  +  +  +  F      Y  LR++ +V ++G ++G DF  Y    
Sbjct: 214 VLSVEILDA---DEFVERAREVEGEFDRKLAVYRDLRERGFVPKTGFKFGSDFRVYEGVE 270

Query: 153 S---LVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNG 204
           S   L HSEY V V+       +       D+   VRL   V K ++   I+  G
Sbjct: 271 SVEKLPHSEYLVRVI------PDDHEFSPRDLSRAVRLAHSVRKKMVFALIDDGG 319

Length = 330

>gnl|CDD|217225 pfam02778, tRNA_int_endo_N, tRNA intron endonuclease, N-terminal domain

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 37  AVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVG 96
             L+G   L+  +     L  R  +GR       D +  QL + E  YL      L++  
Sbjct: 3   GELSGDRVLVGDKEAARRLYERGFYGR-----PLDGEPLQLSLVEALYLL-ERGKLEVK- 55

Query: 97  EDNSTKNDDELW 108
           +D    + +EL 
Sbjct: 56  DDGKPLSFEELL 67

Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG4685	271	consensus tRNA splicing endonuclease SEN2 [Transla	100.0
PRK09297	169	tRNA-splicing endonuclease subunit alpha; Reviewed	100.0
TIGR00324	170	endA tRNA intron endonuclease. The enzyme catalyse	100.0
PRK09300	330	tRNA splicing endonuclease; Reviewed	100.0
COG1676	181	SEN2 tRNA splicing endonuclease [Translation, ribo	100.0
PRK09300	330	tRNA splicing endonuclease; Reviewed	99.97
PF01974	85	tRNA_int_endo: tRNA intron endonuclease, catalytic	99.94
KOG4133	290	consensus tRNA splicing endonuclease [Translation,	99.83
PRK09539	124	tRNA-splicing endonuclease subunit beta; Reviewed	99.82
PF02778	67	tRNA_int_endo_N: tRNA intron endonuclease, N-termi	99.64
KOG4772	364	consensus Predicted tRNA-splicing endonuclease sub	97.58
PF12928	72	tRNA_int_end_N2: tRNA-splicing endonuclease subuni	94.88

>KOG4685 consensus tRNA splicing endonuclease SEN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-50  Score=351.61  Aligned_cols=229  Identities=45%  Similarity=0.763  Sum_probs=213.1

Q ss_pred             CCCCCCCccchhhhc--chhhhHHHHHhhhcccCcceEEEEeCCeEEEeechhhHHHHHhcccccccccC--cccCceee
Q 043831            1 MGPRWKGRASEAKSS--GRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTA--EKDKQWYQ   76 (243)
Q Consensus         1 ~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~--~~~~~~L~   76 (243)
                      |+|+||++.+.+++.  |.|+++.||+.++  .+.+-++.++.+.+++....+++++.++.++|+....+  +...++||
T Consensus        37 ~a~~~~~~g~l~k~~~e~~s~~I~el~~~~--~~~k~e~kls~~v~~~~~eqe~ae~n~r~~~~rl~~~~~~~~i~~~Lq  114 (271)
T KOG4685|consen   37 RAPRWKWLGALRKALAEPASKIISELSGSL--QWTKDEGKLSECVVLLAVEQECAELNDRCCFNRLVEWAEAEKIKEWLQ  114 (271)
T ss_pred             hhhhHHHhHHHHHhhCCchhHHHHHhcccc--ccchhhcceeccceeEEechhhccchhhhhhhhhhhcccccchhhHhh
Confidence            579999999988885  9999999999999  99999999999999998999999888899999999884  45668999


Q ss_pred             ecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCc
Q 043831           77 LGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVH  156 (243)
Q Consensus        77 Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~H  156 (243)
                      |||+|||||.|+++||+|+.. ..+++..++|..|....++|..-|.+|+|||++||+|++|+|||+||++|++||.++|
T Consensus       115 Ls~eEAffL~y~lkci~I~~~-k~l~~~v~~w~am~~~~~~F~~~y~~y~hlrskGWvvrsGlkyG~DfllYr~gP~f~H  193 (271)
T KOG4685|consen  115 LSPEEAFFLSYALKCIKISLN-KCLLNEVDLWTAMRSLQPNFGKLYKAYHHLRSKGWVVRSGLKYGVDFLLYRHGPSFVH  193 (271)
T ss_pred             cCHHHHHHHHhhhceeEEehh-hccccHHHHHHHHhhcchhhHHHHHHHHHHHHcCcEecccccccceEEEEecCCccce
Confidence            999999999999999999864 7789999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEEEEEec--CCCCCCccccccceEEEEEEEeeecCCCCCCC
Q 043831          157 SEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINK--NGQGTATPSCLEQYAVEERTISRWSPEQCRED  234 (243)
Q Consensus       157 S~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~llla~v~~--~~~~~~~p~~l~~~~V~E~~~~Rw~p~~~r~~  234 (243)
                      |+|.|.+.+.+.+    +..+|.++.+..|++.+|+|++++||++.  .+.++++|.|+..|+|.|++++||+|.++|+|
T Consensus       194 Sey~VLi~~g~~d----r~~t~~~i~~~~Rl~~sv~Kslv~cyvd~~a~d~~mn~~~~~e~~~v~eq~~~Rwsp~~er~d  269 (271)
T KOG4685|consen  194 SEYGVLIQDGRRD----RLLTWSDIHCKVRLSGSVAKSLVLCYVDGNALDVKMNSPKCMELFTVGEQTLSRWSPGRERED  269 (271)
T ss_pred             eeeeEEEecCccc----chhhHHHHhHHHHhhhhccceEEEEEEeccccccccchHHHHHHhhhhHHHHhhhCCcccccC
Confidence            9999999884332    45789999999999999999999999999  56789999999999999999999999999999


Q ss_pred             cc
Q 043831          235 PA  236 (243)
Q Consensus       235 ~~  236 (243)
                      ++
T Consensus       270 ~d  271 (271)
T KOG4685|consen  270 QD  271 (271)
T ss_pred             CC
Confidence            74

>PRK09297 tRNA-splicing endonuclease subunit alpha; Reviewed

Probab=100.00  E-value=1.6e-44  Score=305.84  Aligned_cols=157  Identities=29%  Similarity=0.502  Sum_probs=145.4

Q ss_pred             eEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhc
Q 043831           35 AHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAK  114 (243)
Q Consensus        35 ~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~  114 (243)
                      |+|.|.|++|+|....+..+||++++||++.++      +|+|||+||+||+ .+|+|+|.+.+++++|++|+|+.+...
T Consensus         1 ~~g~l~~~~V~v~~~~~~~~Ly~~~~yG~~~~~------~L~Ls~~Ea~yL~-~~g~L~v~~~~~~~~s~~el~~~~~~~   73 (169)
T PRK09297          1 IKGVLSGDRVVIKDVEGIRRLYNKGFYGKLLGN------PLELSLIEALYLV-EKGWLEVVDKDGELLSFEELYELAREI   73 (169)
T ss_pred             CceEEeCCEEEEechHHHHHHHhCCCcCCccCC------cEEEcHHHHHHHH-HCCCEEEEcCCCcccCHHHHHHHHHhc
Confidence            689999999999333445569999999999998      8999999999999 799999998777889999999999999


Q ss_pred             CCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCc
Q 043831          115 KETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKT  194 (243)
Q Consensus       115 ~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~  194 (243)
                      +++|..+|.||+|||+|||+|+||+|||+||+||+++|...||+|+|+++++++.++      |.+|++.+|+|++|+|+
T Consensus        74 ~~~F~~~y~VY~dLr~rG~~vk~G~kfG~df~vY~~gp~~~Hs~~lV~v~~e~~~~~------~~~l~~~~Rla~~v~K~  147 (169)
T PRK09297         74 IEKFDIKYLVYKDLRDRGYIVKSGLKYGSDFRVYERGPGIDHSPYLVKVLSEDEEIS------PNEITSFVRVSHSVRKK  147 (169)
T ss_pred             cccHHHHhHHHHHHHHCCCccCCCCcCCeeEEEECCCCCCCcccEEEEEecCCCcCC------HHHHHHhhhheeecccE
Confidence            999999999999999999999999999999999999999999999999999887765      99999999999999999


Q ss_pred             EEEEEEecCC
Q 043831          195 LLILTINKNG  204 (243)
Q Consensus       195 llla~v~~~~  204 (243)
                      +|+|+|+.++
T Consensus       148 ~ila~vd~~~  157 (169)
T PRK09297        148 LVLAIVDDDG  157 (169)
T ss_pred             EEEEEEeCCC
Confidence            9999998544

>TIGR00324 endA tRNA intron endonuclease

Probab=100.00  E-value=3.2e-43  Score=298.19  Aligned_cols=157  Identities=27%  Similarity=0.445  Sum_probs=145.2

Q ss_pred             ceEEEEeCCeEEEeechh-hHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHH
Q 043831           34 EAHAVLAGYSALLAVEAE-QTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMK  112 (243)
Q Consensus        34 ~~~g~L~g~~V~v~~~~~-~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~  112 (243)
                      +.+|.|.||+|+| .+.+ ..+||++++||++.++      .|+|||+||+||+ ..|+|+|.+.++.++|++++|+.+.
T Consensus         1 ~~~~~l~~d~v~v-~~~~~~~~l~~~~~yG~~~~~------~l~LsliEa~yL~-~~g~l~v~~~~~~~ls~~el~~~~~   72 (170)
T TIGR00324         1 EIQGKLKGDEVIV-KKKTIISDLTTREEYGNLDGD------SLNLSLIESLYLI-DLGKLRLIRSDSEPLSREELSDLAR   72 (170)
T ss_pred             CeeEEEeCCEEEE-CCcchhhHHHhcccCCCCcCC------ccEEeHHHHHHHH-hCCcEEEEcCCCCcCCHHHHHHHHH
Confidence            3579999999999 6655 4569999999999988      7999999999999 7999999877888999999999999


Q ss_pred             hcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCC--CCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhccc
Q 043831          113 AKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHP--SLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGG  190 (243)
Q Consensus       113 ~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P--~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~s  190 (243)
                      ..+++|..+|.||+|||+|||+|+||+|||+||+||+++|  .+.||+|+|+|+++++.++      |.+|++.+|+|++
T Consensus        73 ~~~~~f~~~y~VY~dLR~rG~~vk~G~kFG~dF~vY~~~p~~~~~Hs~~~V~v~~~~~~~~------~~~l~~~~Rla~~  146 (170)
T TIGR00324        73 KVERGFMRKYLVYKDLRDRGYVVKTGFKFGADFRLYERGPLRDHSHSEYLVAIDDHDESID------LIDLSSGVRVAHG  146 (170)
T ss_pred             hccccHHHhhHHHHHHHHCCCEecCCcccCceEEEECCCCCCCccCceEEEEEecCCCccC------HHHHHhhhhheec
Confidence            9999999999999999999999999999999999999999  8889999999999887765      9999999999999


Q ss_pred             ccCcEEEEEEecCC
Q 043831          191 VAKTLLILTINKNG  204 (243)
Q Consensus       191 VkK~llla~v~~~~  204 (243)
                      |||++|+|+|+.++
T Consensus       147 VkK~lvla~v~~~~  160 (170)
T TIGR00324       147 VKKKLVIAYVDEEK  160 (170)
T ss_pred             cccEEEEEEEecCC
Confidence            99999999998653

The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini. The genes are homologous in Eucarya and Archea. The two yeast genes have been functionally studied (PubMed:97344075) and are two subunits of a heterotetramer enzyme in yeast the other two subunits of which have no known homologs.

>PRK09300 tRNA splicing endonuclease; Reviewed

Probab=100.00  E-value=6.1e-40  Score=302.94  Aligned_cols=151  Identities=25%  Similarity=0.414  Sum_probs=140.5

Q ss_pred             CcceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHH
Q 043831           32 QSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYM  111 (243)
Q Consensus        32 ~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~  111 (243)
                      ..+|+|+|.|++|+| +++ ..+||+++|||++.++     ++|||||+||+||+ .+|+|+|     ..++++++++.+
T Consensus       163 ~~~~~g~l~g~~V~v-~~~-~~~l~~~~~YG~~~~~-----~~L~LslvEA~yL~-~~g~L~v-----~~~~~~el~~~~  229 (330)
T PRK09300        163 PDKVSGTLLGDRVVV-WDP-PGELYERGFYGKPLDG-----RRLQLSLVEAAYLL-ERGVLSV-----EILDADEFVERA  229 (330)
T ss_pred             CCCceEEEeCCEEEE-cCc-hHHHHhcCCCCCCCCC-----CceeECHHHHHHHH-hCCCEEE-----eeCCHHHHHHHH
Confidence            467999999999999 666 5569999999999877     58999999999999 7999999     359999999999


Q ss_pred             HhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCC---CCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhc
Q 043831          112 KAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHP---SLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLC  188 (243)
Q Consensus       112 ~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P---~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla  188 (243)
                      +..+++|..+|.||+|||+|||+|+||+||||||+||+++|   ..+||+|+|+|+++++.++      +.+|++.+|||
T Consensus       230 ~~~~~~F~~~y~VY~dLR~rG~~vk~G~KFG~DF~vY~~~~~~~~~~Hs~~lV~v~~~~~~~~------~~~l~~~~Rla  303 (330)
T PRK09300        230 REVEGEFDRKLAVYRDLRERGFVPKTGFKFGSDFRVYEGVESVEKLPHSEYLVRVIPDDHEFS------PRDLSRAVRLA  303 (330)
T ss_pred             hhcccchHhhhHHHHHHHHCCCEecCCcccCceEEEECCCCCCCCCCcceEEEEEccCCCccC------HHHHHhhheee
Confidence            99999999999999999999999999999999999999986   7999999999999887765      99999999999


Q ss_pred             ccccCcEEEEEEe
Q 043831          189 GGVAKTLLILTIN  201 (243)
Q Consensus       189 ~sVkK~llla~v~  201 (243)
                      ++|||++|+|+|+
T Consensus       304 ~sVrK~~vla~v~  316 (330)
T PRK09300        304 HSVRKKMVFALID  316 (330)
T ss_pred             eccceEEEEEEEE
Confidence            9999999999998

>COG1676 SEN2 tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.8e-34  Score=244.11  Aligned_cols=157  Identities=31%  Similarity=0.460  Sum_probs=142.8

Q ss_pred             cceEEEEeCCeEEEeechh-hHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHH
Q 043831           33 SEAHAVLAGYSALLAVEAE-QTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYM  111 (243)
Q Consensus        33 ~~~~g~L~g~~V~v~~~~~-~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~  111 (243)
                      ....+.+.++.|.+ .+.+ +..+|++..+|+..+.      +|+||++||+||. ++|.|++.+.++.+++++|+....
T Consensus        10 ~~~~~~~~~~~v~~-~~~~g~~~~~~~~~~~~~~~~------~l~ls~~ea~yl~-e~g~l~~~~~~~~~~s~eel~~~~   81 (181)
T COG1676          10 VPVEGVLEDDRVYV-KDKEGQNLIYSKEKIGTTERD------PLQLSLIEALYLA-ERGFLKVESRDGKILSFEELMDLG   81 (181)
T ss_pred             ceEEEEecCcEEEE-EccCCcceeeehhhccccccc------cceecHHHHHHHh-hcceEeeccCCCccccHHHHHHHH
Confidence            34567788888888 5544 4558888888888886      7999999999999 899999998899999999999999


Q ss_pred             HhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccc
Q 043831          112 KAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGV  191 (243)
Q Consensus       112 ~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sV  191 (243)
                      ....+.|..+|.||+|||++||+|+||+||||||++|+++|...||.|+|.++++++.++      ..+|++.+||||+|
T Consensus        82 ~~~~~~f~~~y~VY~dLr~rG~vvktG~KfG~~FrvY~~~~~~~Hs~ylV~v~~~~~~~~------~~~i~~~~Rla~sV  155 (181)
T COG1676          82 AEKEESFDERYLVYRDLRDRGYVVKTGLKFGSDFRVYRGGPDREHSEYLVLVLDENEEIS------LGDIVRKVRLAHSV  155 (181)
T ss_pred             hhcccccceeeeehhhHHhCceEECccceeeeEEEEecCCCCcccceEEEEEEcCCCccc------HHHHhhhhhhhccc
Confidence            888889999999999999999999999999999999999999999999999999988765      89999999999999


Q ss_pred             cCcEEEEEEecC
Q 043831          192 AKTLLILTINKN  203 (243)
Q Consensus       192 kK~llla~v~~~  203 (243)
                      +|+|++|+|+.+
T Consensus       156 rK~~v~a~Vd~~  167 (181)
T COG1676         156 RKELVLAIVDRE  167 (181)
T ss_pred             eeEEEEEEEecC
Confidence            999999999973

>PRK09300 tRNA splicing endonuclease; Reviewed

Probab=99.97  E-value=5.4e-31  Score=243.51  Aligned_cols=163  Identities=23%  Similarity=0.347  Sum_probs=140.5

Q ss_pred             eEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhc
Q 043831           35 AHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAK  114 (243)
Q Consensus        35 ~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~  114 (243)
                      |+|.|.||+|+| .+.+..++|++++||++.++      .|+|||+||+||+ .+|.|+|.+    .++++||++.+...
T Consensus         1 m~g~L~g~~V~v-~~~~~~~ly~~~~YG~~~g~------~L~LslvEalYL~-~~g~l~v~~----~~~~eel~~~~~~~   68 (330)
T PRK09300          1 MKGELEGGVVFV-GKDARSRLYDSRGYGRPKGD------GLELAPVEAAYLL-FRGKIEIVD----GLGFRDLFARASLR   68 (330)
T ss_pred             CceEEECCEEEE-CchhhhhHHhcCCCCcCCCC------eeEEcHHHHHHHH-HcCCEEEec----CCCHHHHHHHhhhc
Confidence            689999999999 66555569999999999887      7999999999999 789999972    39999999999887


Q ss_pred             CCccchhhhhchhhhhcCeEeccCCcCCccEEEeeC--CCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhccccc
Q 043831          115 KETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRH--HPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVA  192 (243)
Q Consensus       115 ~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~--~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVk  192 (243)
                       ++|..+|.||+|||+|||+|+||   |+||+||++  +|+..||+|+|+++.+++.++      +.+|++        |
T Consensus        69 -~~f~~~y~VY~dLR~rGy~vk~g---g~dF~vY~rG~~p~~~hs~~lV~v~~e~~~i~------~~~l~~--------r  130 (330)
T PRK09300         69 -PNFELRYLVYKDLRERGYYVQPG---DADFRVYPRGSGPGDGESKYRVRVVSERDPLP------FSDLIE--------R  130 (330)
T ss_pred             -ccchheehHHHHHHHCCceeccC---CccEEEEcCCCCCCcCcccEEEEEcCCCCccC------HHHHhc--------c
Confidence             99999999999999999999999   999999996  599999999999999988765      888877        9


Q ss_pred             CcEEEEEEecCCCCCCccccccceEEEEEEEeeecCCCCCCC-ccccc
Q 043831          193 KTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCRED-PATVA  239 (243)
Q Consensus       193 K~llla~v~~~~~~~~~p~~l~~~~V~E~~~~Rw~p~~~r~~-~~~~~  239 (243)
                      |++|+|+|+.++            .|+=..+++|.|+.+.+. .+.+.
T Consensus       131 K~~vla~Vd~e~------------~vtyy~v~~~~~~g~~~~~~~~~~  166 (330)
T PRK09300        131 KQLVLAVVDEES------------EITYYEVKRIDPKGRMEEDPPDKV  166 (330)
T ss_pred             CceEEEEEcCCC------------CEEEEEEEEecCCCCCCCCCCCCc
Confidence            999999999554            233345678888888777 33433

>PF01974 tRNA_int_endo: tRNA intron endonuclease, catalytic C-terminal domain; InterPro: IPR006677 This entry represents a 3-layer alpha/beta/alpha domain found as the catalytic domain at the C-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 2 and 4 (C-terminal) in the homodimeric enzymes []

Probab=99.94  E-value=2.7e-27  Score=179.05  Aligned_cols=81  Identities=38%  Similarity=0.696  Sum_probs=75.7

Q ss_pred             cchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEE
Q 043831          118 FPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLI  197 (243)
Q Consensus       118 F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~lll  197 (243)
                      |..+|.||+|||++||+|+||+|||+||+||+++|...||+|+|+|+++++.++      |.+|++.+|+|++|+|++|+
T Consensus         1 F~~~y~vY~dLr~rG~~v~~G~kfG~df~vY~~~p~~~Hs~~~V~v~~~~~~~~------~~~l~~~~Rla~~v~K~~il   74 (85)
T PF01974_consen    1 FWRKYAVYRDLRSRGYVVKPGIKFGCDFLVYPGDPGRYHSSYLVHVLSEDDPIS------WSDLIALVRLATSVKKELIL   74 (85)
T ss_dssp             HHHHHHHHHHHHHTT-EEEEEGGGTSSEEEETSCTTSSSSSEEEEEEETTSEEE------HHHHHHHHHHHHHTTSEEEE
T ss_pred             CchhhHHHHHHHHCCCEECccCcCCceEEEEeCCCCCcCceEEEEEEcCCCccC------HHHHHHHHHHHhhcCcEEEE
Confidence            678999999999999999999999999999999999999999999999887765      99999999999999999999


Q ss_pred             EEEecCC
Q 043831          198 LTINKNG  204 (243)
Q Consensus       198 a~v~~~~  204 (243)
                      |+|+.++
T Consensus        75 a~v~~~~   81 (85)
T PF01974_consen   75 AYVDKEG   81 (85)
T ss_dssp             EEETTTS
T ss_pred             EEEcCCC
Confidence            9997655

tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 3IEY_B 3IF0_X 2CV8_A 3P1Z_B 3AJV_B 2GJW_D 1R0V_A 3P1Y_C 1R11_B 1RLV_A ....

>KOG4133 consensus tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=2.5e-20  Score=165.01  Aligned_cols=75  Identities=25%  Similarity=0.407  Sum_probs=71.1

Q ss_pred             chhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEEE
Q 043831          119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLIL  198 (243)
Q Consensus       119 ~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~llla  198 (243)
                      ..+|.+|+|||++||++.||-+|||||+|||+||..+||+|+|.+..+++.++      ..++++.+||.++|+|.++++
T Consensus       194 ~lrY~iyKdLwdrGfyLs~ggrFGgdFlvYPGDPLrfHahyivq~~~~~~~I~------~l~lI~~gRLgt~VkKs~vig  267 (290)
T KOG4133|consen  194 ELRYSIYKDLWDRGFYLSPGGRFGGDFLVYPGDPLRFHAHYIVQCWAPEDTIP------LLELIAGGRLGTSVKKSWVIG  267 (290)
T ss_pred             hhHHHHHHHHHHcCceeCcccccCceeEecCCcchheeeheeeeeccCCCCcC------HHHHHHhhhhhhhhhhhheee
Confidence            56999999999999999999999999999999999999999999887777766      899999999999999999998


Q ss_pred             E
Q 043831          199 T  199 (243)
Q Consensus       199 ~  199 (243)
                      +
T Consensus       268 g  268 (290)
T KOG4133|consen  268 G  268 (290)
T ss_pred             c
Confidence            8

>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed

Probab=99.82  E-value=2e-20  Score=150.72  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=79.4

Q ss_pred             CCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCc
Q 043831          115 KETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKT  194 (243)
Q Consensus       115 ~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~  194 (243)
                      .+.|..+|+||+|||+|||+|+||+|||++|.+|++    .||.|+|+|+++++.++      +.+|...+|+||+|+|+
T Consensus        31 ~~~~~~kylVYkDLR~RGyvVk~G~kfg~~~~~~~~----~~s~ylV~Vl~E~~~is------~~eL~~~vr~a~svrK~  100 (124)
T PRK09539         31 YLVNWDKVDVFVDLKQRGRKTIDGIDEISLIIKDKE----NKYTAMVLIVDENEKVS------FKKILDKLHFSKSMNLE  100 (124)
T ss_pred             hhcccceEEEehhHHhCCCeeccCCceeEEEEecCC----CCceEEEEEecCCCccC------HHHHHHHHHHHhhccce
Confidence            578889999999999999999999999999999943    69999999999998765      99999999999999999


Q ss_pred             EEEEEEecCCCCCCccccccceEEEEEE
Q 043831          195 LLILTINKNGQGTATPSCLEQYAVEERT  222 (243)
Q Consensus       195 llla~v~~~~~~~~~p~~l~~~~V~E~~  222 (243)
                      +|||+||.++       .+--|.++++.
T Consensus       101 lVLAVVD~eg-------dVTYY~v~~i~  121 (124)
T PRK09539        101 LYLAIVDKYG-------DVTYYTLSEIK  121 (124)
T ss_pred             eEEEEEcCCC-------cEEEEEEEEee
Confidence            9999999666       24555555443

>PF02778 tRNA_int_endo_N: tRNA intron endonuclease, N-terminal domain; InterPro: IPR006678 This entry represents a 2-layer alpha/beta domain found at the N-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 1 (N-terminal) and 3 in the homodimeric enzymes []

Probab=99.64  E-value=4.3e-16  Score=113.52  Aligned_cols=66  Identities=24%  Similarity=0.434  Sum_probs=54.6

Q ss_pred             eEEEEeCCeEEEeech-hhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHH
Q 043831           35 AHAVLAGYSALLAVEA-EQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELW  108 (243)
Q Consensus        35 ~~g~L~g~~V~v~~~~-~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~  108 (243)
                      |+|.|.|++|+| .+. +..+||+++|||++..+     ++|+|||+||+||++ .|+|+|. .+|+.+|++|+|
T Consensus         1 m~g~L~g~~V~v-~d~~~~~~ly~~~~YG~~~~~-----~~L~LslvEa~YL~~-~g~l~v~-~~g~~ls~~el~   67 (67)
T PF02778_consen    1 MKGELSGDRVVV-WDKEAARELYENGFYGKPLDD-----ERLQLSLVEALYLLE-KGKLEVY-EDGKKLSFEELW   67 (67)
T ss_dssp             -EEEEETTEEEE-SSHHHHHHHHHTTT-SEECET-----SCEEEEHHHHHHHHH-TTSEEEE-TTSCEE-HHHHH
T ss_pred             CcEEEeCCEEEE-CcccHHHHHHhcCCCCCCCCC-----CcEEEeHHHHHHHHh-CCcEEEe-eCCcCCCHHHhC
Confidence            789999999999 554 45569999999996544     489999999999995 6999998 689999999987

tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1A79_D 2CV8_A 3P1Z_B 3AJV_B 3IEY_A 2ZYZ_D 2GJW_D 1R0V_A 3P1Y_C 1R11_B ....

>KOG4772 consensus Predicted tRNA-splicing endonuclease subunit [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=5.5e-05  Score=69.94  Aligned_cols=67  Identities=27%  Similarity=0.392  Sum_probs=51.7

Q ss_pred             cCceeeecHHHHHHhhhcCCceEEEc-CCCCCCCHHHHHHHHHhcCCccchhhhhchhhhhcCeEe-ccCC
Q 043831           71 DKQWYQLGMEEGFYLCHSLKCLKIVG-EDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVV-RSGS  139 (243)
Q Consensus        71 ~~~~L~Lsl~EA~yL~~~~g~L~V~~-~~~~~ls~~el~~~~~~~~~~F~~~y~VY~dLR~rG~vv-ksG~  139 (243)
                      +...+-|-++||+||+ +.|.+.... .++-+++.++|+..+...... +.+|.||+||+..||+| +++.
T Consensus       106 dsgklyl~~eEalYL~-ErG~l~~cg~e~~I~~sl~dLys~~~s~~~s-~enYlVyahLkrlGfiv~rhn~  174 (364)
T KOG4772|consen  106 DSGKLYLFIEEALYLS-ERGELQSCGHEDDIVISLKDLYSEIASEKYS-MENYLVYAHLKRLGFIVKRHNV  174 (364)
T ss_pred             ccCceEEeHHHHHHHH-HhhhhhhhcCccchhhHHHHHHHHHhhhhcc-hhHHHHHHHHHhcceeeeccCC
Confidence            3345999999999999 677554432 356679999999887764433 77999999999999998 5554

>PF12928 tRNA_int_end_N2: tRNA-splicing endonuclease subunit sen54 N-term; InterPro: IPR024336 tRNA-splicing endonucleases (3

Probab=94.88  E-value=0.029  Score=41.24  Aligned_cols=22  Identities=27%  Similarity=0.157  Sum_probs=20.0

Q ss_pred             eeeecHHHHHHhhhcCCceEEEc
Q 043831           74 WYQLGMEEGFYLCHSLKCLKIVG   96 (243)
Q Consensus        74 ~L~Lsl~EA~yL~~~~g~L~V~~   96 (243)
                      .+-|.|+||+||+ ++|.|.+..
T Consensus        49 ~~~L~pEEalyLv-ErGsL~l~~   70 (72)
T PF12928_consen   49 KLWLLPEEALYLV-ERGSLDLWW   70 (72)
T ss_pred             eEEEeHHHHHHHH-hcCcEEEEe
Confidence            6889999999999 899999874

1.27.9 from EC) catalyse the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini [, ]. The genes encoding these proteins are homologous in eukaryotes and archea. The eukaryotic tRNA-splicing endonucleases are heterotetrameric while the archaeal endonucleases can be split into homodimeric and homotetrameric subgroups. This entry represents the N-terminal domain of Sen54, a non-catalytic subunit of the tRNA-splicing endonuclease complex. Defects in human Sen54 are a cause of pontocerebellar hypoplasia type 4 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
2cv8_A	180	Crystal Structure Of Trna-Intron Endonuclease From		3e-09
2zyz_B	183	Pyrobaculum Aerophilum Splicing Endonuclease Length		2e-08
1a79_A	171	Crystal Structure Of The Trna Splicing Endonuclease		9e-08
3p1z_B	186	Crystal Structure Of The Aperopyrum Pernix Rna Spli		1e-07
3ajv_B	186	Splicing Endonuclease From Aeropyrum Pernix Length		1e-06

>pdb|2CV8|A Chain A, Crystal Structure Of Trna-Intron Endonuclease From Sulfolobus Tokodaii Length = 180

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 67  TAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDE-LWQYMKAKKETFPLLYKAY 125
           +AE+      L + EG YL    K L+IV   N  + D E L+Q    +   F +LY  Y
Sbjct: 38  SAEEINSELILSLIEGVYLVKKGK-LEIV--SNGERLDFERLYQIGVTQIPRFRILYSVY 94
Query: 126 SHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAE 166
             LR+K +VVRSG +YG DF  Y   P + H+ Y V+ L E
Sbjct: 95  EDLREKGYVVRSGIKYGADFAVYTIGPGIEHAPYLVIALDE 135

>pdb|2ZYZ|B Chain B, Pyrobaculum Aerophilum Splicing Endonuclease Length = 183

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 18/173 (10%)
Query: 39  LAGYSALLAVEAEQTELLNR----ACFGRHIV-------TAEKDKQWYQLGMEEGFYLCH 87
           + GY   LAV  E  E   R      +GR +          EK      LG+ E  YL  
Sbjct: 1   MIGYLRGLAVIVEDVEFARRLYKEGFYGRFLGYDKVKRDEVEKINAPLILGLYEALYLAE 60
Query: 88  SLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVA 147
             + LK++GED      +EL    + +   F  +YK Y + R   +VV+SG ++G  F  
Sbjct: 61  KGR-LKVMGEDGREVAPEELAALGRERMRNFDEIYKIYKYFRDLGYVVKSGLKFGALFSV 119
Query: 148 YRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTI 200
           Y   P + H+   V+V  E + G +      +DI    RL   V KT  + T+
Sbjct: 120 YEKGPGIDHAP-MVVVFLEPDKGISA-----TDITRGGRLSHSVRKTWTLATV 166

>pdb|1A79|A Chain A, Crystal Structure Of The Trna Splicing Endonuclease From Methanococcus Jannaschii Length = 171

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 73  QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
            +  L + E  YL + L  L++  +DN   + +EL++Y +  +E   L Y  Y  LR + 
Sbjct: 33  NFLSLSLVEALYLIN-LGWLEVKYKDNKPLSFEELYEYARNVEERLCLKYLVYKDLRTRG 91
Query: 133 WVVRSGSQYGVDFVAYRHHPSL--VHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGG 190
           ++V++G +YG DF  Y    ++   HS Y V V  E          + S++   VR+   
Sbjct: 92  YIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSS------FLLSELTGFVRVAHS 145
Query: 191 VAKTLLILTINKNGQ 205
           V K LLI  ++ +G 
Sbjct: 146 VRKKLLIAIVDADGD 160

>pdb|3P1Z|B Chain B, Crystal Structure Of The Aperopyrum Pernix Rna Splicing Endonuclease Length = 186

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 34  EAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQW-----YQLGMEEGFYLCHS 88
           +A  VL G  ++L  + EQ   L    +    +  EK +        +L + E  YL   
Sbjct: 9   KASGVLIG-DSVLVTDVEQARSLYSCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLAEK 67
Query: 89  LKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAY 148
              L++   D S+   ++L   ++     F +LY  Y  LR++ +VVRSG ++G DF  Y
Sbjct: 68  -GVLEVAKPDGSSVGVEDLRTAVRGNPR-FSMLYNIYRDLRERGFVVRSGLKFGSDFAVY 125
Query: 149 RHHPSLVHSEYAV 161
           R  P + H+ + V
Sbjct: 126 RLGPGIDHAPFIV 138

>pdb|3AJV|B Chain B, Splicing Endonuclease From Aeropyrum Pernix Length = 186

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 34  EAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQW-----YQLGMEEGFYLCHS 88
           +A  VL G S L+  + EQ   L    +    +  EK +        +L + E  YL   
Sbjct: 9   KASGVLIGDSVLVT-DVEQARSLYSCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLAEK 67
Query: 89  LKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAY 148
              L++   D S+   ++L   ++     F +LY  Y  LR++ +VVRSG ++G DF  Y
Sbjct: 68  -GVLEVAKPDGSSVGVEDLRTAVRGNPR-FSMLYNIYRDLRERGFVVRSGLKFGSDFAVY 125
Query: 149 RHHPSLVHSEYAV 161
           R  P +  + + V
Sbjct: 126 RLGPGIDAAPFIV 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2zyz_B	183	TRNA-splicing endonuclease; crenarchaea, heterotet	2e-34
2cv8_A	180	TRNA-splicing endonuclease; tRNA-intron endonuclea	4e-34
1a79_A	171	TRNA endonuclease; 2.28A {Methanocaldococcus janna	1e-33
3ajv_B	186	TRNA-splicing endonuclease; ENDA, archaea crenarch	3e-32
1r0v_A	305	ENDA, tRNA-intron endonuclease, intron endonucleas	2e-28
3iey_A	154	TRNA-splicing endonuclease; protein heterodimer, e	4e-27
3iey_B	153	NEQ261; protein heterodimer, endonuclease, hydrola	2e-22
2ohc_A	289	TRNA-splicing endonuclease; intron, hydrolase; 2.5	2e-20
3ajv_A	190	Putative uncharacterized protein; ENDA, archaea cr	2e-05

>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum} Length = 183

 Score =  120 bits (303), Expect = 2e-34
 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 14/173 (8%)

Query: 37  AVLAGYSALLAVEAEQTELLNRACFGRHIVT-------AEKDKQWYQLGMEEGFYLCHSL 89
             L G + ++        L     +GR +          EK      LG+ E  YL    
Sbjct: 3   GYLRGLAVIVEDVEFARRLYKEGFYGRFLGYDKVKRDEVEKINAPLILGLYEALYLAEK- 61

Query: 90  KCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYR 149
             LK++GED      +EL    + +   F  +YK Y + R   +VV+SG ++G  F  Y 
Sbjct: 62  GRLKVMGEDGREVAPEELAALGRERMRNFDEIYKIYKYFRDLGYVVKSGLKFGALFSVYE 121

Query: 150 HHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINK 202
             P + H+   V+ L   +          +DI    RL   V KT  + T+ +
Sbjct: 122 KGPGIDHAPMVVVFLEPDKG------ISATDITRGGRLSHSVRKTWTLATVLR 168

>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii} Length = 180

 Score =  120 bits (301), Expect = 4e-34
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 13/174 (7%)

Query: 37  AVLAGYSALLAVEAEQTELLNRACFGR-----HIVTAEKDKQWYQLGMEEGFYLCHSLKC 91
             L     L+    +   +     +G+        +AE+      L + EG YL      
Sbjct: 3   GELVKDKILIKNIEDARLIYKMGYYGKPIGISKPKSAEEINSELILSLIEGVYLVKK-GK 61

Query: 92  LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
           L+IV       + + L+Q    +   F +LY  Y  LR+K +VVRSG +YG DF  Y   
Sbjct: 62  LEIVSNGERL-DFERLYQIGVTQIPRFRILYSVYEDLREKGYVVRSGIKYGADFAVYTIG 120

Query: 152 PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQ 205
           P + H+ Y V+ L E            ++I    R+     K L++  +N    
Sbjct: 121 PGIEHAPYLVIALDENSQIS------SNEILGFGRVSHSTRKELILGIVNLTNG 168

>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1 Length = 171

 Score =  118 bits (296), Expect = 1e-33
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 16/174 (9%)

Query: 34  EAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLK 93
           +   +L G   ++  +      L+   +G        +  +  L + E  YL + L  L+
Sbjct: 1   KITGLLDG-DRVIVFDKNGISKLSARHYGN------VEGNFLSLSLVEALYLIN-LGWLE 52

Query: 94  IVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPS 153
           +  +DN   + +EL++Y +  +E   L Y  Y  LR + ++V++G +YG DF  Y    +
Sbjct: 53  VKYKDNKPLSFEELYEYARNVEERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYERGAN 112

Query: 154 LV--HSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQ 205
           +   HS Y V V  E          + S++   VR+   V K LLI  ++ +G 
Sbjct: 113 IDKEHSVYLVKVFPEDSS------FLLSELTGFVRVAHSVRKKLLIAIVDADGD 160

>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_B Length = 186

 Score =  115 bits (289), Expect = 3e-32
 Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 25/201 (12%)

Query: 32  QSEAHAVLAGYSALLAVEAEQTELLNRACFGRHI----VTAEKDKQWYQLGMEEGFYLCH 87
             +A  VL G S L+    +   L +   +G+ +          +   +L + E  YL  
Sbjct: 7   PIKASGVLIGDSVLVTDVEQARSLYSCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLAE 66

Query: 88  SLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVA 147
               L++   D S+   ++L   ++     F +LY  Y  LR++ +VVRSG ++G DF  
Sbjct: 67  -KGVLEVAKPDGSSVGVEDLRTAVR-GNPRFSMLYNIYRDLRERGFVVRSGLKFGSDFAV 124

Query: 148 YRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGT 207
           YR  P +  + + V   +  ++          +I    RL   V K  +           
Sbjct: 125 YRLGPGIDAAPFIVHAYSPEDN------IDPVEIVRAGRLSHSVRKKFVFAVTRGGD--- 175

Query: 208 ATPSCLEQYAVEERTISRWSP 228
                     V    I  + P
Sbjct: 176 ----------VSYLMIDWFRP 186

>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A Length = 305

 Score =  108 bits (271), Expect = 2e-28
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 16/150 (10%)

Query: 48  VEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDEL 107
           V  +QTE+ +R  +G       +      L + E  YL   L  L ++  D      +EL
Sbjct: 158 VITKQTEIFSRYFYGS------EKGDLVTLSLIESLYLL-DLGKLNLLNAD-----REEL 205

Query: 108 WQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEG 167
            +  +  +  F   Y+ Y +L+++ +VV++G ++G +F  YR   S+    ++  ++   
Sbjct: 206 VKRAREVERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVDIA 265

Query: 168 EDGENGRLRVWSDIHCTVRLCGGVAKTLLI 197
           +  E        D+   VRL   V K ++ 
Sbjct: 266 DSRE----IRLIDLARAVRLAQNVRKRMVF 291

>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} Length = 154

 Score =  101 bits (252), Expect = 4e-27
 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 76  QLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVV 135
           +L + E +YL      L++  +D    + +E  +      E F + YKAY  LR K + +
Sbjct: 16  ELPLIEAYYLLD-KGELEVYEDDKKL-SKEEFLKKCLTYDERFLIRYKAYKELRDKGYTL 73

Query: 136 RSGSQYGVDFVAYRH--------HPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRL 187
            +  ++G DF  Y               HS++ +  +++ E         + +     R+
Sbjct: 74  GTALKFGADFRVYDIGVIPKKGKRSEREHSKWVLYPVSKDET------FDFYEFASKNRV 127

Query: 188 CGGVAKTLLILTINKN 203
                K +L+  ++  
Sbjct: 128 AHSTRKKMLMGIVSDK 143

>3iey_B NEQ261; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} PDB: 3if0_X Length = 153

 Score = 88.8 bits (220), Expect = 2e-22
 Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 15/138 (10%)

Query: 69  EKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHL 128
                + ++   E  ++  +    K   +D    ++  + +    K + F  +Y     L
Sbjct: 15  YNMGNYIKISEPELLFVLRN----KPQIKDRLKLDEKTIIKEGVKKYKNFWEIYYTVKDL 70

Query: 129 RKKNWVVRSGSQYGVDFVAYR--HHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVR 186
             + + VR     G     Y     P  +  +Y V  ++            W ++     
Sbjct: 71  ILRGYRVRFD---GFFIELYEKGIIPGTIEQDYLVYPVSGEIR------MTWGELLDIYN 121

Query: 187 LCGGVAKTLLILTINKNG 204
                    ++  ++  G
Sbjct: 122 KAIARKSKFMLAIVDSEG 139

>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A Length = 289

 Score = 86.8 bits (214), Expect = 2e-20
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 9/162 (5%)

Query: 43  SALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTK 102
                V+ E    +  +                 +    G           I    +  +
Sbjct: 124 DYYFTVDEEGDPTVYSSQEIFPGGRNLVSPVSAPVVRMGGRSFGAGDLEWWIGTAFHGFR 183

Query: 103 NDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVL 162
              E      +   +   +   YS L  +  +V++G +YG +F  Y       H+EY V 
Sbjct: 184 LLTENEANYISGNHSASQVDMVYSDLVGRGCIVKTGFKYGANFRVYL-GRDSQHAEYLVS 242

Query: 163 VLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNG 204
           V+ E E         W  I   VR+   V KT++  +I KN 
Sbjct: 243 VMPEEER--------WYSISRGVRVASSVRKTMIYASIYKNE 276

>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A Length = 190

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 18/132 (13%)

Query: 76  QLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVV 135
           +L   E  Y       L +          + +     +           Y  LR+K    
Sbjct: 66  RLEPLEAAYQASR-GMLCMGETRGWAAAVEVIAGLGLSLDT-----ALVYFDLRRKGRKP 119

Query: 136 RSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTL 195
             G + G   + Y H        Y VLVL+EG             +    R       + 
Sbjct: 120 LVGVRRG--TLVYEHGG----RVYEVLVLSEGYP------LKIGSLVEWSRGASMDNHSP 167

Query: 196 LILTINKNGQGT 207
           ++  +++ G  T
Sbjct: 168 IVAIVDRTGLIT 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2zyz_B	183	TRNA-splicing endonuclease; crenarchaea, heterotet	100.0
2cv8_A	180	TRNA-splicing endonuclease; tRNA-intron endonuclea	100.0
3ajv_B	186	TRNA-splicing endonuclease; ENDA, archaea crenarch	100.0
1a79_A	171	TRNA endonuclease; 2.28A {Methanocaldococcus janna	100.0
3iey_A	154	TRNA-splicing endonuclease; protein heterodimer, e	100.0
1r0v_A	305	ENDA, tRNA-intron endonuclease, intron endonucleas	100.0
3iey_B	153	NEQ261; protein heterodimer, endonuclease, hydrola	100.0
4fz2_A	395	TRNA intron endonuclease; tRNA splicing endonuclea	100.0
2ohc_A	289	TRNA-splicing endonuclease; intron, hydrolase; 2.5	99.97
3ajv_A	190	Putative uncharacterized protein; ENDA, archaea cr	99.95
1r0v_A	305	ENDA, tRNA-intron endonuclease, intron endonucleas	99.86
2ohc_A	289	TRNA-splicing endonuclease; intron, hydrolase; 2.5	99.77
2zyz_A	116	Putative uncharacterized protein PAE0789; crenarch	99.71
4fz2_A	395	TRNA intron endonuclease; tRNA splicing endonuclea	99.63

>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}

Probab=100.00  E-value=9.9e-44  Score=302.90  Aligned_cols=161  Identities=27%  Similarity=0.417  Sum_probs=147.4

Q ss_pred             eEEEEeCCeEEEeechhhH-HHHHhccccccccc-----Cccc--CceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHH
Q 043831           35 AHAVLAGYSALLAVEAEQT-ELLNRACFGRHIVT-----AEKD--KQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDE  106 (243)
Q Consensus        35 ~~g~L~g~~V~v~~~~~~~-~L~~~~~yG~~~~~-----~~~~--~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~e  106 (243)
                      |+|.|.+|+|+| ++.+.. .||++++||++.+.     ++++  .++|+|||+||+||+ ++|+|+|.+.++.++|+++
T Consensus         1 ~~~~l~~~~v~v-~d~~~~~~L~~~~~~G~~~g~~~p~~~~~~~~~~~L~Ls~eEa~yL~-~~g~l~v~d~~~~~ls~~e   78 (183)
T 2zyz_B            1 MIGYLRGLAVIV-EDVEFARRLYKEGFYGRFLGYDKVKRDEVEKINAPLILGLYEALYLA-EKGRLKVMGEDGREVAPEE   78 (183)
T ss_dssp             CEEEECSSEEEE-CCHHHHHHHHHTTCCSEETTCCSCCGGGGGGCCSCEEEEHHHHHHHH-HTTSCEEECTTSCEECHHH
T ss_pred             CeEEEECCEEEE-EccHHHHHHHHCCccceECCCCCCCCcccccCcceEEeeHHHHHHHH-HCCCEEEECCCCCcCCHHH
Confidence            689999999999 666654 59999999999983     2233  378999999999999 7999999987789999999


Q ss_pred             HHHHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhh
Q 043831          107 LWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVR  186 (243)
Q Consensus       107 l~~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~R  186 (243)
                      +|+.+...++.|..+|.||+|||++||+|+||+|||+||+||+++|.++||+|+|+++++++.++      |.+|++.+|
T Consensus        79 l~~~~~~~~~~f~~~y~vy~~lr~~G~~v~~G~kfG~df~vY~~~P~~~Hs~~~V~v~~~~~~~~------~~~l~~~~R  152 (183)
T 2zyz_B           79 LAALGRERMRNFDEIYKIYKYFRDLGYVVKSGLKFGALFSVYEKGPGIDHAPMVVVFLEPDKGIS------ATDITRGGR  152 (183)
T ss_dssp             HHHHHHHHSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEESSCSSSSSCCEEEEECCTTCCBC------HHHHHHHHH
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHCCeEeccccccCceEEEEcCCCCCccceEEEEEecCCCccC------HHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999887655      999999999


Q ss_pred             hcccccCcEEEEEEecC
Q 043831          187 LCGGVAKTLLILTINKN  203 (243)
Q Consensus       187 la~sVkK~llla~v~~~  203 (243)
                      +|++|||++|+|+|+++
T Consensus       153 la~~vkK~~vla~v~~~  169 (183)
T 2zyz_B          153 LSHSVRKTWTLATVLRQ  169 (183)
T ss_dssp             HCCSTTCCEEEEEECTT
T ss_pred             heeccccEEEEEEEECC
Confidence            99999999999999853

>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.7e-43  Score=300.81  Aligned_cols=160  Identities=27%  Similarity=0.407  Sum_probs=134.3

Q ss_pred             eEEEEeCCeEEEeechhhH-HHHHhcccccccccC--c---ccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHH
Q 043831           35 AHAVLAGYSALLAVEAEQT-ELLNRACFGRHIVTA--E---KDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELW  108 (243)
Q Consensus        35 ~~g~L~g~~V~v~~~~~~~-~L~~~~~yG~~~~~~--~---~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~  108 (243)
                      |+|.|.+|+|+| ++.++. .||++++||++.++.  .   ...++|+|||+||+||+ .+|+|+|.+ ++.++|++++|
T Consensus         1 ~~~~l~~~~v~v-~d~~~~~~L~~~~~yG~~~g~~~p~~~~~~~~~L~Ls~eEA~yL~-~~g~l~v~d-~~~~ls~~el~   77 (180)
T 2cv8_A            1 MIGELVKDKILI-KNIEDARLIYKMGYYGKPIGISKPKSAEEINSELILSLIEGVYLV-KKGKLEIVS-NGERLDFERLY   77 (180)
T ss_dssp             CEEEEETTEEEE-CCHHHHHHHHHHHSCSEECC-----------CCEEEEHHHHHHHH-HTTSCEEEE-TTEEECHHHHH
T ss_pred             CeEEEECCEEEE-EchHHHHHHHHCCccceEcCCCCccccccCCceEEEeHHHHHHHH-HCCCEEEee-CCCCCCHHHHH
Confidence            689999999999 666644 599999999998751  1   23368999999999999 599999986 56889999999


Q ss_pred             HHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhc
Q 043831          109 QYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLC  188 (243)
Q Consensus       109 ~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla  188 (243)
                      +.+...++.|..+|.||+|||++||+|+||+|||+||+||+++|.++||+|+|+++++++.++      |.+|++.+|+|
T Consensus        78 ~~~~~~~~~f~~~y~VY~~Lr~~G~~v~~G~kfG~df~vY~~~P~~~Hs~~~V~v~~~~~~~~------~~~l~~~~Rla  151 (180)
T 2cv8_A           78 QIGVTQIPRFRILYSVYEDLREKGYVVRSGIKYGADFAVYTIGPGIEHAPYLVIALDENSQIS------SNEILGFGRVS  151 (180)
T ss_dssp             HHHHHHSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEECSCC-----CEEEEEEETTCEEE------HHHHTTSSSCC
T ss_pred             HHHhhhcccHHHHhHHHHHHHhCCeEeccccccCceEEEEcCCCCCccccEEEEEEcCCCCcC------HHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999887655      99999999999


Q ss_pred             ccccCcEEEEEEecC
Q 043831          189 GGVAKTLLILTINKN  203 (243)
Q Consensus       189 ~sVkK~llla~v~~~  203 (243)
                      ++|||++|+|+|++.
T Consensus       152 ~~v~K~~vla~v~~~  166 (180)
T 2cv8_A          152 HSTRKELILGIVNLT  166 (180)
T ss_dssp             ----CEEEEEEECTT
T ss_pred             hccccEEEEEEEECC
Confidence            999999999999853

>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_B

Probab=100.00  E-value=4.9e-43  Score=299.52  Aligned_cols=160  Identities=25%  Similarity=0.403  Sum_probs=145.0

Q ss_pred             CcceEEEEeCCeEEEeechh-hHHHHHhcccccccccC----cccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHH
Q 043831           32 QSEAHAVLAGYSALLAVEAE-QTELLNRACFGRHIVTA----EKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDE  106 (243)
Q Consensus        32 ~~~~~g~L~g~~V~v~~~~~-~~~L~~~~~yG~~~~~~----~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~e  106 (243)
                      ..++.|.|.||+|+| ++.+ ...||++++||++.+..    .+..++|+|||+||+||+ .+|+|+|.+.++..+|+++
T Consensus         7 ~~~~~~~l~~~~v~v-~d~~~~~~L~~~~~yG~~~g~~~p~~~~~~~~L~Ls~~Ea~yL~-~~g~l~v~~~~~~~ls~~e   84 (186)
T 3ajv_B            7 PIKASGVLIGDSVLV-TDVEQARSLYSCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLA-EKGVLEVAKPDGSSVGVED   84 (186)
T ss_dssp             CCCEEEEEETTEEEE-CCHHHHHHHHHTTCCSEESSCSSCSTTCCCCCEEEEHHHHHHHH-HTTSEEEECTTSCEECHHH
T ss_pred             CcceeEEEECCEEEE-EccHHHHHHHHCCccceECCCCCCCccCCCceEEEeHHHHHHHH-HCCCEEEECCCCCcCCHHH
Confidence            457899999999999 6655 44599999999999831    122379999999999999 7999999987788999999


Q ss_pred             HHHHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhh
Q 043831          107 LWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVR  186 (243)
Q Consensus       107 l~~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~R  186 (243)
                      +|+. +..++.|..+|.||+|||++||+|+||+|||+||+||+++|.++||+|+|+++++++.++      |.+|++.+|
T Consensus        85 l~~~-~~~~~~f~~~y~VY~dLr~rG~~v~~G~kfG~dflvY~~~P~~~Hs~~~V~v~~~~~~~~------~~~l~~~~R  157 (186)
T 3ajv_B           85 LRTA-VRGNPRFSMLYNIYRDLRERGFVVRSGLKFGSDFAVYRLGPGIDAAPFIVHAYSPEDNID------PVEIVRAGR  157 (186)
T ss_dssp             HHHH-HHTSHHHHHHHHHHHHHHHTTCEEEECGGGTSSEEEESSCTTTSSSCEEEEEECTTCEEC------THHHHHHHH
T ss_pred             HHHH-hhccchHHHHhhHHHHHHhCceEeccccccCceEEEECCCCCCccccEEEEEEcCCCCcC------HHHHHhhhh
Confidence            9999 677899999999999999999999999999999999999999999999999999887655      999999999


Q ss_pred             hcccccCcEEEEEE
Q 043831          187 LCGGVAKTLLILTI  200 (243)
Q Consensus       187 la~sVkK~llla~v  200 (243)
                      +|++|||++|+|++
T Consensus       158 la~~vkK~~vla~v  171 (186)
T 3ajv_B          158 LSHSVRKKFVFAVT  171 (186)
T ss_dssp             HHTTTCSEEEEEEE
T ss_pred             hhhccccEEEEEEE
Confidence            99999999999999

>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1

Probab=100.00  E-value=7.1e-43  Score=294.73  Aligned_cols=155  Identities=28%  Similarity=0.462  Sum_probs=142.4

Q ss_pred             eEEEEeCCeEEEeechhhHH-HHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHh
Q 043831           35 AHAVLAGYSALLAVEAEQTE-LLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKA  113 (243)
Q Consensus        35 ~~g~L~g~~V~v~~~~~~~~-L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~  113 (243)
                      |.|.|.+|+|+| ++.+... |++ ++||++.+.      +|+|||+||+||++ +|+|+|.+.++.++|++++|+.+..
T Consensus         2 ~~~~l~~~~v~v-~~~~~~~~L~~-~~yG~~~~~------~L~Ls~~Ea~yL~~-~g~l~v~~~~~~~l~~~el~~~~~~   72 (171)
T 1a79_A            2 ITGLLDGDRVIV-FDKNGISKLSA-RHYGNVEGN------FLSLSLVEALYLIN-LGWLEVKYKDNKPLSFEELYEYARN   72 (171)
T ss_dssp             EEEEEETTEEEE-CCHHHHHHHHH-TTCSEECSS------CEEEEHHHHHHHHH-HTCEEEECSSSSCCCHHHHHHHHHH
T ss_pred             ceEEEECCEEEE-ECcHHHHHHHh-CcCceEcCC------eEEEeHHHHHHHHH-cCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            789999999999 7776554 655 999999976      89999999999995 9999998765556999999999999


Q ss_pred             cCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeC-C-CCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccc
Q 043831          114 KKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRH-H-PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGV  191 (243)
Q Consensus       114 ~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~-~-P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sV  191 (243)
                      .+++|..+|.||+|||+|||+|+||+|||+||+||++ + |..+||+|+|+|+++++.++      |.+|++.+|+|++|
T Consensus        73 ~~~~f~~~y~VY~dLr~rG~~v~~G~kfG~df~vY~~g~~P~~~Hs~~~V~v~~~~~~~~------~~~l~~~~Rla~~v  146 (171)
T 1a79_A           73 VEERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSSFL------LSELTGFVRVAHSV  146 (171)
T ss_dssp             HCTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEECSSCCTTTSCCSEEEEEEETTSEEC------THHHHHHHHHHHHT
T ss_pred             ccccHHHHhHHHHHHHHCCeEecccccCCceEEEEeCCCCCCCccceEEEEEEcCCCccC------HHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999 9 99999999999999887765      99999999999999


Q ss_pred             cCcEEEEEEecCC
Q 043831          192 AKTLLILTINKNG  204 (243)
Q Consensus       192 kK~llla~v~~~~  204 (243)
                      +|++|+|+|+.++
T Consensus       147 ~K~~vla~v~~~~  159 (171)
T 1a79_A          147 RKKLLIAIVDADG  159 (171)
T ss_dssp             TCEEEEEEECTTS
T ss_pred             CcEEEEEEEeCCC
Confidence            9999999998544

>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans}

Probab=100.00  E-value=1.5e-38  Score=264.53  Aligned_cols=121  Identities=22%  Similarity=0.399  Sum_probs=109.1

Q ss_pred             ceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCC-
Q 043831           73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH-  151 (243)
Q Consensus        73 ~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~-  151 (243)
                      +.|+|||+||+||++ .|+|+|.+ ++.+||++++|+.|++.+++|..+|.||+|||++||+|+||+|||+||+||++| 
T Consensus        13 e~L~Ls~~EA~YL~~-~G~L~v~~-~~~~ls~~el~~~~~~~~~~f~~~y~vY~dLr~rG~~vk~G~KFG~dF~vY~~g~   90 (154)
T 3iey_A           13 DDKELPLIEAYYLLD-KGELEVYE-DDKKLSKEEFLKKCLTYDERFLIRYKAYKELRDKGYTLGTALKFGADFRVYDIGV   90 (154)
T ss_dssp             C--CEEHHHHHHHHH-HTSCCCCS-CCC----HHHHHHHHHHCTTHHHHHHHHHHHHHTTCEEEEEGGGTEEEEEECSSC
T ss_pred             ceEEEcHHHHHHHHH-CCCEEEEE-CCCcCCHHHHHHHHHhcCccHHHHHHHHHHHHHCCcEECCCCccCceEEEECCCC
Confidence            589999999999995 69999976 578999999999999999999999999999999999999999999999999998 


Q ss_pred             -C------CCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEEEEEe
Q 043831          152 -P------SLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTIN  201 (243)
Q Consensus       152 -P------~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~llla~v~  201 (243)
                       |      ..+||+|+|+++++++.++      |.+|++.+|+|++|||++|+|+|+
T Consensus        91 ~P~~~~~~~~~Hs~~lV~v~~~~~~~~------~~~l~~~~Rla~~VkK~~vla~vd  141 (154)
T 3iey_A           91 IPKKGKRSEREHSKWVLYPVSKDETFD------FYEFASKNRVAHSTRKKMLMGIVS  141 (154)
T ss_dssp             CSSTTTCCSSSSCSCEEEEEETTCEEE------HHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             CccccccccccCceEEEEEeCCCCccC------HHHHHHHHHHHhhCCcEEEEEEEC
Confidence             7      8999999999999887655      999999999999999999999997

>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A

Probab=100.00  E-value=1.5e-37  Score=283.35  Aligned_cols=147  Identities=27%  Similarity=0.441  Sum_probs=131.7

Q ss_pred             CcceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHH
Q 043831           32 QSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYM  111 (243)
Q Consensus        32 ~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~  111 (243)
                      ..+|+|. .+|+|++ +++  ..||+++|||++.++      +|||||+||+||++ .|||+|.+.     +.+++|+.+
T Consensus       146 ~~~~~g~-l~d~vv~-~~~--~~ly~~~~yG~~~~~------~L~Lsl~EA~yL~~-~g~L~v~~~-----~~~el~~~~  209 (305)
T 1r0v_A          146 LPEIAGV-LSDEYVI-TKQ--TEIFSRYFYGSEKGD------LVTLSLIESLYLLD-LGKLNLLNA-----DREELVKRA  209 (305)
T ss_dssp             CCCEEEE-EETTEEE-ESC--THHHHTTCCSEEETT------EEEECHHHHHHHHH-HTCEEETTC-----CHHHHHHHH
T ss_pred             cccceEE-EcCcEEE-ECc--hhhhhcCCCCcccCC------eeEEcHHHHHHHHh-cCcEEEecC-----CHHHHHHHH
Confidence            4578899 6666666 333  458999999999987      89999999999995 799999642     349999999


Q ss_pred             HhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCC---CCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhc
Q 043831          112 KAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPS---LVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLC  188 (243)
Q Consensus       112 ~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~---~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla  188 (243)
                      +..+++|..+|.||+|||+|||+|+||+||||||+||+++|.   .+||+|+|+ +++++.++      |.+|++.+|+|
T Consensus       210 ~~~~~~f~~~y~VY~dLR~rG~vvk~G~KFG~DFlvY~~~p~~~~~~Hs~~~V~-~~~~~~~~------~~~l~~~~Rla  282 (305)
T 1r0v_A          210 REVERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVD-IADSREIR------LIDLARAVRLA  282 (305)
T ss_dssp             HHHSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEESCCSSGGGGGGCSEEEE-ECTTSCBC------HHHHHHHHHHH
T ss_pred             hhcCcchhhhhhHHHHHHHCCCEeccCcccCcEEEEECCCCCcccccchhEEEE-eCCCCccC------HHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999   999999999 78777655      99999999999


Q ss_pred             ccccCcEEEEEEe
Q 043831          189 GGVAKTLLILTIN  201 (243)
Q Consensus       189 ~sVkK~llla~v~  201 (243)
                      ++|||++|+|+++
T Consensus       283 ~~VkK~lvla~v~  295 (305)
T 1r0v_A          283 QNVRKRMVFAYGK  295 (305)
T ss_dssp             HHTTCEEEEEETT
T ss_pred             hccceEEEEEEEe
Confidence            9999999999986

>3iey_B NEQ261; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} PDB: 3if0_X

Probab=100.00  E-value=9.8e-36  Score=247.35  Aligned_cols=128  Identities=13%  Similarity=0.214  Sum_probs=119.7

Q ss_pred             hcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCccchhhhhchhhhhcCeEecc
Q 043831           58 RACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRS  137 (243)
Q Consensus        58 ~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F~~~y~VY~dLR~rG~vvks  137 (243)
                      -.+||++.++      .|+|||+||+||+  +|+|+|.  ++.+++++++|+.|+..+++|..+|.||+|||+|||+|+|
T Consensus        10 ~~~~G~~~~~------~L~Ls~~EA~yL~--~g~l~v~--~~~~l~~~~l~~~~~~~~~~F~~~y~VY~dLR~rG~~vk~   79 (153)
T 3iey_B           10 VYYLGYNMGN------YIKISEPELLFVL--RNKPQIK--DRLKLDEKTIIKEGVKKYKNFWEIYYTVKDLILRGYRVRF   79 (153)
T ss_dssp             GTTCSEECSS------SEECCHHHHHHHH--HHCTHHH--HHHTCCHHHHHHHHHHHCTTHHHHHHHHHHHHHTTCEEEE
T ss_pred             heeeeeEcCC------EEEECHHHHHHHh--cCCEEec--cCCcCCHHHHHHHHHhcCcchhhhhHHHHHHHHCCCEEee
Confidence            4679999988      7999999999999  7999983  5677999999999999999999999999999999999999


Q ss_pred             CCcCCccEEEeeCC--CCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEEEEEecCC
Q 043831          138 GSQYGVDFVAYRHH--PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNG  204 (243)
Q Consensus       138 G~KFG~DF~vY~~~--P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~llla~v~~~~  204 (243)
                      |   |+||+||++|  |..+||+|+|+|+++++.++      |.+|++.+|+|++|+|++|+|+|+.++
T Consensus        80 G---G~DFlvY~~g~~P~~~Ha~~~V~v~~e~~~i~------~~~L~~~~Rla~~VkK~~vla~Vd~~g  139 (153)
T 3iey_B           80 D---GFFIELYEKGIIPGTIEQDYLVYPVSGEIRMT------WGELLDIYNKAIARKSKFMLAIVDSEG  139 (153)
T ss_dssp             C---SSSEEEECTTCCTTSSCCSEEEEEEETTCEEE------HHHHHHHHHHHHHTTCEEEEEEECTTS
T ss_pred             C---CCeEEEEcCCCCCCcCcccEEEEEccCCCccC------HHHHHHHHHHhhccCcEEEEEEEcCCC
Confidence            9   9999999998  99999999999999987765      999999999999999999999998876

>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}

Probab=100.00  E-value=2.6e-34  Score=268.23  Aligned_cols=149  Identities=19%  Similarity=0.306  Sum_probs=130.7

Q ss_pred             eEEEeechhhHH-HHHhcccccccccCc-ccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCccch
Q 043831           43 SALLAVEAEQTE-LLNRACFGRHIVTAE-KDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL  120 (243)
Q Consensus        43 ~V~v~~~~~~~~-L~~~~~yG~~~~~~~-~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F~~  120 (243)
                      .+.+ +|.+... +|+.+++|++.+... .+.+.|||||+||+||+ ..|+|+|.+     ++.+++++.+...+++|..
T Consensus       136 i~~v-~DeE~~~t~ye~~~~g~~g~~~~~~~~~~LqLSlvEA~YL~-~~G~L~V~~-----~s~~el~~~~~~~~~~F~~  208 (395)
T 4fz2_A          136 VTVI-DDDESGKDLYENFWLGQYGTYKVSEHGNLNKLDIYETLFLI-DMGVISIKN-----FTRAQIVNIASARRTDIMK  208 (395)
T ss_dssp             EEEE-SCHHHHHHHHHHHCCSEESBTTBSSSCCCEEECHHHHHHHH-HTTCEEESS-----CCHHHHHHHHHHHCTTHHH
T ss_pred             eEEE-eccccccchhhhcccccCccccccCCCcceeecHHHHHHHH-hCCCEEeec-----CCHHHHHHHHhhcchhhhh
Confidence            3444 6655444 899999999887633 34468999999999999 799999953     7999999999999999999


Q ss_pred             hhhhchhhhhcCeEeccCCcCCccEEEeeCC-------CCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccC
Q 043831          121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH-------PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAK  193 (243)
Q Consensus       121 ~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~-------P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK  193 (243)
                      +|.||+|||++||+||||+||||||+||++|       |...||+|+|+++++++.++      |.+|++.+||||+|||
T Consensus       209 kY~VY~dLR~rG~vvksG~KFG~dFrvY~rG~~~~~~~p~~~Hs~~lV~v~~~~~~~~------~~~l~~~~RLa~sVrK  282 (395)
T 4fz2_A          209 LYDVYKDWRTKGYVVKTGFKFGTNFRIYFPGAKPIKENNEWIHSKHVLHVFPRDSKLI------ISEWARAIRVAHSVRK  282 (395)
T ss_dssp             HHHHHHHHHTTTCEEEEEGGGTEEEEEECTTCCTTTTTTTSCCCCEEEEECCTTCEEE------HHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHCCCEeCcCcccCceEEEeecccccccCCCCccchheEEEEeCCCCeeC------HHHHHhhhehhcccce
Confidence            9999999999999999999999999999864       99999999999999888765      9999999999999999


Q ss_pred             cEEEEEEecCC
Q 043831          194 TLLILTINKNG  204 (243)
Q Consensus       194 ~llla~v~~~~  204 (243)
                      +||+|+++.++
T Consensus       283 ~~ilAi~~~~~  293 (395)
T 4fz2_A          283 TFILAIPGKTR  293 (395)
T ss_dssp             EEEEEECSSCC
T ss_pred             EEEEEEECCCC
Confidence            99999876543

>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A

Probab=99.97  E-value=2.3e-32  Score=247.20  Aligned_cols=121  Identities=26%  Similarity=0.369  Sum_probs=109.3

Q ss_pred             CcceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHH
Q 043831           32 QSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYM  111 (243)
Q Consensus        32 ~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~  111 (243)
                      ..++.|.|.||+|+| ++.    |  ++|||++.++     ++| |||+||+||++                        
T Consensus       153 ~~~~~~~l~~~rv~v-~d~----L--~~~yG~~~~~-----~~L-Lsl~Ea~yL~~------------------------  195 (289)
T 2ohc_A          153 PVSAPVVRMGGRSFG-AGD----L--EWWIGTAFHG-----FRL-LTENEANYISG------------------------  195 (289)
T ss_dssp             CCCCCCEEETTEEEE-ETT----S--CTTSSEEETT-----EEE-ECHHHHHHHTT------------------------
T ss_pred             CccceEEEeCCEEEE-Ech----h--hhhcCCcCCC-----ccc-CCHHHHHHHhh------------------------
Confidence            567889999999999 555    5  8999999995     489 99999999995                        


Q ss_pred             HhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccc
Q 043831          112 KAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGV  191 (243)
Q Consensus       112 ~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sV  191 (243)
                      +..+++|   |.||+|||++||+||||+||||||+||+++|. +||+|+|++++++  ++      |.+|++.+|||++|
T Consensus       196 ~~~~~~f---y~VY~dLR~rG~vvk~G~KFG~DFlvY~~~P~-~Hs~~lV~v~~~~--~~------~~dl~~~~Rla~sV  263 (289)
T 2ohc_A          196 NHSASQV---DMVYSDLVGRGCIVKTGFKYGANFRVYLGRDS-QHAEYLVSVMPEE--ER------WYSISRGVRVASSV  263 (289)
T ss_dssp             CTTSSHH---HHHHHHHHHTTCEEEECGGGTSSEEEESSTTC-SSCSEEEEECCSS--EE------HHHHHHHHHHHHHT
T ss_pred             cccchhH---HHHHHHHHHCCCEEcccccCCceEEEECCCCC-CCccEEEEEEcCC--CC------HHHHhhheeeeeec
Confidence            1234566   99999999999999999999999999999999 9999999999876  44      99999999999999


Q ss_pred             cCcEEEEEEe
Q 043831          192 AKTLLILTIN  201 (243)
Q Consensus       192 kK~llla~v~  201 (243)
                      +|++|+|+++
T Consensus       264 kK~lila~v~  273 (289)
T 2ohc_A          264 RKTMIYASIY  273 (289)
T ss_dssp             TCEEEEEEEE
T ss_pred             CcEEEEEEEE
Confidence            9999999998

>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A

Probab=99.95  E-value=6.1e-28  Score=206.14  Aligned_cols=148  Identities=16%  Similarity=0.035  Sum_probs=125.9

Q ss_pred             cCcceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHH
Q 043831           31 IQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQY  110 (243)
Q Consensus        31 ~~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~  110 (243)
                      ..++..+.|--..|-|...-..+...++..||+..++      .  |||+||+||++ +|+|++.    +.+++++|++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~yG~~~~~------~--Ls~vEAlYL~~-~G~L~v~----~~~~~~eL~~~   95 (190)
T 3ajv_A           29 AGCKAAARLGVEGVFVEECFDGSYCRNLERIGYLRKG------R--LEPLEAAYQAS-RGMLCMG----ETRGWAAAVEV   95 (190)
T ss_dssp             TTCSEEEEEETTEEEEEEESSHHHHHHHHHHTSEETT------E--ECHHHHHHHHH-HTCEEET----TBCHHHHHHHH
T ss_pred             ccchHhHhcCcceEeeecccCchheecccccccccCC------e--ECHHHHHHHHh-cCcEeec----CCCCHHHHHHH
Confidence            4567777887778888555455567788899998877      3  99999999995 7889872    46899999999


Q ss_pred             HHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhccc
Q 043831          111 MKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGG  190 (243)
Q Consensus       111 ~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~s  190 (243)
                      +.. .+.|..+|.||+|||+|||+|+||+||  ||+||++  +..||+++  |+++++.++      |.+|++.+|+|++
T Consensus        96 ~~~-~~~f~~kY~VYkDLR~RGy~Vk~G~Kf--dflVY~r--g~~Ha~vl--Vl~E~~~i~------~~dL~~~vRla~s  162 (190)
T 3ajv_A           96 IAG-LGLSLDTALVYFDLRRKGRKPLVGVRR--GTLVYEH--GGRVYEVL--VLSEGYPLK------IGSLVEWSRGASM  162 (190)
T ss_dssp             HHH-TTCCHHHHHHHHHHHHTTCCCEECSST--TEEEEEE--TTEEEEEE--EEETTCCEE------HHHHHHHHHHHHH
T ss_pred             Hhh-CCCcceEEEeHHHHHhCCCEEeecCCC--CeEEEcC--CCCceEEE--EEcCCCccC------HHHHHHHHHHhhc
Confidence            877 779999999999999999999999988  5999999  68899954  667777655      9999999999999


Q ss_pred             ccCcEEEEEEecCC
Q 043831          191 VAKTLLILTINKNG  204 (243)
Q Consensus       191 VkK~llla~v~~~~  204 (243)
                      |+|++|||+|+.++
T Consensus       163 VrK~lVLAiVd~eG  176 (190)
T 3ajv_A          163 DNHSPIVAIVDRTG  176 (190)
T ss_dssp             TTCEEEEEEECTTC
T ss_pred             cccEEEEEEEcCCC
Confidence            99999999999766

>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A

Probab=99.86  E-value=2.9e-22  Score=182.52  Aligned_cols=125  Identities=18%  Similarity=0.264  Sum_probs=61.2

Q ss_pred             EeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCcc
Q 043831           39 LAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF  118 (243)
Q Consensus        39 L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F  118 (243)
                      |.||.|+|..+..    |+++|||++.++      .|+|+|+||+||++ .|. +|.  ++  +  +++++.+...++.|
T Consensus         2 l~~~~v~~~~~~~----l~~~~yG~~~~~------~l~L~~~Ea~YL~~-~~~-~i~--~~--~--~~l~~~~~~~~~~~   63 (305)
T 1r0v_A            2 IGGDFAVVKAKKS----LERRGFGVKRGD------KIYLHPLEVVYLQI-KGI-ESF--GE--L--EDVLSWAESRMEDF   63 (305)
T ss_dssp             ------------------------------------------------------------------------------CH
T ss_pred             ccCCEEEEccccc----cccCcCCcccCC------EEEEeHHHHHHHHH-cCC-chH--hh--H--HHHHHHHHhcccch
Confidence            6789999944433    789999999877      79999999999996 444 765  22  4  89999998889999


Q ss_pred             chhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEEE
Q 043831          119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLIL  198 (243)
Q Consensus       119 ~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~llla  198 (243)
                      ..+|.||+|||+|||+|+||    +||+||++ |        |.|+++++.++      +.+|++.+|+|++|+    +|
T Consensus        64 ~~~y~VY~DLR~RGy~v~~g----~df~vy~k-p--------v~v~~E~~~i~------~~~l~~~~~~a~~v~----lA  120 (305)
T 1r0v_A           64 STYYFVYEDLRDRGNKVKIQ----GEFLLTKK-P--------YLPISERKTIR------MEEIAEKARNFDELR----LA  120 (305)
T ss_dssp             HHHHHHHHHHHHTTCCCEEE----TTEEESSS-E--------EEEEETTSCBC------HHHHHHHTTTCSSCE----EE
T ss_pred             hhheehHHHHHhCCcEeeeC----CcEEEecc-c--------eEEecCCceee------HHHHHHHhhhcccce----EE
Confidence            99999999999999999999    99999999 5        99999988766      999999999999998    99


Q ss_pred             EEecCC
Q 043831          199 TINKNG  204 (243)
Q Consensus       199 ~v~~~~  204 (243)
                      +||.++
T Consensus       121 vVd~eg  126 (305)
T 1r0v_A          121 VVDEES  126 (305)
T ss_dssp             EECTTC
T ss_pred             EEcCCC
Confidence            999876

>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A

Probab=99.77  E-value=2.4e-18  Score=155.57  Aligned_cols=125  Identities=18%  Similarity=0.245  Sum_probs=102.1

Q ss_pred             EEeCCeEEEeechh--hHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcC
Q 043831           38 VLAGYSALLAVEAE--QTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKK  115 (243)
Q Consensus        38 ~L~g~~V~v~~~~~--~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~  115 (243)
                      .+.+|.++. +...  +....++..+|++.++      .|.|+|+||+||+ .+|.|+|.    +++++++++..+    
T Consensus         4 ~~~~~~~~~-v~~~~~~~~~~~~y~~G~~~~~------~l~L~p~Ea~YLl-~rg~l~i~----~~~~~~~~~~~~----   67 (289)
T 2ohc_A            4 GICGSHVFF-IEDGKSKNYIIGKYKIGYLSGD------NLILDPYECLYLY-FKGRISFQ----NSDSFRDLFDTV----   67 (289)
T ss_dssp             EEETTEEEE-ESTTCCHHHHHHHHCCCEEETT------EEECCHHHHHHHH-HTTCEEES----STTHHHHHHHHS----
T ss_pred             CccCCeEEE-ecCCCCCceEecceeeceEcCC------EEEEcHHHHHHHH-hcCCEEEe----cCCCHHHHHHhh----
Confidence            345555544 3332  4445567789999776      8999999999999 57889985    358999998766    


Q ss_pred             CccchhhhhchhhhhcCeEeccCCcCCccEEEeeC---CCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhccccc
Q 043831          116 ETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRH---HPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVA  192 (243)
Q Consensus       116 ~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~---~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVk  192 (243)
                        |..+|.||+|||+|||+|+||   |+|| ||++   +|      |+|+|+++++.++      +.+|...       +
T Consensus        68 --~~~~y~VY~DLr~rG~~v~~~---g~dF-vyp~~g~~P------~~V~v~~e~~~i~------~~~l~~~-------~  122 (289)
T 2ohc_A           68 --TFDRYVAYEILKNKGYRVKED---SGLI-YFRKGTEKP------LSLRVMREYDRIQ------FSDLVEN-------P  122 (289)
T ss_dssp             --CHHHHHHHHHHHTTTCEEEEE---TTEE-EEESSSSCC------EEEEECCTTCEEC------HHHHHSC-------C
T ss_pred             --hhhhEeehhhHHhCCceEeeC---CccE-EeeCCCCCC------EEEEEeccCCccC------HHHHhhc-------C
Confidence              899999999999999999999   9999 9999   67      9999999988765      7777666       7


Q ss_pred             CcEEEEEEecCC
Q 043831          193 KTLLILTINKNG  204 (243)
Q Consensus       193 K~llla~v~~~~  204 (243)
                      |+ |+|+|+.++
T Consensus       123 K~-vlA~vdeeg  133 (289)
T 2ohc_A          123 VD-YYFTVDEEG  133 (289)
T ss_dssp             CS-EEEEECTTS
T ss_pred             ce-EEEEEcCCC
Confidence            88 999999887

>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}

Probab=99.71  E-value=1.7e-17  Score=131.73  Aligned_cols=88  Identities=9%  Similarity=0.161  Sum_probs=75.0

Q ss_pred             chhhhhchhhhhcCeEeccCCcCCccEEEeeCC-CCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEE
Q 043831          119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH-PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLI  197 (243)
Q Consensus       119 ~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~-P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~lll  197 (243)
                      ..+|.||+|||+|||+|+|        +||+++ |+..||+|+|+++++++.++      +.+|++.+|+|++|+|++||
T Consensus        23 ~l~y~VYkDLR~RG~~vk~--------rvY~~~~pg~~hs~ylV~vl~e~~~i~------~~~L~~~vRla~sVrK~~Vl   88 (116)
T 2zyz_A           23 VLQEQVFKDLKSRGFKIIE--------QLDDKIFIAEKKERYLFYVMVEGVEVT------IQTLLSVINMGETLSMPVVL   88 (116)
T ss_dssp             HHHHHHHHHHHTTTCEEEE--------EEETTEEEEESSSEEEEEEEETTCCBC------HHHHHHHHHHHHHHTCCEEE
T ss_pred             ceeeHHHHHHHHCCCcccE--------EEcCCCCCCCCcccEEEEEecCCCccC------HHHHHHHHHHhhccceEEEE
Confidence            4479999999999999999        899985 99999999999999988766      99999999999999999999


Q ss_pred             EEEecCCCCCCccccccceEEEEEEEeeecCCCCC
Q 043831          198 LTINKNGQGTATPSCLEQYAVEERTISRWSPEQCR  232 (243)
Q Consensus       198 a~v~~~~~~~~~p~~l~~~~V~E~~~~Rw~p~~~r  232 (243)
                      |+|+.++.            |.=..+.|+.|++|-
T Consensus        89 AiVd~dg~------------ItYy~v~~~~~~~~~  111 (116)
T 2zyz_A           89 ALVSNDGT------------VTYYYVRKIRLPRNI  111 (116)
T ss_dssp             EEECTTSC------------EEEEEEEECCCCCCT
T ss_pred             EEEcCCCC------------EEEEEEEEcccCccc
Confidence            99986552            344455666666653

>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}

Probab=99.63  E-value=7.2e-17  Score=150.80  Aligned_cols=138  Identities=14%  Similarity=0.190  Sum_probs=107.6

Q ss_pred             eEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhc
Q 043831           35 AHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAK  114 (243)
Q Consensus        35 ~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~  114 (243)
                      |...|.|++|+| .+.+...||++++||++.++      .++||++||+||++..+.+.+ +.+|..++++++.+.+.. 
T Consensus         5 ~~~~~~~~RV~v-~de~~~eL~~~GfFGrp~g~------~L~LS~~EAaYLl~~~krl~v-d~~gk~ls~eelle~~~~-   75 (395)
T 4fz2_A            5 LNINTKAKRISV-SDQSTIDILRNGYFGEYRAG------KLMLEVEEGLYLVDVRKAACT-DENSKPVSFNDIAGVFIK-   75 (395)
T ss_dssp             EEEETTTTEEEE-CCHHHHHHHHHTTCSEEETT------EEEECHHHHHHHHHHSCCEEE-CTTSCBCCHHHHHHHTTT-
T ss_pred             EeccccCCEEEE-ccHhHHHHHHcCCCCCccCC------ceEEEehhhhHHHHhCCeeee-ccCCCcCCHHHHHHHHHh-
Confidence            678889999999 55556669999999999887      799999999999965665555 568899999999887664 


Q ss_pred             CCccchhhhhchhhhhcCeEecc-CCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccC
Q 043831          115 KETFPLLYKAYSHLRKKNWVVRS-GSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAK  193 (243)
Q Consensus       115 ~~~F~~~y~VY~dLR~rG~vvks-G~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK  193 (243)
                      .+.|..+|+||+|||+|||+|++ |++||..       |   |      +..+....      +..++.....+|.++.+
T Consensus        76 ~r~f~~kylVYkDLReRG~~Vk~~g~~fGe~-------~---~------VvsEr~~~------~~~~L~e~~~~A~~~~~  133 (395)
T 4fz2_A           76 RKKLMARYFTFKDWRDRGLIIKSPGLRFGEE-------E---H------VQAKRYPS------SAINLKKYSVTGIFFPD  133 (395)
T ss_dssp             STTHHHHHHHHHHHHHTTCCEESCCSCCCCG-------G---G------SCCEECCC------CCCCCTTCCEEEEEETT
T ss_pred             chhHHHHHHHHHHHHhcCccccccccccccC-------C---c------cccccccc------chhhhhhhhhhhhcccc
Confidence            68899999999999999999998 5555422       1   1      22232222      24566667788999999


Q ss_pred             cEEEEEEecC
Q 043831          194 TLLILTINKN  203 (243)
Q Consensus       194 ~llla~v~~~  203 (243)
                      ..++++++.+
T Consensus       134 q~i~~v~DeE  143 (395)
T 4fz2_A          134 DMVTVIDDDE  143 (395)
T ss_dssp             TTEEEESCHH
T ss_pred             cceEEEeccc
Confidence            9999988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1a79a1	97	c.52.2.1 (A:83-179) Tetrameric tRNA splicing endon	4e-21
d1r0va2	91	c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuc	1e-19

>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 97

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Tetrameric tRNA splicing endonuclease, C-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 82.6 bits (204), Expect = 4e-21
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 20/115 (17%)

Query: 116 ETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLV--HSEYAVLVLAEGEDGENG 173
           E   L Y  Y  LR + ++V++G +YG DF  Y    ++   HS Y V V  E       
Sbjct: 1   ERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSS---- 56

Query: 174 RLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSP 228
              + S++   VR+   V K LLI  ++ +G             +    ++   P
Sbjct: 57  --FLLSELTGFVRVAHSVRKKLLIAIVDADGD------------IVYYNMTYVKP 97

>d1r0va2 c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 91

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Dimeric tRNA splicing endonuclease, domains 2 and 4
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 78.7 bits (194), Expect = 1e-19
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 118 FPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPS---LVHSEYAVLVLAEGEDGENGR 174
           F   Y+ Y +L+++ +VV++G ++G +F  YR   S   L HSEY V +          R
Sbjct: 2   FDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVDIADS-------R 54

Query: 175 LRVWSDIHCTVRLCGGVAKTLLI 197
                D+   VRL   V K ++ 
Sbjct: 55  EIRLIDLARAVRLAQNVRKRMVF 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1a79a1	97	Tetrameric tRNA splicing endonuclease, C-terminal	99.94
d1r0va2	91	Dimeric tRNA splicing endonuclease, domains 2 and	99.93
d1a79a2	74	Tetrameric tRNA splicing endonuclease, N-terminal	99.58
d1r0va3	75	Dimeric tRNA splicing endonuclease, domains 1 and	97.74
d1r0va1	78	Dimeric tRNA splicing endonuclease, domains 2 and	83.92

>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Tetrameric tRNA splicing endonuclease, C-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=2.6e-27  Score=180.87  Aligned_cols=83  Identities=34%  Similarity=0.547  Sum_probs=76.5

Q ss_pred             CccchhhhhchhhhhcCeEeccCCcCCccEEEeeC--CCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccC
Q 043831          116 ETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRH--HPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAK  193 (243)
Q Consensus       116 ~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~--~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK  193 (243)
                      ++|..+|.||+|||+|||+|+||+||||||+||++  +|..+||+|+|+++++++.++      |.+|++.+|+|++|+|
T Consensus         1 e~~~~ky~Vy~dLr~rG~~v~~G~kfG~df~vY~~~~~~~~~Hs~~lV~v~~~~~~~~------~~~l~~~~Rla~~vkK   74 (97)
T d1a79a1           1 ERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSSFL------LSELTGFVRVAHSVRK   74 (97)
T ss_dssp             TTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEECSSCCTTTSCCSEEEEEEETTSEEC------THHHHHHHHHHHHTTC
T ss_pred             CchhhhhHHHHHHHHCCCEEeecccCCeeEEEEecCCCCCcccccEEEEEeCCCCccC------HHHHHHhhhHhhccCc
Confidence            36889999999999999999999999999999996  456789999999999987765      9999999999999999


Q ss_pred             cEEEEEEecCC
Q 043831          194 TLLILTINKNG  204 (243)
Q Consensus       194 ~llla~v~~~~  204 (243)
                      ++|+|+|+.++
T Consensus        75 ~~ila~vd~~~   85 (97)
T d1a79a1          75 KLLIAIVDADG   85 (97)
T ss_dssp             EEEEEEECTTS
T ss_pred             EEEEEEEcCCC
Confidence            99999998766

>d1r0va2 c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Dimeric tRNA splicing endonuclease, domains 2 and 4
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=7.5e-27  Score=176.60  Aligned_cols=77  Identities=31%  Similarity=0.518  Sum_probs=69.6

Q ss_pred             ccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCC---CCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccC
Q 043831          117 TFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPS---LVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAK  193 (243)
Q Consensus       117 ~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~---~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK  193 (243)
                      +|..+|+||+|||++||+|+||+||||||++|+++|+   .+||+|+|++.+ ++++      +|.++++.+|||++|+|
T Consensus         1 ~F~~~y~vy~~lr~~G~vv~~G~KfG~df~vY~~~p~~~~~~Hs~~lV~v~~-~~~~------~~~~l~~~~Rla~~vkK   73 (91)
T d1r0va2           1 NFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVDIAD-SREI------RLIDLARAVRLAQNVRK   73 (91)
T ss_dssp             THHHHHHHHHHHHHTTCEEEECGGGTSSEEEESCCSSGGGGGGCSEEEEECT-TSCB------CHHHHHHHHHHHHHTTC
T ss_pred             ChHHHhHHHHHHHHCCCEECCCcccCccEEEEcCCCCCCccCcccEEEEcCC-CCCC------CHHHHHHhhhhhhccce
Confidence            5888999999999999999999999999999998885   679999999864 4444      49999999999999999


Q ss_pred             cEEEEEE
Q 043831          194 TLLILTI  200 (243)
Q Consensus       194 ~llla~v  200 (243)
                      ++|+|++
T Consensus        74 ~~vla~~   80 (91)
T d1r0va2          74 RMVFAYG   80 (91)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEE
Confidence            9999985

>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: MutS N-terminal domain-like
superfamily: tRNA-intron endonuclease N-terminal domain-like
family: tRNA-intron endonuclease N-terminal domain-like
domain: Tetrameric tRNA splicing endonuclease, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=2.1e-15  Score=108.88  Aligned_cols=73  Identities=21%  Similarity=0.369  Sum_probs=62.8

Q ss_pred             ceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHh
Q 043831           34 EAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKA  113 (243)
Q Consensus        34 ~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~  113 (243)
                      ++.|+|.||+|+| .+.+....+++.+||++.++      .|+|||+||+||+ ..|+|+|.+.+|+.+|+++|+++++.
T Consensus         1 kI~g~L~gdrViv-~~~~~~~~L~~~gYG~~~~~------~l~Ls~~EalYLl-~~gkl~v~~~~gk~lsfe~l~~~a~~   72 (74)
T d1a79a2           1 KITGLLDGDRVIV-FDKNGISKLSARHYGNVEGN------FLSLSLVEALYLI-NLGWLEVKYKDNKPLSFEELYEYARN   72 (74)
T ss_dssp             CEEEEEETTEEEE-CCHHHHHHHHHTTCSEECSS------CEEEEHHHHHHHH-HHTCEEEECSSSSCCCHHHHHHHHHH
T ss_pred             CceEEEeCCEEEE-cCHHHHHHHHhCcCCCCcCC------eEEEeHHHHHHHH-hcCcEEEecCCCCCCCHHHHHHHHhc
Confidence            5789999999999 66665444456679999988      8999999999999 68889998878999999999999876


Q ss_pred             c
Q 043831          114 K  114 (243)
Q Consensus       114 ~  114 (243)
                      .
T Consensus        73 ~   73 (74)
T d1a79a2          73 V   73 (74)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1r0va3 d.75.1.1 (A:140-214) Dimeric tRNA splicing endonuclease, domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: MutS N-terminal domain-like
superfamily: tRNA-intron endonuclease N-terminal domain-like
family: tRNA-intron endonuclease N-terminal domain-like
domain: Dimeric tRNA splicing endonuclease, domains 1 and 3
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.74  E-value=3.9e-05  Score=52.06  Aligned_cols=66  Identities=24%  Similarity=0.360  Sum_probs=55.2

Q ss_pred             CcceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHH
Q 043831           32 QSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYM  111 (243)
Q Consensus        32 ~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~  111 (243)
                      -+++.|+|++..|+.    .+.+++.+.+||...++      -..||++|++||+ ++|.|.+.+     -+.+|+.+.+
T Consensus         7 lpeiagvlsdeyvit----kqteifsryfygsekgd------lvtlslieslyll-dlgklnlln-----adreelvkra   70 (75)
T d1r0va3           7 LPEIAGVLSDEYVIT----KQTEIFSRYFYGSEKGD------LVTLSLIESLYLL-DLGKLNLLN-----ADREELVKRA   70 (75)
T ss_dssp             CCCEEEEEETTEEEE----SCTHHHHTTCCSEEETT------EEEECHHHHHHHH-HHTCEEETT-----CCHHHHHHHH
T ss_pred             hhHHhcccccceeee----hhhhHHHHHhccCccCC------EeehHHHHHHHHH-ccccccccc-----cCHHHHHHHH
Confidence            367889999999887    45568899999999998      7899999999999 899999864     3678888766


Q ss_pred             Hh
Q 043831          112 KA  113 (243)
Q Consensus       112 ~~  113 (243)
                      +.
T Consensus        71 re   72 (75)
T d1r0va3          71 RE   72 (75)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Dimeric tRNA splicing endonuclease, domains 2 and 4
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.92  E-value=0.15  Score=34.06  Aligned_cols=65  Identities=18%  Similarity=0.310  Sum_probs=44.2

Q ss_pred             ccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEE
Q 043831          117 TFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLL  196 (243)
Q Consensus       117 ~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~ll  196 (243)
                      +|..-|.||.|||+||--|+-    -+.|++-++       .|+  .+++...+.      +.+|....|--.    ++-
T Consensus         1 dfstyyfvyedlrdrgnkvki----qgeflltkk-------pyl--piserktir------meeiaekarnfd----elr   57 (78)
T d1r0va1           1 DFSTYYFVYEDLRDRGNKVKI----QGEFLLTKK-------PYL--PISERKTIR------MEEIAEKARNFD----ELR   57 (78)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEE----ETTEEESSS-------EEE--EEETTSCBC------HHHHHHHTTTCS----SCE
T ss_pred             CcceEEEEehhhhhcCCeeEE----EEEEEEecC-------Ccc--cccccceee------HHHHHHHhcCch----hee
Confidence            366789999999999988876    478998665       343  234444433      777776666433    455


Q ss_pred             EEEEecCC
Q 043831          197 ILTINKNG  204 (243)
Q Consensus       197 la~v~~~~  204 (243)
                      +|+|+.+.
T Consensus        58 lavvdees   65 (78)
T d1r0va1          58 LAVVDEES   65 (78)
T ss_dssp             EEEECTTC
T ss_pred             eeeecccc
Confidence            78887665