Citrus Sinensis ID: 043853

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS
Secondary Structure (PSIPRED)
cccccccccccEEccEEEEEEccccEEEEEcccEEEEcccccccccHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHccccEEEEEccHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccccccccEEEEEEEEcccccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcccEEEEEcccHHHHHHcccEEEEcccHHEcccHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHcHHHHccccEEEEEEEEcccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
mnnvntsvgntsvgeeeytlygksNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDcaglrddgseIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAklnnisnatfvqgdlnkiggdfgnafpkpdivisdpnrpgmHMKLIKFLLKlkaprivyvscnpatcardldylchgvgdqnikgcyklkslqpvdmfphtphiecvcllels
Flexible Loop (DISEMBL)
mnnvntsvgntsvgeeEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS
Low Complexity Region (SEG)
MnnvntsvgntsvgEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS
Disordered region (IsUnstruct)
****************EYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE**
Disordered Region (DISOPRED)
MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS
Disordered Region (DISEMBL)
***********SVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS
Disordered Region (DISPRO)
*NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q837V0	457	Uncharacterized RNA methy	yes	no	0.941	0.457	0.465	9e-49
Q8KGF9	483	Uncharacterized RNA methy	yes	no	0.945	0.434	0.468	3e-47
Q9KF10	458	Uncharacterized RNA methy	yes	no	0.954	0.462	0.454	1e-46
Q8AA22	454	Uncharacterized RNA methy	yes	no	0.923	0.451	0.447	1e-46
Q5HEM5	453	Uncharacterized RNA methy	yes	no	0.945	0.463	0.447	2e-44
Q8Y6D6	453	Uncharacterized RNA methy	yes	no	0.954	0.467	0.436	2e-44
Q8NVT4	453	Uncharacterized RNA methy	yes	no	0.945	0.463	0.447	3e-44
Q6G836	453	Uncharacterized RNA methy	yes	no	0.945	0.463	0.447	3e-44
Q71YR7	453	Uncharacterized RNA methy	yes	no	0.954	0.467	0.436	4e-44
Q99SY9	453	Uncharacterized RNA methy	yes	no	0.941	0.461	0.445	6e-44

>sp|Q837V0|Y728_ENTFA Uncharacterized RNA methyltransferase EF_0728 OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=EF_0728 PE=3 SV=1

 Score =  193 bits (490), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           + NVN    N   G+E   L+G   IT+T+  L F+ISA SF+Q N  Q EV+Y+ +++ 
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           A L   G+EIV+D +CG GTIGLTLA+  K VYG EV+ +A+ DA  NAKLNNI NATF 
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
            G   ++         +PD+V+ DP R G+  +L+  L++ +  RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
             L         +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452

Enterococcus faecalis (strain ATCC 700802 / V583) (taxid: 226185)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT0009 PE=3 SV=1

 Score =  188 bits (477), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/222 (46%), Positives = 128/222 (57%), Gaps = 12/222 (5%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           +NNV T     + GE+EY + G   +TE L  L F+ISANSFFQTNT QAE LY  I   
Sbjct: 269 LNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRISANSFFQTNTRQAETLYDQIIAV 328

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
            G+  +  + V DL+CGTGTI L LAR  K   G EVV  A+ DA  NA+LN +SN  F 
Sbjct: 329 GGITPE--DTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTVFF 386

Query: 121 QGDLNKIGG--DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
           Q DL       +    + KP I+++DP R GMH K +  +LKL+  RIVYVSCNP   AR
Sbjct: 387 QADLKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNLAR 446

Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
           D        G +     Y++ S QPVDMFP T HIE V   E
Sbjct: 447 D--------GKEIAARGYRMTSAQPVDMFPQTNHIETVACFE 480

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0687 PE=3 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 132/222 (59%), Gaps = 10/222 (4%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           + NVN    N   G++   L+G+  I +T+  + F ISA SF+Q N  Q +VLY    + 
Sbjct: 246 VQNVNPKRTNVIFGDKTKVLWGEEYIYDTIGDIKFAISARSFYQVNPEQTKVLYDQALEF 305

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           A L   GSE V+D +CG GTI L LA+  KHVYG E+VP+AISDA RNA+LN  +N  F 
Sbjct: 306 ANL--TGSETVIDAYCGIGTISLFLAQQAKHVYGVEIVPEAISDAKRNARLNGFANVQFA 363

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
            GD  K+   +     + D+++ DP R G    L+K +L +K  R+VYVSCNPAT ARDL
Sbjct: 364 VGDAEKVMPWWYAQGVRADVIVVDPPRKGCDEALLKTILNMKPDRVVYVSCNPATLARDL 423

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
             L          G Y+ K +QPVDMFP T HIE V +LEL 
Sbjct: 424 RVLE--------DGGYETKDVQPVDMFPWTTHIESVAVLELK 457

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8AA22|Y643_BACTN Uncharacterized RNA methyltransferase BT_0643 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=BT_0643 PE=3 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 137/221 (61%), Gaps = 16/221 (7%)

Query: 2   NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
           N  N ++ +  V    +   GK ++ E + GL F++   SF+QTN+ QA  LYK+  + A
Sbjct: 248 NKCNDTINDLDV----HVFKGKDHMFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIAREFA 303

Query: 62  GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
           GL   G E+V DL+ GTGTI   ++R  + V G E VP+AI DA  NA++N I NA F  
Sbjct: 304 GL--TGKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKNALFYA 361

Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           GD+ + +  +F N   +PD++I+DP R GMH  ++  +L  +  RIVYVSCNPAT ARDL
Sbjct: 362 GDMKDMLTQEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 421

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
                    Q + G YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 422 ---------QLLDGKYKVKAVQPVDMFPHTHHVENVVLLEL 453

Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5HEM5|Y1957_STAAC Uncharacterized RNA methyltransferase SACOL1957 OS=Staphylococcus aureus (strain COL) GN=SACOL1957 PE=3 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)

Query: 2   NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
            N+N S  N  +G +  TLYGK  I + L   TF+IS  SF+Q N+ Q E LY    + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303

Query: 62  GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
            L   G+E+VLD +CG GTIGL +A   KHVYG EVVP AI DA +NA +N  +N TFV 
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361

Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
           G   ++   +     KPD+V+ DP R G     I+ LL L+  RIVY+SCNPAT  RD  
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421

Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
            L            Y+L+ + PVDMFP T H+E V L  L 
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453

Staphylococcus aureus (strain COL) (taxid: 93062)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8Y6D6|Y1751_LISMO Uncharacterized RNA methyltransferase lmo1751 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo1751 PE=3 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           + N+N    N   G+   TL+GK  I +T+ G+ F ISA SF+Q N  Q EVLY+   D 
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           A L   G E V+D +CG G+I L LA+  KHVYG E+V QAI DA  NA+LN ++N TF 
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
            G   ++   +  A    D+++ DP R G   KL++ +L +K  ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPSWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
             L          G Y  K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8NVT4|Y1838_STAAW Uncharacterized RNA methyltransferase MW1838 OS=Staphylococcus aureus (strain MW2) GN=MW1838 PE=3 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)

Query: 2   NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
            N+N S  N  +G +  TLYGK  I + L   TF+IS  SF+Q N+ Q E LY    + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303

Query: 62  GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
            L   G+E+VLD +CG GTIGL +A   KHVYG EVVP AI DA +NA +N  +N TFV 
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361

Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
           G   ++   +     KPD+V+ DP R G     I+ LL L+  RIVY+SCNPAT  RD  
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421

Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
            L            Y+L+ + PVDMFP T H+E V L  L 
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6G836|Y1819_STAAS Uncharacterized RNA methyltransferase SAS1819 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1819 PE=3 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)

Query: 2   NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
            N+N S  N  +G +  TLYGK  I + L   TF+IS  SF+Q N+ Q E LY    + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303

Query: 62  GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
            L   G+E+VLD +CG GTIGL +A   KHVYG EVVP AI DA +NA +N  +N TFV 
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361

Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
           G   ++   +     KPD+V+ DP R G     I+ LL L+  RIVY+SCNPAT  RD  
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421

Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
            L            Y+L+ + PVDMFP T H+E V L  L 
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q71YR7|Y1776_LISMF Uncharacterized RNA methyltransferase LMOf2365_1776 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_1776 PE=3 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           + N+N    N   G+   TL+GK  I +T+ G+ F ISA SF+Q N  Q EVLY+   D 
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDA 301

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           A L   G E V+D +CG G+I L LA+  KHVYG E+V QAI DA  NA+LN ++N TF 
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
            G   ++   +  A    D+++ DP R G   KL++ +L +K  ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
             L          G Y  K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q99SY9|Y1897_STAAM Uncharacterized RNA methyltransferase SAV1897 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1897 PE=1 SV=1

 Score =  177 bits (448), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/220 (44%), Positives = 126/220 (57%), Gaps = 11/220 (5%)

Query: 3   NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
           N+N S  N  +G +  TLYGK  I + L   TF+IS  SF+Q N+ Q E LY    + A 
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
           L   G+E+VLD +CG GTIGL +A   KHVYG EVVP +I DA +NA +N  +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCG 362

Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
              ++   +     KPD+V+ DP R G     I+ LL L+  RIVY+SCNPAT  RD   
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422

Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
           L            Y+L+ + PVDMFP T H+E V L  L 
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453

Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
357454725	560	23S rRNA (uracil-5-)-methyltransferase r	0.995	0.394	0.877	1e-111
356547359	533	PREDICTED: uncharacterized RNA methyltra	1.0	0.416	0.869	1e-110
449447830	562	PREDICTED: uncharacterized RNA methyltra	1.0	0.395	0.846	1e-110
255549690	577	RNA m5u methyltransferase, putative [Ric	0.995	0.383	0.909	1e-108
218187673	624	hypothetical protein OsI_00745 [Oryza sa	0.995	0.354	0.828	1e-107
222617909	558	hypothetical protein OsJ_00721 [Oryza sa	0.995	0.396	0.828	1e-106
115435048	557	Os01g0193600 [Oryza sativa Japonica Grou	0.995	0.396	0.828	1e-106
242051741	558	hypothetical protein SORBIDRAFT_03g00301	0.995	0.396	0.832	1e-105
225442369	570	PREDICTED: uncharacterized RNA methyltra	0.995	0.387	0.877	1e-105
19310570	564	unknown protein [Arabidopsis thaliana]	1.0	0.393	0.860	1e-105

>gi|357454725|ref|XP_003597643.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula] gi|355486691|gb|AES67894.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/221 (87%), Positives = 207/221 (93%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           MNNVNTSVGNTSVGEEEYTL+GKS+ITETLRGLTFQISANSFFQTNTHQAEVLYKLIE+C
Sbjct: 339 MNNVNTSVGNTSVGEEEYTLHGKSSITETLRGLTFQISANSFFQTNTHQAEVLYKLIEEC 398

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AG+R DGSE+VLDLFCGTGTIGLTLAR VKHVYGYEVVPQAI+DA  NAK+N I NATF+
Sbjct: 399 AGIRGDGSEVVLDLFCGTGTIGLTLARSVKHVYGYEVVPQAIADARLNAKINGIQNATFI 458

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           +GDLNKI  +FG  FPKPDIVISDPNRPGMHMKLIKFLL L+APRIVYVSCNPATCARDL
Sbjct: 459 EGDLNKIDANFGKNFPKPDIVISDPNRPGMHMKLIKFLLNLRAPRIVYVSCNPATCARDL 518

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
           DYLCHGV + NI+GCYKL SLQPVDMFPHTPHIECVCLLEL
Sbjct: 519 DYLCHGVAELNIEGCYKLISLQPVDMFPHTPHIECVCLLEL 559

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547359|ref|XP_003542081.1| PREDICTED: uncharacterized RNA methyltransferase CT0009-like [Glycine max]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/222 (86%), Positives = 207/222 (93%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           +NNVNTSVGNTSVGEEEYTLYGKS+ITETLRGLTFQISANSFFQTNT+QAEVLYKLIEDC
Sbjct: 312 INNVNTSVGNTSVGEEEYTLYGKSSITETLRGLTFQISANSFFQTNTYQAEVLYKLIEDC 371

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AG++ D SEIVLDLFCGTGTIGLTLAR V+HVYGYEVVPQAI+DA  NAK+N I NATFV
Sbjct: 372 AGVKGDDSEIVLDLFCGTGTIGLTLARSVRHVYGYEVVPQAITDARLNAKINGIQNATFV 431

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           QGDLNKI  +FG  FPKPDIVISDPNRPGMH+KLIKFLL L+APRIVYVSCNPATCARDL
Sbjct: 432 QGDLNKIDENFGKNFPKPDIVISDPNRPGMHIKLIKFLLNLRAPRIVYVSCNPATCARDL 491

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
           DYLCHGV ++NI+GCYKL SLQPVDMFPHTPHIECVCLLEL 
Sbjct: 492 DYLCHGVEEKNIEGCYKLISLQPVDMFPHTPHIECVCLLELQ 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447830|ref|XP_004141670.1| PREDICTED: uncharacterized RNA methyltransferase BT_0643-like [Cucumis sativus] gi|449480609|ref|XP_004155944.1| PREDICTED: uncharacterized RNA methyltransferase BT_0643-like [Cucumis sativus]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/222 (84%), Positives = 207/222 (93%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           +NN+N+SVGNTSVGEEE+ LYGKS+I E+LRGLTFQISANSFFQTNTHQAEVLY+LIE+C
Sbjct: 334 VNNINSSVGNTSVGEEEHVLYGKSSIRESLRGLTFQISANSFFQTNTHQAEVLYRLIEEC 393

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AGL+ DGSEIVLDLFCGTGTIGLTLA+  +HVYGYEVVPQAI DAC NA+LN+I NATFV
Sbjct: 394 AGLKGDGSEIVLDLFCGTGTIGLTLAKRARHVYGYEVVPQAIKDACLNAELNSICNATFV 453

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           QGDLNKI  +FGN FPKPDI+ISDPNRPGMHMKLIKFLLK+K PRIVYVSCNPATCARDL
Sbjct: 454 QGDLNKIDQNFGNNFPKPDIIISDPNRPGMHMKLIKFLLKIKTPRIVYVSCNPATCARDL 513

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
           DYLCHGV ++ IKGCY LKSLQPVDMFPHTPHIECVCLLEL+
Sbjct: 514 DYLCHGVVEEGIKGCYTLKSLQPVDMFPHTPHIECVCLLELT 555

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549690|ref|XP_002515896.1| RNA m5u methyltransferase, putative [Ricinus communis] gi|223544801|gb|EEF46316.1| RNA m5u methyltransferase, putative [Ricinus communis]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/221 (90%), Positives = 207/221 (93%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           +NNVN+SVGNTSVGEEEYT+YGKS ITE LRGLTFQISANSFFQTNT QAEVLYKLIEDC
Sbjct: 356 VNNVNSSVGNTSVGEEEYTIYGKSTITEILRGLTFQISANSFFQTNTRQAEVLYKLIEDC 415

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AGLR DGSEIVLDLFCGTGTIGLTLA   KHVYGYEVVPQAISDA RNA+LN I+NATFV
Sbjct: 416 AGLRGDGSEIVLDLFCGTGTIGLTLAGRAKHVYGYEVVPQAISDARRNAELNGITNATFV 475

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           QGDLNKI   FGN FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL
Sbjct: 476 QGDLNKISDSFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 535

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
           DYLCHGV +QNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL
Sbjct: 536 DYLCHGVEEQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218187673|gb|EEC70100.1| hypothetical protein OsI_00745 [Oryza sativa Indica Group]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/221 (82%), Positives = 203/221 (91%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           MNNVNTSVGNTSVGEEEYTLYGK  ITE LRGLTFQISANSFFQTNT QA+VLYKLI + 
Sbjct: 403 MNNVNTSVGNTSVGEEEYTLYGKPTITEMLRGLTFQISANSFFQTNTKQADVLYKLIGES 462

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AGL+ DGSEI+LDLFCGTGTIGLTLAR  KHVYGYEVVP+AI+DA +NAKLN ISNATFV
Sbjct: 463 AGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFV 522

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           QGDLNKI   FG  FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 523 QGDLNKINETFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 582

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
           DYLCHGV ++++KGCY+LK++ PVDMFPHTPHIEC+C+LEL
Sbjct: 583 DYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVLEL 623

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617909|gb|EEE54041.1| hypothetical protein OsJ_00721 [Oryza sativa Japonica Group]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/221 (82%), Positives = 203/221 (91%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           MNNVNTSVGNTSVGEEEYTLYGK  ITE LRGLTFQISANSFFQTNT QA+VLYKLI + 
Sbjct: 337 MNNVNTSVGNTSVGEEEYTLYGKPTITEMLRGLTFQISANSFFQTNTKQADVLYKLIGES 396

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AGL+ DGSEI+LDLFCGTGTIGLTLAR  KHVYGYEVVP+AI+DA +NAKLN ISNATFV
Sbjct: 397 AGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFV 456

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           QGDLNKI   FG  FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 457 QGDLNKINETFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 516

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
           DYLCHGV ++++KGCY+LK++ PVDMFPHTPHIEC+C+LEL
Sbjct: 517 DYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVLEL 557

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115435048|ref|NP_001042282.1| Os01g0193600 [Oryza sativa Japonica Group] gi|9988445|dbj|BAB12711.1| putative RNA methyltransferase [Oryza sativa Japonica Group] gi|10934074|dbj|BAB16852.1| putative RNA methyltransferase [Oryza sativa Japonica Group] gi|113531813|dbj|BAF04196.1| Os01g0193600 [Oryza sativa Japonica Group] gi|215697095|dbj|BAG91089.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/221 (82%), Positives = 203/221 (91%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           MNNVNTSVGNTSVGEEEYTLYGK  ITE LRGLTFQISANSFFQTNT QA+VLYKLI + 
Sbjct: 336 MNNVNTSVGNTSVGEEEYTLYGKPTITEMLRGLTFQISANSFFQTNTKQADVLYKLIGES 395

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AGL+ DGSEI+LDLFCGTGTIGLTLAR  KHVYGYEVVP+AI+DA +NAKLN ISNATFV
Sbjct: 396 AGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFV 455

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           QGDLNKI   FG  FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 456 QGDLNKINETFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 515

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
           DYLCHGV ++++KGCY+LK++ PVDMFPHTPHIEC+C+LEL
Sbjct: 516 DYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVLEL 556

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051741|ref|XP_002455016.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor] gi|241926991|gb|EES00136.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/221 (83%), Positives = 202/221 (91%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           +NNVN+SVGNTSVGE+EYTLYGK NITE LRGLTFQISANSFFQTNT QA+VLYKLIED 
Sbjct: 337 INNVNSSVGNTSVGEQEYTLYGKPNITEMLRGLTFQISANSFFQTNTKQADVLYKLIEDS 396

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AGL+ DGSEIVLDLFCGTGTIGLTLAR  KHVYGYEVVP+AI+DA +NAKLN I NATFV
Sbjct: 397 AGLKGDGSEIVLDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADARKNAKLNGIDNATFV 456

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           QGDLNKI   FG  FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 457 QGDLNKINESFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 516

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
           DYLCHGV +++++G Y LKS+ PVDMFPHTPHIECVCLLEL
Sbjct: 517 DYLCHGVEEKDLRGFYDLKSVIPVDMFPHTPHIECVCLLEL 557

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442369|ref|XP_002276511.1| PREDICTED: uncharacterized RNA methyltransferase CT0009 [Vitis vinifera] gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/221 (87%), Positives = 208/221 (94%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           +NN+NTSVG+TSVGE+EY L+GKS ITE LRGLTFQISANSFFQTNTHQAEVLYKLIEDC
Sbjct: 349 VNNINTSVGSTSVGEQEYILHGKSAITEILRGLTFQISANSFFQTNTHQAEVLYKLIEDC 408

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AGLR DGSEIVLDLFCGTGTIGLTL+R V+HVYGYEVV QA+SDA RNAKLN I NATF+
Sbjct: 409 AGLRGDGSEIVLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAVSDARRNAKLNGICNATFI 468

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           +GDLNKIG +FG  FPKPD+VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL
Sbjct: 469 EGDLNKIGENFGKDFPKPDVVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 528

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
           DYLCHGV +QNI+GCYKLKSLQPVDMFPHTPHIECVCLLEL
Sbjct: 529 DYLCHGVVEQNIEGCYKLKSLQPVDMFPHTPHIECVCLLEL 569

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19310570|gb|AAL85018.1| unknown protein [Arabidopsis thaliana]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/222 (86%), Positives = 208/222 (93%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           MNNVN+SVGNTSVGE+EYTLYGK  ITE LRGLTFQISANSFFQTNTHQAEVLYKLIE+ 
Sbjct: 343 MNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEES 402

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           AGL+ DGSE+VLDLFCGTGTIGLTLAR  KHVYGYEVVPQAI+DA +NA++N I NATF+
Sbjct: 403 AGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFI 462

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
           QGDLNKIG DFGN FPKPDIVISDPNRPGMHMKLIKFLLKLK+PRI+YVSCNPATCARDL
Sbjct: 463 QGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDL 522

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
           DYLCHGV ++N+KGCYKL S+QPVDMFPHTPHIECVCLLEL+
Sbjct: 523 DYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLLELA 564

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2094776	554	AT3G21300 [Arabidopsis thalian	0.936	0.375	0.855	1.5e-97
TIGR_CMR|BA_0333	458	BA_0333 "RNA methyltransferase	0.864	0.419	0.450	3.9e-37
UNIPROTKB|O31503	459	rlmCD "23S rRNA (uracil-C(5))-	0.882	0.427	0.422	3.5e-36
TIGR_CMR|BA_0426	459	BA_0426 "RNA methyltransferase	0.882	0.427	0.405	1.1e-34
TIGR_CMR|GSU_1452	495	GSU_1452 "RNA methyltransferas	0.878	0.393	0.404	1.1e-32
UNIPROTKB|Q8IZ69	625	TRMT2A "tRNA (uracil-5-)-methy	0.882	0.313	0.435	9.9e-32
UNIPROTKB|F1M569	614	Trmt2a "Protein Trmt2a" [Rattu	0.878	0.317	0.413	1.9e-30
RGD|1310418	615	Trmt2a "tRNA methyltransferase	0.878	0.317	0.413	1.9e-30
UNIPROTKB|D4A993	627	Trmt2a "Protein Trmt2a" [Rattu	0.878	0.311	0.413	2.1e-30
ZFIN|ZDB-GENE-030131-6876	619	trmt2a "trm2 tRNA methyltransf	0.882	0.316	0.396	4.2e-30

TAIR|locus:2094776 AT3G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 178/208 (85%), Positives = 194/208 (93%)

Query:    15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
             E+EYTLYGK  ITE LRGLTFQISANSFFQTNTHQAEVLYKLIE+ AGL+ DGSE+VLDL
Sbjct:   347 EKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEESAGLKGDGSEVVLDL 406

Query:    75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
             FCGTGTIGLTLAR  KHVYGYEVVPQAI+DA +NA++N I NATF+QGDLNKIG DFGN 
Sbjct:   407 FCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFGNN 466

Query:   135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
             FPKPDIVISDPNRPGMHMKLIKFLLKLK+PRI+YVSCNPATCARDLDYLCHGV ++N+KG
Sbjct:   467 FPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKG 526

Query:   195 CYKLKSLQPVDMFPHTPHIECVCLLELS 222
             CYKL S+QPVDMFPHTPHIECVCLLEL+
Sbjct:   527 CYKLMSVQPVDMFPHTPHIECVCLLELA 554

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA

GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS

TIGR_CMR|BA_0333 BA_0333 "RNA methyltransferase, TrmA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 91/202 (45%), Positives = 120/202 (59%)

Query:    20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
             LYG   I + +  + F ISA SF+Q N  Q +VLY    + A L  DG+E V+D +CG G
Sbjct:   266 LYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKL--DGNETVIDAYCGIG 323

Query:    80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139
             +I L LA+  K VYG E+VP+AI DA RNA LNN++NA F  G+   +   +       D
Sbjct:   324 SISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKEGVIAD 383

Query:   140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK 199
              ++ DP R G    L+  ++ +K  R+VYVSCNPAT ARDL  L  G G       YK +
Sbjct:   384 TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG-G-------YKTQ 435

Query:   200 SLQPVDMFPHTPHIECVCLLEL 221
              +Q VDMFPHT H+ECV  L+L
Sbjct:   436 EVQLVDMFPHTTHVECVAWLKL 457

GO:0008175 "tRNA methyltransferase activity" evidence=ISS

GO:0009451 "RNA modification" evidence=ISS

UNIPROTKB|O31503 rlmCD "23S rRNA (uracil-C(5))-methyltransferase RlmCD" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 87/206 (42%), Positives = 121/206 (58%)

Query:    16 EEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLF 75
             E   ++G+  I + +  + F ISA SF+Q N  Q +VLY    + A L+  G E V+D +
Sbjct:   262 ETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEYAELQ--GEETVIDAY 319

Query:    76 CGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF 135
             CG GTI L LA+  K VYG E+VP+AI DA RNA+LN  +NA F  G+   +   +    
Sbjct:   320 CGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVIPKWYEEG 379

Query:   136 PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGC 195
                D ++ DP R G    L++ ++++K  R+VYVSCNP T ARDL  L  G G       
Sbjct:   380 ITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDG-G------- 431

Query:   196 YKLKSLQPVDMFPHTPHIECVCLLEL 221
             Y  + +QPVDMFPHT H+EC  L++L
Sbjct:   432 YVTREVQPVDMFPHTNHVECCVLIKL 457

GO:0031167 "rRNA methylation" evidence=IDA

GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity" evidence=IDA

TIGR_CMR|BA_0426 BA_0426 "RNA methyltransferase, TrmA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 84/207 (40%), Positives = 125/207 (60%)

Query:    15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
             ++ + L GK  I ETL  L+F++SA +FFQ N  Q  VLY   +  A L   G+E ++D 
Sbjct:   263 DKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALT--GNEKIVDA 320

Query:    75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
             +CG GTIGL LA     V G +V+P+AI+DA +NAK +  +N  +  G   +    +   
Sbjct:   321 YCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE 380

Query:   135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
               +PD+++ DP R G   KL++ +LK+K  ++VYVSCNP++ ARD+  L        +K 
Sbjct:   381 GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQAL--------MKS 432

Query:   195 CYKLKSLQPVDMFPHTPHIECVCLLEL 221
              Y+++ +QPVDMFPHT H+E V  L L
Sbjct:   433 -YEVEYVQPVDMFPHTAHVENVVKLTL 458

GO:0006400 "tRNA modification" evidence=ISS

GO:0008175 "tRNA methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_1452 GSU_1452 "RNA methyltransferase, TrmA family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 83/205 (40%), Positives = 116/205 (56%)

Query:    15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
             + +Y L  +  +TE L G+ F IS  SFFQ N+  A ++Y+ +   + L   G E V+DL
Sbjct:   270 QRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLT--GKESVVDL 327

Query:    75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
             +CG G I L LA   + V+G EVV  A++DA  NA+LN I N +F  GD  ++  +    
Sbjct:   328 YCGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEE 387

Query:   135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
               + D+V+ +P R G    ++  +      RIVYVSC PAT ARDLD L  G+G      
Sbjct:   388 GERLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILA-GLG------ 440

Query:   195 CYKLKSLQPVDMFPHTPHIECVCLL 219
              Y    +QPVDMFP TPH+E + LL
Sbjct:   441 -YATLRVQPVDMFPQTPHVENIALL 464

GO:0001510 "RNA methylation" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0008175 "tRNA methyltransferase activity" evidence=ISS

UNIPROTKB|Q8IZ69 TRMT2A "tRNA (uracil-5-)-methyltransferase homolog A" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 9.9e-32, P = 9.9e-32
 Identities = 88/202 (43%), Positives = 117/202 (57%)

Query:    22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
             G   I E L GLTF+IS ++FFQ NT  AEVLY +I+D A L D GS +VLD+ CGTGTI
Sbjct:   389 GDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQL-DAGS-MVLDVCCGTGTI 446

Query:    82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
             GL LAR VK V G E+ P+A+ DA  NA+ N +SN  F  G    +     +      +V
Sbjct:   447 GLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLVSRLASQHLV 506

Query:   142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKL 198
              I DP R G+H K+I  + + K   R++YVSCNP     +   LC    ++ +KG  ++ 
Sbjct:   507 AILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGIPFRP 565

Query:   199 KSLQPVDMFPHTPHIECVCLLE 220
                  VD+FP TPH E + L E
Sbjct:   566 VKAVAVDLFPQTPHCEMLILFE 587

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0008173 "RNA methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1M569 Trmt2a "Protein Trmt2a" [Rattus norvegicus (taxid:10116)]

 Score = 342 (125.4 bits), Expect = 1.9e-30, P = 1.9e-30
 Identities = 84/203 (41%), Positives = 115/203 (56%)

Query:    22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
             G   I E L GLTF+IS ++FFQ NT  AEVLY +I++ A L  DG   VLD+ CGTGTI
Sbjct:   379 GDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL--DGGSTVLDVCCGTGTI 436

Query:    82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
             GL LA  VK V G E+  +A+ DA  NA  N +SN  F  G    +     +      +V
Sbjct:   437 GLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPGLVSKLSSQQLV 496

Query:   142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC--YK 197
              + DP R G+H K+I  + K +   R++YVSCNP     +   LC    ++ +KG   + 
Sbjct:   497 AVLDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFHP 555

Query:   198 LKSLQPVDMFPHTPHIECVCLLE 220
             +K++  VD+FP TPH E + L E
Sbjct:   556 VKAVA-VDLFPQTPHCEMLILFE 577

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0008173 "RNA methyltransferase activity" evidence=IEA

RGD|1310418 Trmt2a "tRNA methyltransferase 2 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 342 (125.4 bits), Expect = 1.9e-30, P = 1.9e-30
 Identities = 84/203 (41%), Positives = 115/203 (56%)

Query:    22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
             G   I E L GLTF+IS ++FFQ NT  AEVLY +I++ A L  DG   VLD+ CGTGTI
Sbjct:   380 GDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL--DGGSTVLDVCCGTGTI 437

Query:    82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
             GL LA  VK V G E+  +A+ DA  NA  N +SN  F  G    +     +      +V
Sbjct:   438 GLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPGLVSKLSSQQLV 497

Query:   142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC--YK 197
              + DP R G+H K+I  + K +   R++YVSCNP     +   LC    ++ +KG   + 
Sbjct:   498 AVLDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFHP 556

Query:   198 LKSLQPVDMFPHTPHIECVCLLE 220
             +K++  VD+FP TPH E + L E
Sbjct:   557 VKAVA-VDLFPQTPHCEMLILFE 578

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0008173 "RNA methyltransferase activity" evidence=IEA

UNIPROTKB|D4A993 Trmt2a "Protein Trmt2a" [Rattus norvegicus (taxid:10116)]

 Score = 342 (125.4 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 84/203 (41%), Positives = 115/203 (56%)

Query:    22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
             G   I E L GLTF+IS ++FFQ NT  AEVLY +I++ A L  DG   VLD+ CGTGTI
Sbjct:   380 GDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL--DGGSTVLDVCCGTGTI 437

Query:    82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
             GL LA  VK V G E+  +A+ DA  NA  N +SN  F  G    +     +      +V
Sbjct:   438 GLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPGLVSKLSSQQLV 497

Query:   142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC--YK 197
              + DP R G+H K+I  + K +   R++YVSCNP     +   LC    ++ +KG   + 
Sbjct:   498 AVLDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFHP 556

Query:   198 LKSLQPVDMFPHTPHIECVCLLE 220
             +K++  VD+FP TPH E + L E
Sbjct:   557 VKAVA-VDLFPQTPHCEMLILFE 578

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0008173 "RNA methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-6876 trmt2a "trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 4.2e-30, P = 4.2e-30
 Identities = 80/202 (39%), Positives = 114/202 (56%)

Query:    22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
             G+  I E L GL F+IS +SFFQTNT  AE+LY  + + A L  D +  VLD+ CGTGTI
Sbjct:   411 GEEWIHEELLGLKFRISPHSFFQTNTPAAEILYSAVGEWAQLDQDST--VLDVCCGTGTI 468

Query:    82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
             G++LA+ VK V G E+  +A+ DA  NAK N ++N  F  G    +     NA   P++ 
Sbjct:   469 GISLAKRVKKVIGIELCQEAVKDAEANAKANGLTNVEFHCGKAEDVFPTILNAVVSPNVT 528

Query:   142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKL 198
              I DP R G+H K+I  + K +   R+VYV+CN      +   LC    ++ ++G  ++ 
Sbjct:   529 AIVDPPRAGLHSKVILAIRKAEHLKRLVYVACNAKAAMNNFIDLCRAPSNR-VRGAAFRP 587

Query:   199 KSLQPVDMFPHTPHIECVCLLE 220
                  VD+FP T H E + L E
Sbjct:   588 VKAMAVDLFPQTMHCETILLFE 609

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008173 "RNA methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.119.48.1	annotation not avaliable (488 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00131002	hypothetical protein (428 aa)				•			•		0.623
	gw1.XVI.3177.1	hypothetical protein (66 aa)	•						•		0.586
	gw1.XVIII.1253.1	annotation not avaliable (470 aa)		•							0.481
	gw1.V.5360.1	hypothetical protein (363 aa)	•								0.467
	gw1.2059.8.1	Predicted protein (274 aa)	•								0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	2e-74
TIGR00479	431	TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf	1e-61
PRK03522	315	PRK03522, rumB, 23S rRNA methyluridine methyltrans	3e-37
PRK13168	443	PRK13168, rumA, 23S rRNA m(5)U1939 methyltransfera	6e-36
TIGR02085	374	TIGR02085, meth_trns_rumB, 23S rRNA (uracil-5-)-me	5e-29
PRK05031	362	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransfe	5e-22
pfam05958	353	pfam05958, tRNA_U5-meth_tr, tRNA (Uracil-5-)-methy	5e-18
TIGR02143	353	TIGR02143, trmA_only, tRNA (uracil-5-)-methyltrans	5e-18
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-13
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	9e-13
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	2e-11
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	2e-10
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-09
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	4e-09
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-08
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	3e-08
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	3e-07
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	3e-07
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	5e-07
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	3e-06
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	3e-06
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	3e-06
TIGR00536	284	TIGR00536, hemK_fam, HemK family putative methylas	2e-05
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	2e-05
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	5e-05
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	2e-04
PRK06202	232	PRK06202, PRK06202, hypothetical protein; Provisio	2e-04
pfam01170	172	pfam01170, UPF0020, Putative RNA methylase family	3e-04
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	3e-04
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	4e-04
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	6e-04
COG1867	380	COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyl	7e-04
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	0.001
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	0.001
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	0.001
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	0.002
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	0.002
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	0.004

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score =  231 bits (590), Expect = 2e-74
 Identities = 98/218 (44%), Positives = 125/218 (57%), Gaps = 20/218 (9%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
           + N+N +  N   G+EE TLYG  +I E   G++FQIS  SFFQ N   AE LY+   + 
Sbjct: 232 VQNINRAKTNVIEGDEEITLYGLESIRE---GVSFQISPRSFFQVNPAVAEKLYETALEW 288

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
             L   G E VLDL+CG GT GL LA+ VK V+G E+ P+A+  A  NA  N I N  F+
Sbjct: 289 LELA--GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFI 346

Query: 121 QGDLNKIGGDF---GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCA 177
            GD  +    F        KPD+V+ DP R G   +++K L KLK  RIVYVSCNPAT A
Sbjct: 347 AGDAEE----FTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLA 402

Query: 178 RDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 215
           RDL  L            Y+++ +QP DMFPHT H+E 
Sbjct: 403 RDLAILA--------STGYEIERVQPFDMFPHTHHVEA 432

Length = 432

>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA

 Score =  198 bits (505), Expect = 1e-61
 Identities = 88/212 (41%), Positives = 123/212 (58%), Gaps = 10/212 (4%)

Query: 3   NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
           N+N    N   GEE   + G+  I E    L+F +SA  FFQ N+ Q E L     +   
Sbjct: 230 NINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALE 289

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
           L+  G E+V+D +CG GT  L LA+  K V G EVVP+++  A +NA+LN I+N  F+ G
Sbjct: 290 LQ--GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAG 347

Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
            L  +      A   PD+++ DP R G   ++++ +++LK  RIVYVSCNPAT ARDL++
Sbjct: 348 TLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEF 407

Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 214
           LC        K  Y +  +QPVDMFPHT H+E
Sbjct: 408 LC--------KEGYGITWVQPVDMFPHTAHVE 431

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431

>gnl|CDD|235128 PRK03522, rumB, 23S rRNA methyluridine methyltransferase; Reviewed

 Score =  131 bits (332), Expect = 3e-37
 Identities = 68/212 (32%), Positives = 97/212 (45%), Gaps = 25/212 (11%)

Query: 14  GEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLD 73
           GEEE  L  +  + E   G+   I   SFFQTN   A  LY    D    R+     + D
Sbjct: 122 GEEEIFLTEQQALPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWV--RELPPRSMWD 179

Query: 74  LFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133
           LFCG G  GL  A     + G E+  +AI+ A ++A    ++N  F   D          
Sbjct: 180 LFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALD--------ST 231

Query: 134 AFP-----KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVG 188
            F       PD+V+ +P R G+  +L  +L ++    I+Y SCN  T A+DL +L     
Sbjct: 232 QFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHLPG--- 288

Query: 189 DQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
                  Y+++ +Q  DMFPHT H E + LL 
Sbjct: 289 -------YRIERVQLFDMFPHTAHYEVLTLLV 313

Length = 315

>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed

 Score =  130 bits (330), Expect = 6e-36
 Identities = 64/160 (40%), Positives = 82/160 (51%), Gaps = 21/160 (13%)

Query: 69  EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
           + VLDLFCG G   L LAR    V G E V   +  A  NA+ N + N TF   +L +  
Sbjct: 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE-- 356

Query: 129 GDFGNA------FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
            DF +       F K   V+ DP R G   ++++ L KL   RIVYVSCNPAT ARD   
Sbjct: 357 -DFTDQPWALGGFDK---VLLDPPRAGA-AEVMQALAKLGPKRIVYVSCNPATLARDAGV 411

Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
           L        ++  Y+LK    +DMFPHT H+E + L E  
Sbjct: 412 L--------VEAGYRLKRAGMLDMFPHTGHVESMALFERG 443

Length = 443

>gnl|CDD|131140 TIGR02085, meth_trns_rumB, 23S rRNA (uracil-5-)-methyltransferase RumB

 Score =  111 bits (279), Expect = 5e-29
 Identities = 69/213 (32%), Positives = 102/213 (47%), Gaps = 25/213 (11%)

Query: 14  GEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEI--- 70
           GEEE  L  +  + E    +   I   SFFQTN   A  LY      A  R    EI   
Sbjct: 182 GEEEIFLTEQQALPERFNDVPLVIRPQSFFQTNPKVAAQLY------ATARQWVREIPVT 235

Query: 71  -VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129
            + DLFCG G  GL  A     + G E+  +AI+ A ++A++  + N +F   D  K   
Sbjct: 236 QMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFAT 295

Query: 130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDLDYLCHGVG 188
              +    P++V+ +P R G+  +L  +L ++ AP+ I+Y SCN  T A+D+  L     
Sbjct: 296 AQMS---APELVLVNPPRRGIGKELCDYLSQM-APKFILYSSCNAQTMAKDIAEL----- 346

Query: 189 DQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
                  Y+++ +Q  DMFPHT H E + LL  
Sbjct: 347 -----SGYQIERVQLFDMFPHTSHYEVLTLLVR 374

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA [Protein synthesis, tRNA and rRNA base modification]. Length = 374

>gnl|CDD|235332 PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated

 Score = 91.8 bits (229), Expect = 5e-22
 Identities = 65/233 (27%), Positives = 95/233 (40%), Gaps = 66/233 (28%)

Query: 22  GKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIE---DCA-GLRDDGSEIVLD 73
            +  + E L    R   ++   NSF Q N   A V  K++E   D   G + D    +L+
Sbjct: 160 DQDYVDERLPVAGREFIYRQVENSFTQPN---AAVNEKMLEWALDATKGSKGD----LLE 212

Query: 74  LFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG 122
           L+CG G   L LAR  + V   E+   +++ A  N   N I N   +            G
Sbjct: 213 LYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNG 272

Query: 123 --DLNKIGG------DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
             + N++ G      +F   F     V  DP R G+  + +K +      RI+Y+SCNP 
Sbjct: 273 VREFNRLKGIDLKSYNFSTIF-----V--DPPRAGLDDETLKLVQAY--ERILYISCNPE 323

Query: 175 TCARDLDYLC--HGVG-----DQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
           T   +L+ L   H V      DQ                FP+T H+EC  LLE
Sbjct: 324 TLCENLETLSQTHKVERFALFDQ----------------FPYTHHMECGVLLE 360

Length = 362

>gnl|CDD|114667 pfam05958, tRNA_U5-meth_tr, tRNA (Uracil-5-)-methyltransferase

 Score = 80.9 bits (200), Expect = 5e-18
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 50/225 (22%)

Query: 22  GKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIE---DCAGLRDDGSEIVLDL 74
            +  + ETL    R   ++   NSF Q N   A V  K++E   +           +L+L
Sbjct: 151 DQDYVDETLPVAGREFIYRQVENSFTQPN---AAVNIKMLEWACEVTQGSKGD---LLEL 204

Query: 75  FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ------------- 121
           +CG G   L LA+  + V   E+   +++ A  N   NNI N   ++             
Sbjct: 205 YCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGV 264

Query: 122 GDLNKIGG------DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPAT 175
            +  ++ G      +    F        DP R G+     K  L     RI+Y+SCNP T
Sbjct: 265 REFRRLKGIDLKSYNCSTIF-------VDPPRAGLDPDTCK--LVQAYERILYISCNPET 315

Query: 176 CARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
              +L+ L            ++++     D FP+T H+EC  LLE
Sbjct: 316 LKANLEQLSE---------THRVERFALFDQFPYTHHMECGVLLE 351

This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalyzed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity. Length = 353

>gnl|CDD|131198 TIGR02143, trmA_only, tRNA (uracil-5-)-methyltransferase

 Score = 80.9 bits (200), Expect = 5e-18
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 50/225 (22%)

Query: 22  GKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIE---DCAGLRDDGSEIVLDL 74
            +  + ETL    R   ++   NSF Q N   A V  K++E   +           +L+L
Sbjct: 151 DQDYVDETLPVAGREFIYRQVENSFTQPN---AAVNIKMLEWACEVTQGSKGD---LLEL 204

Query: 75  FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ------------- 121
           +CG G   L LA+  + V   E+   +++ A  N   NNI N   ++             
Sbjct: 205 YCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGV 264

Query: 122 GDLNKIGG------DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPAT 175
            +  ++ G      +    F        DP R G+     K  L     RI+Y+SCNP T
Sbjct: 265 REFRRLKGIDLKSYNCSTIF-------VDPPRAGLDPDTCK--LVQAYERILYISCNPET 315

Query: 176 CARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
              +L+ L            ++++     D FP+T H+EC  LLE
Sbjct: 316 LKANLEQLSE---------THRVERFALFDQFPYTHHMECGVLLE 351

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 353

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 63.2 bits (154), Expect = 3e-13
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 71  VLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129
           VLDL CGTG + L LA      V G ++ P A+  A + A      N   ++GD  ++  
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL-- 59

Query: 130 DFGNAFPKPDIVISDP---NRPGMHMKLIKFLLKLKAPRIVYV 169
               A    D++ISDP   +      + ++   +L  P  V V
Sbjct: 60  -PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 64.8 bits (159), Expect = 9e-13
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 71  VLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAKLNNISNATFVQGD-LNKI 127
           VLDL  G+G I L LA+      V   ++ P+A++ A +NA    + N  F+Q D    +
Sbjct: 91  VLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVEFLQSDWFEPL 150

Query: 128 GGDFGNAFPKPDIVISDP 145
            G       K D+++S+P
Sbjct: 151 PGG------KFDLIVSNP 162

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 71  VLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAKLNNISNATFVQGDL--NK 126
           VLDL  G+G I L LA+      V   ++ P+A++ A RNAK    +   F+QGD     
Sbjct: 112 VLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL 171

Query: 127 IGGDFGNAFPKPDIVISDP 145
            GG F       D+++S+P
Sbjct: 172 PGGRF-------DLIVSNP 183

Length = 275

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 56  LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAKLNN 113
           L+E    L     + +LDL  G+G I + LA+      V   ++ P A++ A  NA+ N 
Sbjct: 99  LVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG 158

Query: 114 ISNATFVQGDLNK-IGGDFGNAFPKPDIVISDP 145
           +     VQ DL + + G F       D+++S+P
Sbjct: 159 LVRVLVVQSDLFEPLRGKF-------DLIVSNP 184

Length = 280

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 10/123 (8%)

Query: 70  IVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK 126
            VLDL CGTG +   LA  +     V G ++  +AI  A  NAK     N  F+QGD+ +
Sbjct: 6   KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65

Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHM----KLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
           +           D+VIS+      H+    K+++ ++++  P  V +  +P   +     
Sbjct: 66  L-PQLQLEDNSFDVVISNE--VLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELPAL 122

Query: 183 LCH 185
           L  
Sbjct: 123 LED 125

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 71  VLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
           VLD+ CGTG++ + LAR      V G ++ P+ +  A  NAKL      TFVQGD     
Sbjct: 5   VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAP--- 61

Query: 129 GDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA 163
            D  +     D V       G    L++ L  L +
Sbjct: 62  -DALDLLEGFDAVFIG----GGGGDLLELLDALAS 91

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 20/95 (21%)

Query: 65  DDGSEI------------VLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAK 110
           D GS +            VLDL CG G +GL LA+      +   +V  +A+  A +N  
Sbjct: 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203

Query: 111 LNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145
            N + N      +L      +     K D++IS+P
Sbjct: 204 ANGVENTEVWASNL------YEPVEGKFDLIISNP 232

Length = 300

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 71  VLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKI 127
           VLD   G+G   L  AR      V G E+ P+A + A R   L  ++     V GD  ++
Sbjct: 4   VLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63

Query: 128 GGDFGNAFPKPDIVISDP---NRPGMHMKL 154
                      D+V+ +P    R G     
Sbjct: 64  L---ELPDGSFDLVLGNPPYGPRAGDPKDN 90

This family contains methyltransferase domains. Length = 117

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 71  VLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAKLNNISNATFVQGDL--NK 126
           VLDL CG G +G  LA+      V   ++  +A+  A  N   N + N      DL    
Sbjct: 35  VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAV 94

Query: 127 IGGDFGNAFPKPDIVISDP 145
             G F       D++IS+P
Sbjct: 95  EPGKF-------DLIISNP 106

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 64  RDDGSEIVLDLFCGTGTIGLTLA-RWVK-HVYGYEVVPQAISDACRNAKLNNI-SNATFV 120
                  +LDL  G G +GL LA R  K  + G E+  +A   A RN  LN +      +
Sbjct: 41  PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100

Query: 121 QGDLNKIGGDFGNAFPKP--DIVISDP 145
           + D+     +F  A      D++I +P
Sbjct: 101 EADIK----EFLKALVFASFDLIICNP 123

Length = 248

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT--FV 120
             D   + VL++  G+G + +  A+  K V G ++ P A+  A  NAKLNNI N     +
Sbjct: 19  AVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVI 78

Query: 121 QGDL 124
           + DL
Sbjct: 79  RSDL 82

Length = 188

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 18/115 (15%)

Query: 61  AGLRDD--GSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNA 117
           A LR D  G   VLDL  GTG + +  A      V   ++ P+A+ +  R      + + 
Sbjct: 38  AYLRGDLEGKT-VLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDV 95

Query: 118 TFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKL--IKFLLK-LKAPRIVY 168
            FV  D++   G       K D VI +P  P G   +     FLLK L+   +VY
Sbjct: 96  EFVVADVSDFRG-------KFDTVIMNP--PFGSQRRHADRPFLLKALEISDVVY 141

Length = 198

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 43  FQTNTHQAEVL-YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQ 100
           F T TH    L  + +ED     D   + V+D+ CG+G + +   +     V G ++ P 
Sbjct: 138 FGTGTHPTTSLCLEWLED----LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL 193

Query: 101 AISDACRNAKLNNIS--NATFVQGDLNKIGGDF 131
           A+  A +NA+LN +S      +      I G  
Sbjct: 194 AVESARKNAELNQVSDRLQVKLIYLEQPIEGKA 226

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 69  EIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNK 126
           E VLD+F G G   + +A+  +  VY  ++ P A+     N +LN +      + GD  +
Sbjct: 190 ETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE 249

Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIV 167
           +  + G A    D +I        H  L   L  LK   I+
Sbjct: 250 VAPELGVA----DRIIM-GLPKSAHEFLPLALELLKDGGII 285

Length = 341

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 38/171 (22%)

Query: 71  VLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNI--SNATFVQGD---- 123
           VL+LF  TG   +  A      V   ++  +A+  A  NA+LN +      F+ GD    
Sbjct: 221 VLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW 280

Query: 124 ---LNKIGGDFGNAFPKPDIVISDP----NRPGM-------HMKLIKFLLKLKAPRIVYV 169
                + G  F       D++I DP                +  L    L+L AP    V
Sbjct: 281 LRKAERRGEKF-------DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLV 333

Query: 170 SCNPATCAR--DLDYLCHGVGDQNIKGCYKLKSL----QPVDMFPHTPHIE 214
           +    +C+R    D     +         + + +    QP D  P    I 
Sbjct: 334 TS---SCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPD-HPRNAQIP 380

Length = 393

>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 12/80 (15%)

Query: 71  VLDLFCGTGTIGLTLA--RWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDL--N 125
           +LDL  G+G I L LA       V   ++ P A++ A  NA+ N + +   F+Q +L   
Sbjct: 118 ILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP 177

Query: 126 KIGGDFGNAFPKPDIVISDP 145
             G          DI++S+P
Sbjct: 178 LAGQKI-------DIIVSNP 190

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 43  FQTNTHQAEVL-YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQ 100
           F T TH    L  + +E          E VLD+ CG+G + +   +   K V G ++ P 
Sbjct: 139 FGTGTHPTTALCLEALES----LVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPV 194

Query: 101 AISDACRNAKLNNISN 116
           A+  A  NA+LN +  
Sbjct: 195 AVRAAKENAELNGVEA 210

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 71  VLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129
           +LDL CGTG +   LAR     V G ++  +A+  A    +        FV  D   +  
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP-KVRFVVADARDL-- 57

Query: 130 DFGNAFPKPDIVISD 144
            F       D+VI  
Sbjct: 58  PFEE--GSFDLVICA 70

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 59  DCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDA-CRNAKLNNISNA 117
              G R      VLD  CGTG + + LA+    V   ++  Q +  A  R    +   N 
Sbjct: 53  PLKGKR------VLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNV 106

Query: 118 TFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVY 168
            F   DL  + G+F +     D++I  P         +  L  L   R+++
Sbjct: 107 EFEVNDLLSLCGEF-DIVVCMDVLIHYPASDMAKA--LGHLASLTKERVIF 154

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKH------VYGYEVVPQAISDACRNAKLNNISN 116
           L  D    +LD+ CG G + + LARW +       V   +  P+A++ A  N +   ++ 
Sbjct: 56  LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTF 115

Query: 117 ATFVQGDLNKIGGDFGNAFPKPDIVIS 143
              V  +L   G  F       D+V S
Sbjct: 116 RQAVSDELVAEGERF-------DVVTS 135

Length = 232

>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 61  AGLRDDGSEIVLDLFCGTGTI---GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA 117
           AG +    + +LD  CG+GTI      +   +  +YG ++  + +  A  NA+   + + 
Sbjct: 24  AGWKPG--DPLLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQGARINAENAGVGDK 81

Query: 118 -TFVQGDLNKIGGDFGNAFPKPDIVISDP---NRPGMHMKLIK----FLLKLK---APRI 166
             FVQ D  K+    G      D ++++P    R G    L K    FL + K     R+
Sbjct: 82  IEFVQADAAKLPLLNG----SVDAIVTNPPYGIRIGSKGALEKLYPAFLREAKRVLRGRL 137

Query: 167 VYV 169
           V+ 
Sbjct: 138 VFA 140

This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 10/102 (9%)

Query: 43  FQTNTHQAEVL-YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQ 100
           F T TH    L  + +E          + VLD+ CG+G + +  A+   K V G ++ PQ
Sbjct: 141 FGTGTHPTTSLCLEALEK----LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQ 196

Query: 101 AISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142
           A+  A  NA+LN +      +G L     + G      D+++
Sbjct: 197 AVEAARENARLNGVELLVQAKGFLLLEVPENGPF----DVIV 234

Length = 300

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 53  LYKLIEDC----AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRN 108
           +Y+  ED     A LR+   + VL++  GTG + + L    K +   ++ P A+ +   N
Sbjct: 1   VYEPAEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELREN 60

Query: 109 AKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145
           AKLNN+     V  DL      F     K D+++ +P
Sbjct: 61  AKLNNV-GLDVVMTDL------FKGVRGKFDVILFNP 90

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 62  GLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATF 119
             R    + + D+  GTG+I +  A       V   E   +A+    RNA    + N   
Sbjct: 31  RPRPG--DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEV 88

Query: 120 VQGD 123
           V+GD
Sbjct: 89  VEGD 92

Length = 187

>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
                 + VLD    TG  G+  A    V  V   ++ P+A+     N +LN+  +A  +
Sbjct: 48  FGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVI 107

Query: 121 QGDLN 125
             D N
Sbjct: 108 NKDAN 112

Length = 380

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 11/82 (13%)

Query: 70  IVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAK-LNNISNATFVQGD---- 123
            VLDLF G+G +GL  L+R    V   E   +A+     N K L     A  ++ D    
Sbjct: 46  RVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA 105

Query: 124 LNKIGGDFGNAFPKPDIVISDP 145
           L ++G      F   D+V  DP
Sbjct: 106 LKQLGT--REPF---DLVFLDP 122

Length = 187

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 16/104 (15%)

Query: 20  LYGKSNITETLR---GLTFQI--SANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
           + G  + TET+    G  F+I  S   F      + E + KL+++         E+V+D+
Sbjct: 57  IAG-EDRTETIHKENGCRFKIDVSKVYFSPRLIGERERIAKLVKE--------GEVVVDM 107

Query: 75  FCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISN 116
           F G G   + +A+    K VY  E+ P+A+     N KLN +  
Sbjct: 108 FAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEG 151

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAKLNNISNAT 118
             LR    +++ D+  GTG++ +  AR V +  VY  E  P+A+    RN +   +SN  
Sbjct: 15  LRLRPG--DVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSNIV 72

Query: 119 FVQGDLNKIGGDFGNAFPKPDIVI 142
            V+GD  +   D     P PD V 
Sbjct: 73  IVEGDAPEAPED---LLPDPDAVF 93

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 38.3 bits (86), Expect = 0.002
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 49  QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLT--LARWVKHVYGYEVVPQAISDAC 106
             E+L  L+         G   VLD+ CGTG + L   L     +V G ++ P+ ++ A 
Sbjct: 30  AEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALAR 89

Query: 107 RNAKLNNISNATFVQGDLNKIGGDF--GNAFPKPDIVISDPNRPGMHMKLIKFLLKLK 162
             A+   +    FV  D       F    +F   D+VIS        +   K L +L 
Sbjct: 90  ARAEGAGLGLVDFVVADALGGVLPFEDSASF---DLVIS--LLVLHLLPPAKALRELL 142

Length = 257

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 69  EIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
           E VLDL  G G      AR V     V G ++ P+ ++ A  NA+    +N  F  G++ 
Sbjct: 79  ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE 138

Query: 126 KI 127
            +
Sbjct: 139 AL 140

Length = 272

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 69  EIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFV-QGDL 124
           + VLD+ CG+G I L +A      K V   ++ PQA+  A  NA+LN +    ++ QGDL
Sbjct: 121 KTVLDVGCGSG-I-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL 178

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	100.0
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	100.0
COG2265	432	TrmA SAM-dependent methyltransferases related to t	100.0
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	100.0
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	100.0
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	100.0
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	100.0
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	100.0
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.97
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.8
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.79
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.76
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.75
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.75
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.75
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.74
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.74
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.72
COG2890	280	HemK Methylase of polypeptide chain release factor	99.72
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.7
COG4123	248	Predicted O-methyltransferase [General function pr	99.7
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.7
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.7
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.69
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.68
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.68
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.67
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.67
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.65
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.65
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.64
COG2520	341	Predicted methyltransferase [General function pred	99.63
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.63
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.63
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.62
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.61
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.61
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.61
PRK14967	223	putative methyltransferase; Provisional	99.61
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.6
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.6
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.6
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.6
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.59
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.59
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.58
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.58
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.57
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.56
PLN02672	1082	methionine S-methyltransferase	99.55
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.55
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.55
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.55
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.54
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.53
PRK14968	188	putative methyltransferase; Provisional	99.52
KOG2904	328	consensus Predicted methyltransferase [General fun	99.52
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.51
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.51
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.51
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.5
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.49
PRK11207	197	tellurite resistance protein TehB; Provisional	99.49
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.49
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.49
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.48
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.48
PRK07402	196	precorrin-6B methylase; Provisional	99.48
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.46
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.46
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.46
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.46
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.45
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.45
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.45
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.45
PLN02244	340	tocopherol O-methyltransferase	99.45
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.44
PLN02476	278	O-methyltransferase	99.44
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.44
PRK04266	226	fibrillarin; Provisional	99.43
KOG1271	227	consensus Methyltransferases [General function pre	99.43
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.42
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.42
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.42
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.42
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.42
PRK12335	287	tellurite resistance protein TehB; Provisional	99.41
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.41
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.41
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.4
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.38
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.38
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.37
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.37
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.35
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.34
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.34
PHA03412	241	putative methyltransferase; Provisional	99.34
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.34
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.33
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.33
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.33
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.33
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.32
COG4122	219	Predicted O-methyltransferase [General function pr	99.32
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.31
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.31
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.31
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.31
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.31
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.31
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.3
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.3
PTZ00146	293	fibrillarin; Provisional	99.29
PRK04457	262	spermidine synthase; Provisional	99.29
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.28
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.26
KOG2730	263	consensus Methylase [General function prediction o	99.26
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.25
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.25
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.25
PLN03075	296	nicotianamine synthase; Provisional	99.24
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.23
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.22
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.22
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.22
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.21
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.21
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.21
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.2
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.19
PRK00811	283	spermidine synthase; Provisional	99.19
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.18
PLN02336	475	phosphoethanolamine N-methyltransferase	99.18
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.18
PLN02490	340	MPBQ/MSBQ methyltransferase	99.18
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.18
PHA03411	279	putative methyltransferase; Provisional	99.17
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.17
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.16
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.15
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.14
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.13
PRK06922	677	hypothetical protein; Provisional	99.13
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.12
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.12
PRK04148	134	hypothetical protein; Provisional	99.12
PRK01581	374	speE spermidine synthase; Validated	99.11
PRK08317	241	hypothetical protein; Provisional	99.11
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.09
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.09
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.08
PRK03612	521	spermidine synthase; Provisional	99.07
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.06
PLN02366	308	spermidine synthase	99.06
PRK05785	226	hypothetical protein; Provisional	99.06
PLN02336	475	phosphoethanolamine N-methyltransferase	99.06
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	99.05
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.05
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.05
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.05
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.05
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.04
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.04
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.02
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.0
TIGR00438	188	rrmJ cell division protein FtsJ.	99.0
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.0
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.99
PRK10742	250	putative methyltransferase; Provisional	98.98
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.98
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.97
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.96
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.94
TIGR03438	301	probable methyltransferase. This model represents	98.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.94
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.91
PRK06202	232	hypothetical protein; Provisional	98.89
COG2521	287	Predicted archaeal methyltransferase [General func	98.89
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.88
PLN02823	336	spermine synthase	98.85
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.85
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.84
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.83
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.81
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.81
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.81
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.79
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.77
COG4076	252	Predicted RNA methylase [General function predicti	98.77
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.77
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.76
KOG4300	252	consensus Predicted methyltransferase [General fun	98.73
KOG2078	495	consensus tRNA modification enzyme [RNA processing	98.69
KOG2361	264	consensus Predicted methyltransferase [General fun	98.69
KOG2899	288	consensus Predicted methyltransferase [General fun	98.68
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.66
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.65
KOG1227	351	consensus Putative methyltransferase [General func	98.63
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.61
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.59
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.58
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.56
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.56
PF13679	141	Methyltransf_32: Methyltransferase domain	98.53
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.48
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.45
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.45
COG3897	218	Predicted methyltransferase [General function pred	98.44
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.42
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.41
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.4
COG3129	292	Predicted SAM-dependent methyltransferase [General	98.37
KOG3010	261	consensus Methyltransferase [General function pred	98.33
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.31
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.26
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	98.26
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.25
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.23
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.22
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.19
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.14
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.12
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.1
KOG3115	249	consensus Methyltransferase-like protein [General	98.1
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.09
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	98.08
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.06
COG0286	489	HsdM Type I restriction-modification system methyl	98.03
PRK11524	284	putative methyltransferase; Provisional	98.01
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.99
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.99
PRK00536	262	speE spermidine synthase; Provisional	97.98
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.97
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.93
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.91
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.91
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.88
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.87
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.84
PRK13699	227	putative methylase; Provisional	97.84
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.84
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.8
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.77
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.76
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.76
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.75
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.75
PRK10458	467	DNA cytosine methylase; Provisional	97.74
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.72
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.64
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.55
PHA01634	156	hypothetical protein	97.51
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.45
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.41
KOG2912	419	consensus Predicted DNA methylase [Function unknow	97.35
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.28
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.28
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.23
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.22
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.21
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.16
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.14
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.03
TIGR00497	501	hsdM type I restriction system adenine methylase (	97.01
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.0
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.0
KOG2940	325	consensus Predicted methyltransferase [General fun	96.99
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.97
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.97
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.78
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.64
COG1568	354	Predicted methyltransferases [General function pre	96.6
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	96.43
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.39
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	96.33
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.22
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.16
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.01
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.0
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.87
COG0863	302	DNA modification methylase [DNA replication, recom	95.68
COG2961	279	ComJ Protein involved in catabolism of external DN	95.44
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	95.35
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.18
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	95.08
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.07
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.07
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.05
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.85
PRK13699	227	putative methylase; Provisional	94.7
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	94.67
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.5
KOG2360	413	consensus Proliferation-associated nucleolar prote	94.5
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	94.19
PRK11524	284	putative methyltransferase; Provisional	93.86
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	93.69
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	93.54
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	93.5
PRK10669	558	putative cation:proton antiport protein; Provision	93.45
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	93.34
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	93.31
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.28
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	93.28
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.05
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	92.94
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.71
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.45
COG1255	129	Uncharacterized protein conserved in archaea [Func	91.41
KOG3924	419	consensus Putative protein methyltransferase invol	91.41
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	91.07
KOG2920	282	consensus Predicted methyltransferase [General fun	90.88
PRK09496	453	trkA potassium transporter peripheral membrane com	90.69
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.3
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	89.71
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	89.43
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	89.28
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.18
PRK09496	453	trkA potassium transporter peripheral membrane com	89.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.08
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	87.97
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.94
PTZ00357	1072	methyltransferase; Provisional	87.29
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	87.1
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	86.89
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	86.68
COG1565	370	Uncharacterized conserved protein [Function unknow	86.25
KOG1331	293	consensus Predicted methyltransferase [General fun	85.91
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	85.83
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	85.77
PLN03209	576	translocon at the inner envelope of chloroplast su	85.71
PLN02540	565	methylenetetrahydrofolate reductase	85.61
cd05564	96	PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic	85.56
PRK07904	253	short chain dehydrogenase; Provisional	85.34
PRK05867	253	short chain dehydrogenase; Provisional	85.22
COG2933	358	Predicted SAM-dependent methyltransferase [General	85.11
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	84.65
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	84.53
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	84.17
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	83.5
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	83.14
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	82.85
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	82.83
PRK06125	259	short chain dehydrogenase; Provisional	82.51
PRK06172	253	short chain dehydrogenase; Provisional	82.28
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	81.94
COG4798	238	Predicted methyltransferase [General function pred	81.56
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	81.15
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	80.94
PRK08339	263	short chain dehydrogenase; Provisional	80.69

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=100.00  E-value=1.4e-36  Score=260.56  Aligned_cols=204  Identities=31%  Similarity=0.469  Sum_probs=183.1

Q ss_pred             cccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhH
Q 043853            3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG   82 (222)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~   82 (222)
                      |.|+...+.++++++..++|++++.+++.|..|.+++++|+|.|....+.+.+.+.+.+...  ++.+|||+|||+|.++
T Consensus       171 ~~~~~~~~~~~g~~~~~l~G~~~i~e~~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~--~~~~vLDL~cG~G~~~  248 (374)
T TIGR02085       171 NIQPVHMAILEGEEEIFLTEQQALPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREI--PVTQMWDLFCGVGGFG  248 (374)
T ss_pred             EECCCCCCceECceEEEEcCCCeeEEEECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhc--CCCEEEEccCCccHHH
Confidence            45666777778888888999999999999999999999999999999999998887765422  2579999999999999


Q ss_pred             HHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCC
Q 043853           83 LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK  162 (222)
Q Consensus        83 ~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~  162 (222)
                      +.++..+.+++|+|+|+.+++.|++|++.+++++++++++|+.++.....   ..||+|++||||.++...+++.+..++
T Consensus       249 l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~---~~~D~vi~DPPr~G~~~~~l~~l~~~~  325 (374)
T TIGR02085       249 LHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM---SAPELVLVNPPRRGIGKELCDYLSQMA  325 (374)
T ss_pred             HHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC---CCCCEEEECCCCCCCcHHHHHHHHhcC
Confidence            99998778999999999999999999999999889999999987754321   359999999999999999999999999


Q ss_pred             CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          163 APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       163 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      |++++|++|+|.++++|+..|          .||++..+.++||||+|+|+|+|++|+|
T Consensus       326 p~~ivyvsc~p~TlaRDl~~L----------~gy~l~~~~~~DmFPqT~HvE~v~ll~r  374 (374)
T TIGR02085       326 PKFILYSSCNAQTMAKDIAEL----------SGYQIERVQLFDMFPHTSHYEVLTLLVR  374 (374)
T ss_pred             CCeEEEEEeCHHHHHHHHHHh----------cCceEEEEEEeccCCCCCcEEEEEEEeC
Confidence            999999999999999999987          3799999999999999999999999986

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=100.00  E-value=3.7e-36  Score=252.97  Aligned_cols=204  Identities=33%  Similarity=0.467  Sum_probs=183.7

Q ss_pred             cccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhH
Q 043853            3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG   82 (222)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~   82 (222)
                      +.+++..+.++++++..++|+..+.+++.+..|.+.+++|+|.|..+++.+.+.+.+.+...  ++.+|||+|||+|.++
T Consensus       111 ~~~~~~~~~~~g~~~~~l~g~~~~~~~~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~--~~~~VLDl~cG~G~~s  188 (315)
T PRK03522        111 NIQPVHMAILEGEEEIFLTEQQALPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWVREL--PPRSMWDLFCGVGGFG  188 (315)
T ss_pred             EECCCCCCcccCCceEEEeCCCeEEEEECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhc--CCCEEEEccCCCCHHH
Confidence            45677777778888888999999999999999999999999999999999988887776422  2579999999999999


Q ss_pred             HHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCC
Q 043853           83 LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK  162 (222)
Q Consensus        83 ~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~  162 (222)
                      +.+++.+.+|+|+|+|+.+++.|++|++.+++++++++++|+.++....   .+.||+|++|||+.++...+.+.+....
T Consensus       189 l~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~---~~~~D~Vv~dPPr~G~~~~~~~~l~~~~  265 (315)
T PRK03522        189 LHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ---GEVPDLVLVNPPRRGIGKELCDYLSQMA  265 (315)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc---CCCCeEEEECCCCCCccHHHHHHHHHcC
Confidence            9999888899999999999999999999999988999999998875432   1369999999999999999999999999


Q ss_pred             CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          163 APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       163 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      +++++|++|+|.++++|++.+          .+|++..+.++||||+|+|+|+|++|+|
T Consensus       266 ~~~ivyvsc~p~t~~rd~~~l----------~~y~~~~~~~~DmFP~T~HvE~v~~l~r  314 (315)
T PRK03522        266 PRFILYSSCNAQTMAKDLAHL----------PGYRIERVQLFDMFPHTAHYEVLTLLVR  314 (315)
T ss_pred             CCeEEEEECCcccchhHHhhc----------cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence            999999999999999999876          3799999999999999999999999987

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-35  Score=255.86  Aligned_cols=200  Identities=48%  Similarity=0.749  Sum_probs=185.9

Q ss_pred             ccccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchh
Q 043853            2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI   81 (222)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~   81 (222)
                      .|++++.++.+.+++...++|...+.+   +..|.+++.+|+|.|...++.+++++.+.++..+  ++++||++||.|.+
T Consensus       233 ~~i~~~~~~~i~g~~~~~~~~~~~i~e---~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~--~~~vlDlYCGvG~f  307 (432)
T COG2265         233 QNINRAKTNVIEGDEEITLYGLESIRE---GVSFQISPRSFFQVNPAVAEKLYETALEWLELAG--GERVLDLYCGVGTF  307 (432)
T ss_pred             EEecCCCCceEEcceeEEEeccccccc---ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcC--CCEEEEeccCCChh
Confidence            578999999999999999999884444   9999999999999999999999999999987544  78999999999999


Q ss_pred             HHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhC
Q 043853           82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKL  161 (222)
Q Consensus        82 ~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l  161 (222)
                      ++.+|+...+|+|+|+++.+++.|++|++.|++.|++++.+|+.++...+. ....+|.|+.||||.|..+.+++.+..+
T Consensus       308 ~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-~~~~~d~VvvDPPR~G~~~~~lk~l~~~  386 (432)
T COG2265         308 GLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-EGYKPDVVVVDPPRAGADREVLKQLAKL  386 (432)
T ss_pred             hhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-ccCCCCEEEECCCCCCCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999987654 2247999999999999999999999999


Q ss_pred             CCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeE
Q 043853          162 KAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC  215 (222)
Q Consensus       162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  215 (222)
                      +|.+++|+||||.|+++|+..|.        +.||++..+.++||||+|+|+|+
T Consensus       387 ~p~~IvYVSCNP~TlaRDl~~L~--------~~gy~i~~v~~~DmFP~T~HvE~  432 (432)
T COG2265         387 KPKRIVYVSCNPATLARDLAILA--------STGYEIERVQPFDMFPHTHHVEA  432 (432)
T ss_pred             CCCcEEEEeCCHHHHHHHHHHHH--------hCCeEEEEEEEeccCCCccccCC
Confidence            99999999999999999999997        78999999999999999999985

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=100.00  E-value=1.4e-34  Score=247.25  Aligned_cols=192  Identities=27%  Similarity=0.449  Sum_probs=170.4

Q ss_pred             ceEEEeCCCceeeee--cC--eeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCe
Q 043853           16 EEYTLYGKSNITETL--RG--LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH   91 (222)
Q Consensus        16 ~~~~~~g~~~~~~~~--~~--~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~   91 (222)
                      +..+++|.+++.+++  ++  ..|++++++|+|.|...++.+++++.+.+...   +.++||+|||+|.+++++++...+
T Consensus       154 ~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~~~~  230 (362)
T PRK05031        154 KQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWALDATKGS---KGDLLELYCGNGNFTLALARNFRR  230 (362)
T ss_pred             CcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhhCCE
Confidence            346789999998888  67  88999999999999999999999998876421   257999999999999999998889


Q ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCC------------CCCCcEEEECCCCCCccHHHHHHHH
Q 043853           92 VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA------------FPKPDIVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus        92 v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~------------~~~fD~ii~~pp~~~~~~~~~~~l~  159 (222)
                      |+|+|+++.+++.|++|++.+++++++++.+|+.++...+...            ..+||+|+.||||.++...+++.+.
T Consensus       231 v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~  310 (362)
T PRK05031        231 VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ  310 (362)
T ss_pred             EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHH
Confidence            9999999999999999999999988999999998876433210            1258999999999999999999997


Q ss_pred             hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          160 KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       160 ~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      .  +++++|+||+|.++++|+..|.        + ||++..+.++||||+|+|+|+|++|+|
T Consensus       311 ~--~~~ivyvSC~p~tlarDl~~L~--------~-gY~l~~v~~~DmFPqT~HvE~v~lL~r  361 (362)
T PRK05031        311 A--YERILYISCNPETLCENLETLS--------Q-THKVERFALFDQFPYTHHMECGVLLEK  361 (362)
T ss_pred             c--cCCEEEEEeCHHHHHHHHHHHc--------C-CcEEEEEEEcccCCCCCcEEEEEEEEe
Confidence            5  7899999999999999999984        3 899999999999999999999999987

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=100.00  E-value=1.3e-34  Score=253.78  Aligned_cols=186  Identities=37%  Similarity=0.508  Sum_probs=164.8

Q ss_pred             eeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHH
Q 043853           26 ITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDA  105 (222)
Q Consensus        26 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a  105 (222)
                      ..++++|..|.+.+++|+|.|...++.+.+.+.+.+...  ++.+|||+|||+|.+++.+++.+.+++|+|+|+.|++.|
T Consensus       258 ~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~--~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A  335 (443)
T PRK13168        258 YYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQ--PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERA  335 (443)
T ss_pred             eEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCC--CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence            344589999999999999999999999999998887543  368999999999999999998888999999999999999


Q ss_pred             HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhc
Q 043853          106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCH  185 (222)
Q Consensus       106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~  185 (222)
                      ++|++.+++++++++++|+.+...........||+|++|||+.+.. .+++.+..+++++++|+||+|.++++|+..|. 
T Consensus       336 ~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~-~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~-  413 (443)
T PRK13168        336 RENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA-EVMQALAKLGPKRIVYVSCNPATLARDAGVLV-  413 (443)
T ss_pred             HHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH-HHHHHHHhcCCCeEEEEEeChHHhhccHHHHh-
Confidence            9999999998899999999875432111124699999999999874 66788888999999999999999999999996 


Q ss_pred             cCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          186 GVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                             +.||++..+.++||||+|+|+|+|++|+|+
T Consensus       414 -------~~gY~l~~i~~~DmFP~T~HvE~v~lL~r~  443 (443)
T PRK13168        414 -------EAGYRLKRAGMLDMFPHTGHVESMALFERG  443 (443)
T ss_pred             -------hCCcEEEEEEEeccCCCCCcEEEEEEEEeC
Confidence                   689999999999999999999999999986

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=100.00  E-value=8.2e-35  Score=247.62  Aligned_cols=194  Identities=47%  Similarity=0.734  Sum_probs=149.6

Q ss_pred             cCceEEEeCCCceeeee----cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC
Q 043853           14 GEEEYTLYGKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV   89 (222)
Q Consensus        14 ~~~~~~~~g~~~~~~~~----~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~   89 (222)
                      +.....++|..++.+.+    .+..|++++++|+|.|..+++.+++++.+.++..+  + .+||++||+|.+++.+|..+
T Consensus       142 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~--~-~vlDlycG~G~fsl~la~~~  218 (352)
T PF05958_consen  142 SKKTKIVLGQDYVEERLEIQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSK--G-DVLDLYCGVGTFSLPLAKKA  218 (352)
T ss_dssp             CTCEEEECS-CEEECE--ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-T--T-EEEEES-TTTCCHHHHHCCS
T ss_pred             CCccEEEccCcEEeeEeeeeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCC--C-cEEEEeecCCHHHHHHHhhC
Confidence            34456667766555544    37899999999999999999999999999886443  3 79999999999999999999


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC------------CCCCCcEEEECCCCCCccHHHHHH
Q 043853           90 KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN------------AFPKPDIVISDPNRPGMHMKLIKF  157 (222)
Q Consensus        90 ~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~------------~~~~fD~ii~~pp~~~~~~~~~~~  157 (222)
                      .+|+|+|+++.+++.|++|++.|+++|++++.+++.++...+..            ....+|+|+.||||.|+...+++.
T Consensus       219 ~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~  298 (352)
T PF05958_consen  219 KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIEL  298 (352)
T ss_dssp             SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHH
T ss_pred             CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHH
Confidence            99999999999999999999999999999999988765432211            112589999999999999999998


Q ss_pred             HHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          158 LLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       158 l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      +..+  ..++|+||+|.|+++|+..|.         .||++..+.++||||+|+|+|+|++|+|
T Consensus       299 ~~~~--~~ivYvSCnP~tlaRDl~~L~---------~~y~~~~v~~~DmFP~T~HvE~v~lL~r  351 (352)
T PF05958_consen  299 IKKL--KRIVYVSCNPATLARDLKILK---------EGYKLEKVQPVDMFPQTHHVETVALLER  351 (352)
T ss_dssp             HHHS--SEEEEEES-HHHHHHHHHHHH---------CCEEEEEEEEE-SSTTSS--EEEEEEEE
T ss_pred             HhcC--CeEEEEECCHHHHHHHHHHHh---------hcCEEEEEEEeecCCCCCcEEEEEEEEe
Confidence            8754  689999999999999999984         4899999999999999999999999998

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=100.00  E-value=7.2e-34  Score=241.92  Aligned_cols=192  Identities=26%  Similarity=0.430  Sum_probs=168.9

Q ss_pred             ceEEEeCCCceeeee--cC--eeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCe
Q 043853           16 EEYTLYGKSNITETL--RG--LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH   91 (222)
Q Consensus        16 ~~~~~~g~~~~~~~~--~~--~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~   91 (222)
                      +..+++|+.++.+.+  +|  ..|.+++++|+|.|..+.+.+++++.+.+...   +.++||+|||+|.+++.+++...+
T Consensus       145 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~---~~~vlDl~~G~G~~sl~la~~~~~  221 (353)
T TIGR02143       145 KKKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGS---KGDLLELYCGNGNFSLALAQNFRR  221 (353)
T ss_pred             CcEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcC---CCcEEEEeccccHHHHHHHHhCCE
Confidence            456788998888887  67  78999999999999999999999998876422   246999999999999999998889


Q ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-------C-----CCCCcEEEECCCCCCccHHHHHHHH
Q 043853           92 VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-------A-----FPKPDIVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus        92 v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-------~-----~~~fD~ii~~pp~~~~~~~~~~~l~  159 (222)
                      |+|+|+++.+++.|++|++.+++++++++.+|+.++......       .     ...||+|+.||||.++...+++.+.
T Consensus       222 v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~  301 (353)
T TIGR02143       222 VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQ  301 (353)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHH
Confidence            999999999999999999999998899999999887643110       0     1148999999999999999999987


Q ss_pred             hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          160 KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       160 ~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      .  +++++|+||+|.++++|+..|.        + +|++..+.++||||+|+|+|+|++|+|
T Consensus       302 ~--~~~ivYvsC~p~tlaRDl~~L~--------~-~Y~l~~v~~~DmFP~T~HvE~v~lL~r  352 (353)
T TIGR02143       302 A--YERILYISCNPETLKANLEQLS--------E-THRVERFALFDQFPYTHHMECGVLLER  352 (353)
T ss_pred             c--CCcEEEEEcCHHHHHHHHHHHh--------c-CcEEEEEEEcccCCCCCcEEEEEEEEe
Confidence            5  7999999999999999999985        3 399999999999999999999999987

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=100.00  E-value=7.4e-34  Score=248.58  Aligned_cols=202  Identities=44%  Similarity=0.709  Sum_probs=181.1

Q ss_pred             cccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhH
Q 043853            3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG   82 (222)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~   82 (222)
                      |.|++..+.++++++..++|+..+.++++|..|.+++++|+|.|...++.+.+.+.+.+...  ++.+|||+|||+|.++
T Consensus       230 ~~~~~~~~~~~g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~--~~~~vLDl~cG~G~~s  307 (431)
T TIGR00479       230 NINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQ--GEELVVDAYCGVGTFT  307 (431)
T ss_pred             EeCCCCCCeeeCCceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccC--CCCEEEEcCCCcCHHH
Confidence            56677788888889999999999999999999999999999999999999998888877543  3679999999999999


Q ss_pred             HHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCC
Q 043853           83 LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK  162 (222)
Q Consensus        83 ~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~  162 (222)
                      +.+++.+.+|+|+|+++.+++.|++|++.+++++++++++|+.+....+......||+|++|||+.++...+++.+..++
T Consensus       308 l~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~  387 (431)
T TIGR00479       308 LPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELK  387 (431)
T ss_pred             HHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHhcC
Confidence            99998888999999999999999999999999889999999987644322122469999999999998899999998899


Q ss_pred             CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCcee
Q 043853          163 APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE  214 (222)
Q Consensus       163 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  214 (222)
                      +++++|++|+|.++++|+..|.        +.||++..+.++||||+|+|+|
T Consensus       388 ~~~ivyvsc~p~tlard~~~l~--------~~gy~~~~~~~~DmFP~T~HvE  431 (431)
T TIGR00479       388 PERIVYVSCNPATLARDLEFLC--------KEGYGITWVQPVDMFPHTAHVE  431 (431)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHH--------HCCeeEEEEEEeccCCCCCCCC
Confidence            9999999999999999999986        6789999999999999999986

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=8.4e-31  Score=224.29  Aligned_cols=207  Identities=48%  Similarity=0.714  Sum_probs=184.5

Q ss_pred             CCCCcccc---CceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH
Q 043853            7 SVGNTSVG---EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL   83 (222)
Q Consensus         7 ~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~   83 (222)
                      ...++.-+   ...+++.|+.++.+.+.|++|+|++++|||.|...++.+...+.+.++++.  ++.++|++||||.+++
T Consensus       322 ~~~~ts~~~~~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~--~k~llDv~CGTG~igl  399 (534)
T KOG2187|consen  322 ESGHTSDGQEGKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPA--DKTLLDVCCGTGTIGL  399 (534)
T ss_pred             cccccccCCCCCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCC--CcEEEEEeecCCceeh
Confidence            33444444   577889998899999999999999999999999999999999999998776  7999999999999999


Q ss_pred             HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCC-CCCc-EEEECCCCCCccHHHHHHHHhC
Q 043853           84 TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPD-IVISDPNRPGMHMKLIKFLLKL  161 (222)
Q Consensus        84 ~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~fD-~ii~~pp~~~~~~~~~~~l~~l  161 (222)
                      ++|++..+|+|+|++|.+++.|++|++.||++|++|+++-+++....+.++. +.-+ ++++||||.|++..++..++..
T Consensus       400 ala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~  479 (534)
T KOG2187|consen  400 ALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAY  479 (534)
T ss_pred             hhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhc
Confidence            9999999999999999999999999999999999999997777665544321 2334 7899999999999999999997


Q ss_pred             C-CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeE
Q 043853          162 K-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC  215 (222)
Q Consensus       162 ~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  215 (222)
                      + +.+++|++|++.+.++++..++.....+...+.|++..+.++|+||+|+|+|+
T Consensus       480 ~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~~~VDlfP~T~h~E~  534 (534)
T KOG2187|consen  480 KNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKAVGVDLFPHTPHCEM  534 (534)
T ss_pred             cCccceEEEEcCHHHhhhhHHHhhcCccccccccccceeeeeecccCCCCCcCCC
Confidence            6 89999999999999999999988777777788899999999999999999984

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.80  E-value=9e-18  Score=132.03  Aligned_cols=145  Identities=21%  Similarity=0.290  Sum_probs=111.4

Q ss_pred             ceEEEeCCCceeeeecCeeEEEcCC-ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHH-HhhcCCeEE
Q 043853           16 EEYTLYGKSNITETLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLT-LARWVKHVY   93 (222)
Q Consensus        16 ~~~~~~g~~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~-la~~~~~v~   93 (222)
                      +.+++-|.      +.|+++..+.+ .+.+......+.+.+++...     .++.+|||+|||+|.+++. +++...+|+
T Consensus        12 ~mrIi~g~------~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~-----~~~~~vLDl~~GsG~l~l~~lsr~a~~V~   80 (199)
T PRK10909         12 QIRIIGGQ------WRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV-----IVDARCLDCFAGSGALGLEALSRYAAGAT   80 (199)
T ss_pred             CEEEEeec------cCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh-----cCCCEEEEcCCCccHHHHHHHHcCCCEEE
Confidence            46666553      68888888775 34443333444444444322     1367999999999999995 566667999


Q ss_pred             EEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-CCCccHHHHHHHHh---CCCCcEEEE
Q 043853           94 GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-RPGMHMKLIKFLLK---LKAPRIVYV  169 (222)
Q Consensus        94 gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-~~~~~~~~~~~l~~---l~~~~~v~~  169 (222)
                      ++|+++.+++.+++|++.+++++++++++|+.+.....   ...||+|++||| +.++...+++.+..   +.+++++|+
T Consensus        81 ~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~---~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~v  157 (199)
T PRK10909         81 LLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP---GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYV  157 (199)
T ss_pred             EEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc---CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEE
Confidence            99999999999999999999888999999998765321   236999999999 67888888888876   589999999


Q ss_pred             eeCcc
Q 043853          170 SCNPA  174 (222)
Q Consensus       170 ~~~~~  174 (222)
                      +++..
T Consensus       158 e~~~~  162 (199)
T PRK10909        158 ESEVE  162 (199)
T ss_pred             EecCC
Confidence            98763

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.79  E-value=1.6e-18  Score=148.83  Aligned_cols=150  Identities=23%  Similarity=0.299  Sum_probs=125.2

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNA  117 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v  117 (222)
                      .+|||++....+.+..++.+.+.... ++.+|||++||+|.+++.++....  +|+++|+++.+++.+++|++.|+++++
T Consensus        31 ~vFyqp~~~~nrdl~~~v~~~~~~~~-~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~  109 (382)
T PRK04338         31 PVFYNPRMELNRDISVLVLRAFGPKL-PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENE  109 (382)
T ss_pred             CeeeCccccchhhHHHHHHHHHHhhc-CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCce
Confidence            58999999999988887777663210 246899999999999999886543  899999999999999999999999888


Q ss_pred             EEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHH-HHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCe
Q 043853          118 TFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKF-LLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCY  196 (222)
Q Consensus       118 ~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (222)
                      ++.++|+..+...    .+.||+|++|||  +....+++. +..+++++++|++      ++|.+.|+         +.|
T Consensus       110 ~v~~~Da~~~l~~----~~~fD~V~lDP~--Gs~~~~l~~al~~~~~~gilyvS------AtD~~~L~---------g~y  168 (382)
T PRK04338        110 KVFNKDANALLHE----ERKFDVVDIDPF--GSPAPFLDSAIRSVKRGGLLCVT------ATDTAPLC---------GAY  168 (382)
T ss_pred             EEEhhhHHHHHhh----cCCCCEEEECCC--CCcHHHHHHHHHHhcCCCEEEEE------ecCchhhc---------CCC
Confidence            9999999887542    146999999998  555677776 7778999999999      68888885         348


Q ss_pred             EEeEeeeeccCCCCC
Q 043853          197 KLKSLQPVDMFPHTP  211 (222)
Q Consensus       197 ~~~~~~~~~~~p~~~  211 (222)
                      +...++++++||+..
T Consensus       169 ~~~~~~~yd~fP~~~  183 (382)
T PRK04338        169 PKSCLRKYGAVPLKT  183 (382)
T ss_pred             hHHHHHHhcCcccCC
Confidence            999999999999876

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.76  E-value=1.1e-16  Score=138.16  Aligned_cols=150  Identities=17%  Similarity=0.241  Sum_probs=106.4

Q ss_pred             cCceEEEeCCC---ceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH
Q 043853           14 GEEEYTLYGKS---NITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL   85 (222)
Q Consensus        14 ~~~~~~~~g~~---~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l   85 (222)
                      +...+.++|+.   .+...++|++|.++..     +||......    ..++....     ++++|||+|||+|++++.+
T Consensus       168 ~~~~~~~~G~~~~~~~~v~E~g~~f~vdl~~g~ktG~flDqr~~----R~~~~~~~-----~g~rVLDlfsgtG~~~l~a  238 (396)
T PRK15128        168 ELTQGPVTGELPPALLPIEEHGMKLLVDIQGGHKTGYYLDQRDS----RLATRRYV-----ENKRVLNCFSYTGGFAVSA  238 (396)
T ss_pred             CccceEEecCCCCccEEEEECCEEEEEecccccccCcChhhHHH----HHHHHHhc-----CCCeEEEeccCCCHHHHHH
Confidence            34566788874   4778899999999853     566532111    22233332     3689999999999999976


Q ss_pred             hhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccH----------
Q 043853           86 ARW-VKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHM----------  152 (222)
Q Consensus        86 a~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~----------  152 (222)
                      +.. ..+|+++|+|+.+++.|++|++.|+++  +++++++|+.++...+.....+||+|++|||+-....          
T Consensus       239 a~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y  318 (396)
T PRK15128        239 LMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGY  318 (396)
T ss_pred             HhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHH
Confidence            554 459999999999999999999999985  6999999999886554322347999999999522111          


Q ss_pred             -HHH-HHHHhCCCCcEEEE-eeC
Q 043853          153 -KLI-KFLLKLKAPRIVYV-SCN  172 (222)
Q Consensus       153 -~~~-~~l~~l~~~~~v~~-~~~  172 (222)
                       .+. ..+..++++|+++. +|+
T Consensus       319 ~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        319 KDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             HHHHHHHHHHcCCCeEEEEEeCC
Confidence             111 12344788887764 443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.75  E-value=1.2e-16  Score=123.19  Aligned_cols=129  Identities=28%  Similarity=0.321  Sum_probs=96.8

Q ss_pred             eeEEEcCCccccCCHH-HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHH
Q 043853           33 LTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNA  109 (222)
Q Consensus        33 ~~~~~~~~~f~~~~~~-~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~  109 (222)
                      ++|...++.|.+.... .+..+.+.+...      +..+|||+|||+|.+++.+++..+  +++++|+|+.+++.+++|+
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~   75 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNA   75 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHH
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence            5688889999977765 444555555544      367999999999999999998766  5999999999999999999


Q ss_pred             HHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-------cHHHHHHH-HhCCCCcEEEEeeC
Q 043853          110 KLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-------HMKLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       110 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-------~~~~~~~l-~~l~~~~~v~~~~~  172 (222)
                      +.++++++++.+.|+.+...     ..+||+|++|||...-       ...+++.. ..|+++|.+++..+
T Consensus        76 ~~n~~~~v~~~~~d~~~~~~-----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen   76 ERNGLENVEVVQSDLFEALP-----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             HHTTCTTEEEEESSTTTTCC-----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhcCcccccccccccccccc-----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            99999889999999977543     2589999999994322       23333333 33889998865554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.75  E-value=1.4e-16  Score=130.00  Aligned_cols=163  Identities=18%  Similarity=0.216  Sum_probs=115.4

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDA  105 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a  105 (222)
                      ..++|..|.+++++|.+  .+.++.+++.+...+... .+..+|||+|||+|.+++.+++..  .+++|+|+|+.+++.|
T Consensus        50 ~~f~g~~~~v~~~vf~p--r~~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A  126 (251)
T TIGR03704        50 AEFCGLRIAVDPGVFVP--RRRTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCA  126 (251)
T ss_pred             CeEcCeEEEECCCCcCC--CccHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            45689999999999985  467788888777654311 124589999999999999988653  4899999999999999


Q ss_pred             HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc----------------------------cHHHHHH
Q 043853          106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM----------------------------HMKLIKF  157 (222)
Q Consensus       106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~----------------------------~~~~~~~  157 (222)
                      ++|++.++   ++++++|+.+......  .+.||+|++|||+...                            ...+++.
T Consensus       127 ~~N~~~~~---~~~~~~D~~~~l~~~~--~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~  201 (251)
T TIGR03704       127 RRNLADAG---GTVHEGDLYDALPTAL--RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG  201 (251)
T ss_pred             HHHHHHcC---CEEEEeechhhcchhc--CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH
Confidence            99998876   3789999876542211  1369999999995321                            0122322


Q ss_pred             H-HhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeecc
Q 043853          158 L-LKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDM  206 (222)
Q Consensus       158 l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (222)
                      . ..++++|.+++.........-...+.        +.+|+......-|+
T Consensus       202 a~~~L~~gG~l~l~~~~~~~~~v~~~l~--------~~g~~~~~~~~~~~  243 (251)
T TIGR03704       202 APDWLAPGGHLLVETSERQAPLAVEAFA--------RAGLIARVASSEEL  243 (251)
T ss_pred             HHHhcCCCCEEEEEECcchHHHHHHHHH--------HCCCCceeeEcccc
Confidence            2 23789999998887765544444443        45665555554444

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.75  E-value=1.7e-16  Score=146.39  Aligned_cols=171  Identities=22%  Similarity=0.213  Sum_probs=123.8

Q ss_pred             CceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeC
Q 043853           24 SNITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEV   97 (222)
Q Consensus        24 ~~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~   97 (222)
                      ..+...++|.+|.++..     +||.....    ..+++....     .+++|||+|||+|++++.++..+. +|+++|+
T Consensus       499 ~~~~v~e~g~~f~v~~~~~~~tG~flDqr~----~R~~~~~~~-----~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~  569 (702)
T PRK11783        499 EFLEVTEYGAKLLVNLTDYLDTGLFLDHRP----TRRMIGQMA-----KGKDFLNLFAYTGTASVHAALGGAKSTTTVDM  569 (702)
T ss_pred             ceEEEEECCEEEEEEcCCCCcceECHHHHH----HHHHHHHhc-----CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeC
Confidence            35778899999999953     45543211    134444443     367999999999999999988654 7999999


Q ss_pred             CHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-------------cHHHHHH-HHhC
Q 043853           98 VPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-------------HMKLIKF-LLKL  161 (222)
Q Consensus        98 ~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-------------~~~~~~~-l~~l  161 (222)
                      |+.+++.|++|++.|+++  +++++++|+.++....   ..+||+|++|||+-..             ...+... +..+
T Consensus       570 s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~---~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL  646 (702)
T PRK11783        570 SNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA---REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLL  646 (702)
T ss_pred             CHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc---CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHc
Confidence            999999999999999986  5999999998876543   2479999999994221             1223333 3448


Q ss_pred             CCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeecc---CCCCCcee
Q 043853          162 KAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDM---FPHTPHIE  214 (222)
Q Consensus       162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~  214 (222)
                      +++|+++++++...+..+.+.+.        +.|+++..+.....   ||..+.+.
T Consensus       647 ~~gG~l~~~~~~~~~~~~~~~~~--------~~g~~~~~i~~~~~~~Dhp~~~~~~  694 (702)
T PRK11783        647 RPGGTLYFSNNKRGFKMDEEGLA--------KLGLKAEEITAKTLPPDFARNPKIH  694 (702)
T ss_pred             CCCCEEEEEeCCccCChhHHHHH--------hCCCeEEEEecCCCCCCCCCCcccc
Confidence            99999999999888887777664        45677666553222   55555433

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.74  E-value=1e-16  Score=136.90  Aligned_cols=153  Identities=23%  Similarity=0.241  Sum_probs=115.1

Q ss_pred             EEEeCC---CceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC
Q 043853           18 YTLYGK---SNITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV   89 (222)
Q Consensus        18 ~~~~g~---~~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~   89 (222)
                      +.++|.   ..+...++|.+|.++..     +||......    .+++...+     .+++|||++|-||++++.+|.++
T Consensus       169 ~~~~g~~~~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~----R~~l~~~~-----~GkrvLNlFsYTGgfSv~Aa~gG  239 (393)
T COG1092         169 QYLKGEEAPEEVVIEENGVKFLVDLVDGLKTGFFLDQRDN----RRALGELA-----AGKRVLNLFSYTGGFSVHAALGG  239 (393)
T ss_pred             cccccccCCCcEEEEeCCeEEEEecCCcccceeeHHhHHH----HHHHhhhc-----cCCeEEEecccCcHHHHHHHhcC
Confidence            345553   27888999999999864     777642222    23344443     27899999999999999999876


Q ss_pred             C-eEEEEeCCHHHHHHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCC-----CCc------cHHHH
Q 043853           90 K-HVYGYEVVPQAISDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR-----PGM------HMKLI  155 (222)
Q Consensus        90 ~-~v~gvD~~~~~i~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~-----~~~------~~~~~  155 (222)
                      . +|++||.|..+++.|++|++.||++.  +.++++|+.++.......+.+||+|++|||.     ...      ...+.
T Consensus       240 A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~  319 (393)
T COG1092         240 ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLN  319 (393)
T ss_pred             CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHH
Confidence            6 99999999999999999999999853  8999999999998877766799999999991     111      11122


Q ss_pred             H-HHHhCCCCcEEEEeeCccchHhh
Q 043853          156 K-FLLKLKAPRIVYVSCNPATCARD  179 (222)
Q Consensus       156 ~-~l~~l~~~~~v~~~~~~~~~~~~  179 (222)
                      . .+..+.|+|+++++++..-+..+
T Consensus       320 ~~~~~iL~pgG~l~~~s~~~~~~~~  344 (393)
T COG1092         320 DLALRLLAPGGTLVTSSCSRHFSSD  344 (393)
T ss_pred             HHHHHHcCCCCEEEEEecCCccCHH
Confidence            2 22337899999888775544444

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.74  E-value=4.4e-16  Score=129.29  Aligned_cols=137  Identities=19%  Similarity=0.217  Sum_probs=100.4

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHH-HHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIE-DCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISD  104 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~-~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~  104 (222)
                      ..++|..|.+++++|.+ ++. ++.++.... ..+.  ..+..+|||+|||+|.+++.+++..  .+++|+|+|+.+++.
T Consensus        85 ~~f~g~~f~v~~~vlip-r~~-te~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~  160 (284)
T TIGR03533        85 AWFAGLEFYVDERVLIP-RSP-IAELIEDGFAPWLE--PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV  160 (284)
T ss_pred             CeecCcEEEECCCCccC-CCc-hHHHHHHHHHHHhc--cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            56689999999999995 333 333333333 2332  1235689999999999999999764  499999999999999


Q ss_pred             HHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc---------------------------HHHHH
Q 043853          105 ACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH---------------------------MKLIK  156 (222)
Q Consensus       105 a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~---------------------------~~~~~  156 (222)
                      |++|++.+++. +++++++|+.+...     ...||+|++|||+....                           ..++.
T Consensus       161 A~~n~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~  235 (284)
T TIGR03533       161 AEINIERHGLEDRVTLIQSDLFAALP-----GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILA  235 (284)
T ss_pred             HHHHHHHcCCCCcEEEEECchhhccC-----CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHH
Confidence            99999999985 59999999865432     13799999999953210                           12222


Q ss_pred             HH-HhCCCCcEEEEeeCc
Q 043853          157 FL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       157 ~l-~~l~~~~~v~~~~~~  173 (222)
                      .+ ..++++|.+++..+.
T Consensus       236 ~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       236 EAADHLNENGVLVVEVGN  253 (284)
T ss_pred             HHHHhcCCCCEEEEEECc
Confidence            22 237899999988875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.72  E-value=6.6e-16  Score=132.52  Aligned_cols=146  Identities=20%  Similarity=0.172  Sum_probs=107.6

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDA  105 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a  105 (222)
                      ..++|..|.++++.+.+  .+.++.+.+.+.+.+.    ++.+|||+|||+|.+++.+++.  ..+++|+|+|+.+++.|
T Consensus       218 ~~F~G~~f~V~p~vLIP--RpeTE~LVe~aL~~l~----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~A  291 (423)
T PRK14966        218 REFYGRRFAVNPNVLIP--RPETEHLVEAVLARLP----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETA  291 (423)
T ss_pred             eeecCcEEEeCCCccCC--CccHHHHHHHhhhccC----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            45789999999999996  5777777777766542    3568999999999999988864  45899999999999999


Q ss_pred             HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------------cHHHHHHH
Q 043853          106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------------HMKLIKFL  158 (222)
Q Consensus       106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------------~~~~~~~l  158 (222)
                      ++|++.++. +++++++|+.+....   ...+||+|++|||+-..                           ...+++.+
T Consensus       292 reNa~~~g~-rV~fi~gDl~e~~l~---~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a  367 (423)
T PRK14966        292 RKNAADLGA-RVEFAHGSWFDTDMP---SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGA  367 (423)
T ss_pred             HHHHHHcCC-cEEEEEcchhccccc---cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHH
Confidence            999998886 699999998664221   11379999999995211                           11222222


Q ss_pred             H-hCCCCcEEEEeeCccchHhhHHHh
Q 043853          159 L-KLKAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       159 ~-~l~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      . .++++|.+++..+......-.+.+
T Consensus       368 ~~~LkpgG~lilEiG~~Q~e~V~~ll  393 (423)
T PRK14966        368 PDRLAEGGFLLLEHGFDQGAAVRGVL  393 (423)
T ss_pred             HHhcCCCcEEEEEECccHHHHHHHHH
Confidence            2 378999988877664444333344

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=9.1e-16  Score=126.88  Aligned_cols=146  Identities=21%  Similarity=0.236  Sum_probs=109.4

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDA  105 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a  105 (222)
                      .+++|+.|.++++.+.|.  +.++.+++.+........  . +|||+|||||.+++.++..++  +|+|+|+|+.+++.|
T Consensus        76 ~~f~gl~~~v~~~vliPr--~dTe~Lve~~l~~~~~~~--~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A  150 (280)
T COG2890          76 AEFGGLRFKVDEGVLIPR--PDTELLVEAALALLLQLD--K-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALA  150 (280)
T ss_pred             CeecceeeeeCCCceecC--CchHHHHHHHHHhhhhcC--C-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHH
Confidence            468999999999999984  567777776553322111  2 799999999999999998876  999999999999999


Q ss_pred             HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------------cHHHHHHH
Q 043853          106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------------HMKLIKFL  158 (222)
Q Consensus       106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------------~~~~~~~l  158 (222)
                      ++|+..+++.++.++++|+.+...      ++||+|++|||+-..                           ...++..+
T Consensus       151 ~~Na~~~~l~~~~~~~~dlf~~~~------~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a  224 (280)
T COG2890         151 RENAERNGLVRVLVVQSDLFEPLR------GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEA  224 (280)
T ss_pred             HHHHHHcCCccEEEEeeecccccC------CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhh
Confidence            999999998667777778766543      389999999993211                           11222222


Q ss_pred             Hh-CCCCcEEEEeeCccchHhhHHHhh
Q 043853          159 LK-LKAPRIVYVSCNPATCARDLDYLC  184 (222)
Q Consensus       159 ~~-l~~~~~v~~~~~~~~~~~~~~~l~  184 (222)
                      .. +++++++++.+...+.....+.+.
T Consensus       225 ~~~l~~~g~l~le~g~~q~~~v~~~~~  251 (280)
T COG2890         225 PDILKPGGVLILEIGLTQGEAVKALFE  251 (280)
T ss_pred             HHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence            22 678899988888766665556554

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.70  E-value=1.2e-15  Score=126.75  Aligned_cols=149  Identities=22%  Similarity=0.239  Sum_probs=108.7

Q ss_pred             eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHH
Q 043853           27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISD  104 (222)
Q Consensus        27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~  104 (222)
                      ...++|..|.++++.|.+.  +.++.+++.+.+.+... .+..+|||+|||+|.+++.++...  .+++|+|+|+.+++.
T Consensus        77 ~~~f~g~~f~v~~~vliPr--~ete~lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~  153 (284)
T TIGR00536        77 SKEFYGLEFFVNEHVLIPR--PETEELVEKALASLISQ-NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV  153 (284)
T ss_pred             cceEcCeEEEECCCCcCCC--CccHHHHHHHHHHhhhc-CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            3567899999999999863  56777777665543211 123689999999999999998764  499999999999999


Q ss_pred             HHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------------cHHHHH
Q 043853          105 ACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------------HMKLIK  156 (222)
Q Consensus       105 a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------------~~~~~~  156 (222)
                      |++|++.+++.+ ++++++|+.+...     ...||+|++|||+...                           ...++.
T Consensus       154 a~~n~~~~~~~~~v~~~~~d~~~~~~-----~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~  228 (284)
T TIGR00536       154 AEENAEKNQLEHRVEFIQSNLFEPLA-----GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIE  228 (284)
T ss_pred             HHHHHHHcCCCCcEEEEECchhccCc-----CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHH
Confidence            999999999865 9999999876432     1379999999994221                           112222


Q ss_pred             HH-HhCCCCcEEEEeeCccchHhhHHHh
Q 043853          157 FL-LKLKAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       157 ~l-~~l~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      .. ..++++|.+++..+........+.+
T Consensus       229 ~a~~~L~~gG~l~~e~g~~q~~~~~~~~  256 (284)
T TIGR00536       229 LAPDYLKPNGFLVCEIGNWQQKSLKELL  256 (284)
T ss_pred             HHHHhccCCCEEEEEECccHHHHHHHHH
Confidence            22 2378999998887764444333334

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.70  E-value=1.3e-15  Score=122.27  Aligned_cols=139  Identities=23%  Similarity=0.226  Sum_probs=108.2

Q ss_pred             CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ..+|||+|||+|.+++.+|.+.  .+++|||+++++.+.|++|++.|+++. ++++++|+.++......  ..||+|++|
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii~N  122 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLIICN  122 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEEeC
Confidence            7899999999999999999873  499999999999999999999999865 99999999998766442  369999999


Q ss_pred             CCCCC--------------------ccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeee
Q 043853          145 PNRPG--------------------MHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       145 pp~~~--------------------~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  203 (222)
                      ||+-.                    ....++..... ++++|.+++.-.++....-+..+.        +.+|....+..
T Consensus       123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~--------~~~~~~k~i~~  194 (248)
T COG4123         123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK--------SYNLEPKRIQF  194 (248)
T ss_pred             CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH--------hcCCCceEEEE
Confidence            99311                    12233333333 789999998888877777777774        56788888877


Q ss_pred             eccCCCCCceeEE
Q 043853          204 VDMFPHTPHIECV  216 (222)
Q Consensus       204 ~~~~p~~~~~~~v  216 (222)
                      +.-.+.....-++
T Consensus       195 V~p~~~k~A~~vL  207 (248)
T COG4123         195 VYPKIGKAANRVL  207 (248)
T ss_pred             ecCCCCCcceEEE
Confidence            7766655543333

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.70  E-value=2.4e-15  Score=125.99  Aligned_cols=139  Identities=18%  Similarity=0.213  Sum_probs=100.8

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDA  105 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a  105 (222)
                      ..++|..|.+++++|.+ ++.....+...+...+...  +..+|||+|||+|.+++.++...  .+++|+|+|+.+++.|
T Consensus        97 ~~F~g~~f~v~~~vlip-r~~te~lv~~~l~~~~~~~--~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A  173 (307)
T PRK11805         97 AWFCGLEFYVDERVLVP-RSPIAELIEDGFAPWLEDP--PVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVA  173 (307)
T ss_pred             ceEcCcEEEECCCCcCC-CCchHHHHHHHHHHHhccC--CCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            56689999999999995 3444333333333233211  13689999999999999998764  4999999999999999


Q ss_pred             HHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc---------------------------HHHHHH
Q 043853          106 CRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH---------------------------MKLIKF  157 (222)
Q Consensus       106 ~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~---------------------------~~~~~~  157 (222)
                      ++|++.+++. +++++++|+.+...     ...||+|++|||+....                           ..++..
T Consensus       174 ~~n~~~~~l~~~i~~~~~D~~~~l~-----~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~  248 (307)
T PRK11805        174 EINIERHGLEDRVTLIESDLFAALP-----GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAE  248 (307)
T ss_pred             HHHHHHhCCCCcEEEEECchhhhCC-----CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHH
Confidence            9999999885 49999999866432     13799999999953210                           122222


Q ss_pred             H-HhCCCCcEEEEeeCcc
Q 043853          158 L-LKLKAPRIVYVSCNPA  174 (222)
Q Consensus       158 l-~~l~~~~~v~~~~~~~  174 (222)
                      . ..++++|.+++.....
T Consensus       249 a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        249 APDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             HHHhcCCCCEEEEEECcC
Confidence            2 2378999999887654

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=8.2e-16  Score=126.48  Aligned_cols=155  Identities=20%  Similarity=0.255  Sum_probs=109.2

Q ss_pred             cCeeEEEcCCccccCCHHHHHHH-HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAEVL-YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRN  108 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n  108 (222)
                      +....+++|+..|.+..+.+..+ ++++.+..    .+++++||+|||||.+++++++.+. +++|+|+||.+++.|++|
T Consensus       129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~----~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eN  204 (300)
T COG2264         129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLL----KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAREN  204 (300)
T ss_pred             CceEEEEccccccCCCCChhHHHHHHHHHHhh----cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHH
Confidence            56778899985555555555555 46665554    3578999999999999999998765 799999999999999999


Q ss_pred             HHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853          109 AKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLCHG  186 (222)
Q Consensus       109 ~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~~~  186 (222)
                      ++.|+++. ++....+..+....     .+||+|++|.= .+....+...+. .++|+|.+++|.--.+....+..-+. 
T Consensus       205 a~~N~v~~~~~~~~~~~~~~~~~-----~~~DvIVANIL-A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~-  277 (300)
T COG2264         205 ARLNGVELLVQAKGFLLLEVPEN-----GPFDVIVANIL-AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYE-  277 (300)
T ss_pred             HHHcCCchhhhcccccchhhccc-----CcccEEEehhh-HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHH-
Confidence            99999974 33444444443321     48999999872 233334444443 37899999999865555555443322 


Q ss_pred             CCCCccCCCeEEeEee
Q 043853          187 VGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       187 ~~~~~~~~~~~~~~~~  202 (222)
                            ..||.+....
T Consensus       278 ------~~gf~v~~~~  287 (300)
T COG2264         278 ------QAGFEVVEVL  287 (300)
T ss_pred             ------hCCCeEeEEE
Confidence                  5677777644

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.69  E-value=3.3e-16  Score=122.87  Aligned_cols=147  Identities=24%  Similarity=0.398  Sum_probs=97.2

Q ss_pred             CCCCccccCceEEEeCCC--ceeeeecCeeEEEcCC-ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH
Q 043853            7 SVGNTSVGEEEYTLYGKS--NITETLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL   83 (222)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~   83 (222)
                      ...+.+...++.+++|+.  ....+++|..|.+|.. .||.+ .-..++ .+ +.+..    .+++.|+|++||.|.+++
T Consensus        45 ~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~-rl~~Er-~R-i~~~v----~~~e~VlD~faGIG~f~l  117 (200)
T PF02475_consen   45 IVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDLSKVYFSP-RLSTER-RR-IANLV----KPGEVVLDMFAGIGPFSL  117 (200)
T ss_dssp             -SBTTTTB--EEEEEES--SEEEEEETTEEEEEETTTS---G-GGHHHH-HH-HHTC------TT-EEEETT-TTTTTHH
T ss_pred             cCCCCcccccEEEEeCCCceEEEEEeCCEEEEEccceEEEcc-ccHHHH-HH-HHhcC----CcceEEEEccCCccHHHH
Confidence            346677788999999998  7778899999999965 44332 222222 22 22221    358899999999999999


Q ss_pred             HHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh
Q 043853           84 TLAR--WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK  160 (222)
Q Consensus        84 ~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~  160 (222)
                      .+|+  .+..|+|+|++|.+++.+++|++.|++++ +.++++|+.++...     ..+|.|+.+.|...  ..+++....
T Consensus       118 ~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~-----~~~drvim~lp~~~--~~fl~~~~~  190 (200)
T PF02475_consen  118 PIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE-----GKFDRVIMNLPESS--LEFLDAALS  190 (200)
T ss_dssp             HHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T-----T-EEEEEE--TSSG--GGGHHHHHH
T ss_pred             HHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc-----cccCEEEECChHHH--HHHHHHHHH
Confidence            9998  56689999999999999999999999987 99999999998752     47999999998543  245555443


Q ss_pred             -CCCCcEE
Q 043853          161 -LKAPRIV  167 (222)
Q Consensus       161 -l~~~~~v  167 (222)
                       ++++|++
T Consensus       191 ~~~~~g~i  198 (200)
T PF02475_consen  191 LLKEGGII  198 (200)
T ss_dssp             HEEEEEEE
T ss_pred             HhcCCcEE
Confidence             4555544

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.68  E-value=5.3e-16  Score=123.91  Aligned_cols=170  Identities=18%  Similarity=0.190  Sum_probs=115.6

Q ss_pred             ceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHH
Q 043853           25 NITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQA  101 (222)
Q Consensus        25 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~  101 (222)
                      .+.+.+.+..|.-.+-.+.+.+.-..+.+...+.+.+...  ++.+|||+|||+|.++..+++...   +|+++|+++.+
T Consensus        37 f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~--~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~  114 (215)
T TIGR00080        37 FVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELK--PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPEL  114 (215)
T ss_pred             hCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCC--CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence            3444444455554555554444334445556666666544  478999999999999999988654   59999999999


Q ss_pred             HHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHH
Q 043853          102 ISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD  181 (222)
Q Consensus       102 i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~  181 (222)
                      ++.|++|++.+++++++++.+|+.+....    ...||+|+++++...+...+   ...++++|.+++....  ....+.
T Consensus       115 ~~~A~~~~~~~g~~~v~~~~~d~~~~~~~----~~~fD~Ii~~~~~~~~~~~~---~~~L~~gG~lv~~~~~--~~~~~~  185 (215)
T TIGR00080       115 AEKAERRLRKLGLDNVIVIVGDGTQGWEP----LAPYDRIYVTAAGPKIPEAL---IDQLKEGGILVMPVGE--YLQVLK  185 (215)
T ss_pred             HHHHHHHHHHCCCCCeEEEECCcccCCcc----cCCCCEEEEcCCcccccHHH---HHhcCcCcEEEEEEcC--CceEEE
Confidence            99999999999998899999999765432    14799999998765554433   3446899998876543  111111


Q ss_pred             HhhccCCCCccCCCeEEeEeeeeccCCCCC
Q 043853          182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTP  211 (222)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~  211 (222)
                      .+.+      ..+.|......++.+.|.+.
T Consensus       186 ~~~~------~~~~~~~~~~~~~~~~pl~~  209 (215)
T TIGR00080       186 RAEK------RGGEIIIKDVEPVAFVPLVG  209 (215)
T ss_pred             EEEE------eCCEEEEEEeeeEEEEeCCC
Confidence            1111      13456667777777777664

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.68  E-value=1.9e-15  Score=134.44  Aligned_cols=150  Identities=16%  Similarity=0.161  Sum_probs=110.1

Q ss_pred             eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcC-------------------C---CCCCCeEEEEecccchhHHH
Q 043853           27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL-------------------R---DDGSEIVLDLFCGTGTIGLT   84 (222)
Q Consensus        27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~-------------------~---~~~~~~vlDlg~G~G~~~~~   84 (222)
                      ...++|+.|.++++.+.|  ++.++.+++++.+.+..                   .   ..+..+|||+|||+|.+++.
T Consensus        78 ~~~F~g~~f~V~~~VLIP--RpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~  155 (506)
T PRK01544         78 VKEFYSREFIVNKHVLIP--RSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAIS  155 (506)
T ss_pred             cCEEcCcEEEeCCCcccC--CCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHH
Confidence            456799999999999998  57888888887665420                   0   11346899999999999998


Q ss_pred             Hhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----------
Q 043853           85 LARW--VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----------  151 (222)
Q Consensus        85 la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----------  151 (222)
                      ++..  ..+++|+|+|+.+++.|++|++.+++. +++++++|+.+...     ...||+|++|||+-...          
T Consensus       156 la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-----~~~fDlIvsNPPYi~~~~~~~l~~~v~  230 (506)
T PRK01544        156 LLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-----KQKFDFIVSNPPYISHSEKSEMAIETI  230 (506)
T ss_pred             HHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-----CCCccEEEECCCCCCchhhhhcCchhh
Confidence            8764  359999999999999999999999875 49999999865332     14799999999842210          


Q ss_pred             ------------------HHHHHHH-HhCCCCcEEEEeeCccchHhhHHHh
Q 043853          152 ------------------MKLIKFL-LKLKAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       152 ------------------~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                                        ..+++.+ ..++++|.+++.........-.+.+
T Consensus       231 ~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~  281 (506)
T PRK01544        231 NYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIF  281 (506)
T ss_pred             ccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHH
Confidence                              1122222 2378999999887665443333344

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.67  E-value=6e-16  Score=120.30  Aligned_cols=140  Identities=23%  Similarity=0.302  Sum_probs=101.9

Q ss_pred             eecCeeEEEcCC-ccccCCHHHHHHHHHHHHHH-hcCCCCCCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHH
Q 043853           29 TLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDC-AGLRDDGSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDA  105 (222)
Q Consensus        29 ~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~-~~~~~~~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a  105 (222)
                      ++.|.++..+.+ .-.|+.....+.+.+++... +     ++.++||++||||.+++ ++++++.+++.||.|+.+++..
T Consensus         7 ~~kgr~l~~p~~~~~RPT~drvrealFniL~~~~~-----~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i   81 (183)
T PF03602_consen    7 KYKGRKLKTPKGDNTRPTTDRVREALFNILQPRNL-----EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKII   81 (183)
T ss_dssp             TTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH-H-----TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHH
T ss_pred             ecCCCEecCCCCCCcCCCcHHHHHHHHHHhccccc-----CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHH
Confidence            467888888875 55666666777777777665 3     37899999999999999 6667778999999999999999


Q ss_pred             HHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-c-HHHHHHHHh---CCCCcEEEEeeCc
Q 043853          106 CRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-H-MKLIKFLLK---LKAPRIVYVSCNP  173 (222)
Q Consensus       106 ~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-~-~~~~~~l~~---l~~~~~v~~~~~~  173 (222)
                      ++|++..+.++ ++++.+|+.............||+|++|||+... . ..+++.+..   +++++++++..+.
T Consensus        82 ~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~  155 (183)
T PF03602_consen   82 KKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK  155 (183)
T ss_dssp             HHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred             HHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence            99999999876 9999999887776553234689999999997643 2 677777763   6788999888755

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.67  E-value=7.2e-16  Score=127.01  Aligned_cols=152  Identities=24%  Similarity=0.317  Sum_probs=102.8

Q ss_pred             ceEEEeCCC--ceeeeecCeeEEEcC-----CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc
Q 043853           16 EEYTLYGKS--NITETLRGLTFQISA-----NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW   88 (222)
Q Consensus        16 ~~~~~~g~~--~~~~~~~~~~~~~~~-----~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~   88 (222)
                      ..+.++|+.  .+...++|+.|.++.     .+||....+.    .+++...+     .+++|||++|-||++++.++.+
T Consensus        74 ~~~~l~G~~~~~~~v~E~gl~f~v~l~~gqktGlFlDqR~n----R~~v~~~~-----~gkrvLnlFsYTGgfsv~Aa~g  144 (286)
T PF10672_consen   74 PSEVLYGEPPEFFTVEENGLKFRVDLTDGQKTGLFLDQREN----RKWVRKYA-----KGKRVLNLFSYTGGFSVAAAAG  144 (286)
T ss_dssp             EEEEEESS-SSEEEEEETTEEEEEESSSSSSTSS-GGGHHH----HHHHHHHC-----TTCEEEEET-TTTHHHHHHHHT
T ss_pred             CceEEecCCCCceEEEECCEEEEEEcCCCCcceEcHHHHhh----HHHHHHHc-----CCCceEEecCCCCHHHHHHHHC
Confidence            345788875  678899999999995     4777643332    34455553     3789999999999999987776


Q ss_pred             CC-eEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCC-----CCCccHH---HHH-
Q 043853           89 VK-HVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPN-----RPGMHMK---LIK-  156 (222)
Q Consensus        89 ~~-~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-----~~~~~~~---~~~-  156 (222)
                      +. +|++||.|..+++.+++|++.|+++  +++++.+|+.++...+.. ..+||+||+|||     +..+...   +.. 
T Consensus       145 GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~-~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~  223 (286)
T PF10672_consen  145 GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK-GGRFDLIILDPPSFAKSKFDLERDYKKLLRR  223 (286)
T ss_dssp             TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH-TT-EEEEEE--SSEESSTCEHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence            54 8999999999999999999999975  599999999998765432 258999999999     1122222   222 


Q ss_pred             HHHhCCCCcEEEEeeCccchH
Q 043853          157 FLLKLKAPRIVYVSCNPATCA  177 (222)
Q Consensus       157 ~l~~l~~~~~v~~~~~~~~~~  177 (222)
                      .+..++++|+++++++...+.
T Consensus       224 a~~ll~~gG~l~~~scs~~i~  244 (286)
T PF10672_consen  224 AMKLLKPGGLLLTCSCSHHIS  244 (286)
T ss_dssp             HHHTEEEEEEEEEEE--TTS-
T ss_pred             HHHhcCCCCEEEEEcCCcccC
Confidence            233368999887666644433

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.65  E-value=1.6e-15  Score=125.68  Aligned_cols=152  Identities=20%  Similarity=0.253  Sum_probs=102.9

Q ss_pred             cCeeEEEcCCccccCCHHHHHHHH-HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAEVLY-KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRN  108 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~~~~-~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n  108 (222)
                      +...+.++|+..|.+..+.+..++ +++....    .++++|||+|||||.++++.++.+. +|+|+|+||.+++.|++|
T Consensus       128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~----~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N  203 (295)
T PF06325_consen  128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV----KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAREN  203 (295)
T ss_dssp             TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS----STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHH
T ss_pred             CcEEEEECCCCcccCCCCHHHHHHHHHHHHhc----cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHH
Confidence            567889999866666666655554 5555553    3468999999999999999888654 899999999999999999


Q ss_pred             HHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853          109 AKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLCHG  186 (222)
Q Consensus       109 ~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~  186 (222)
                      ++.|+++. +.+.  ...+...      .+||+|++|.-..-+ ..+...+ ..++++|.+++|.--.....++...+  
T Consensus       204 ~~~N~~~~~~~v~--~~~~~~~------~~~dlvvANI~~~vL-~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~--  272 (295)
T PF06325_consen  204 AELNGVEDRIEVS--LSEDLVE------GKFDLVVANILADVL-LELAPDIASLLKPGGYLILSGILEEQEDEVIEAY--  272 (295)
T ss_dssp             HHHTT-TTCEEES--CTSCTCC------S-EEEEEEES-HHHH-HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH--
T ss_pred             HHHcCCCeeEEEE--Eeccccc------ccCCEEEECCCHHHH-HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH--
Confidence            99999976 4432  2222221      489999998643222 2233333 33789999998886655555655443  


Q ss_pred             CCCCccCCCeEEeEeee
Q 043853          187 VGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       187 ~~~~~~~~~~~~~~~~~  203 (222)
                            +.||++.....
T Consensus       273 ------~~g~~~~~~~~  283 (295)
T PF06325_consen  273 ------KQGFELVEERE  283 (295)
T ss_dssp             ------HTTEEEEEEEE
T ss_pred             ------HCCCEEEEEEE
Confidence                  23787776543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.65  E-value=1.1e-14  Score=118.61  Aligned_cols=146  Identities=24%  Similarity=0.251  Sum_probs=106.6

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDA  105 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a  105 (222)
                      ..+++..|.+++..|.+.  +.++.+.+.+.+.+.   ..+.+|||+|||+|.++..+++..  .+++|+|+++.+++.|
T Consensus        53 ~~~~~~~~~~~~~~~~p~--~~~~~l~~~~l~~~~---~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a  127 (251)
T TIGR03534        53 REFYGLDFKVSPGVLIPR--PDTEELVEAALERLK---KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVA  127 (251)
T ss_pred             ceEeceEEEECCCcccCC--CChHHHHHHHHHhcc---cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            456788888888888764  345556666665543   234689999999999999998763  4999999999999999


Q ss_pred             HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----------------------------HHHHHH
Q 043853          106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----------------------------MKLIKF  157 (222)
Q Consensus       106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----------------------------~~~~~~  157 (222)
                      ++++..+++++++++++|+.+...     .++||+|++|||+....                            ..+++.
T Consensus       128 ~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~  202 (251)
T TIGR03534       128 RKNAARLGLDNVTFLQSDWFEPLP-----GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ  202 (251)
T ss_pred             HHHHHHcCCCeEEEEECchhccCc-----CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH
Confidence            999999998889999999976432     25799999999954211                            122333


Q ss_pred             H-HhCCCCcEEEEeeCccchHhhHHHh
Q 043853          158 L-LKLKAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       158 l-~~l~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      + +.++++|.+++...........+.+
T Consensus       203 ~~~~L~~gG~~~~~~~~~~~~~~~~~l  229 (251)
T TIGR03534       203 APRLLKPGGWLLLEIGYDQGEAVRALF  229 (251)
T ss_pred             HHHhcccCCEEEEEECccHHHHHHHHH
Confidence            3 3379999999887654443333334

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.4e-14  Score=107.38  Aligned_cols=136  Identities=24%  Similarity=0.236  Sum_probs=95.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCc
Q 043853           45 TNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGD  123 (222)
Q Consensus        45 ~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d  123 (222)
                      +..+.+..++..+...   ..-++..|+|+|||||.+++..+-.+ ..|+|+|+||++++.+++|++..+ .++++..+|
T Consensus        26 Tp~~~Aa~il~~a~~~---g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~d  101 (198)
T COG2263          26 TPAPLAAYILWVAYLR---GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVAD  101 (198)
T ss_pred             CChHHHHHHHHHHHHc---CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcc
Confidence            3445555544333321   11247789999999999999877665 599999999999999999999843 369999999


Q ss_pred             hhchhhhcCCCCCCCcEEEECCC----CCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEe
Q 043853          124 LNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK  199 (222)
Q Consensus       124 ~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  199 (222)
                      +.++..       ++|.++.|||    ++.....+++...+..  .++| +-+.......++.+..       +.|+.+.
T Consensus       102 v~~~~~-------~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s--~vVY-siH~a~~~~f~~~~~~-------~~G~~v~  164 (198)
T COG2263         102 VSDFRG-------KFDTVIMNPPFGSQRRHADRPFLLKALEIS--DVVY-SIHKAGSRDFVEKFAA-------DLGGTVT  164 (198)
T ss_pred             hhhcCC-------ccceEEECCCCccccccCCHHHHHHHHHhh--heEE-EeeccccHHHHHHHHH-------hcCCeEE
Confidence            998753       7999999999    3445667776665444  5666 4444344444555543       5565555


Q ss_pred             Ee
Q 043853          200 SL  201 (222)
Q Consensus       200 ~~  201 (222)
                      ..
T Consensus       165 ~~  166 (198)
T COG2263         165 HI  166 (198)
T ss_pred             EE
Confidence            54

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.63  E-value=7.6e-14  Score=117.06  Aligned_cols=148  Identities=22%  Similarity=0.309  Sum_probs=112.1

Q ss_pred             CCCccccCceEEEeCCC--ceeeeecCeeEEEcCC--ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH
Q 043853            8 VGNTSVGEEEYTLYGKS--NITETLRGLTFQISAN--SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL   83 (222)
Q Consensus         8 ~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~   83 (222)
                      ......-.++++++|+.  .....++|..|.+|..  .|.+.+.....++.++.        .++++|+|.+||.|.+++
T Consensus       133 v~G~~R~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v--------~~GE~V~DmFAGVGpfsi  204 (341)
T COG2520         133 VAGEFRVPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELV--------KEGETVLDMFAGVGPFSI  204 (341)
T ss_pred             cCCeEeccceEEeecCCCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhh--------cCCCEEEEccCCcccchh
Confidence            45666777899999998  4556678999999964  44444444444433332        348999999999999999


Q ss_pred             HHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhC
Q 043853           84 TLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKL  161 (222)
Q Consensus        84 ~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l  161 (222)
                      .+|+.+. .|+|+|+||.+++++++|++.|++.+ +..+++|+.+.....    ..+|-|+.+-|... ..-+..++..+
T Consensus       205 ~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~----~~aDrIim~~p~~a-~~fl~~A~~~~  279 (341)
T COG2520         205 PIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL----GVADRIIMGLPKSA-HEFLPLALELL  279 (341)
T ss_pred             hhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc----ccCCEEEeCCCCcc-hhhHHHHHHHh
Confidence            9998765 59999999999999999999999988 999999999987653    47999999987431 12222334445


Q ss_pred             CCCcEEE
Q 043853          162 KAPRIVY  168 (222)
Q Consensus       162 ~~~~~v~  168 (222)
                      +.++++.
T Consensus       280 k~~g~iH  286 (341)
T COG2520         280 KDGGIIH  286 (341)
T ss_pred             hcCcEEE
Confidence            6677763

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.63  E-value=1.7e-14  Score=112.89  Aligned_cols=140  Identities=15%  Similarity=0.141  Sum_probs=100.4

Q ss_pred             eecCeeEEEcCCccccC-CHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHH
Q 043853           29 TLRGLTFQISANSFFQT-NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDAC  106 (222)
Q Consensus        29 ~~~~~~~~~~~~~f~~~-~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~  106 (222)
                      ++.|..+..+++.+..+ .....+.+..++...+     ++.++||+|||+|.+++.++.++ ..++++|.++.+++.++
T Consensus        15 ~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~~-----~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~   89 (189)
T TIGR00095        15 WRGGRLLKLPPGGSTRPTTRVVRELFFNILRPEI-----QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK   89 (189)
T ss_pred             hhCCcccCCCCCCCCCCchHHHHHHHHHHHHHhc-----CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            35667777666665433 3334445555444332     36899999999999999887654 49999999999999999


Q ss_pred             HHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHHHh---CCCCcEEEEeeCc
Q 043853          107 RNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFLLK---LKAPRIVYVSCNP  173 (222)
Q Consensus       107 ~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~~---l~~~~~v~~~~~~  173 (222)
                      +|++.++++ +++++++|+.++...+......||+|+.|||+. .....+++.+..   +++++++++....
T Consensus        90 ~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095        90 ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            999999986 599999999776543322222589999999964 445556665544   5677877766543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.63  E-value=4.2e-15  Score=106.26  Aligned_cols=100  Identities=29%  Similarity=0.401  Sum_probs=76.2

Q ss_pred             CCeEEEEecccchhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +.+|||+|||+|.+++.+++  .+.+++|+|+||.+++.|++++...+. ++++++++|+ ......   .++||+|+++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~---~~~~D~v~~~   77 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF---LEPFDLVICS   77 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT---SSCEEEEEEC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc---CCCCCEEEEC
Confidence            67999999999999999998  677999999999999999999966655 4699999999 332222   2479999998


Q ss_pred             C-CCCCcc-----HHHHHHH-HhCCCCcEEEEee
Q 043853          145 P-NRPGMH-----MKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       145 p-p~~~~~-----~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      . ....+.     ..+++.+ ..++|+|.++++.
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            7 211122     2334444 3478999988764

...

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.62  E-value=4.7e-14  Score=120.75  Aligned_cols=132  Identities=20%  Similarity=0.181  Sum_probs=94.9

Q ss_pred             CeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHH
Q 043853           32 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNA  109 (222)
Q Consensus        32 ~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~  109 (222)
                      +..+.-.++.|.....+.-.++   +.+.+...  ...+|||+|||+|.+++.+++..  .+++++|+|+.+++.|++|+
T Consensus       198 ~~~~~~~~gVFs~~~LD~Gtrl---lL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~  272 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARF---FMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV  272 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHH---HHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            4555556899998766644332   33333222  24689999999999999998865  48999999999999999999


Q ss_pred             HHcCCC---cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-C------ccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          110 KLNNIS---NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-G------MHMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       110 ~~~~~~---~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~------~~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                      +.++.+   ++++..+|..+...     ...||+|++|||.. +      ...+++... +.++++|.+++..+.
T Consensus       273 ~~n~~~~~~~v~~~~~D~l~~~~-----~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr  342 (378)
T PRK15001        273 ETNMPEALDRCEFMINNALSGVE-----PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  342 (378)
T ss_pred             HHcCcccCceEEEEEccccccCC-----CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence            988753   58999999865332     13799999999942 1      112333333 348999999988653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.61  E-value=4.5e-14  Score=108.07  Aligned_cols=130  Identities=22%  Similarity=0.203  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN  125 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~  125 (222)
                      ++++.-++. ..+..+.+.+++.++|+|||||++++.++..+  .+++++|.++++++..++|++.+|++|++++.+|+.
T Consensus        16 p~TK~EIRa-l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap   94 (187)
T COG2242          16 PMTKEEIRA-LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP   94 (187)
T ss_pred             CCcHHHHHH-HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch
Confidence            344443332 23334445568999999999999999888544  499999999999999999999999999999999999


Q ss_pred             chhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh-CCCCcEEEEee-CccchHhhHHHhh
Q 043853          126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSC-NPATCARDLDYLC  184 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~-~~~~~~~~~~~l~  184 (222)
                      +.+..+    ..||.||..-- .+ ...+++.+.. ++++|.+.... ..++....++.+.
T Consensus        95 ~~L~~~----~~~daiFIGGg-~~-i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~  149 (187)
T COG2242          95 EALPDL----PSPDAIFIGGG-GN-IEEILEAAWERLKPGGRLVANAITLETLAKALEALE  149 (187)
T ss_pred             HhhcCC----CCCCEEEECCC-CC-HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence            887643    26999999876 33 4666666544 78888877665 3455555666664

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.61  E-value=3.3e-14  Score=109.36  Aligned_cols=140  Identities=24%  Similarity=0.316  Sum_probs=108.8

Q ss_pred             eecCeeEEEcCC-ccccCCHHHHHHHHHHHHHH-hcCCCCCCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHH
Q 043853           29 TLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDC-AGLRDDGSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDA  105 (222)
Q Consensus        29 ~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~-~~~~~~~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a  105 (222)
                      ++.|.++.++++ +..|+.....+.+.+++... +     ++.++||+++|||.+++ ++++++..++.+|.|..+++.+
T Consensus         8 ~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i-----~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l   82 (187)
T COG0742           8 KYKGRKLKTPDGPGTRPTTDRVREALFNILAPDEI-----EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKIL   82 (187)
T ss_pred             cccCCcccCCCCCCcCCCchHHHHHHHHhcccccc-----CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHH
Confidence            467888888875 66777667788777777652 3     47899999999999999 6667788999999999999999


Q ss_pred             HHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHHH-----hCCCCcEEEEeeCcc
Q 043853          106 CRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFLL-----KLKAPRIVYVSCNPA  174 (222)
Q Consensus       106 ~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~-----~l~~~~~v~~~~~~~  174 (222)
                      ++|++..++. +++++..|+..+....... +.||+|++|||+. ++.......+.     .+++++++|+..+..
T Consensus        83 ~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742          83 KENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            9999999865 4999999999776655432 2599999999966 44432333322     278999999888764

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.61  E-value=4.9e-14  Score=116.43  Aligned_cols=140  Identities=25%  Similarity=0.264  Sum_probs=102.5

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDA  105 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a  105 (222)
                      ..+++..|.++++.+.+  .+.++.+.+++......  .++.+|||+|||+|.+++.++...  .+++|+|+|+.+++.|
T Consensus        73 ~~f~~~~~~~~~~~lip--r~~te~l~~~~~~~~~~--~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a  148 (275)
T PRK09328         73 AEFWGLDFKVSPGVLIP--RPETEELVEWALEALLL--KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVA  148 (275)
T ss_pred             ceEcCcEEEECCCceeC--CCCcHHHHHHHHHhccc--cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            45788899999998876  35566677766644332  236789999999999999998765  5999999999999999


Q ss_pred             HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----------------------------HHHHHH
Q 043853          106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----------------------------MKLIKF  157 (222)
Q Consensus       106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----------------------------~~~~~~  157 (222)
                      ++|+......+++++++|+.+...     .+.||+|++|||+....                            ..+++.
T Consensus       149 ~~n~~~~~~~~i~~~~~d~~~~~~-----~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~  223 (275)
T PRK09328        149 RRNAKHGLGARVEFLQGDWFEPLP-----GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ  223 (275)
T ss_pred             HHHHHhCCCCcEEEEEccccCcCC-----CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH
Confidence            999983333469999999865432     24799999999943211                            112222


Q ss_pred             H-HhCCCCcEEEEeeCccch
Q 043853          158 L-LKLKAPRIVYVSCNPATC  176 (222)
Q Consensus       158 l-~~l~~~~~v~~~~~~~~~  176 (222)
                      + ..++++|.+++..+....
T Consensus       224 ~~~~Lk~gG~l~~e~g~~~~  243 (275)
T PRK09328        224 APRYLKPGGWLLLEIGYDQG  243 (275)
T ss_pred             HHHhcccCCEEEEEECchHH
Confidence            2 347899999988765433

>PRK14967 putative methyltransferase; Provisional

Probab=99.61  E-value=7.9e-14  Score=112.00  Aligned_cols=143  Identities=20%  Similarity=0.213  Sum_probs=98.4

Q ss_pred             ecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHH
Q 043853           30 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRN  108 (222)
Q Consensus        30 ~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n  108 (222)
                      +.+..+..+++.|.+..  .++.+.+++... ..  .++.+|||+|||+|.+++.+++.+. +++++|+|+.+++.+++|
T Consensus         4 ~~~~~~~~~~g~~~p~~--ds~~l~~~l~~~-~~--~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n   78 (223)
T PRK14967          4 TPPDALLRAPGVYRPQE--DTQLLADALAAE-GL--GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLN   78 (223)
T ss_pred             CCCceeecCCCCcCCCC--cHHHHHHHHHhc-cc--CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence            34566777788887643  334444444332 22  2467999999999999998887654 999999999999999999


Q ss_pred             HHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-----------------------cHHHHHH-HHhCCCC
Q 043853          109 AKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-----------------------HMKLIKF-LLKLKAP  164 (222)
Q Consensus       109 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-----------------------~~~~~~~-l~~l~~~  164 (222)
                      ++.++. +++++++|+.+...     .+.||+|++|||+...                       ...+++. ...++++
T Consensus        79 ~~~~~~-~~~~~~~d~~~~~~-----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g  152 (223)
T PRK14967         79 ALLAGV-DVDVRRGDWARAVE-----FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG  152 (223)
T ss_pred             HHHhCC-eeEEEECchhhhcc-----CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence            998887 58899999876432     2479999999984311                       1223333 3448899


Q ss_pred             cEEEEeeCcc-chHhhHHHh
Q 043853          165 RIVYVSCNPA-TCARDLDYL  183 (222)
Q Consensus       165 ~~v~~~~~~~-~~~~~~~~l  183 (222)
                      |.+++..... .....+..+
T Consensus       153 G~l~~~~~~~~~~~~~~~~l  172 (223)
T PRK14967        153 GSLLLVQSELSGVERTLTRL  172 (223)
T ss_pred             cEEEEEEecccCHHHHHHHH
Confidence            9887654332 333344444

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.60  E-value=5.4e-14  Score=109.18  Aligned_cols=123  Identities=23%  Similarity=0.236  Sum_probs=90.7

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++|++.++. ++++..+|+.+...      +.||+|+++||.
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~------~~fD~Vi~n~p~   92 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVR------GKFDVILFNPPY   92 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccC------CcccEEEECCCC
Confidence            57899999999999999998777999999999999999999998887 58999999876432      379999999984


Q ss_pred             CCc-----------------------cHHHHHHH-HhCCCCcEEEEeeCccc-hHhhHHHhhccCCCCccCCCeEEeEee
Q 043853          148 PGM-----------------------HMKLIKFL-LKLKAPRIVYVSCNPAT-CARDLDYLCHGVGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       148 ~~~-----------------------~~~~~~~l-~~l~~~~~v~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~  202 (222)
                      ...                       ...+++.+ +.++++|.+++...... ....+..+.        +.||..+...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~--------~~gf~~~~~~  164 (179)
T TIGR00537        93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLD--------ERGFRYEIVA  164 (179)
T ss_pred             CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHH--------hCCCeEEEEE
Confidence            211                       12233333 33789888776654444 333344443        5678777766


Q ss_pred             eec
Q 043853          203 PVD  205 (222)
Q Consensus       203 ~~~  205 (222)
                      ...
T Consensus       165 ~~~  167 (179)
T TIGR00537       165 ERG  167 (179)
T ss_pred             Eee
Confidence            544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=6.5e-14  Score=114.78  Aligned_cols=131  Identities=25%  Similarity=0.329  Sum_probs=99.5

Q ss_pred             cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRN  108 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n  108 (222)
                      .+.+|.-.++.|.....+.-.+   ++.+.+....  ..+|||+|||.|.+++.+++..+  +++-+|+|..+++.||+|
T Consensus       127 ~~~~~~t~pGVFS~~~lD~GS~---lLl~~l~~~~--~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N  201 (300)
T COG2813         127 HELTFKTLPGVFSRDKLDKGSR---LLLETLPPDL--GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN  201 (300)
T ss_pred             CceEEEeCCCCCcCCCcChHHH---HHHHhCCccC--CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh
Confidence            4677888899999876664443   3444443332  44999999999999999999876  999999999999999999


Q ss_pred             HHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-CCC--ccH----HHHHH-HHhCCCCcEEEEeeC
Q 043853          109 AKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-RPG--MHM----KLIKF-LLKLKAPRIVYVSCN  172 (222)
Q Consensus       109 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-~~~--~~~----~~~~~-l~~l~~~~~v~~~~~  172 (222)
                      +..|++++.++...|..+-..      ++||+|++||| +.+  ...    +++.. ...|+++|-+++-.+
T Consensus       202 l~~N~~~~~~v~~s~~~~~v~------~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         202 LAANGVENTEVWASNLYEPVE------GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             HHHcCCCccEEEEeccccccc------ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            999999877788888876543      37999999999 222  112    33333 344899998887776

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.60  E-value=4.3e-14  Score=109.87  Aligned_cols=126  Identities=14%  Similarity=0.058  Sum_probs=90.3

Q ss_pred             CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +.+|||+|||+|.+++.++...  .+++|+|.|+.+++.++++++.+++++++++++|+.++..     .+.||+|+++.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-----~~~fD~I~s~~  117 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-----EEQFDVITSRA  117 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-----cCCccEEEehh
Confidence            6899999999999999887654  4899999999999999999999998789999999988532     24899999986


Q ss_pred             CCCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeec
Q 043853          146 NRPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVD  205 (222)
Q Consensus       146 p~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  205 (222)
                       ... ...+.+.+.. ++++|.+++...+.....-.... +..    .--|++.....+.+
T Consensus       118 -~~~-~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~-e~~----~~~~~~~~~~~~~~  171 (181)
T TIGR00138       118 -LAS-LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAK-RKC----QVLGVEPLEVPPLT  171 (181)
T ss_pred             -hhC-HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHH-Hhh----hhcCceEeeccccC
Confidence             222 2445555443 79999988776544433322222 100    02366666655544

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.60  E-value=7.2e-14  Score=114.13  Aligned_cols=148  Identities=21%  Similarity=0.293  Sum_probs=99.5

Q ss_pred             cCeeEEEcCCc-cccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHH
Q 043853           31 RGLTFQISANS-FFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRN  108 (222)
Q Consensus        31 ~~~~~~~~~~~-f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n  108 (222)
                      +...+.++++. |....++.+...++.+....    .++.+|||+|||+|.+++.+++.+. +++|+|+|+.+++.|++|
T Consensus        86 ~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~----~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n  161 (250)
T PRK00517         86 DEINIELDPGMAFGTGTHPTTRLCLEALEKLV----LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN  161 (250)
T ss_pred             CeEEEEECCCCccCCCCCHHHHHHHHHHHhhc----CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence            44567788874 44444445555555555432    2478999999999999998877655 699999999999999999


Q ss_pred             HHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHH-HHhCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853          109 AKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKF-LLKLKAPRIVYVSCNPATCARDLDYLCHG  186 (222)
Q Consensus       109 ~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~~~~~~~~~~~~l~~~  186 (222)
                      ++.+++. .+.+..+|.            .||+|++|.....+ ..+... .+.++++|.++++.-......++...+. 
T Consensus       162 ~~~~~~~~~~~~~~~~~------------~fD~Vvani~~~~~-~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~-  227 (250)
T PRK00517        162 AELNGVELNVYLPQGDL------------KADVIVANILANPL-LELAPDLARLLKPGGRLILSGILEEQADEVLEAYE-  227 (250)
T ss_pred             HHHcCCCceEEEccCCC------------CcCEEEEcCcHHHH-HHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHH-
Confidence            9998873 344433321            59999998753322 334433 3448999999988654444444433332 


Q ss_pred             CCCCccCCCeEEeEee
Q 043853          187 VGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       187 ~~~~~~~~~~~~~~~~  202 (222)
                            +.||++....
T Consensus       228 ------~~Gf~~~~~~  237 (250)
T PRK00517        228 ------EAGFTLDEVL  237 (250)
T ss_pred             ------HCCCEEEEEE
Confidence                  5677776543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.59  E-value=9e-15  Score=105.41  Aligned_cols=102  Identities=24%  Similarity=0.307  Sum_probs=78.8

Q ss_pred             CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +.+|||+|||+|.+++.+++.+ .+++|+|++|.+++.|+.|+..++.+ +++++++|+.+......  .++||+|++||
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence            3589999999999999888877 79999999999999999999999884 59999999988874332  35899999999


Q ss_pred             CCCCc----------cHHHHHHH-HhCCCCcEEEEee
Q 043853          146 NRPGM----------HMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       146 p~~~~----------~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      |+...          ...+++.+ +.++++|.+++..
T Consensus        79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            95432          23444444 3478888876543

...

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.59  E-value=4.8e-14  Score=111.57  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=89.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCch-hchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|..+..+++..  .+++|+|+|+.+++.|++++..++.++++++++|+ ..+...+.  ...||.|++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~--~~~~D~V~~  117 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYL  117 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC--ccccceEEE
Confidence            46899999999999999988754  48999999999999999999998888899999999 55432221  247999998


Q ss_pred             CCCCCC----------ccHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhh
Q 043853          144 DPNRPG----------MHMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLC  184 (222)
Q Consensus       144 ~pp~~~----------~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~  184 (222)
                      +.|...          ....+++.+. .++|+|.+++.++......++....
T Consensus       118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~  169 (202)
T PRK00121        118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVL  169 (202)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH
Confidence            754211          1355666654 4899999999988777776655444

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.58  E-value=8.8e-14  Score=115.83  Aligned_cols=141  Identities=22%  Similarity=0.250  Sum_probs=99.3

Q ss_pred             cCeeEEEcCCccccCCHHHHHHHH-HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAEVLY-KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRN  108 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~~~~-~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n  108 (222)
                      +...+.++++..|.+..+.+..++ +++....    .++.+|||+|||+|.+++.+++.+ .+++|+|+|+.+++.|++|
T Consensus       126 ~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~----~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n  201 (288)
T TIGR00406       126 DALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD----LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN  201 (288)
T ss_pred             CcEEEEECCCCcccCCCCHHHHHHHHHHHhhc----CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence            557788888877766555555443 4333332    246899999999999999888764 4899999999999999999


Q ss_pred             HHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCccchHhhHHH
Q 043853          109 AKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDY  182 (222)
Q Consensus       109 ~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~  182 (222)
                      +..+++.. +.+..++.....      .+.||+|++|.....+ ..++..+ +.++|+|.++++.-......++..
T Consensus       202 ~~~n~~~~~~~~~~~~~~~~~------~~~fDlVvan~~~~~l-~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~  270 (288)
T TIGR00406       202 AELNQVSDRLQVKLIYLEQPI------EGKADVIVANILAEVI-KELYPQFSRLVKPGGWLILSGILETQAQSVCD  270 (288)
T ss_pred             HHHcCCCcceEEEeccccccc------CCCceEEEEecCHHHH-HHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence            99998864 677777633221      1479999998753322 2344433 448999999988754444444443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.58  E-value=1.1e-13  Score=108.11  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=82.3

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  131 (222)
                      ...+.+.+...  ++.+|||+|||+|.+++.+++..  .+++++|+|+.+++.|++|++.+++++++++++|+....   
T Consensus        20 r~~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~---   94 (187)
T PRK08287         20 RALALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL---   94 (187)
T ss_pred             HHHHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc---
Confidence            33444554433  47899999999999999888764  489999999999999999999988878999999974321   


Q ss_pred             CCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          132 GNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .   +.||+|+++.....+ ..+++.+ ..++++|.+++..
T Consensus        95 ~---~~~D~v~~~~~~~~~-~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         95 P---GKADAIFIGGSGGNL-TAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             C---cCCCEEEECCCccCH-HHHHHHHHHhcCCCeEEEEEE
Confidence            1   379999997653333 4455543 4589999987754

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.58  E-value=2.4e-14  Score=108.17  Aligned_cols=104  Identities=29%  Similarity=0.382  Sum_probs=81.0

Q ss_pred             CCCeEEEEecccchhHHHHhh-c--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLAR-W--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~-~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.++..+++ .  ..+++|+|+|+.+++.|+++++.++.++++++++|+.++...+.   +.||+|++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~---~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE---EKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS---TTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC---CCeeEEEE
Confidence            478999999999999999994 3  45999999999999999999999999899999999999542211   48999999


Q ss_pred             CCCC--CCccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          144 DPNR--PGMHMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       144 ~pp~--~~~~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                      +.+.  ......+++.+ +.++++|.+++....
T Consensus        80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9763  22233455554 447888888766543

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.57  E-value=2.2e-13  Score=106.32  Aligned_cols=135  Identities=21%  Similarity=0.162  Sum_probs=95.5

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|..++.+++.  ..+++|+|.++.+++.|+++++.+++++++++++|+.++..     .++||+|+++
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-----~~~fDlV~~~  119 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-----EEKFDVVTSR  119 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-----CCCccEEEEc
Confidence            3789999999999999988763  45999999999999999999999999889999999988643     2479999997


Q ss_pred             CCCCCccHHHHHHH-HhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeecc--CCCCCceeEE
Q 043853          145 PNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDM--FPHTPHIECV  216 (222)
Q Consensus       145 pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~v  216 (222)
                      .- .. ...+.+.+ +.++|+|.+++..... ....+..+.+       ..||.+...-.+..  ....+|+.++
T Consensus       120 ~~-~~-~~~~l~~~~~~LkpGG~lv~~~~~~-~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (187)
T PRK00107        120 AV-AS-LSDLVELCLPLLKPGGRFLALKGRD-PEEEIAELPK-------ALGGKVEEVIELTLPGLDGERHLVII  184 (187)
T ss_pred             cc-cC-HHHHHHHHHHhcCCCeEEEEEeCCC-hHHHHHHHHH-------hcCceEeeeEEEecCCCCCcEEEEEE
Confidence            42 22 34555554 4589999988765443 3333443332       44776665444331  2234455443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.56  E-value=1.7e-13  Score=108.07  Aligned_cols=114  Identities=20%  Similarity=0.264  Sum_probs=84.3

Q ss_pred             CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++.+|||+|||+|.+++.+++.   ..+++++|+++.+++.|++|++.+++ ++++++.+|..+......   +.||.|
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~---~~~D~V  115 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN---EKFDRI  115 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC---CCCCEE
Confidence            35789999999999999988763   34899999999999999999999985 569999999987644321   479999


Q ss_pred             EECCCCCCccHHHHHHH-HhCCCCcEEEEee-CccchHhhHHHh
Q 043853          142 ISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC-NPATCARDLDYL  183 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~-~~~~~~~~~~~l  183 (222)
                      +++.....+ ..+++.+ ..++|+|.++++. ...+.......+
T Consensus       116 ~~~~~~~~~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l  158 (198)
T PRK00377        116 FIGGGSEKL-KEIISASWEIIKKGGRIVIDAILLETVNNALSAL  158 (198)
T ss_pred             EECCCcccH-HHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHH
Confidence            997643333 4455544 4478988877644 333434444444

>PLN02672 methionine S-methyltransferase

Probab=99.55  E-value=2.3e-13  Score=128.67  Aligned_cols=114  Identities=22%  Similarity=0.255  Sum_probs=88.7

Q ss_pred             eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHH
Q 043853           27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISD  104 (222)
Q Consensus        27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~  104 (222)
                      ...++|+.|.+.++.|.|.  +.++.+++.+..... ..-++.+|||+|||+|.+++.+++..  .+++|+|+|+.+++.
T Consensus        81 ~~~F~~l~~~V~p~VLIPR--peTE~lve~L~~~~~-~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~  157 (1082)
T PLN02672         81 FRNRKKLTMMEIPSIFIPE--DWSFTFYEGLNRHPD-SIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV  157 (1082)
T ss_pred             eEEecCCceeeCCCcccCc--hhHHHHHHHHHhccc-ccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            3478999999999999984  677777776432210 00024689999999999999998764  489999999999999


Q ss_pred             HHHHHHHcCC----------------CcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853          105 ACRNAKLNNI----------------SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus       105 a~~n~~~~~~----------------~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      |++|++.|++                ++++++++|+.+.....   ..+||+|++|||
T Consensus       158 A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~---~~~fDlIVSNPP  212 (1082)
T PLN02672        158 AWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN---NIELDRIVGCIP  212 (1082)
T ss_pred             HHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc---CCceEEEEECCC
Confidence            9999998753                25999999998764321   126999999999

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.55  E-value=1.3e-13  Score=116.91  Aligned_cols=118  Identities=19%  Similarity=0.227  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI  127 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~  127 (222)
                      .+.+.+...+..+....  ++..|||+|||+|++++.++..+.+++|+|+|+.|++.|+.|++..+++++++.++|+.++
T Consensus       165 ~l~~~la~~~~~l~~~~--~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l  242 (329)
T TIGR01177       165 SMDPKLARAMVNLARVT--EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL  242 (329)
T ss_pred             CCCHHHHHHHHHHhCCC--CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC
Confidence            34555566666655443  4789999999999999988877889999999999999999999999998889999999886


Q ss_pred             hhhcCCCCCCCcEEEECCCCCC-----------ccHHHHHHHHh-CCCCcEEEEee
Q 043853          128 GGDFGNAFPKPDIVISDPNRPG-----------MHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~pp~~~-----------~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      +..    .+.||+|++|||+..           +...+++.+.+ ++++|.+.+..
T Consensus       243 ~~~----~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       243 PLS----SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV  294 (329)
T ss_pred             Ccc----cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence            542    247999999999421           12344444443 78888765444

This family is found exclusively in the Archaea.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.55  E-value=1.9e-13  Score=107.55  Aligned_cols=116  Identities=18%  Similarity=0.220  Sum_probs=90.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..++||+|||+|.++..+++..+  +++|+|+++.+++.|++++...+++|++++++|+.+++.... +...+|.|+++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-PDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-CCCceeEEEEE
Confidence            467999999999999999998654  899999999999999999999998899999999988654322 22479999998


Q ss_pred             CCCC----------CccHHHHHHHHh-CCCCcEEEEeeCccchHhhH-HHh
Q 043853          145 PNRP----------GMHMKLIKFLLK-LKAPRIVYVSCNPATCARDL-DYL  183 (222)
Q Consensus       145 pp~~----------~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~-~~l  183 (222)
                      +|..          -....+++.+.+ |+++|.+++.++.......+ +.+
T Consensus        95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~  145 (194)
T TIGR00091        95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVL  145 (194)
T ss_pred             CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Confidence            6521          122456666544 89999999998877655554 444

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.55  E-value=1.9e-13  Score=116.04  Aligned_cols=130  Identities=20%  Similarity=0.247  Sum_probs=95.3

Q ss_pred             cCeeEEEcCCccccCCHHHHH-HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAE-VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACR  107 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~-~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~  107 (222)
                      .++.+...+++|.+.+..... .+.+.+    ...  ...+|||+|||+|.+++.+++..+  +++++|+|+.+++.|++
T Consensus       165 ~~l~i~~~pgvFs~~~lD~gt~lLl~~l----~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~  238 (342)
T PRK09489        165 DGLTVKTLPGVFSRDGLDVGSQLLLSTL----TPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRA  238 (342)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHhc----ccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            466788889999998765443 333322    111  245899999999999999988654  89999999999999999


Q ss_pred             HHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-Cc------cHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GM------HMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       108 n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~------~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                      |++.++++ .+++.+|..+..      .+.||+|++|||.. +.      ...++... +.++++|.+++..+.
T Consensus       239 nl~~n~l~-~~~~~~D~~~~~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        239 TLAANGLE-GEVFASNVFSDI------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             HHHHcCCC-CEEEEccccccc------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            99999875 677888875532      14799999999942 11      13444433 348999998877754

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.54  E-value=4.5e-13  Score=97.14  Aligned_cols=110  Identities=26%  Similarity=0.372  Sum_probs=82.3

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      ..+.+.+...  ++.+|||+|||+|.++..+++..  .+++++|.++.+++.++++++.++.++++++.+|+....... 
T Consensus         9 ~~~~~~~~~~--~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (124)
T TIGR02469         9 ALTLSKLRLR--PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-   85 (124)
T ss_pred             HHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-
Confidence            3344444332  36799999999999999998764  489999999999999999999988878999999976533221 


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEe
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                        .++||+|++..+.... ..+++.+ +.++++|.++++
T Consensus        86 --~~~~D~v~~~~~~~~~-~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        86 --LPEPDRVFIGGSGGLL-QEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             --cCCCCEEEECCcchhH-HHHHHHHHHHcCCCCEEEEE
Confidence              1479999998653333 3445544 448999998865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.53  E-value=1.2e-13  Score=115.13  Aligned_cols=160  Identities=18%  Similarity=0.209  Sum_probs=115.7

Q ss_pred             ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEE
Q 043853           41 SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV  120 (222)
Q Consensus        41 ~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~  120 (222)
                      .|+.+ ..+.+++.+.+.++.....  ++.|||.+||||++.+.+...+.+++|+|++..|++.|+.|++..++++..+.
T Consensus       174 Pf~~p-~s~~P~lAR~mVNLa~v~~--G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~  250 (347)
T COG1041         174 PFFRP-GSMDPRLARAMVNLARVKR--GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVL  250 (347)
T ss_pred             CccCc-CCcCHHHHHHHHHHhcccc--CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEE
Confidence            55554 5677778888888877665  88999999999999999998899999999999999999999999999887667


Q ss_pred             eC-chhchhhhcCCCCCCCcEEEECCCCC-----------CccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccC
Q 043853          121 QG-DLNKIGGDFGNAFPKPDIVISDPNRP-----------GMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGV  187 (222)
Q Consensus       121 ~~-d~~~~~~~~~~~~~~fD~ii~~pp~~-----------~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~  187 (222)
                      .. |+...+.  .  .+.+|.|++|||+.           .+..++++.+.. ++++|.+.+....    .....+.   
T Consensus       251 ~~~Da~~lpl--~--~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~---  319 (347)
T COG1041         251 KVLDATNLPL--R--DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR----DPRHELE---  319 (347)
T ss_pred             EecccccCCC--C--CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC----cchhhHh---
Confidence            66 9988873  2  23699999999931           123455555544 6777765545441    1222221   


Q ss_pred             CCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                           +.+|++..  .+.++-|.+--..|.++++
T Consensus       320 -----~~~f~v~~--~~~~~~H~sLtR~i~v~~~  346 (347)
T COG1041         320 -----ELGFKVLG--RFTMRVHGSLTRVIYVVRK  346 (347)
T ss_pred             -----hcCceEEE--EEEEeecCceEEEEEEEec
Confidence                 45677766  4455566665555555553

>PRK14968 putative methyltransferase; Provisional

Probab=99.52  E-value=7.9e-13  Score=102.95  Aligned_cols=125  Identities=22%  Similarity=0.236  Sum_probs=89.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.++||+|||+|.++..+++...+++|+|+|+.+++.+++++..++..+  +.++++|+.+....     ..||+|++|
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~d~vi~n   97 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG-----DKFDVILFN   97 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc-----cCceEEEEC
Confidence            46799999999999999998888899999999999999999999888765  88999998664321     379999999


Q ss_pred             CCCCCc-----------------------cHHHHHHH-HhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeE
Q 043853          145 PNRPGM-----------------------HMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS  200 (222)
Q Consensus       145 pp~~~~-----------------------~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  200 (222)
                      ||....                       ...+++.+ ..++++|.+++.........++..+..       +.||++..
T Consensus        98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~-------~~g~~~~~  170 (188)
T PRK14968         98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLE-------KLGFEAEV  170 (188)
T ss_pred             CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHH-------HCCCeeee
Confidence            984220                       12233333 447888877655433222333443332       56787766


Q ss_pred             eee
Q 043853          201 LQP  203 (222)
Q Consensus       201 ~~~  203 (222)
                      ...
T Consensus       171 ~~~  173 (188)
T PRK14968        171 VAE  173 (188)
T ss_pred             eee
Confidence            554

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.52  E-value=6e-13  Score=106.78  Aligned_cols=114  Identities=21%  Similarity=0.227  Sum_probs=90.3

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhc-CCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG-LRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISD  104 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~-~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~  104 (222)
                      +.+.++.+...++.|.+  .+.++++++++.+... .....+..++|+|||+|.+++.++..-  ..++|+|.|+.++..
T Consensus       110 ~~F~~l~l~~~pgVlIP--RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L  187 (328)
T KOG2904|consen  110 QPFGDLDLVCKPGVLIP--RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL  187 (328)
T ss_pred             CccCCceEEecCCeeec--CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH
Confidence            45678899999999998  5789999999888764 222235689999999999999887653  389999999999999


Q ss_pred             HHHHHHHcCCCc-EEEEe----CchhchhhhcCCCCCCCcEEEECCC
Q 043853          105 ACRNAKLNNISN-ATFVQ----GDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus       105 a~~n~~~~~~~~-v~~~~----~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      |.+|++.+++.+ +.+++    .|+.+-...   ..++.|++++|||
T Consensus       188 a~eN~qr~~l~g~i~v~~~~me~d~~~~~~l---~~~~~dllvsNPP  231 (328)
T KOG2904|consen  188 AKENAQRLKLSGRIEVIHNIMESDASDEHPL---LEGKIDLLVSNPP  231 (328)
T ss_pred             HHHHHHHHhhcCceEEEeccccccccccccc---ccCceeEEecCCC
Confidence            999999999986 77774    444332221   2358999999999

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.51  E-value=2e-13  Score=108.32  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=83.1

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGG  129 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~  129 (222)
                      ...+.+.+...  ++.+|||+|||+|..+..+++..   .+++++|+++.+++.|++|++.++.++ ++++.+|+.+...
T Consensus        61 ~~~~~~~l~~~--~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~  138 (205)
T PRK13944         61 VAMMCELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE  138 (205)
T ss_pred             HHHHHHhcCCC--CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence            34444544433  47899999999999999888653   599999999999999999999998864 9999999976543


Q ss_pred             hcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853          130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      .    ...||.|+++.....+..   +....++++|.+++...
T Consensus       139 ~----~~~fD~Ii~~~~~~~~~~---~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        139 K----HAPFDAIIVTAAASTIPS---ALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             c----CCCccEEEEccCcchhhH---HHHHhcCcCcEEEEEEc
Confidence            2    247999999876443333   23345799999887653

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.51  E-value=7.6e-14  Score=105.67  Aligned_cols=104  Identities=25%  Similarity=0.399  Sum_probs=71.1

Q ss_pred             CeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.|+|++||.|+.++.+|+.+.+|+++|+||..++.|++|++-.|+. +++++++|+.+....+... ..+|+|+++||+
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~-~~~D~vFlSPPW   79 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSN-KIFDVVFLSPPW   79 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE---B
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccc-ccccEEEECCCC
Confidence            37999999999999999999999999999999999999999999976 5999999999987654321 128999999994


Q ss_pred             CCc------------------cHHHHHHHHhCCCCcEEEEeeCc
Q 043853          148 PGM------------------HMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       148 ~~~------------------~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      .+.                  ..++.+....+.+.-++|+--+.
T Consensus        80 GGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~  123 (163)
T PF09445_consen   80 GGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNS  123 (163)
T ss_dssp             SSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB
T ss_pred             CCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCC
Confidence            331                  12444444456666667766544

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.51  E-value=3.7e-13  Score=108.02  Aligned_cols=99  Identities=26%  Similarity=0.313  Sum_probs=79.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||||-+++.+++..  .+|+|+|+|+.|++.|++.+...+..+++++++|+++++.    +++.||++.+.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf----~D~sFD~vt~~  126 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF----PDNSFDAVTIS  126 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC----CCCccCEEEee
Confidence            48999999999999999999876  5999999999999999999998888779999999999986    35689999876


Q ss_pred             CC---CCCccHHHHHHHHhCCCCcEEEE
Q 043853          145 PN---RPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       145 pp---~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      --   -......+.+..+.++|+|.+.+
T Consensus       127 fglrnv~d~~~aL~E~~RVlKpgG~~~v  154 (238)
T COG2226         127 FGLRNVTDIDKALKEMYRVLKPGGRLLV  154 (238)
T ss_pred             ehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence            53   11333333334455899886553

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=5.8e-13  Score=104.11  Aligned_cols=110  Identities=23%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      ...+.+.+...+  +++|||||||+|+.+..+|+...+|+++|..+...+.|++|++..|..||.++++|........  
T Consensus        61 vA~m~~~L~~~~--g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~--  136 (209)
T COG2518          61 VARMLQLLELKP--GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE--  136 (209)
T ss_pred             HHHHHHHhCCCC--CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC--
Confidence            344555555444  8999999999999999999998899999999999999999999999999999999998875532  


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                        .+||.|+..-.-..+...+++.|   +++|.+.+-..
T Consensus       137 --aPyD~I~Vtaaa~~vP~~Ll~QL---~~gGrlv~PvG  170 (209)
T COG2518         137 --APYDRIIVTAAAPEVPEALLDQL---KPGGRLVIPVG  170 (209)
T ss_pred             --CCcCEEEEeeccCCCCHHHHHhc---ccCCEEEEEEc
Confidence              48999999765445555555555   78888776665

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.49  E-value=5.8e-13  Score=106.11  Aligned_cols=142  Identities=20%  Similarity=0.225  Sum_probs=97.1

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      ..++...+...  ++.+|||+|||+|.++..+++...+++++|+++.+++.|+++++..+++++++..+|..+....   
T Consensus        67 ~~~l~~~l~~~--~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---  141 (212)
T PRK00312         67 VARMTELLELK--PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA---  141 (212)
T ss_pred             HHHHHHhcCCC--CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc---
Confidence            33444444433  4789999999999999988877679999999999999999999999988899999998654321   


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCC
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTP  211 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~  211 (222)
                       .+.||+|+++.+...+...   ....++++|.+++...... ...+..+.+      ..++|....+-.+.+.|..+
T Consensus       142 -~~~fD~I~~~~~~~~~~~~---l~~~L~~gG~lv~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~  208 (212)
T PRK00312        142 -YAPFDRILVTAAAPEIPRA---LLEQLKEGGILVAPVGGEE-QQLLTRVRK------RGGRFEREVLEEVRFVPLVK  208 (212)
T ss_pred             -CCCcCEEEEccCchhhhHH---HHHhcCCCcEEEEEEcCCC-ceEEEEEEE------cCCeEEEEEEccEEEEecCC
Confidence             2479999998765444322   2345789999887765221 111222211      13446665555555555554

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.49  E-value=6.2e-13  Score=104.83  Aligned_cols=96  Identities=25%  Similarity=0.184  Sum_probs=76.1

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++++..+++++++...|+.++...     +.||+|++....
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~fD~I~~~~~~  105 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-----GEYDFILSTVVL  105 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-----CCcCEEEEecch
Confidence            579999999999999999988889999999999999999999998887799999998765321     469999987541


Q ss_pred             C----CccHHHHHHH-HhCCCCcEEE
Q 043853          148 P----GMHMKLIKFL-LKLKAPRIVY  168 (222)
Q Consensus       148 ~----~~~~~~~~~l-~~l~~~~~v~  168 (222)
                      .    .....+++.+ +.++|+|.++
T Consensus       106 ~~~~~~~~~~~l~~i~~~LkpgG~~~  131 (197)
T PRK11207        106 MFLEAKTIPGLIANMQRCTKPGGYNL  131 (197)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            1    1123444444 3479999854

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.49  E-value=1.1e-13  Score=107.48  Aligned_cols=127  Identities=24%  Similarity=0.380  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--e---------EEEEeCCHHHHHHHHHHHHHcCCC
Q 043853           47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--H---------VYGYEVVPQAISDACRNAKLNNIS  115 (222)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~---------v~gvD~~~~~i~~a~~n~~~~~~~  115 (222)
                      ..+.+.+...+..++...  ++..+||.+||+|++.+..+....  .         ++|+|+++.+++.|++|++..+++
T Consensus        10 a~L~~~lA~~ll~la~~~--~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~   87 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWR--PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE   87 (179)
T ss_dssp             TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C
T ss_pred             CCCCHHHHHHHHHHhCCC--CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC
Confidence            345666777777776544  378999999999999997765322  3         889999999999999999999987


Q ss_pred             c-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCC----------ccHHHHHHHHh-CCCCcEEEEeeCccchHhhH
Q 043853          116 N-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG----------MHMKLIKFLLK-LKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       116 ~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~----------~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~  180 (222)
                      . +.+.+.|+.++...    .+.+|+|++|||+..          +...+.+.+.+ +++ ..+++.+....+.+.+
T Consensus        88 ~~i~~~~~D~~~l~~~----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~~~  159 (179)
T PF01170_consen   88 DYIDFIQWDARELPLP----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELEKAL  159 (179)
T ss_dssp             GGEEEEE--GGGGGGT----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHHHHH
T ss_pred             CceEEEecchhhcccc----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHh
Confidence            6 99999999998721    247999999999431          22344455555 455 7677777665554443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.49  E-value=9.1e-13  Score=106.51  Aligned_cols=103  Identities=18%  Similarity=0.129  Sum_probs=81.7

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC--CCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA--FPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~--~~~fD~i  141 (222)
                      .++|||+|||+|+-++.++..   ..+++++|+++++++.|++|++.+++.+ ++++.+|+.+....+...  .+.||+|
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V  148 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA  148 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence            679999999999988877764   3499999999999999999999999865 999999998876544211  2479999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ++|.+...+...+...+..+++||+++++
T Consensus       149 fiDa~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        149 FVDADKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             EECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            99987555443333345568999988754

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.48  E-value=1.2e-12  Score=104.35  Aligned_cols=112  Identities=19%  Similarity=0.204  Sum_probs=84.3

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG  129 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~  129 (222)
                      +...+.+.+...  ++.+|||+|||+|+++..+++..   .+++++|+++.+++.|+++++..+..+++++++|..+...
T Consensus        64 ~~~~~~~~l~~~--~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~  141 (212)
T PRK13942         64 MVAIMCELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE  141 (212)
T ss_pred             HHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence            344445554433  47899999999999999888753   4999999999999999999999998889999999876543


Q ss_pred             hcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      .    ...||+|+++-....+...+   ...++++|.+++....
T Consensus       142 ~----~~~fD~I~~~~~~~~~~~~l---~~~LkpgG~lvi~~~~  178 (212)
T PRK13942        142 E----NAPYDRIYVTAAGPDIPKPL---IEQLKDGGIMVIPVGS  178 (212)
T ss_pred             c----CCCcCEEEECCCcccchHHH---HHhhCCCcEEEEEEcC
Confidence            2    24799999976433333322   3347999998876543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.48  E-value=4.5e-12  Score=97.50  Aligned_cols=98  Identities=18%  Similarity=0.151  Sum_probs=76.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.++||+|||+|.++..+++.+.+++++|+|+.+++.+++++..  .++++++++|+.++...    ...||.|++|||
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~----~~~~d~vi~n~P   86 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLP----KLQPYKVVGNLP   86 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcc----ccCCCEEEECCC
Confidence            467999999999999999988888999999999999999999854  34699999999887542    125999999999


Q ss_pred             CCCccHHHHHHHH-h--CCCCcEEEEee
Q 043853          147 RPGMHMKLIKFLL-K--LKAPRIVYVSC  171 (222)
Q Consensus       147 ~~~~~~~~~~~l~-~--l~~~~~v~~~~  171 (222)
                      +... ..++..+. .  +.+++++++..
T Consensus        87 y~~~-~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       87 YNIS-TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             cccH-HHHHHHHHhcCCCcceEEEEEEH
Confidence            7643 34444443 2  23566666554

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.48  E-value=5.5e-12  Score=99.32  Aligned_cols=111  Identities=19%  Similarity=0.233  Sum_probs=81.6

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+...+...  ++.+|||+|||+|.+++.+++.  ..+++++|+|+.+++.+++|++.+++++++++.+|+.+....+. 
T Consensus        31 ~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~-  107 (196)
T PRK07402         31 LLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA-  107 (196)
T ss_pred             HHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC-
Confidence            345555433  4789999999999999988764  35999999999999999999999988789999999876432221 


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                        ..+|.++.+... . ...+++.+ +.++++|.+++....
T Consensus       108 --~~~d~v~~~~~~-~-~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        108 --PAPDRVCIEGGR-P-IKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             --CCCCEEEEECCc-C-HHHHHHHHHHhcCCCeEEEEEeec
Confidence              246777776432 2 24555554 458899887766543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.46  E-value=4.3e-13  Score=108.17  Aligned_cols=98  Identities=29%  Similarity=0.337  Sum_probs=69.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||||.++..+++..   .+|+|+|+|+.|++.|+++++..+..+++++++|+.+++..    ++.||+|++
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~----d~sfD~v~~  122 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP----DNSFDAVTC  122 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-----TT-EEEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC----CCceeEEEH
Confidence            47899999999999999988753   48999999999999999999998887899999999998753    368999987


Q ss_pred             CCC---CCCccHHHHHHHHhCCCCcEEE
Q 043853          144 DPN---RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       144 ~pp---~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      .--   -.+....+.+..+.++|||.+.
T Consensus       123 ~fglrn~~d~~~~l~E~~RVLkPGG~l~  150 (233)
T PF01209_consen  123 SFGLRNFPDRERALREMYRVLKPGGRLV  150 (233)
T ss_dssp             ES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred             HhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence            652   1233344444555589998765

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.46  E-value=1.5e-12  Score=107.08  Aligned_cols=80  Identities=20%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|+.++.+++..   ..|+++|+++.+++.+++|++.+++.++++++.|+..+...    .+.||.|+
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~----~~~fD~Vl  145 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA----VPKFDAIL  145 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh----ccCCCEEE
Confidence            357899999999999999887642   48999999999999999999999998899999998775432    23699999


Q ss_pred             ECCCCCC
Q 043853          143 SDPNRPG  149 (222)
Q Consensus       143 ~~pp~~~  149 (222)
                      +|||..+
T Consensus       146 ~D~Pcsg  152 (264)
T TIGR00446       146 LDAPCSG  152 (264)
T ss_pred             EcCCCCC
Confidence            9999654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.46  E-value=1.7e-12  Score=106.31  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++. +++++++|+.++....   .+.||+|+++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~  119 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFH  119 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEeh
Confidence            34679999999999999999998889999999999999999999988874 5999999998864321   2479999987


Q ss_pred             CCC--CCccHHHHHHH-HhCCCCcEEEEe
Q 043853          145 PNR--PGMHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       145 pp~--~~~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                      ...  -.-...+++.+ +.++|+|.+.+.
T Consensus       120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        120 AVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            541  11123444444 448999998754

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.46  E-value=1.2e-12  Score=103.06  Aligned_cols=95  Identities=18%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..++++ +++...|+......     +.||+|+++...
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~-----~~fD~I~~~~~~  104 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALN-----EDYDFIFSTVVF  104 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcccc-----CCCCEEEEeccc
Confidence            569999999999999999988889999999999999999999888875 78888887554321     379999987652


Q ss_pred             CC----ccHHHHHHH-HhCCCCcEEE
Q 043853          148 PG----MHMKLIKFL-LKLKAPRIVY  168 (222)
Q Consensus       148 ~~----~~~~~~~~l-~~l~~~~~v~  168 (222)
                      ..    ....+++.+ +.++|+|.++
T Consensus       105 ~~~~~~~~~~~l~~~~~~LkpgG~ll  130 (195)
T TIGR00477       105 MFLQAGRVPEIIANMQAHTRPGGYNL  130 (195)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence            21    223444444 3479999744

Part of a tellurite-reducing operon tehA and tehB

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.45  E-value=8.7e-12  Score=104.97  Aligned_cols=100  Identities=21%  Similarity=0.208  Sum_probs=78.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++.+.+|+|+|.++.+++.|++++...+. .+++++++|+.++...    .+.||+|++.-
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~----~~~FD~Vi~~~  206 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE----GRKFDAVLSLE  206 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc----cCCCCEEEEhh
Confidence            467999999999999999998888999999999999999998876554 3599999999876532    24799998854


Q ss_pred             C---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          146 N---RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       146 p---~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .   -.+ ...++..+.+ ++|+|.+++++
T Consensus       207 vLeHv~d-~~~~L~~l~r~LkPGG~liist  235 (322)
T PLN02396        207 VIEHVAN-PAEFCKSLSALTIPNGATVLST  235 (322)
T ss_pred             HHHhcCC-HHHHHHHHHHHcCCCcEEEEEE
Confidence            2   112 2455665554 79999998876

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.45  E-value=9.4e-13  Score=110.37  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             ceeeeecCeeE-EEcCCccccCCHHHHHHHHHHHHHHhcCC------CCCCCeEEEEecccchhHHHHhhc--CCeEEEE
Q 043853           25 NITETLRGLTF-QISANSFFQTNTHQAEVLYKLIEDCAGLR------DDGSEIVLDLFCGTGTIGLTLARW--VKHVYGY   95 (222)
Q Consensus        25 ~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~i~~~~~~~------~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gv   95 (222)
                      .+-...+|+.+ .++.+...| ..+....++.++.+++...      .....++||||||+|.+...++..  ..+++|+
T Consensus        66 alL~~~ygl~~wdip~~~LcP-piP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~at  144 (321)
T PRK11727         66 ALLAHFYGVAHWDIPAGYLCP-PIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGS  144 (321)
T ss_pred             HHHHHhcCCCcccCCCCCcCC-CCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEE
Confidence            34445578875 555554444 4666667778888876421      124679999999999888877654  4599999


Q ss_pred             eCCHHHHHHHHHHHHHc-CCCc-EEEEe-CchhchhhhcCCCCCCCcEEEECCCCC
Q 043853           96 EVVPQAISDACRNAKLN-NISN-ATFVQ-GDLNKIGGDFGNAFPKPDIVISDPNRP  148 (222)
Q Consensus        96 D~~~~~i~~a~~n~~~~-~~~~-v~~~~-~d~~~~~~~~~~~~~~fD~ii~~pp~~  148 (222)
                      |+|+.+++.|++|++.| ++++ +++.. .|...+........+.||+|++|||.-
T Consensus       145 DId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~  200 (321)
T PRK11727        145 DIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFH  200 (321)
T ss_pred             eCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence            99999999999999999 7864 88764 454444333222235899999999943

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.45  E-value=2.1e-12  Score=110.71  Aligned_cols=138  Identities=14%  Similarity=0.165  Sum_probs=101.3

Q ss_pred             eecCeeEEEc--CCccccCCHHHHHHHHHHHHHHh-cCCC-CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHH
Q 043853           29 TLRGLTFQIS--ANSFFQTNTHQAEVLYKLIEDCA-GLRD-DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQA  101 (222)
Q Consensus        29 ~~~~~~~~~~--~~~f~~~~~~~~~~~~~~i~~~~-~~~~-~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~  101 (222)
                      ++++..+.++  ..+||.+.......+.-.+.... .... ..+-+|||++||+|..++.++..   ..+|+++|+||.+
T Consensus         2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A   81 (374)
T TIGR00308         2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA   81 (374)
T ss_pred             ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence            3455666665  46898876665555433332221 1111 01248999999999999988864   3599999999999


Q ss_pred             HHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          102 ISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       102 i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      ++.+++|++.|++++++++++|+..+.....   ..||+|++||+  +....+++.+ ..+.++|++++++
T Consensus        82 v~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~---~~fDvIdlDPf--Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308        82 VESIKNNVEYNSVENIEVPNEDAANVLRYRN---RKFHVIDIDPF--GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             HHHHHHHHHHhCCCcEEEEchhHHHHHHHhC---CCCCEEEeCCC--CCcHHHHHHHHHhcccCCEEEEEe
Confidence            9999999999999889999999998876432   47999999996  3444566544 5578889999886

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.45  E-value=6.2e-13  Score=105.42  Aligned_cols=100  Identities=22%  Similarity=0.256  Sum_probs=82.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||-|.++..+|+.+.+|+|+|+++.+|+.|+..+..+++. +++.+.++.++...    .++||+|+|.--
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~----~~~FDvV~cmEV  133 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASA----GGQFDVVTCMEV  133 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhc----CCCccEEEEhhH
Confidence            4789999999999999999999999999999999999999999998885 88999999887653    258999998631


Q ss_pred             ---CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          147 ---RPGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       147 ---~~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                         -.. ...++..+.. ++|+|++++|+-
T Consensus       134 lEHv~d-p~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         134 LEHVPD-PESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             HHccCC-HHHHHHHHHHHcCCCcEEEEecc
Confidence               112 2345555544 799999999983

>PLN02244 tocopherol O-methyltransferase

Probab=99.45  E-value=4.2e-12  Score=108.15  Aligned_cols=100  Identities=21%  Similarity=0.181  Sum_probs=78.9

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++++..++. +++++++|+.+.+..    .+.||+|++.
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~----~~~FD~V~s~  193 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE----DGQFDLVWSM  193 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC----CCCccEEEEC
Confidence            4679999999999999999875 569999999999999999999988875 599999999876532    3589999986


Q ss_pred             CC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          145 PN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      -.   ..+. ..++..+ +.++|+|.+++.+
T Consensus       194 ~~~~h~~d~-~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        194 ESGEHMPDK-RKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CchhccCCH-HHHHHHHHHHcCCCcEEEEEE
Confidence            42   1222 3444444 5589999988754

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.44  E-value=5.8e-12  Score=101.52  Aligned_cols=101  Identities=22%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.++..+++..   .+++|+|+++.+++.|+++++..+.++++++++|+.+.+..    .+.||+|++
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~fD~V~~  120 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD----DNSFDYVTI  120 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC----CCCccEEEE
Confidence            47899999999999999888752   48999999999999999999888887899999999876431    257999998


Q ss_pred             CCCC--CCccHHHHHH-HHhCCCCcEEEEee
Q 043853          144 DPNR--PGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~--~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      +...  ......+++. .+.++|+|.+++..
T Consensus       121 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       121 GFGLRNVPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             ecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            7541  1112344444 44589999887654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02476 O-methyltransferase

Probab=99.44  E-value=2.9e-12  Score=105.24  Aligned_cols=103  Identities=14%  Similarity=0.074  Sum_probs=84.2

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCC--CCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGN--AFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~--~~~~fD~i  141 (222)
                      .++|||+|||+|+.++.+|..   ..+++++|.+++..+.|++|++..|+. +++++.+|+.+.+..+..  ..+.||+|
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V  198 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA  198 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence            689999999999999999875   348999999999999999999999997 499999999888765421  12479999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      |+|.++..+...+...+..++++|++.++
T Consensus       199 FIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        199 FVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             EECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            99998766544444455668999987754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.44  E-value=2.4e-12  Score=110.02  Aligned_cols=112  Identities=14%  Similarity=0.116  Sum_probs=90.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .+..+||+|||+|.+++.+|+..+  .++|+|+++.+++.|.+++..++++|+.++++|+..+...+.  .+.+|.|+++
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln  199 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH  199 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence            467999999999999999998754  899999999999999999999999999999999987654332  3579999998


Q ss_pred             CCCCC--------ccHHHHHHHHh-CCCCcEEEEeeCccchHhhH
Q 043853          145 PNRPG--------MHMKLIKFLLK-LKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       145 pp~~~--------~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~  180 (222)
                      .|.+.        ....+++.+.+ |+++|.+++.++........
T Consensus       200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~  244 (390)
T PRK14121        200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFS  244 (390)
T ss_pred             CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHH
Confidence            76221        22456666544 89999999988776666554

>PRK04266 fibrillarin; Provisional

Probab=99.43  E-value=1.8e-11  Score=98.30  Aligned_cols=102  Identities=21%  Similarity=0.161  Sum_probs=73.9

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+|||+|.++..+++..  .+|+|+|+++.|++.+.++++..  +|+.++.+|+.+...... -.+.||+|++
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~-l~~~~D~i~~  147 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAH-VVEKVDVIYQ  147 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhh-ccccCCEEEE
Confidence            347899999999999999998864  48999999999999888887653  578999999875211000 0136999999


Q ss_pred             CCCCCCccHHHHHHHH-hCCCCcEEEEe
Q 043853          144 DPNRPGMHMKLIKFLL-KLKAPRIVYVS  170 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~-~l~~~~~v~~~  170 (222)
                      +.+.......+++.+. .++|+|.++++
T Consensus       148 d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        148 DVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            8653222223344443 48999998873

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.43  E-value=9.1e-12  Score=94.46  Aligned_cols=155  Identities=19%  Similarity=0.160  Sum_probs=103.4

Q ss_pred             ccccCCHHHHHHHHHHHHHHhcCC-C-CCCCeEEEEecccchhHHHHhhcC-C-eEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853           41 SFFQTNTHQAEVLYKLIEDCAGLR-D-DGSEIVLDLFCGTGTIGLTLARWV-K-HVYGYEVVPQAISDACRNAKLNNISN  116 (222)
Q Consensus        41 ~f~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~vlDlg~G~G~~~~~la~~~-~-~v~gvD~~~~~i~~a~~n~~~~~~~~  116 (222)
                      .||.  ....+++++|+.+.+... . .+..+|||+|||.|.+...|++.+ . +.+|+|.|+.+++.|+..++..+.+|
T Consensus        41 vWFg--~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n  118 (227)
T KOG1271|consen   41 VWFG--EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN  118 (227)
T ss_pred             eecC--CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence            5555  356777889998887521 1 134599999999999999998753 3 69999999999999999999999998


Q ss_pred             -EEEEeCchhchhhhc-----CCCCCCCcEEEECCC----CCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853          117 -ATFVQGDLNKIGGDF-----GNAFPKPDIVISDPN----RPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG  186 (222)
Q Consensus       117 -v~~~~~d~~~~~~~~-----~~~~~~fD~ii~~pp----~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~  186 (222)
                       ++|.+.|+.+.....     .-+.+++|.|-++|-    |..+....++.+  ++|+|+..+.++.-+.....+.+.  
T Consensus       119 ~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~l--l~~~gifvItSCN~T~dELv~~f~--  194 (227)
T KOG1271|consen  119 EIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKL--LSPGGIFVITSCNFTKDELVEEFE--  194 (227)
T ss_pred             ceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhc--cCCCcEEEEEecCccHHHHHHHHh--
Confidence             999999998752211     112234555555552    222333333333  467776554444445555566664  


Q ss_pred             CCCCccCCCeEEeEeeeeccC
Q 043853          187 VGDQNIKGCYKLKSLQPVDMF  207 (222)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~  207 (222)
                            ..++++....|...|
T Consensus       195 ------~~~f~~~~tvp~ptF  209 (227)
T KOG1271|consen  195 ------NFNFEYLSTVPTPTF  209 (227)
T ss_pred             ------cCCeEEEEeeccceE
Confidence                  556777776655443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.42  E-value=7.6e-13  Score=104.88  Aligned_cols=161  Identities=20%  Similarity=0.202  Sum_probs=101.9

Q ss_pred             cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACR  107 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~  107 (222)
                      .+..+.+..++...     .+.+...+.+.+++.+  +++|||+|||+|+.+..++...   ..|+++|.++..++.|++
T Consensus        43 ~d~~l~i~~~~~is-----~P~~~a~~l~~L~l~p--g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~  115 (209)
T PF01135_consen   43 EDRPLPIGCGQTIS-----APSMVARMLEALDLKP--GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARR  115 (209)
T ss_dssp             SSS-EEEETTEEE-------HHHHHHHHHHTTC-T--T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHH
T ss_pred             CCCCeeecceeech-----HHHHHHHHHHHHhcCC--CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHH
Confidence            34555555554432     2233444555555554  8999999999999999998753   279999999999999999


Q ss_pred             HHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccC
Q 043853          108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV  187 (222)
Q Consensus       108 n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~  187 (222)
                      ++...+..|++++.+|........    .+||.|+++.........   .+..|+++|.+++-... .....+-.+.   
T Consensus       116 ~l~~~~~~nv~~~~gdg~~g~~~~----apfD~I~v~~a~~~ip~~---l~~qL~~gGrLV~pi~~-~~~~~l~~~~---  184 (209)
T PF01135_consen  116 NLARLGIDNVEVVVGDGSEGWPEE----APFDRIIVTAAVPEIPEA---LLEQLKPGGRLVAPIGQ-GGSQRLVRIT---  184 (209)
T ss_dssp             HHHHHTTHSEEEEES-GGGTTGGG-----SEEEEEESSBBSS--HH---HHHTEEEEEEEEEEESS-SSSEEEEEEE---
T ss_pred             HHHHhccCceeEEEcchhhccccC----CCcCEEEEeeccchHHHH---HHHhcCCCcEEEEEEcc-CCceEEEEEE---
Confidence            999999999999999987765432    479999998754444333   44446888888766554 1111111111   


Q ss_pred             CCCccCCCeEEeEeeeeccCCCCC
Q 043853          188 GDQNIKGCYKLKSLQPVDMFPHTP  211 (222)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~p~~~  211 (222)
                        +.-++.|+.....++.+.|...
T Consensus       185 --k~~~g~~~~~~~~~~~fvpl~~  206 (209)
T PF01135_consen  185 --KKGDGEFSREELFPVRFVPLVG  206 (209)
T ss_dssp             --EETTTEEEEEEEEEE---B-BS
T ss_pred             --EeCCCcEEEEEEeeEEEEeccC
Confidence              1113567778888888777654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.42  E-value=2e-11  Score=101.66  Aligned_cols=101  Identities=20%  Similarity=0.262  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhh
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGG  129 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~  129 (222)
                      +.+.+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++...+ .++++++++|+.+...
T Consensus        22 ~~i~~~Iv~~~~~~--~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~   99 (294)
T PTZ00338         22 PLVLDKIVEKAAIK--PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF   99 (294)
T ss_pred             HHHHHHHHHhcCCC--CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence            34445555555433  47899999999999999999888899999999999999999998776 4569999999987643


Q ss_pred             hcCCCCCCCcEEEECCCCCCccHHHHHHHH
Q 043853          130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~  159 (222)
                            ..||.|++|+|+....+-+...+.
T Consensus       100 ------~~~d~VvaNlPY~Istpil~~ll~  123 (294)
T PTZ00338        100 ------PYFDVCVANVPYQISSPLVFKLLA  123 (294)
T ss_pred             ------cccCEEEecCCcccCcHHHHHHHh
Confidence                  368999999998766555555553

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=6.1e-12  Score=110.46  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|+.++.+++..   .+++++|+++.+++.+++|++.+|+++++++++|+.+.........+.||.|+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  330 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL  330 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence            347899999999999999888752   48999999999999999999999998899999999876522111124799999


Q ss_pred             ECCCCCC
Q 043853          143 SDPNRPG  149 (222)
Q Consensus       143 ~~pp~~~  149 (222)
                      +|+|+++
T Consensus       331 ~DaPCSg  337 (434)
T PRK14901        331 LDAPCSG  337 (434)
T ss_pred             EeCCCCc
Confidence            9999654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=7.4e-12  Score=110.31  Aligned_cols=80  Identities=23%  Similarity=0.261  Sum_probs=68.8

Q ss_pred             CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|+.++.+++.   ..+++|+|+++.+++.+++|++.+|+++++++++|+.+....+.   +.||.|++
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~---~~fD~Vl~  326 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA---EKFDKILV  326 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc---ccCCEEEE
Confidence            4789999999999999988874   35999999999999999999999999889999999987643322   47999999


Q ss_pred             CCCCCC
Q 043853          144 DPNRPG  149 (222)
Q Consensus       144 ~pp~~~  149 (222)
                      |||+.+
T Consensus       327 D~Pcsg  332 (444)
T PRK14902        327 DAPCSG  332 (444)
T ss_pred             cCCCCC
Confidence            999654

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.42  E-value=2.1e-12  Score=102.11  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=84.0

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC--CCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA--FPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~--~~~fD~i  141 (222)
                      .++|||+||++|+-++++|+.   ..+++++|.+++..+.|+++++..|+.+ ++++.+|+.+....+...  .++||+|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            679999999999999999975   3599999999999999999999999864 999999999887655322  2479999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      |+|-.+..+...+...+..++++|+++++-
T Consensus       126 FiDa~K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  126 FIDADKRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             EEESTGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             EEcccccchhhHHHHHhhhccCCeEEEEcc
Confidence            999987666555555556688988887554

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.41  E-value=3.6e-12  Score=106.16  Aligned_cols=96  Identities=21%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.++++++.+++ ++++...|+.+...     .+.||+|++....
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-----~~~fD~I~~~~vl  194 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-----QEEYDFILSTVVL  194 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-----cCCccEEEEcchh
Confidence            45999999999999999998888999999999999999999998888 68999988876432     2479999987531


Q ss_pred             C----CccHHHHHHHH-hCCCCcEEEE
Q 043853          148 P----GMHMKLIKFLL-KLKAPRIVYV  169 (222)
Q Consensus       148 ~----~~~~~~~~~l~-~l~~~~~v~~  169 (222)
                      .    .....+++.+. .++|+|.+++
T Consensus       195 ~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        195 MFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            1    12234455443 3789998554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.41  E-value=4.1e-12  Score=103.60  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             CCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      ++.+|||+|||+|..+..+++.    ..+++|+|.|+.|++.|++++..++.. +++++++|+.+.+.      ..+|+|
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~------~~~D~v  129 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI------ENASMV  129 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC------CCCCEE
Confidence            5789999999999999888762    359999999999999999999887765 59999999987643      258999


Q ss_pred             EECCCCC----CccHHHHHHH-HhCCCCcEEEEee
Q 043853          142 ISDPNRP----GMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~----~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +++....    .....+++.+ +.++|+|.++++.
T Consensus       130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            8875311    1123444544 4489999988765

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=5.1e-12  Score=111.28  Aligned_cols=79  Identities=20%  Similarity=0.276  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|+.++.+++.   ..+++|+|+|+.+++.+++|++..|+++++++++|+.++..     ...||.|+
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~-----~~~fD~Vl  323 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP-----EEQPDAIL  323 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc-----CCCCCEEE
Confidence            34789999999999999888763   34899999999999999999999999889999999987642     24799999


Q ss_pred             ECCCCCC
Q 043853          143 SDPNRPG  149 (222)
Q Consensus       143 ~~pp~~~  149 (222)
                      +|||+.+
T Consensus       324 ~D~Pcsg  330 (445)
T PRK14904        324 LDAPCTG  330 (445)
T ss_pred             EcCCCCC
Confidence            9999654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.40  E-value=1e-11  Score=108.76  Aligned_cols=81  Identities=15%  Similarity=0.137  Sum_probs=68.9

Q ss_pred             CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|+.++.++..   ..+|+++|+++.+++.+++|++..|++++++.++|+.++....   .+.||.|+
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~---~~~fD~Vl  312 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV---QDTFDRIL  312 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh---hccCCEEE
Confidence            35789999999999999988874   3599999999999999999999999988999999998764221   14799999


Q ss_pred             ECCCCCC
Q 043853          143 SDPNRPG  149 (222)
Q Consensus       143 ~~pp~~~  149 (222)
                      +|+|..+
T Consensus       313 ~DaPCsg  319 (431)
T PRK14903        313 VDAPCTS  319 (431)
T ss_pred             ECCCCCC
Confidence            9999643

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.38  E-value=1.5e-11  Score=101.04  Aligned_cols=100  Identities=22%  Similarity=0.264  Sum_probs=73.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHH---cCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKL---NNISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ++.+|||+|||+|.++..+++..   .+++|+|+|+.|++.|+++...   ...++++++++|+.+++..    .+.||+
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~----~~sfD~  148 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD----DCYFDA  148 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC----CCCEeE
Confidence            47899999999999999888752   3899999999999999887642   2344699999999887542    347999


Q ss_pred             EEECCC---CCCccHHHHHH-HHhCCCCcEEEEee
Q 043853          141 VISDPN---RPGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp---~~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      |+++-.   ..+. ..++.. .+.++|+|.+++..
T Consensus       149 V~~~~~l~~~~d~-~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        149 ITMGYGLRNVVDR-LKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             EEEecccccCCCH-HHHHHHHHHHcCcCcEEEEEE
Confidence            988642   1222 344444 45589999876553

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.38  E-value=8.1e-12  Score=103.02  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=76.0

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFG  132 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~  132 (222)
                      +.+.+.+.+.  ++++|||+|||.|++++.+|+. +.+|+|+.+|++..+.+++.++..|+++ +++..+|..++..   
T Consensus        52 ~~~~~~~~l~--~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---  126 (273)
T PF02353_consen   52 DLLCEKLGLK--PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---  126 (273)
T ss_dssp             HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred             HHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---
Confidence            3444444444  4899999999999999999987 7799999999999999999999999976 9999999987643   


Q ss_pred             CCCCCCcEEEECCC-----CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          133 NAFPKPDIVISDPN-----RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       133 ~~~~~fD~ii~~pp-----~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                          +||.|++---     ... .+.+.+.+.+ |+|+|.+++.+
T Consensus       127 ----~fD~IvSi~~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  127 ----KFDRIVSIEMFEHVGRKN-YPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             ----S-SEEEEESEGGGTCGGG-HHHHHHHHHHHSETTEEEEEEE
T ss_pred             ----CCCEEEEEechhhcChhH-HHHHHHHHHHhcCCCcEEEEEe
Confidence                7999988632     122 3455666544 89999998665

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.37  E-value=6.1e-12  Score=97.96  Aligned_cols=98  Identities=21%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-  146 (222)
                      ..++||+|||.|..++.||+.+..|+|+|+|+.+++.+++.++..+++ ++..+.|+.+....     ..||+|++.-. 
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~~-----~~yD~I~st~v~  104 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDFP-----EEYDFIVSTVVF  104 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-T-----TTEEEEEEESSG
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcccc-----CCcCEEEEEEEe
Confidence            579999999999999999999999999999999999999999988886 99999999876542     47999987421 


Q ss_pred             ---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          147 ---RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       147 ---~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                         .+...+.+++.+.. ++|||+..+.+
T Consensus       105 ~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen  105 MFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             GGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence               23345667777755 68998866533

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.37  E-value=2.6e-11  Score=106.31  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=67.3

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+|||+|+.++.+++..  ..++|+|+++.+++.+++|++.+|+. ++++++|+.+.....  +...||.|++
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~--~~~~fD~Vl~  319 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWW--DGQPFDRILL  319 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhc--ccCCCCEEEE
Confidence            357899999999999999888764  48999999999999999999999885 789999997653211  1247999999


Q ss_pred             CCCCCC
Q 043853          144 DPNRPG  149 (222)
Q Consensus       144 ~pp~~~  149 (222)
                      |||..+
T Consensus       320 D~Pcs~  325 (427)
T PRK10901        320 DAPCSA  325 (427)
T ss_pred             CCCCCc
Confidence            999543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.35  E-value=1.8e-11  Score=99.88  Aligned_cols=97  Identities=18%  Similarity=0.198  Sum_probs=74.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      +..+|||+|||+|.++..+++.+.+++++|+|+.+++.|+++..     ...++++|+.+++.    ..+.||+|+++.+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~----~~~~fD~V~s~~~  112 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPL----ATATFDLAWSNLA  112 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcC----CCCcEEEEEECch
Confidence            36789999999999999888877899999999999999998743     24678899877643    2247999999875


Q ss_pred             C--CCccHHHHHHH-HhCCCCcEEEEeeC
Q 043853          147 R--PGMHMKLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       147 ~--~~~~~~~~~~l-~~l~~~~~v~~~~~  172 (222)
                      .  ..-...++..+ +.++|+|.+++++-
T Consensus       113 l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        113 VQWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             hhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            2  11223444444 45899999988763

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.34  E-value=8.2e-11  Score=94.25  Aligned_cols=130  Identities=20%  Similarity=0.158  Sum_probs=91.7

Q ss_pred             CCccccCCHHHHHHHHHHHHHHhcCC--CCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853           39 ANSFFQTNTHQAEVLYKLIEDCAGLR--DDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN  116 (222)
Q Consensus        39 ~~~f~~~~~~~~~~~~~~i~~~~~~~--~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~  116 (222)
                      ++..+.+.........+++.+.+...  ...+.+|||+|||+|.++..+++.+.+++++|.++.+++.+++++...+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~   94 (224)
T TIGR01983        15 PNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLK   94 (224)
T ss_pred             CCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            34444433444444556676665421  1236799999999999999888877789999999999999999998877756


Q ss_pred             EEEEeCchhchhhhcCCCCCCCcEEEECCC--CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPN--RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      +++..+|+.++....   .+.||+|+++..  ...-...+++.+. .++++|.++++.
T Consensus        95 ~~~~~~d~~~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983        95 IEYRCTSVEDLAEKG---AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             eEEEeCCHHHhhcCC---CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            899999998775432   247999988642  1112234555543 378888887765

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.34  E-value=2.1e-11  Score=100.00  Aligned_cols=90  Identities=22%  Similarity=0.240  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD  130 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~  130 (222)
                      ..+.+.+.+.+...  ++++|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++..  .++++++++|+.++.. 
T Consensus        15 ~~~~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~-   89 (258)
T PRK14896         15 DRVVDRIVEYAEDT--DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL-   89 (258)
T ss_pred             HHHHHHHHHhcCCC--CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-
Confidence            33444555554433  378999999999999999998888999999999999999998854  4579999999987653 


Q ss_pred             cCCCCCCCcEEEECCCCCCc
Q 043853          131 FGNAFPKPDIVISDPNRPGM  150 (222)
Q Consensus       131 ~~~~~~~fD~ii~~pp~~~~  150 (222)
                           ..||.|++|+|+...
T Consensus        90 -----~~~d~Vv~NlPy~i~  104 (258)
T PRK14896         90 -----PEFNKVVSNLPYQIS  104 (258)
T ss_pred             -----hhceEEEEcCCcccC
Confidence                 258999999997643

>PHA03412 putative methyltransferase; Provisional

Probab=99.34  E-value=1.2e-11  Score=98.71  Aligned_cols=69  Identities=22%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             CCeEEEEecccchhHHHHhhc-----CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW-----VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~-----~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      +.+|||+|||+|.+++.+++.     ..+++++|+++.+++.|++|..     ++.++++|+.....     ..+||+||
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~-----~~~FDlII  119 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF-----DTLFDMAI  119 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc-----cCCccEEE
Confidence            569999999999999988763     3489999999999999998853     57899999976432     14799999


Q ss_pred             ECCC
Q 043853          143 SDPN  146 (222)
Q Consensus       143 ~~pp  146 (222)
                      +|||
T Consensus       120 sNPP  123 (241)
T PHA03412        120 SNPP  123 (241)
T ss_pred             ECCC
Confidence            9999

>TIGR00740 methyltransferase, putative

Probab=99.34  E-value=3.4e-11  Score=97.64  Aligned_cols=99  Identities=14%  Similarity=0.172  Sum_probs=75.2

Q ss_pred             CCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      ++.+|||+|||+|..+..+++.    ..+++|+|+|+.|++.|+++++..+.. +++++++|+.+...      +.+|+|
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~d~v  126 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI------KNASMV  126 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC------CCCCEE
Confidence            4679999999999999988864    348999999999999999999876543 59999999987653      258888


Q ss_pred             EECCCCCCc----cHHHHHHH-HhCCCCcEEEEee
Q 043853          142 ISDPNRPGM----HMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~~~----~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +++-...-+    ...+++.+ +.++|+|.++++.
T Consensus       127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            776431111    13344444 4489999998775

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.33  E-value=1.1e-10  Score=96.52  Aligned_cols=96  Identities=22%  Similarity=0.180  Sum_probs=72.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++..   ++++++++|+.++...-  
T Consensus        31 ~~~i~~~l~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~--  103 (272)
T PRK00274         31 LDKIVDAAGPQ--PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE--  103 (272)
T ss_pred             HHHHHHhcCCC--CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH--
Confidence            33444444333  467999999999999999998888999999999999999988742   56999999998875420  


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHH
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~  159 (222)
                        -.++.|++|||+.-. ..++..+.
T Consensus       104 --~~~~~vv~NlPY~is-s~ii~~~l  126 (272)
T PRK00274        104 --LQPLKVVANLPYNIT-TPLLFHLL  126 (272)
T ss_pred             --cCcceEEEeCCccch-HHHHHHHH
Confidence              015899999996543 44444443

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.33  E-value=3.4e-11  Score=101.33  Aligned_cols=107  Identities=25%  Similarity=0.216  Sum_probs=80.4

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      .+.+.++..  ++.+|||+|||+|.++..+++...   .|+++|+++.+++.|+++++.++.+++.++++|+.+..... 
T Consensus        71 ~ll~~L~i~--~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~-  147 (322)
T PRK13943         71 LFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF-  147 (322)
T ss_pred             HHHHhcCCC--CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc-
Confidence            344444333  478999999999999999987543   69999999999999999999999988999999987654321 


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                         ..||+|+++......   ....++.++++|.+++..
T Consensus       148 ---~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        148 ---APYDVIFVTVGVDEV---PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ---CCccEEEECCchHHh---HHHHHHhcCCCCEEEEEe
Confidence               369999997532222   122345678899877654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.33  E-value=1.5e-11  Score=100.74  Aligned_cols=93  Identities=23%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.|++.|+++       +++++++|+.++..     .+.||+|+++
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-----~~~fD~v~~~   96 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP-----KPDTDVVVSN   96 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC-----CCCceEEEEe
Confidence            4689999999999999999876  45999999999999999763       47899999976532     2479999998


Q ss_pred             CCC--CCccHHHHHH-HHhCCCCcEEEEee
Q 043853          145 PNR--PGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~--~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      ...  -.-...++.. .+.++|+|.+++..
T Consensus        97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         97 AALQWVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             hhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence            741  1112344444 44589999988764

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.33  E-value=5.5e-11  Score=95.98  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=96.8

Q ss_pred             cCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 043853           38 SANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA  117 (222)
Q Consensus        38 ~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v  117 (222)
                      ++.++.+.+..+....++++...+...  ++.+|||+|||+|.++..+++.+.+++++|.++.+++.+++++...+. ++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~   97 (233)
T PRK05134         21 DPNGEFKPLHRINPLRLNYIREHAGGL--FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-KI   97 (233)
T ss_pred             ccCCCcHHHHHhhHHHHHHHHHhccCC--CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-ce
Confidence            567778777777777778777776433  478999999999999998888778999999999999999999887766 47


Q ss_pred             EEEeCchhchhhhcCCCCCCCcEEEECCC--CCCccHHHHHHHH-hCCCCcEEEEeeC
Q 043853          118 TFVQGDLNKIGGDFGNAFPKPDIVISDPN--RPGMHMKLIKFLL-KLKAPRIVYVSCN  172 (222)
Q Consensus       118 ~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~-~l~~~~~v~~~~~  172 (222)
                      ++...|+.+.....   .+.||+|++...  ...-...+++.+. .++++|.++++..
T Consensus        98 ~~~~~~~~~~~~~~---~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134         98 DYRQTTAEELAAEH---PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             EEEecCHHHhhhhc---CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            88888887765321   248999988642  1112234445443 3789998887653

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.32  E-value=5.1e-11  Score=100.06  Aligned_cols=103  Identities=25%  Similarity=0.246  Sum_probs=75.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNN-----ISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      ++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|+++++..+     ..++++..+|+.++.       +.||+|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~-------~~fD~V  216 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS-------GKYDTV  216 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC-------CCcCEE
Confidence            36799999999999999999888899999999999999999987652     235788889976531       479998


Q ss_pred             EECC-----CCCCccHHHHHHHHhCCCCcEEEEeeCccchHh
Q 043853          142 ISDP-----NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR  178 (222)
Q Consensus       142 i~~p-----p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~  178 (222)
                      ++.-     |... ...++..+..+.+++ +++++.+.+...
T Consensus       217 v~~~vL~H~p~~~-~~~ll~~l~~l~~g~-liIs~~p~~~~~  256 (315)
T PLN02585        217 TCLDVLIHYPQDK-ADGMIAHLASLAEKR-LIISFAPKTLYY  256 (315)
T ss_pred             EEcCEEEecCHHH-HHHHHHHHHhhcCCE-EEEEeCCcchHH
Confidence            7652     3221 234555565555544 566776655443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.32  E-value=7.6e-11  Score=93.45  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEe-Cc
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQ-GD  123 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~-~d  123 (222)
                      .+-.++.++....     +.++|||+|++.|+-++.+|...   .+++++|.+++..+.|++|+++.|+++ ++++. +|
T Consensus        46 e~g~~L~~L~~~~-----~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd  120 (219)
T COG4122          46 ETGALLRLLARLS-----GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD  120 (219)
T ss_pred             hHHHHHHHHHHhc-----CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence            3444444444442     37899999999999999998754   389999999999999999999999987 88888 59


Q ss_pred             hhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          124 LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       124 ~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      +.+.....  ..+.||+||+|--+..+...+...+..+++||+++++-
T Consensus       121 al~~l~~~--~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         121 ALDVLSRL--LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             HHHHHHhc--cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence            88876641  22589999999876555444444455589999887543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=5.4e-11  Score=95.15  Aligned_cols=125  Identities=22%  Similarity=0.213  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-C--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchh
Q 043853           50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-V--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLN  125 (222)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~  125 (222)
                      .+.....|...+.+.+  +.+|+|.|+|||.++..+|+. +  .++++.|+.++.++.|++|++..++.+ +++..+|+.
T Consensus        79 yPKD~~~I~~~~gi~p--g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~  156 (256)
T COG2519          79 YPKDAGYIVARLGISP--GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR  156 (256)
T ss_pred             cCCCHHHHHHHcCCCC--CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence            3344566666666655  899999999999999999973 2  499999999999999999999999987 999999998


Q ss_pred             chhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh-CCCCcEEEEee-CccchHhhHHHhh
Q 043853          126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSC-NPATCARDLDYLC  184 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~-~~~~~~~~~~~l~  184 (222)
                      +....     +.||.|++|.|.+   .++++.+.. ++|++.+.+-+ +..+..+....+.
T Consensus       157 ~~~~~-----~~vDav~LDmp~P---W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~  209 (256)
T COG2519         157 EGIDE-----EDVDAVFLDLPDP---WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALR  209 (256)
T ss_pred             ccccc-----cccCEEEEcCCCh---HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Confidence            87653     3799999999854   355555544 68887765444 4445555555554

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.31  E-value=2.8e-11  Score=95.12  Aligned_cols=117  Identities=19%  Similarity=0.290  Sum_probs=92.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +...+||||||.|.+.+.+|+..+  .++|+|++...+..|.+.+...+++|+.++++|+..+...+..+ +.+|.|+++
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~-~~v~~i~i~   95 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPP-GSVDRIYIN   95 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTT-TSEEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccC-CchheEEEe
Confidence            355999999999999999998755  99999999999999999999999999999999998876655432 478888776


Q ss_pred             CC----------CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhh
Q 043853          145 PN----------RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLC  184 (222)
Q Consensus       145 pp----------~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~  184 (222)
                      -|          ++-..+.+++.+.. |+++|.+++.++....+.......
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~  146 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQF  146 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHH
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence            54          34567888888766 899999999999888887765444

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1e-11  Score=90.74  Aligned_cols=110  Identities=22%  Similarity=0.327  Sum_probs=86.2

Q ss_pred             ccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe
Q 043853           43 FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQ  121 (222)
Q Consensus        43 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~  121 (222)
                      |++.++.+.-+...+.+...-  -++++++|+|||.|-++++.+.. ...++|+|++|++++.+++|+....++ +++.+
T Consensus        26 Y~T~p~iAasM~~~Ih~Tygd--iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLq  102 (185)
T KOG3420|consen   26 YPTRPHIAASMLYTIHNTYGD--IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQ  102 (185)
T ss_pred             CCCcHHHHHHHHHHHHhhhcc--ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheee
Confidence            456677888777877776531  24799999999999999877764 458999999999999999999998884 79999


Q ss_pred             CchhchhhhcCCCCCCCcEEEECCC----CCCccHHHHHHHH
Q 043853          122 GDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKFLL  159 (222)
Q Consensus       122 ~d~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~~~~l~  159 (222)
                      +|+.+....    ...||.++.|||    ..+...++++...
T Consensus       103 cdildle~~----~g~fDtaviNppFGTk~~~aDm~fv~~al  140 (185)
T KOG3420|consen  103 CDILDLELK----GGIFDTAVINPPFGTKKKGADMEFVSAAL  140 (185)
T ss_pred             eeccchhcc----CCeEeeEEecCCCCcccccccHHHHHHHH
Confidence            999887553    258999999999    2344455555443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.31  E-value=1e-10  Score=93.54  Aligned_cols=71  Identities=28%  Similarity=0.349  Sum_probs=62.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..++....+++|+|+|+.+++.|++++...+.. ++++.++|+.+..       +.||+|++.
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~fD~ii~~  126 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-------GEFDIVVCM  126 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-------CCcCEEEEh
Confidence            4789999999999999999887789999999999999999999887763 5999999997754       379999874

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.31  E-value=4.2e-11  Score=98.15  Aligned_cols=95  Identities=20%  Similarity=0.308  Sum_probs=73.3

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+++.     ++++++.+|+.++..     .+.||+|+++
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~-----~~~fD~v~~~  100 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP-----PQALDLIFAN  100 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC-----CCCccEEEEc
Confidence            4789999999999999988875  359999999999999999874     468899999976542     1479999998


Q ss_pred             CCC--CCccHHHHHHH-HhCCCCcEEEEee
Q 043853          145 PNR--PGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~--~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      ...  ..-...++..+ +.++++|.+.+..
T Consensus       101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             cChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence            752  21223444444 4489999988765

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.31  E-value=6.9e-11  Score=96.78  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=85.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFG  132 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~  132 (222)
                      +.+.+.+.+.+  ++++||+|||-|.+++.+|+. +.+|+|+++|+++.+.+++.++..|++ +++++..|..++..   
T Consensus        62 ~~~~~kl~L~~--G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e---  136 (283)
T COG2230          62 DLILEKLGLKP--GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE---  136 (283)
T ss_pred             HHHHHhcCCCC--CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc---
Confidence            44445555554  999999999999999999987 579999999999999999999999998 69999999988764   


Q ss_pred             CCCCCCcEEEECCC-----CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          133 NAFPKPDIVISDPN-----RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       133 ~~~~~fD~ii~~pp-----~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                          +||-|++---     ... .+.+.+.+.. |+++|.+.+.+
T Consensus       137 ----~fDrIvSvgmfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         137 ----PFDRIVSVGMFEHVGKEN-YDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             ----ccceeeehhhHHHhCccc-HHHHHHHHHhhcCCCceEEEEE
Confidence                5999988542     112 3455555544 78888877665

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.30  E-value=2.6e-11  Score=102.67  Aligned_cols=95  Identities=29%  Similarity=0.421  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC------------------------------------
Q 043853           47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK------------------------------------   90 (222)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~------------------------------------   90 (222)
                      .++.+.+...+..+..-.+  ++.++|..||+|++.+..|..+.                                    
T Consensus       173 ApLketLAaAil~lagw~~--~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~  250 (381)
T COG0116         173 APLKETLAAAILLLAGWKP--DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR  250 (381)
T ss_pred             CCchHHHHHHHHHHcCCCC--CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence            3577888777777765443  57999999999999998776543                                    


Q ss_pred             -----eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           91 -----HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        91 -----~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                           .++|+|+|+.+++.|+.|++..|+.+ ++|.++|+..+....    ..+|++|+|||+
T Consensus       251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~----~~~gvvI~NPPY  309 (381)
T COG0116         251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL----EEYGVVISNPPY  309 (381)
T ss_pred             cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC----CcCCEEEeCCCc
Confidence                 37799999999999999999999987 999999999887643    479999999993

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.30  E-value=4.3e-11  Score=98.85  Aligned_cols=101  Identities=26%  Similarity=0.267  Sum_probs=77.4

Q ss_pred             CCCeEEEEecccchhHHHHhhc-C--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-V--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|..++.+++. +  .+++|+|+++.+++.|+++....+.+++++..+|+.+++.    +.+.||+|++
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~----~~~~fD~Vi~  152 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV----ADNSVDVIIS  152 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC----CCCceeEEEE
Confidence            5789999999999988766653 2  3799999999999999999999888889999999977643    1247999998


Q ss_pred             CCC---CCCccHHHHHHHHhCCCCcEEEEee
Q 043853          144 DPN---RPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp---~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      +..   ..+...-+.+..+.++|+|.++++.
T Consensus       153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        153 NCVINLSPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             cCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            753   1122233334445589999988753

>PTZ00146 fibrillarin; Provisional

Probab=99.29  E-value=2.3e-10  Score=94.34  Aligned_cols=143  Identities=20%  Similarity=0.147  Sum_probs=90.4

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|+++..+++..   ..|+++|+++.+.+...+.++..  +|+.++.+|+.... .+....+.||+|+
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~-~y~~~~~~vDvV~  207 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQ-KYRMLVPMVDVIF  207 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChh-hhhcccCCCCEEE
Confidence            457899999999999999999864   48999999998765555544322  46889999986431 1111123699999


Q ss_pred             ECCCCCCccHHHHHHH-HhCCCCcEEEEeeCc----------cchHhhHHHhhccCCCCccCCCeEEeEeeeeccCC-CC
Q 043853          143 SDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNP----------ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFP-HT  210 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~~  210 (222)
                      +|....+-...+...+ ..|++++.+++....          ..+..+++.|.        +.+|+..+..  ++-| +.
T Consensus       208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~--------~~GF~~~e~v--~L~Py~~  277 (293)
T PTZ00146        208 ADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLK--------KEGLKPKEQL--TLEPFER  277 (293)
T ss_pred             EeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHH--------HcCCceEEEE--ecCCccC
Confidence            9975332222333333 348999998875521          11233344553        5577766543  4444 44


Q ss_pred             CceeEEEEEEe
Q 043853          211 PHIECVCLLEL  221 (222)
Q Consensus       211 ~~~~~v~~~~~  221 (222)
                      .|.-.|..+.+
T Consensus       278 ~h~~v~~~~~~  288 (293)
T PTZ00146        278 DHAVVIGVYRP  288 (293)
T ss_pred             CcEEEEEEEcC
Confidence            56666666543

>PRK04457 spermidine synthase; Provisional

Probab=99.29  E-value=1.4e-10  Score=95.28  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=83.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++..  .+++++|+||.+++.|++++...+. ++++++.+|+.++.....   .+||+|++
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~---~~yD~I~~  142 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR---HSTDVILV  142 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC---CCCCEEEE
Confidence            35789999999999999887754  4899999999999999999876543 469999999988765432   47999999


Q ss_pred             CCCCC-C-----ccHHHHHHHHh-CCCCcEEEEeeC--ccchHhhHHHhh
Q 043853          144 DPNRP-G-----MHMKLIKFLLK-LKAPRIVYVSCN--PATCARDLDYLC  184 (222)
Q Consensus       144 ~pp~~-~-----~~~~~~~~l~~-l~~~~~v~~~~~--~~~~~~~~~~l~  184 (222)
                      |.... .     ...++.+.+.. ++|+|++.+...  .......++.+.
T Consensus       143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~  192 (262)
T PRK04457        143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLE  192 (262)
T ss_pred             eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHH
Confidence            85321 1     22566666544 899999887432  222333445554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.28  E-value=1.3e-10  Score=94.32  Aligned_cols=103  Identities=9%  Similarity=0.054  Sum_probs=83.8

Q ss_pred             CCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC---CCCCcE
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA---FPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~---~~~fD~  140 (222)
                      .++|||+|+++|+-++++|...   .+++++|.+++..+.|+++++..|+.+ ++++.+|+.+....+...   .++||+
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~  159 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF  159 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence            6799999999999999998753   499999999999999999999999865 999999999987665321   248999


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ||+|-.+..+...+...+..+++||+++++
T Consensus       160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        160 IFVDADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             EEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            999987665544444445668899987754

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.26  E-value=2.1e-10  Score=100.60  Aligned_cols=82  Identities=15%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|+.+..+++..  .+++|+|+++.+++.+++|++..|++. +++..+|.......  .+...||.|+
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~--~~~~~fD~Vl  314 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW--AENEQFDRIL  314 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc--ccccccCEEE
Confidence            347899999999999999888753  599999999999999999999999862 34466776543321  0124799999


Q ss_pred             ECCCCCC
Q 043853          143 SDPNRPG  149 (222)
Q Consensus       143 ~~pp~~~  149 (222)
                      +|+|..+
T Consensus       315 lDaPcSg  321 (426)
T TIGR00563       315 LDAPCSA  321 (426)
T ss_pred             EcCCCCC
Confidence            9999554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG2730 consensus Methylase [General function prediction only]

Probab=99.26  E-value=1.4e-11  Score=96.07  Aligned_cols=111  Identities=23%  Similarity=0.386  Sum_probs=86.5

Q ss_pred             EEEcCCccccCCH-HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcC
Q 043853           35 FQISANSFFQTNT-HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNN  113 (222)
Q Consensus        35 ~~~~~~~f~~~~~-~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~  113 (222)
                      ..++..+|+.-.+ +.+..+...+....     ....|+|.+||.|+.++.+|..++.|++||+||.-+..|++|++-.|
T Consensus        66 i~md~e~wfsvTpe~ia~~iA~~v~~~~-----~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYG  140 (263)
T KOG2730|consen   66 IYMDREGWFSVTPEKIAEHIANRVVACM-----NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYG  140 (263)
T ss_pred             eeecccceEEeccHHHHHHHHHHHHHhc-----CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeec
Confidence            5556666554333 34544444443332     36789999999999999999999999999999999999999999999


Q ss_pred             CCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc
Q 043853          114 ISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM  150 (222)
Q Consensus       114 ~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~  150 (222)
                      +++ ++|++||+.+....+..+...+|+++..||+.+.
T Consensus       141 I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp  178 (263)
T KOG2730|consen  141 VPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGP  178 (263)
T ss_pred             CCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence            986 9999999998876654444568899999996553

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.25  E-value=2.2e-10  Score=92.73  Aligned_cols=138  Identities=21%  Similarity=0.142  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchh
Q 043853           50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLN  125 (222)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~  125 (222)
                      ....+.+|...+.+.+  +.+|||.|+|+|.++..+++.   ..+|+..|.+++.++.|++|++.++++ ++++.+.|+.
T Consensus        25 YpkD~~~I~~~l~i~p--G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~  102 (247)
T PF08704_consen   25 YPKDISYILMRLDIRP--GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC  102 (247)
T ss_dssp             -HHHHHHHHHHTT--T--T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred             eCchHHHHHHHcCCCC--CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence            3444666777776665  999999999999999999974   249999999999999999999999997 5999999996


Q ss_pred             chhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhC-CCCcEEE-EeeCccchHhhHHHhhccCCCCccCCCeEEeE
Q 043853          126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKL-KAPRIVY-VSCNPATCARDLDYLCHGVGDQNIKGCYKLKS  200 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l-~~~~~v~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  200 (222)
                      +-..... ....+|.||+|.|.+.  ..+-.....| +++|.+. ++-+-.+..+.+..+.        +.||....
T Consensus       103 ~~g~~~~-~~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~--------~~gf~~i~  168 (247)
T PF08704_consen  103 EEGFDEE-LESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR--------EHGFTDIE  168 (247)
T ss_dssp             CG--STT--TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH--------HTTEEEEE
T ss_pred             ccccccc-ccCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH--------HCCCeeeE
Confidence            4322111 1147999999998553  2223333345 5666654 3445666666777775        45665444

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.25  E-value=1.7e-11  Score=98.07  Aligned_cols=96  Identities=20%  Similarity=0.300  Sum_probs=73.7

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC------cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS------NATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~------~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      +++|||+|||.|.++..||+.+.+|+|+|.++.|++.|++.....-..      ++++.+.|++...       +.||.|
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-------~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-------GKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------ccccee
Confidence            578999999999999999999999999999999999999984433221      2567777777654       369999


Q ss_pred             EECCC---CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          142 ISDPN---RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp---~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ++.--   -.. ...+++.+. .++|+|.+++++
T Consensus       163 vcsevleHV~d-p~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  163 VCSEVLEHVKD-PQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             eeHHHHHHHhC-HHHHHHHHHHHhCCCCceEeee
Confidence            99642   111 245555544 479999999887

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.25  E-value=1.8e-10  Score=92.25  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=96.9

Q ss_pred             CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ...+||||||.|.+.+.+|+..+  .++|||+....+..|.+.+...+++|+.+++.|+.++...+..+ +..|-|+++-
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~-~sl~~I~i~F  127 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPD-GSLDKIYINF  127 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCC-CCeeEEEEEC
Confidence            36899999999999999999876  89999999999999999999999989999999999998876643 3677776665


Q ss_pred             C----------CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhh-HHHh
Q 043853          146 N----------RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARD-LDYL  183 (222)
Q Consensus       146 p----------~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~-~~~l  183 (222)
                      |          |+-..+.+++.+.. |+++|.+++.++....+.. +...
T Consensus       128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~  177 (227)
T COG0220         128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEV  177 (227)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHH
Confidence            4          44567888888765 8999999999998887777 4444

>PLN03075 nicotianamine synthase; Provisional

Probab=99.24  E-value=1.2e-09  Score=90.38  Aligned_cols=142  Identities=16%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             CCCeEEEEecccchhHH-HHh-hcC--CeEEEEeCCHHHHHHHHHHHHH-cCCCc-EEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGL-TLA-RWV--KHVYGYEVVPQAISDACRNAKL-NNISN-ATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~-~la-~~~--~~v~gvD~~~~~i~~a~~n~~~-~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +.++|+|+|||.|.++. .++ ...  .+++|+|+|+.+++.|+++++. .++.+ ++|..+|+.+....    ...||+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~----l~~FDl  198 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES----LKEYDV  198 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc----cCCcCE
Confidence            46899999999876544 444 333  3799999999999999999965 77765 99999999885322    247999


Q ss_pred             EEECCC---CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEE
Q 043853          141 VISDPN---RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV  216 (222)
Q Consensus       141 ii~~pp---~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v  216 (222)
                      |++.--   ...-..++++.+.+ ++|||++++-+..    ...+.++..+....+. ||++..    .+.|....+-.|
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~----G~r~~LYp~v~~~~~~-gf~~~~----~~~P~~~v~Nsv  269 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH----GARAFLYPVVDPCDLR-GFEVLS----VFHPTDEVINSV  269 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCCcEEEEeccc----chHhhcCCCCChhhCC-CeEEEE----EECCCCCceeeE
Confidence            999831   12345677777655 8999999877521    1122222222212222 665544    345666666666


Q ss_pred             EEEEe
Q 043853          217 CLLEL  221 (222)
Q Consensus       217 ~~~~~  221 (222)
                      .++++
T Consensus       270 i~~r~  274 (296)
T PLN03075        270 IIARK  274 (296)
T ss_pred             EEEEe
Confidence            66554

>TIGR00452 methyltransferase, putative

Probab=99.23  E-value=4.3e-10  Score=94.39  Aligned_cols=99  Identities=16%  Similarity=0.094  Sum_probs=72.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++++|||+|||+|.++..++..+. .++|+|.|+.++..++...+..+ ..++.+..+++.+++..     ..||+|++.
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-----~~FD~V~s~  195 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-----YAFDTVFSM  195 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-----CCcCEEEEc
Confidence            478999999999999998877654 79999999999987654333222 23588888998876532     379999987


Q ss_pred             CC---CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          145 PN---RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       145 pp---~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      -.   +... ..++..+. .++++|.+++++
T Consensus       196 gvL~H~~dp-~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       196 GVLYHRKSP-LEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             chhhccCCH-HHHHHHHHHhcCCCCEEEEEE
Confidence            52   3333 34555554 489999988764

Known examples to date are restricted to the proteobacteria.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.22  E-value=2e-11  Score=84.05  Aligned_cols=91  Identities=23%  Similarity=0.289  Sum_probs=67.7

Q ss_pred             EEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC--CC
Q 043853           72 LDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN--RP  148 (222)
Q Consensus        72 lDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--~~  148 (222)
                      ||+|||+|..+..+++. ..+++++|.++.+++.++++....   ++.+.++|+.+++..    ++.||+|++.--  .-
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~----~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP----DNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-----TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc----cccccccccccceeec
Confidence            79999999999999988 779999999999999999987643   356999999888653    358999998753  11


Q ss_pred             CccHHHHHHHH-hCCCCcEEEE
Q 043853          149 GMHMKLIKFLL-KLKAPRIVYV  169 (222)
Q Consensus       149 ~~~~~~~~~l~-~l~~~~~v~~  169 (222)
                      .-...+++.+. .++|+|.+++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            22344555554 4889998874

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.22  E-value=1.5e-10  Score=95.16  Aligned_cols=98  Identities=19%  Similarity=0.114  Sum_probs=73.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|+++...  .+++++..+|+.+.+.    +.+.||+|++..
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~----~~~~FD~V~s~~  125 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDF----PENTFDMIYSRD  125 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCC----CCCCeEEEEEhh
Confidence            4789999999999999988764 45999999999999999998754  2359999999876432    224799999853


Q ss_pred             C-----CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          146 N-----RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       146 p-----~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .     ... ...+++.+ +.++|+|.++++.
T Consensus       126 ~l~h~~~~d-~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        126 AILHLSYAD-KKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             hHHhCCHHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence            2     112 23444444 4489999988764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.22  E-value=2.1e-10  Score=106.18  Aligned_cols=130  Identities=22%  Similarity=0.243  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---------------------------------------
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---------------------------------------   88 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---------------------------------------   88 (222)
                      ++.+.+...+..+..-. .++..++|++||+|++.+..|..                                       
T Consensus       172 pl~etlAaa~l~~a~w~-~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        172 PLKENLAAAILLRSGWP-QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CCcHHHHHHHHHHcCCC-CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            46677777676665432 23689999999999999966542                                       


Q ss_pred             -----CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCC---Cc-------cH
Q 043853           89 -----VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP---GM-------HM  152 (222)
Q Consensus        89 -----~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~---~~-------~~  152 (222)
                           ..+++|+|+++.+++.|++|+..+|+.+ +++.++|+.++.....  .+.||+|++|||+.   +.       ..
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~--~~~~d~IvtNPPYg~r~~~~~~l~~lY~  328 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP--KGPTGLVISNPPYGERLGEEPALIALYS  328 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc--cCCCCEEEECCCCcCccCchHHHHHHHH
Confidence                 1268999999999999999999999976 9999999988754321  13699999999942   21       22


Q ss_pred             HHHHHHHhCCCCcEEEEeeCccchHhhH
Q 043853          153 KLIKFLLKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       153 ~~~~~l~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                      .+.+.++...++..+++-+....+.+.+
T Consensus       329 ~lg~~lk~~~~g~~~~llt~~~~l~~~~  356 (702)
T PRK11783        329 QLGRRLKQQFGGWNAALFSSSPELLSCL  356 (702)
T ss_pred             HHHHHHHHhCCCCeEEEEeCCHHHHHHh
Confidence            2333444444666666555554444444

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.21  E-value=4.8e-11  Score=83.86  Aligned_cols=68  Identities=31%  Similarity=0.437  Sum_probs=57.4

Q ss_pred             EEEEecccchhHHHHhhcC-----CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           71 VLDLFCGTGTIGLTLARWV-----KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        71 vlDlg~G~G~~~~~la~~~-----~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      |||+|||+|..+..+++..     .+++|+|+|+.|++.++++.+..+. +++++++|+.++...    .++||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~----~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS----DGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH----SSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc----CCCeeEEEE
Confidence            7999999999999988764     6999999999999999999988766 699999999987643    248999999

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.21  E-value=4e-10  Score=95.24  Aligned_cols=99  Identities=18%  Similarity=0.118  Sum_probs=72.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..++..+. .|+|+|.|+.++..++...+..+. .+++++.+|+.+++.     .+.||+|++.
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-----~~~FD~V~s~  196 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-----LKAFDTVFSM  196 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-----cCCcCEEEEC
Confidence            468999999999999999887654 799999999999876554443332 359999999988754     1479999986


Q ss_pred             CC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          145 PN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      --   ..+. ..+++.+ +.++|+|.+++++
T Consensus       197 ~vl~H~~dp-~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        197 GVLYHRRSP-LDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ChhhccCCH-HHHHHHHHHhcCCCcEEEEEE
Confidence            42   2233 3444444 4489999988764

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.21  E-value=1.8e-10  Score=94.29  Aligned_cols=95  Identities=22%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++++..  .++++++++|+.+.+..   
T Consensus        18 ~~~i~~~~~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~---   90 (253)
T TIGR00755        18 IQKIVEAANVL--EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP---   90 (253)
T ss_pred             HHHHHHhcCCC--CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh---
Confidence            33344444332  478999999999999999999888999999999999999988743  34699999999887543   


Q ss_pred             CCCCCc---EEEECCCCCCccHHHHHHHH
Q 043853          134 AFPKPD---IVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus       134 ~~~~fD---~ii~~pp~~~~~~~~~~~l~  159 (222)
                         .+|   +|++|+|+... ..++..+.
T Consensus        91 ---~~d~~~~vvsNlPy~i~-~~il~~ll  115 (253)
T TIGR00755        91 ---DFPKQLKVVSNLPYNIS-SPLIFKLL  115 (253)
T ss_pred             ---HcCCcceEEEcCChhhH-HHHHHHHh
Confidence               355   99999996543 44454444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.20  E-value=6e-11  Score=91.75  Aligned_cols=98  Identities=13%  Similarity=0.176  Sum_probs=69.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      .-.++||+|||.|.++..||..+..++++|+++.+++.|++.+..  .++|++++.|+.++.+.     +.||+|++.--
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P~-----~~FDLIV~SEV  115 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWPE-----GRFDLIVLSEV  115 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---S-----S-EEEEEEES-
T ss_pred             ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCCC-----CCeeEEEEehH
Confidence            357899999999999999999999999999999999999998863  56899999999776532     58999988753


Q ss_pred             --CCC---ccHHHHHHH-HhCCCCcEEEEee
Q 043853          147 --RPG---MHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       147 --~~~---~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                        +-.   ....+++.+ ..+.|+|.+++..
T Consensus       116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence              111   112333333 3488999888655

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1.2e-09  Score=83.00  Aligned_cols=120  Identities=20%  Similarity=0.286  Sum_probs=87.5

Q ss_pred             CCeEEEEecccchhHHHHhhc-CC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW-VK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~-~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ...++|+|||+|..+..++.. ++  ...++|+||++++..++.++.|++ +++.++.|+.+....     ++.|+++.|
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~-----~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN-----ESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc-----CCccEEEEC
Confidence            578999999999999988874 22  678999999999999999999988 489999999887764     589999999


Q ss_pred             CCCC-------------------CccHHHHHHHHh-----CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeE
Q 043853          145 PNRP-------------------GMHMKLIKFLLK-----LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS  200 (222)
Q Consensus       145 pp~~-------------------~~~~~~~~~l~~-----l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  200 (222)
                      ||+.                   .....+.+.+..     +.|.|++|+-........++-.+.+       +.||....
T Consensus       118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~-------~~g~~~~~  190 (209)
T KOG3191|consen  118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE-------KKGYGVRI  190 (209)
T ss_pred             CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh-------hcccceeE
Confidence            9821                   011233333332     5789999977655444455443333       55665544

>PRK00811 spermidine synthase; Provisional

Probab=99.19  E-value=7.5e-10  Score=92.01  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=77.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN-----ISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      +.++||++|||.|..+..+++.  ..+|+++|+|+.+++.|++++...+     .++++++.+|+.++...   ..++||
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yD  152 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFD  152 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCccc
Confidence            4679999999999999988765  3589999999999999999986532     34699999999887654   225899


Q ss_pred             EEEECCCCC-C-----ccHHHHHHHH-hCCCCcEEEEee
Q 043853          140 IVISDPNRP-G-----MHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~~-~-----~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      +|++|.+.. +     ...++.+.++ .|+++|++.+.+
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            999985311 1     1234444443 489999887654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.18  E-value=2.5e-10  Score=91.50  Aligned_cols=98  Identities=19%  Similarity=0.176  Sum_probs=74.5

Q ss_pred             CeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           69 EIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++|||+|||+|.++..+++..  .+++|+|+|+.+++.+++++...+++. ++++.+|..+.+..     +.||+|++.-
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-----~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-----DTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-----CCCCEeehHH
Confidence            379999999999999888754  489999999999999999999888764 89999998654321     3799998743


Q ss_pred             C--CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          146 N--RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       146 p--~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .  ...-...+++.+.. ++|+|.+++..
T Consensus        76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       76 VIHHIKDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            1  11113455555544 89999988654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.18  E-value=4.3e-10  Score=99.96  Aligned_cols=99  Identities=24%  Similarity=0.178  Sum_probs=75.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|..++.+++. +.+++|+|+|+.+++.|+++....+ .++++.++|+.+.+.    +.+.||+|++..
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~----~~~~fD~I~s~~  340 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTY----PDNSFDVIYSRD  340 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCC----CCCCEEEEEECC
Confidence            4779999999999999988874 5699999999999999999876433 259999999977543    124799999864


Q ss_pred             C---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          146 N---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       146 p---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .   ... ...+++.+ +.++|+|.++++.
T Consensus       341 ~l~h~~d-~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        341 TILHIQD-KPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             cccccCC-HHHHHHHHHHHcCCCeEEEEEE
Confidence            2   222 24455544 4489999988764

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.18  E-value=4.1e-10  Score=89.18  Aligned_cols=69  Identities=26%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|..+..+++.  ..+++|+|+|+.|++.|+++.     +++++.++|+.+ +.    +.+.||+|+++
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~----~~~sfD~V~~~  112 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PF----KDNFFDLVLTK  112 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CC----CCCCEEEEEEC
Confidence            4678999999999999988875  469999999999999999874     346788888876 22    22589999986


Q ss_pred             C
Q 043853          145 P  145 (222)
Q Consensus       145 p  145 (222)
                      -
T Consensus       113 ~  113 (204)
T TIGR03587       113 G  113 (204)
T ss_pred             C
Confidence            5

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.18  E-value=1.3e-09  Score=92.21  Aligned_cols=112  Identities=21%  Similarity=0.174  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG  128 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~  128 (222)
                      +.+.+.+.+..... .++.+|||+|||+|.++..+++.  ..+++++|.|+.|++.|+++...   .+++++.+|+.+..
T Consensus        98 e~~r~~~l~~~~l~-~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp  173 (340)
T PLN02490         98 EDMRDDALEPADLS-DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLP  173 (340)
T ss_pred             HHHHHHHHhhcccC-CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCC
Confidence            33444444443332 24679999999999999988764  35899999999999999998652   35789999998764


Q ss_pred             hhcCCCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          129 GDFGNAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      ..    .+.||+|+++..   ..+. ..+++.+ +.++++|.+++..
T Consensus       174 ~~----~~sFDvVIs~~~L~~~~d~-~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        174 FP----TDYADRYVSAGSIEYWPDP-QRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             CC----CCceeEEEEcChhhhCCCH-HHHHHHHHHhcCCCcEEEEEE
Confidence            32    247999998753   1222 3444444 4489999876643

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.18  E-value=6.4e-10  Score=89.53  Aligned_cols=96  Identities=21%  Similarity=0.283  Sum_probs=73.1

Q ss_pred             CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ..+|||+|||+|.++..+++..+  +++++|+++.+++.++++..    ++++++.+|+.+.+..    .+.||+|+++.
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~----~~~fD~vi~~~  106 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLE----DSSFDLIVSNL  106 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCC----CCceeEEEEhh
Confidence            46899999999999998887654  68999999999999988764    3688999999876531    24799999975


Q ss_pred             C--CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          146 N--RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       146 p--~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .  ...-...+++.+.+ ++++|.++++.
T Consensus       107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       107 ALQWCDDLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            4  11123455555544 79999988765

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PHA03411 putative methyltransferase; Provisional

Probab=99.17  E-value=1.2e-10  Score=95.02  Aligned_cols=70  Identities=24%  Similarity=0.357  Sum_probs=59.1

Q ss_pred             CCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ..+|||+|||+|.+++.++..  ..+++|+|+|+.+++.++++.     ++++++++|+.++...     .+||+|++||
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~-----~kFDlIIsNP  134 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESN-----EKFDVVISNP  134 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhccc-----CCCcEEEEcC
Confidence            468999999999999988764  359999999999999999874     3688999999876521     4799999999


Q ss_pred             CC
Q 043853          146 NR  147 (222)
Q Consensus       146 p~  147 (222)
                      |+
T Consensus       135 PF  136 (279)
T PHA03411        135 PF  136 (279)
T ss_pred             Cc
Confidence            93

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.17  E-value=1.3e-09  Score=87.61  Aligned_cols=95  Identities=24%  Similarity=0.386  Sum_probs=70.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++.+..++|+|+|+.+++.|++++...+. +++++..+|+...       .+.||+|++.-
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~fD~v~~~~  135 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-------LGRFDTVVCLD  135 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-------cCCcCEEEEcc
Confidence            367999999999999999988878999999999999999999988777 3589999994321       14799998753


Q ss_pred             CC----CCccHHHHHHHHhCCCCcEEE
Q 043853          146 NR----PGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       146 p~----~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      ..    ......+++.+..+.+++.++
T Consensus       136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580        136 VLIHYPQEDAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             hhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence            21    111234555555544555443

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.16  E-value=1.9e-10  Score=91.70  Aligned_cols=100  Identities=19%  Similarity=0.126  Sum_probs=68.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc------------CCCcEEEEeCchhchhhhcCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN------------NISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~------------~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      ++.+|||+|||.|..++.+|+++.+|+|+|+|+.+++.+.......            .-.++++.++|+.++.....  
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~--  111 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL--  111 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC--
Confidence            3579999999999999999999999999999999999864322110            11248999999988754221  


Q ss_pred             CCCCcEEEEC-----CCCCCccHHHHHHHH-hCCCCcEEEEe
Q 043853          135 FPKPDIVISD-----PNRPGMHMKLIKFLL-KLKAPRIVYVS  170 (222)
Q Consensus       135 ~~~fD~ii~~-----pp~~~~~~~~~~~l~-~l~~~~~v~~~  170 (222)
                       ..||.|+-.     .|. .........+. .++|+|.+++.
T Consensus       112 -~~fD~i~D~~~~~~l~~-~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       112 -GPVDAVYDRAALIALPE-EMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             -CCcCEEEechhhccCCH-HHHHHHHHHHHHHcCCCCeEEEE
Confidence             367876532     221 22233444444 37899865444

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.15  E-value=9.7e-10  Score=90.88  Aligned_cols=94  Identities=19%  Similarity=0.194  Sum_probs=69.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-----CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-----KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-----~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      +..+|||+|||+|.++..+++..     ..++|+|+|+.+++.|+++.     +++.+..+|+.+++..    .+.||+|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~----~~sfD~I  155 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFA----DQSLDAI  155 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCc----CCceeEE
Confidence            35789999999999999887643     26899999999999998753     4688999998876532    2479999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      ++.... ..   ..+..+.++|+|.+++.+..
T Consensus       156 ~~~~~~-~~---~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        156 IRIYAP-CK---AEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             EEecCC-CC---HHHHHhhccCCCEEEEEeCC
Confidence            875431 11   12233447899988876644

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.14  E-value=3e-10  Score=88.59  Aligned_cols=95  Identities=23%  Similarity=0.335  Sum_probs=75.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ...+|.|+|||+|..+-.++++.+  .++|+|.|+.|++.|+..     +++++|..+|+.++...     ...|++++|
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~-----~~~dllfaN   99 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPE-----QPTDLLFAN   99 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCC-----Cccchhhhh
Confidence            367999999999999999998754  999999999999999775     46899999999998653     479999999


Q ss_pred             CC--CCCccH-HHHHHHHhCCCCcEEEEee
Q 043853          145 PN--RPGMHM-KLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp--~~~~~~-~~~~~l~~l~~~~~v~~~~  171 (222)
                      ..  +-.-+. -+...+..+.|||++-+.-
T Consensus       100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm  129 (257)
T COG4106         100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQM  129 (257)
T ss_pred             hhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence            64  111123 3344455689999987665

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.13  E-value=1e-09  Score=75.78  Aligned_cols=98  Identities=29%  Similarity=0.356  Sum_probs=74.7

Q ss_pred             eEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853           70 IVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP  148 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~  148 (222)
                      +++|+|||+|.++..+++ ...+++++|.++.+++.+++.....+..++++..+|+.+....   ....||+++++++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE---ADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc---cCCceEEEEEcccee
Confidence            489999999999998887 5569999999999999999765555555699999999887541   124799999998743


Q ss_pred             ---CccHHHHHHHH-hCCCCcEEEEe
Q 043853          149 ---GMHMKLIKFLL-KLKAPRIVYVS  170 (222)
Q Consensus       149 ---~~~~~~~~~l~-~l~~~~~v~~~  170 (222)
                         .....+++.+. .++++|.++++
T Consensus        78 ~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          78 HLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence               23345555543 37888888765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK06922 hypothetical protein; Provisional

Probab=99.13  E-value=5.3e-10  Score=100.74  Aligned_cols=102  Identities=14%  Similarity=0.183  Sum_probs=75.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++..  .+++|+|+|+.|++.|+++....+. +++++++|+.+++..+.  .+.||+|+++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fe--deSFDvVVsn  494 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFE--KESVDTIVYS  494 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccC--CCCEEEEEEc
Confidence            36799999999999998888754  4999999999999999998876554 58899999987642222  2479999988


Q ss_pred             CCCCC---------------ccHHHHHH-HHhCCCCcEEEEee
Q 043853          145 PNRPG---------------MHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~~---------------~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      ++...               ....++.. .+.++|||.+++..
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            64111               11233333 34589999988764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.12  E-value=1.3e-09  Score=94.26  Aligned_cols=105  Identities=18%  Similarity=0.147  Sum_probs=75.5

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      ..+.+.+...  ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++.  +. ++++..+|..+..     
T Consensus       157 ~~l~~~l~l~--~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l~-----  226 (383)
T PRK11705        157 DLICRKLQLK--PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDLN-----  226 (383)
T ss_pred             HHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhcC-----
Confidence            3444444433  4789999999999999988875 5699999999999999999885  33 3788888876541     


Q ss_pred             CCCCCcEEEECCCCC--C--ccHHHHHHH-HhCCCCcEEEEee
Q 043853          134 AFPKPDIVISDPNRP--G--MHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~--~--~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                        +.||.|++.....  +  ....+++.+ +.++|+|.+++.+
T Consensus       227 --~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        227 --GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             --CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence              4799998865311  1  113444444 3489999988765

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.12  E-value=6.9e-10  Score=85.69  Aligned_cols=88  Identities=25%  Similarity=0.332  Sum_probs=65.8

Q ss_pred             CCCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .++.+|||+|||.|.+...+.+ .....+|+|+++..+..+.++       .+.++++|+.+....+.  ++.||+||++
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~--d~sFD~VIls   82 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFP--DQSFDYVILS   82 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCC--CCCccEEehH
Confidence            4589999999999999998876 456999999999988877653       46799999988776554  3689999998


Q ss_pred             CCCC--CccHHHHHHHHhCC
Q 043853          145 PNRP--GMHMKLIKFLLKLK  162 (222)
Q Consensus       145 pp~~--~~~~~~~~~l~~l~  162 (222)
                      -.-.  .....+++.+.+..
T Consensus        83 qtLQ~~~~P~~vL~EmlRVg  102 (193)
T PF07021_consen   83 QTLQAVRRPDEVLEEMLRVG  102 (193)
T ss_pred             hHHHhHhHHHHHHHHHHHhc
Confidence            6411  11244555554443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK04148 hypothetical protein; Provisional

Probab=99.12  E-value=1.7e-09  Score=79.21  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=79.1

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccch-hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGT-IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~-~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  131 (222)
                      +.+++.+.+...  ++.+++|+|||+|. ++..+++.+..|+|+|+++.+++.++++       .++++.+|+++....+
T Consensus         4 i~~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~   74 (134)
T PRK04148          4 IAEFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEI   74 (134)
T ss_pred             HHHHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHH
Confidence            445555554322  35789999999996 8888998888999999999999988775       3689999998876554


Q ss_pred             CCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEE
Q 043853          132 GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      -   ..+|+|.+.=|..++.+.+++..+.....-+++
T Consensus        75 y---~~a~liysirpp~el~~~~~~la~~~~~~~~i~  108 (134)
T PRK04148         75 Y---KNAKLIYSIRPPRDLQPFILELAKKINVPLIIK  108 (134)
T ss_pred             H---hcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            3   369999887666778888888777666544444

>PRK01581 speE spermidine synthase; Validated

Probab=99.11  E-value=2.6e-09  Score=90.54  Aligned_cols=103  Identities=17%  Similarity=0.047  Sum_probs=75.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHH-----H--cCCCcEEEEeCchhchhhhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAK-----L--NNISNATFVQGDLNKIGGDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~-----~--~~~~~v~~~~~d~~~~~~~~~~~~~~  137 (222)
                      +.++||++|||.|..+..+.+..  .+|+++|+|+++++.|++...     .  ...++++++.+|+.++....   .+.
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---~~~  226 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---SSL  226 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---CCC
Confidence            46799999999999887777654  599999999999999996311     1  12346999999999987542   247


Q ss_pred             CcEEEECCCCCC-------ccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          138 PDIVISDPNRPG-------MHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       138 fD~ii~~pp~~~-------~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      ||+|++|.|...       ...++.+.+.. |+|+|++.....
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            999999976321       12445555544 899998776554

>PRK08317 hypothetical protein; Provisional

Probab=99.11  E-value=3e-09  Score=85.55  Aligned_cols=110  Identities=24%  Similarity=0.154  Sum_probs=77.2

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD  130 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~  130 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++..+++..   .+++|+|.++.+++.++++... ...++++..+|+...+..
T Consensus         8 ~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~   84 (241)
T PRK08317          8 RARTFELLAVQ--PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFP   84 (241)
T ss_pred             HHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCC
Confidence            34444554444  37899999999999999888753   4899999999999999998332 234689999998765432


Q ss_pred             cCCCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          131 FGNAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       131 ~~~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                          .+.||+|++...   ... ...+++.+ ..++++|.+++..
T Consensus        85 ----~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         85 ----DGSFDAVRSDRVLQHLED-PARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             ----CCCceEEEEechhhccCC-HHHHHHHHHHHhcCCcEEEEEe
Confidence                247999988653   122 23444444 3478988876543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.09  E-value=3.6e-09  Score=85.26  Aligned_cols=100  Identities=25%  Similarity=0.250  Sum_probs=74.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..++.. ++.+..+|+.+....    .+.||+|+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~D~I~  126 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP----DNSFDAVT  126 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC----CCCccEEE
Confidence            36799999999999999888754   69999999999999999998775553 489999999876431    24799998


Q ss_pred             ECCC--CCCccHHHHHHH-HhCCCCcEEEEe
Q 043853          143 SDPN--RPGMHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       143 ~~pp--~~~~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                      ++--  .......+++.+ ..++++|.+++.
T Consensus       127 ~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        127 IAFGLRNVPDIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             EecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence            7532  111224445544 447888877654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.5e-08  Score=82.24  Aligned_cols=102  Identities=18%  Similarity=0.122  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD  130 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~  130 (222)
                      ...++.+.+.++..+  ++.|||||+|.|.+|..+++.+.+|+++|+|+.+++..++...  ..++++++++|+......
T Consensus        16 ~~v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          16 KNVIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence            344566666665554  7899999999999999999999999999999999999999875  235799999999887653


Q ss_pred             cCCCCCCCcEEEECCCCCCccHHHHHHHHh
Q 043853          131 FGNAFPKPDIVISDPNRPGMHMKLIKFLLK  160 (222)
Q Consensus       131 ~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~  160 (222)
                      -.   ..++.|++|.|+.-. ..++..+..
T Consensus        92 ~l---~~~~~vVaNlPY~Is-spii~kll~  117 (259)
T COG0030          92 SL---AQPYKVVANLPYNIS-SPILFKLLE  117 (259)
T ss_pred             hh---cCCCEEEEcCCCccc-HHHHHHHHh
Confidence            11   157899999997654 455554443

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.08  E-value=3.1e-09  Score=89.49  Aligned_cols=166  Identities=23%  Similarity=0.336  Sum_probs=94.5

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---------CCeEEEEeCCHHHHHHHHHHHH
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---------VKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---------~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      +.||. +......+.+++    .  +.++.+|+|.+||+|++.+.+.+.         ..+++|+|+++.++..|+-|+.
T Consensus        26 G~~~T-P~~i~~l~~~~~----~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~   98 (311)
T PF02384_consen   26 GQFYT-PREIVDLMVKLL----N--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL   98 (311)
T ss_dssp             GGC----HHHHHHHHHHH----T--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred             ceeeh-HHHHHHHHHhhh----h--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence            34553 355555544444    2  234678999999999999977652         3489999999999999999998


Q ss_pred             HcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-----------------------cHHHHH-HHHhCCCC
Q 043853          111 LNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-----------------------HMKLIK-FLLKLKAP  164 (222)
Q Consensus       111 ~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-----------------------~~~~~~-~l~~l~~~  164 (222)
                      ..+...  ..+..+|........  ....||+|++|||....                       ...++. .+..++++
T Consensus        99 l~~~~~~~~~i~~~d~l~~~~~~--~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~  176 (311)
T PF02384_consen   99 LHGIDNSNINIIQGDSLENDKFI--KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG  176 (311)
T ss_dssp             HTTHHCBGCEEEES-TTTSHSCT--ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE
T ss_pred             hhccccccccccccccccccccc--cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc
Confidence            877643  578899976554321  12479999999994322                       012323 34557776


Q ss_pred             cEE-EEeeC-c---cchHhhHH-HhhccCCCCccCCCe-EEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          165 RIV-YVSCN-P---ATCARDLD-YLCHGVGDQNIKGCY-KLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       165 ~~v-~~~~~-~---~~~~~~~~-~l~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                      |.+ ++..+ .   ......++ .+.        +.++ +-+-.-|-.+|+.+..-.+|.+|.++
T Consensus       177 G~~~~Ilp~~~L~~~~~~~~iR~~ll--------~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~  233 (311)
T PF02384_consen  177 GRAAIILPNGFLFSSSSEKKIRKYLL--------ENGYIEAVISLPSNLFKPTGVPTSILILNKK  233 (311)
T ss_dssp             EEEEEEEEHHHHHGSTHHHHHHHHHH--------HHEEEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred             cceeEEecchhhhccchHHHHHHHHH--------hhchhhEEeecccceecccCcCceEEEEeec
Confidence            654 32221 1   11223343 332        2222 22222355788888888889888763

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK03612 spermidine synthase; Provisional

Probab=99.07  E-value=2.7e-09  Score=95.73  Aligned_cols=103  Identities=19%  Similarity=0.203  Sum_probs=77.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHH--H-c----CCCcEEEEeCchhchhhhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAK--L-N----NISNATFVQGDLNKIGGDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~--~-~----~~~~v~~~~~d~~~~~~~~~~~~~~  137 (222)
                      +.++|||+|||+|..+..+++..  .+++++|+|+++++.++++..  . +    ..++++++.+|+.++.....   ++
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~---~~  373 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA---EK  373 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC---CC
Confidence            46799999999999999887753  599999999999999999532  1 1    12469999999998765422   48


Q ss_pred             CcEEEECCCCCC-------ccHHHHHHHH-hCCCCcEEEEeeC
Q 043853          138 PDIVISDPNRPG-------MHMKLIKFLL-KLKAPRIVYVSCN  172 (222)
Q Consensus       138 fD~ii~~pp~~~-------~~~~~~~~l~-~l~~~~~v~~~~~  172 (222)
                      ||+|++|+|...       ...++.+.++ .++|+|++++...
T Consensus       374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            999999987432       1234555544 4899999887653

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.06  E-value=8.7e-10  Score=88.15  Aligned_cols=98  Identities=21%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc------------CCCcEEEEeCchhchhhhcCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN------------NISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~------------~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      ++.+|||+|||.|..++.+|+.+.+|+|+|+|+.+++.+.......            ...++++.++|+.++....   
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~---  113 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD---  113 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc---
Confidence            3579999999999999999999999999999999999874311100            1134899999998875431   


Q ss_pred             CCCCcEEE-----ECCCCCCccHHHHHHHHh-CCCCcEEE
Q 043853          135 FPKPDIVI-----SDPNRPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       135 ~~~fD~ii-----~~pp~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      ...||.|+     +..| ..........+.. ++|+|.++
T Consensus       114 ~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255        114 LADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             CCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEE
Confidence            23688886     2222 1223445555544 78997544

>PLN02366 spermidine synthase

Probab=99.06  E-value=7.1e-09  Score=86.92  Aligned_cols=103  Identities=16%  Similarity=0.083  Sum_probs=77.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHc--C--CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLN--N--ISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~--~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +.++||++|||.|..+..+++..  .+++.+|+|+.+++.|++.+...  +  -++++++.+|+.++.....  .++||+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDv  168 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDA  168 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCE
Confidence            46899999999999999888763  48999999999999999988653  2  2469999999988765431  247999


Q ss_pred             EEECCCCCC------ccHHHHHHHH-hCCCCcEEEEee
Q 043853          141 VISDPNRPG------MHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~------~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      |++|.+...      ...++.+.+. .|+|+|++...+
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            999864221      1234555554 489999987544

>PRK05785 hypothetical protein; Provisional

Probab=99.06  E-value=2.9e-09  Score=85.67  Aligned_cols=84  Identities=15%  Similarity=0.135  Sum_probs=62.4

Q ss_pred             CCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      +.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|++.        ...+++|+.+++.    +++.||+|++...
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~----~d~sfD~v~~~~~  119 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPF----RDKSFDVVMSSFA  119 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCC----CCCCEEEEEecCh
Confidence            679999999999999999876 46999999999999999864        1356788877654    2358999998764


Q ss_pred             ---CCCccHHHHHHHHh-CCCC
Q 043853          147 ---RPGMHMKLIKFLLK-LKAP  164 (222)
Q Consensus       147 ---~~~~~~~~~~~l~~-l~~~  164 (222)
                         ..+ ....+..+.+ ++|.
T Consensus       120 l~~~~d-~~~~l~e~~RvLkp~  140 (226)
T PRK05785        120 LHASDN-IEKVIAEFTRVSRKQ  140 (226)
T ss_pred             hhccCC-HHHHHHHHHHHhcCc
Confidence               122 2344554443 6763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.06  E-value=7.5e-10  Score=98.47  Aligned_cols=100  Identities=18%  Similarity=0.188  Sum_probs=72.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++...  ..++++++++|+.+....+  +.+.||+|+++.+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~--~~~~fD~I~~~~~  112 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNI--SDGSVDLIFSNWL  112 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCC--CCCCEEEEehhhh
Confidence            36799999999999999999888899999999999988765321  2356899999986432222  2257999999875


Q ss_pred             CCCc----cHHHHHHHHh-CCCCcEEEEe
Q 043853          147 RPGM----HMKLIKFLLK-LKAPRIVYVS  170 (222)
Q Consensus       147 ~~~~----~~~~~~~l~~-l~~~~~v~~~  170 (222)
                      ..-+    ...++..+.+ ++++|.+++.
T Consensus       113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        113 LMYLSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            2221    1344444443 7899988764

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=99.05  E-value=1.5e-08  Score=91.19  Aligned_cols=108  Identities=16%  Similarity=0.129  Sum_probs=73.6

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCC-CCCCCeEEEEecccchhHHHHhhcC----------CeEEEEeCCHHHHHHHHHH
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLR-DDGSEIVLDLFCGTGTIGLTLARWV----------KHVYGYEVVPQAISDACRN  108 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~-~~~~~~vlDlg~G~G~~~~~la~~~----------~~v~gvD~~~~~i~~a~~n  108 (222)
                      +.|| ++...++.+++++....... .....+|+|++||+|.+.+++++..          ..++|+|+++.+++.++.|
T Consensus         4 Gqfy-TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~   82 (524)
T TIGR02987         4 GTFF-TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL   82 (524)
T ss_pred             cccC-CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence            4455 45778888777765432210 0135689999999999999776532          3789999999999999999


Q ss_pred             HHHcCCCcEEEEeCchhchhhhcC-CCCCCCcEEEECCCCC
Q 043853          109 AKLNNISNATFVQGDLNKIGGDFG-NAFPKPDIVISDPNRP  148 (222)
Q Consensus       109 ~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~ii~~pp~~  148 (222)
                      +...+.-++.+.+.|......... ...+.||+|+.|||+.
T Consensus        83 l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~  123 (524)
T TIGR02987        83 LGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYG  123 (524)
T ss_pred             HhhcCCCCceeeecccccccccccccccCcccEEEeCCCcc
Confidence            987763235666666543321111 1124799999999954

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.05  E-value=4e-11  Score=83.80  Aligned_cols=94  Identities=18%  Similarity=0.130  Sum_probs=54.9

Q ss_pred             EEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC--
Q 043853           72 LDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR--  147 (222)
Q Consensus        72 lDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~--  147 (222)
                      ||+|||+|.++..+.+.  ..+++|+|+|+.|++.|++++......+......+..+......  .+.||+|++.-..  
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP--PESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC------SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc--ccccceehhhhhHhh
Confidence            79999999999988877  45999999999999999999988776544444444433322211  1489999887542  


Q ss_pred             CCccHHHHHHHHh-CCCCcEE
Q 043853          148 PGMHMKLIKFLLK-LKAPRIV  167 (222)
Q Consensus       148 ~~~~~~~~~~l~~-l~~~~~v  167 (222)
                      -.-...+++.+.. ++|+|++
T Consensus        79 l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   79 LEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhHHHHHHHHHHHcCCCCCC
Confidence            2223344444443 6888864

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.05  E-value=7.9e-09  Score=82.63  Aligned_cols=101  Identities=20%  Similarity=0.170  Sum_probs=79.8

Q ss_pred             CCCCCCeEEEEecccchhHHHHhhcC--------CeEEEEeCCHHHHHHHHHHHHHcCCC---cEEEEeCchhchhhhcC
Q 043853           64 RDDGSEIVLDLFCGTGTIGLTLARWV--------KHVYGYEVVPQAISDACRNAKLNNIS---NATFVQGDLNKIGGDFG  132 (222)
Q Consensus        64 ~~~~~~~vlDlg~G~G~~~~~la~~~--------~~v~gvD~~~~~i~~a~~n~~~~~~~---~v~~~~~d~~~~~~~~~  132 (222)
                      .+..+.++||++||||-++..+.+..        .+|+.+|+||+|+..+++..++.++.   .+.++.+|+++++.   
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF---  173 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF---  173 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC---
Confidence            34567999999999999999887642        48999999999999999999776653   38999999999986   


Q ss_pred             CCCCCCcEEEECCC---CCCccHHHHHHHHhCCCCcEEE
Q 043853          133 NAFPKPDIVISDPN---RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       133 ~~~~~fD~ii~~pp---~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                       +++.||...+.--   .......+.++.+.|+|||.++
T Consensus       174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~  211 (296)
T KOG1540|consen  174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFS  211 (296)
T ss_pred             -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence             3468998755432   2344567777788899999876

>TIGR00417 speE spermidine synthase

Probab=99.05  E-value=8.4e-09  Score=85.21  Aligned_cols=102  Identities=16%  Similarity=0.094  Sum_probs=76.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +.++||++|||+|.++..+++.  ..+++++|+|+.+++.|++++...+    .++++++.+|+.++....   .++||+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDv  148 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDV  148 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccE
Confidence            3569999999999999877665  3589999999999999999886532    235899999998876542   248999


Q ss_pred             EEECCCCCC------ccHHHHHHHH-hCCCCcEEEEee
Q 043853          141 VISDPNRPG------MHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~------~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      |++|++...      ...++.+.+. .|+++|++.+..
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            999986221      1234444443 489999987654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.05  E-value=2.6e-09  Score=87.87  Aligned_cols=132  Identities=14%  Similarity=0.191  Sum_probs=81.9

Q ss_pred             EEEcCCccccCCHHHHHHHHHHHHHH-hc-CCCCCCCeEEEEecccch----hHHHHhhc-------CCeEEEEeCCHHH
Q 043853           35 FQISANSFFQTNTHQAEVLYKLIEDC-AG-LRDDGSEIVLDLFCGTGT----IGLTLARW-------VKHVYGYEVVPQA  101 (222)
Q Consensus        35 ~~~~~~~f~~~~~~~~~~~~~~i~~~-~~-~~~~~~~~vlDlg~G~G~----~~~~la~~-------~~~v~gvD~~~~~  101 (222)
                      +.++.+.|+.... ..+.+.+.+... .. ....+..+|+|+|||+|-    +++.+++.       ..+|+|+|+|+.|
T Consensus        66 lti~~T~FfR~~~-~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~  144 (264)
T smart00138       66 MTTNETRFFRESK-HFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKA  144 (264)
T ss_pred             hhcCCCcccCCcH-HHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHH
Confidence            4556778887543 333344443322 21 112235799999999996    45555442       2389999999999


Q ss_pred             HHHHHHHHHH----cCC-----------------------CcEEEEeCchhchhhhcCCCCCCCcEEEECCC--C--CCc
Q 043853          102 ISDACRNAKL----NNI-----------------------SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN--R--PGM  150 (222)
Q Consensus       102 i~~a~~n~~~----~~~-----------------------~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--~--~~~  150 (222)
                      ++.|++.+..    .++                       .++++.+.|+.+.+..    .+.||+|++.--  +  ...
T Consensus       145 L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~----~~~fD~I~crnvl~yf~~~~  220 (264)
T smart00138      145 LEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPP----LGDFDLIFCRNVLIYFDEPT  220 (264)
T ss_pred             HHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCc----cCCCCEEEechhHHhCCHHH
Confidence            9999986410    111                       2488999999875431    257999998421  1  011


Q ss_pred             cHHHHHHHH-hCCCCcEEEEee
Q 043853          151 HMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       151 ~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ...+++.+. .++|+|.+++..
T Consensus       221 ~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      221 QRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             HHHHHHHHHHHhCCCeEEEEEC
Confidence            234444443 489999998754

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.04  E-value=1.7e-09  Score=83.49  Aligned_cols=122  Identities=20%  Similarity=0.171  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHh----cCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC--C-CcEEE
Q 043853           49 QAEVLYKLIEDCA----GLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN--I-SNATF  119 (222)
Q Consensus        49 ~~~~~~~~i~~~~----~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~--~-~~v~~  119 (222)
                      .+..+.+++....    ......+.+|||+|||+|..++.++..  ..+|+..|.++ .++.++.|++.|+  . .++.+
T Consensus        23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v  101 (173)
T PF10294_consen   23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV  101 (173)
T ss_dssp             HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE
T ss_pred             hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC
Confidence            3444455555532    112234789999999999999999887  66999999999 9999999999987  3 34888


Q ss_pred             EeCchhchh-hhcCCCCCCCcEEEECCC--CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          120 VQGDLNKIG-GDFGNAFPKPDIVISDPN--RPGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       120 ~~~d~~~~~-~~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      ...|+.+.. .... +...||+|+..--  .....+.+.+.+.. +++++.+|+++.
T Consensus       102 ~~L~Wg~~~~~~~~-~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  102 RPLDWGDELDSDLL-EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             EE--TTS-HHHHHH-S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             cEEEecCccccccc-ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            888876532 1211 1247999987542  23556777777766 566655776663

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.04  E-value=1.4e-09  Score=90.58  Aligned_cols=98  Identities=27%  Similarity=0.339  Sum_probs=75.6

Q ss_pred             CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.|||+|||+|.+++..|+.+ .+|+|+|.|..+ +.|++.+..|++++ ++++++.+++...+    .+++|+|++-.
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP----~eKVDiIvSEW  135 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP----VEKVDIIVSEW  135 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC----ccceeEEeehh
Confidence            7899999999999999888765 599999998554 99999999999988 99999999888432    25899999964


Q ss_pred             C-CCCccHHHHHHHH-----hCCCCcEEEEe
Q 043853          146 N-RPGMHMKLIKFLL-----KLKAPRIVYVS  170 (222)
Q Consensus       146 p-~~~~~~~~~~~l~-----~l~~~~~v~~~  170 (222)
                      = +.-+...+++.+.     .|+++|++|-+
T Consensus       136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  136 MGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             hhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            2 1112234444332     27899988733

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.02  E-value=7.9e-09  Score=86.86  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.+++.+++..+  +++++|. |.+++.+++++...++.+ ++++.+|+.+...      +.+|++++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~------~~~D~v~~  221 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY------PEADAVLF  221 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC------CCCCEEEe
Confidence            468999999999999999988764  8999997 899999999999998864 9999999976332      24688765


Q ss_pred             CCC-C--C-CccHHHHHHH-HhCCCCcEEEEee
Q 043853          144 DPN-R--P-GMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp-~--~-~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .-- .  . .....+++.+ +.++|+|.+++..
T Consensus       222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            431 1  1 1112345444 4489988886653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.00  E-value=1.5e-08  Score=89.41  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           65 DDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        65 ~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      +.++.+|||+|||.|+-+..+|...   ..++++|+++.-++.+++|++..|+.++.+.+.|...+...+.   ..||.|
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~---~~fD~I  187 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP---ETFDAI  187 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch---hhcCeE
Confidence            3468899999999999999888642   4899999999999999999999999999999999887644322   369999


Q ss_pred             EECCCCCC
Q 043853          142 ISDPNRPG  149 (222)
Q Consensus       142 i~~pp~~~  149 (222)
                      ++|+|.++
T Consensus       188 LvDaPCSG  195 (470)
T PRK11933        188 LLDAPCSG  195 (470)
T ss_pred             EEcCCCCC
Confidence            99999553

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.00  E-value=2.6e-08  Score=77.85  Aligned_cols=106  Identities=23%  Similarity=0.217  Sum_probs=67.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh--hc--CCCCCCCc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG--DF--GNAFPKPD  139 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~~fD  139 (222)
                      ++.+|||+|||+|.++..+++..   .+++++|+|+.+           +.++++++++|+.+...  .+  ..+.+.||
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD  100 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence            47899999999999999887643   379999999864           23457888888865321  00  01224799


Q ss_pred             EEEECCC--CCCc-----------cHHHHHHH-HhCCCCcEEEEeeC-ccchHhhHHHh
Q 043853          140 IVISDPN--RPGM-----------HMKLIKFL-LKLKAPRIVYVSCN-PATCARDLDYL  183 (222)
Q Consensus       140 ~ii~~pp--~~~~-----------~~~~~~~l-~~l~~~~~v~~~~~-~~~~~~~~~~l  183 (222)
                      +|+++++  ..+.           ...++..+ +.++|+|.+++... ......-+..+
T Consensus       101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l  159 (188)
T TIGR00438       101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNEL  159 (188)
T ss_pred             EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHH
Confidence            9999852  1111           12333333 34789999887553 33334444444

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.00  E-value=1.6e-08  Score=80.85  Aligned_cols=143  Identities=22%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH-c-----------CCCcEEEEeCchhchhhhcCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL-N-----------NISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~-~-----------~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      ++.+||.+|||.|.-...||..+.+|+|+|+|+.+++.+.+.... .           ...++++.++|++++.....  
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~--  114 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV--  114 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH--
T ss_pred             CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc--
Confidence            367999999999999999999888999999999999998433221 1           11247999999999765422  


Q ss_pred             CCCCcEEEEC-----CCCCCccHHHHHHHHh-CCCCcEEEEee----------Cc-cchHhhHHHhhccCCCCccCCCeE
Q 043853          135 FPKPDIVISD-----PNRPGMHMKLIKFLLK-LKAPRIVYVSC----------NP-ATCARDLDYLCHGVGDQNIKGCYK  197 (222)
Q Consensus       135 ~~~fD~ii~~-----pp~~~~~~~~~~~l~~-l~~~~~v~~~~----------~~-~~~~~~~~~l~~~~~~~~~~~~~~  197 (222)
                       ++||+|+=-     .| ...-.+..+.+.. ++|++.+++-+          .| .....++..+.        ..+|+
T Consensus       115 -g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~--------~~~f~  184 (218)
T PF05724_consen  115 -GKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELF--------GPGFE  184 (218)
T ss_dssp             -HSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHH--------TTTEE
T ss_pred             -CCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHh--------cCCcE
Confidence             379998432     12 1334555666655 57877733222          12 12223455553        68899


Q ss_pred             EeEeeeeccCCC---------CCceeEEEEEEe
Q 043853          198 LKSLQPVDMFPH---------TPHIECVCLLEL  221 (222)
Q Consensus       198 ~~~~~~~~~~p~---------~~~~~~v~~~~~  221 (222)
                      +..+...+..+.         ..-.+.+.+|+|
T Consensus       185 i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  217 (218)
T PF05724_consen  185 IEELEEEDSIEEEPRFKSWGLSRFREKVYVLRR  217 (218)
T ss_dssp             EEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEEE
T ss_pred             EEEEecccccccccchhhcCcCceeEEEEEEEc
Confidence            999888776665         445677888776

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.99  E-value=1.8e-08  Score=80.11  Aligned_cols=104  Identities=18%  Similarity=0.154  Sum_probs=68.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++..   ..|+|+|+++.           +..++++++++|+.+..      ..+  ....
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~--~~~~  117 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERV--GDSK  117 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHh--CCCC
Confidence            46799999999999999887753   48999999981           23456899999998753      111  1257


Q ss_pred             CcEEEECC-C-CCCc-----------cHHHHHHH-HhCCCCcEEEEeeC-ccchHhhHHHh
Q 043853          138 PDIVISDP-N-RPGM-----------HMKLIKFL-LKLKAPRIVYVSCN-PATCARDLDYL  183 (222)
Q Consensus       138 fD~ii~~p-p-~~~~-----------~~~~~~~l-~~l~~~~~v~~~~~-~~~~~~~~~~l  183 (222)
                      ||+|++++ | ..+.           ...+++.+ +.++|+|.+++... ...+..-+..+
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l  178 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREI  178 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHH
Confidence            99999986 3 1111           01233333 33899999887553 33333334443

>PRK10742 putative methyltransferase; Provisional

Probab=98.98  E-value=1.6e-08  Score=81.37  Aligned_cols=91  Identities=20%  Similarity=0.190  Sum_probs=73.3

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc------CC---CcEEEEeCchh
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN------NI---SNATFVQGDLN  125 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~------~~---~~v~~~~~d~~  125 (222)
                      +.+...+++++....+|||+++|+|..++.++..+.+|+++|.||.+....+++++..      +.   .+++++++|..
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~  155 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence            4455555555533349999999999999999888888999999999999999999874      22   45999999999


Q ss_pred             chhhhcCCCCCCCcEEEECCCCC
Q 043853          126 KIGGDFGNAFPKPDIVISDPNRP  148 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp~~  148 (222)
                      ++.....   ..||+|++|||+.
T Consensus       156 ~~L~~~~---~~fDVVYlDPMfp  175 (250)
T PRK10742        156 TALTDIT---PRPQVVYLDPMFP  175 (250)
T ss_pred             HHHhhCC---CCCcEEEECCCCC
Confidence            9987643   3699999999843

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.98  E-value=1.5e-08  Score=80.67  Aligned_cols=98  Identities=21%  Similarity=0.231  Sum_probs=72.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.++..+++..+   +++++|+++.+++.++++..  ...++++..+|+.+.+..    .+.||+|++
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~----~~~~D~i~~  112 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE----DNSFDAVTI  112 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC----CCcEEEEEE
Confidence            478999999999999998887644   89999999999999999876  233589999999876532    247999987


Q ss_pred             CCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          144 DPN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +-.   ... ...+++.+ ..++++|.+++..
T Consensus       113 ~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       113 AFGLRNVTD-IQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             eeeeCCccc-HHHHHHHHHHHcCCCcEEEEEE
Confidence            532   122 23444444 4478999887543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.97  E-value=6.5e-09  Score=86.05  Aligned_cols=120  Identities=16%  Similarity=0.117  Sum_probs=67.8

Q ss_pred             eeeecCeeE-EEcCCccccCCHHHHHHHHHHHHHHhcCCCC---CCCeEEEEecccchhHHHH-h-hcCCeEEEEeCCHH
Q 043853           27 TETLRGLTF-QISANSFFQTNTHQAEVLYKLIEDCAGLRDD---GSEIVLDLFCGTGTIGLTL-A-RWVKHVYGYEVVPQ  100 (222)
Q Consensus        27 ~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~---~~~~vlDlg~G~G~~~~~l-a-~~~~~v~gvD~~~~  100 (222)
                      -...+|+.+ .++++...| ..+....++.|+.+++.....   ...++||||||...+--.| + ..+.+++|+|+++.
T Consensus        59 Lk~dfgl~~wdiP~~~LcP-~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~  137 (299)
T PF05971_consen   59 LKHDFGLDVWDIPEGRLCP-PIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPK  137 (299)
T ss_dssp             HHHHH--------TTS-----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HH
T ss_pred             HHHhcCCccccCCCCCcCC-CCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHH
Confidence            334478876 777776665 478888889999998864332   2468999999988664333 2 34679999999999


Q ss_pred             HHHHHHHHHHHc-CCCc-EEEEeCchh-chhhhcCCCCCCCcEEEECCCC
Q 043853          101 AISDACRNAKLN-NISN-ATFVQGDLN-KIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus       101 ~i~~a~~n~~~~-~~~~-v~~~~~d~~-~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      .++.|++|++.| ++++ ++++...-. .+........+.||+.+||||.
T Consensus       138 sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPF  187 (299)
T PF05971_consen  138 SLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPF  187 (299)
T ss_dssp             HHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE----
T ss_pred             HHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCcc
Confidence            999999999999 8875 888766432 2233333344589999999993

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.96  E-value=7.1e-09  Score=83.55  Aligned_cols=108  Identities=21%  Similarity=0.255  Sum_probs=82.4

Q ss_pred             CeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH
Q 043853           32 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL  111 (222)
Q Consensus        32 ~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~  111 (222)
                      +..|+-+.+..+..|+.    ..+.|.+-..+++  .+.|||+|.|||.++..+.+.+.+|+|+|+||.|+....+..+.
T Consensus        29 ~~kfnkd~GQHilkNp~----v~~~I~~ka~~k~--tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~g  102 (315)
T KOG0820|consen   29 GSKFNKDFGQHILKNPL----VIDQIVEKADLKP--TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQG  102 (315)
T ss_pred             CcccccccchhhhcCHH----HHHHHHhccCCCC--CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcC
Confidence            45555555655555533    3344444444444  78999999999999999999999999999999999999998876


Q ss_pred             cCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc
Q 043853          112 NNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH  151 (222)
Q Consensus       112 ~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~  151 (222)
                      ...++ .+++.+|......      ..||.+++|.|+.-..
T Consensus       103 tp~~~kLqV~~gD~lK~d~------P~fd~cVsNlPyqISS  137 (315)
T KOG0820|consen  103 TPKSGKLQVLHGDFLKTDL------PRFDGCVSNLPYQISS  137 (315)
T ss_pred             CCccceeeEEecccccCCC------cccceeeccCCccccC
Confidence            55445 9999999987653      3799999998865433

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=1.4e-08  Score=80.19  Aligned_cols=104  Identities=18%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC--CCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA--FPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~--~~~fD~i  141 (222)
                      .+++||+|.-||+-+++.|..   ..+++++|+++...+.+.+..+..|+.. ++++++++.+...++..+  .+.||++
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence            689999999999999888765   4599999999999999999999999976 999999998887665443  4689999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      |.|.-+..+.....+.+..+++||++.+.-
T Consensus       154 FvDadK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  154 FVDADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             EEccchHHHHHHHHHHHhhcccccEEEEec
Confidence            999877666656666666789999887543

>TIGR03438 probable methyltransferase

Probab=98.94  E-value=3.5e-08  Score=82.81  Aligned_cols=106  Identities=6%  Similarity=-0.028  Sum_probs=69.2

Q ss_pred             CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCC-CCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNA-FPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~fD~i  141 (222)
                      ++.+|||+|||+|..+..+++.   ..+++++|+|+.|++.|++++..... -++.++++|..+........ .....++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            4678999999999999988775   36899999999999999998865321 13788999987643211110 0123344


Q ss_pred             EECCCCCCc----cHHHHHHHH-hCCCCcEEEEeeC
Q 043853          142 ISDPNRPGM----HMKLIKFLL-KLKAPRIVYVSCN  172 (222)
Q Consensus       142 i~~pp~~~~----~~~~~~~l~-~l~~~~~v~~~~~  172 (222)
                      +++.+-..+    ...+++.+. .++|+|.+.+..+
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            444331111    123444443 3789998887654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.94  E-value=2e-08  Score=89.86  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=92.9

Q ss_pred             CCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           65 DDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        65 ~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      +.++..+||||||.|.+++.+|...+  .++|+|++...+..+.+.+...+++|+.++.+|+..+...+.  .+.+|-|+
T Consensus       345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~--~~sv~~i~  422 (506)
T PRK01544        345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP--NNSLDGIY  422 (506)
T ss_pred             CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC--cccccEEE
Confidence            34578999999999999999998766  899999999999999999988999999999999865544332  24688887


Q ss_pred             ECCC----------CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHH
Q 043853          143 SDPN----------RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLD  181 (222)
Q Consensus       143 ~~pp----------~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~  181 (222)
                      ++.|          ++-..+.+++.+.. ++++|.+++.++.........
T Consensus       423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~  472 (506)
T PRK01544        423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI  472 (506)
T ss_pred             EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            7654          34466788887765 899999999999877777643

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.91  E-value=1.1e-08  Score=77.26  Aligned_cols=104  Identities=25%  Similarity=0.225  Sum_probs=69.0

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      +.+..+.... .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.          .++.....+..+...    +
T Consensus        11 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~----~   75 (161)
T PF13489_consen   11 DLLERLLPRL-KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF----P   75 (161)
T ss_dssp             HHHHHHHTCT-TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHC----H
T ss_pred             HHHHHHhccc-CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc----c
Confidence            3444444321 347899999999999999998887899999999999988          122333332222221    1


Q ss_pred             CCCCcEEEECCC--CCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          135 FPKPDIVISDPN--RPGMHMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       135 ~~~fD~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                      .+.||+|++.--  .-.-...+++.+.+ ++|+|.++++...
T Consensus        76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            248999999753  11123556666655 7899998877743

...

>PRK06202 hypothetical protein; Provisional

Probab=98.89  E-value=9.9e-09  Score=82.83  Aligned_cols=95  Identities=23%  Similarity=0.292  Sum_probs=63.5

Q ss_pred             CCCeEEEEecccchhHHHHhhc----C--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW----V--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~----~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ++.+|||+|||+|.++..+++.    +  .+++|+|+|+.|++.|+++....+   +++...+...+..    ..+.||+
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~l~~----~~~~fD~  132 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDELVA----EGERFDV  132 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEecccccc----cCCCccE
Confidence            4679999999999999887742    2  389999999999999998865433   4555555544432    1257999


Q ss_pred             EEECCCCCCc----cHHHHHHHHhCCCCcEEE
Q 043853          141 VISDPNRPGM----HMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       141 ii~~pp~~~~----~~~~~~~l~~l~~~~~v~  168 (222)
                      |+++..-.-+    ...++..+.++..+.+++
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i  164 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLADSAALARRLVLH  164 (232)
T ss_pred             EEECCeeecCChHHHHHHHHHHHHhcCeeEEE
Confidence            9998641111    124555555444444444

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.89  E-value=4.6e-09  Score=82.88  Aligned_cols=106  Identities=23%  Similarity=0.223  Sum_probs=81.8

Q ss_pred             CCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcE
Q 043853           64 RDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        64 ~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      .+..+.+|||.+.|-|+.++..++.+. .|+.+|.||..++.|+-|--..++.  +++++.||+.+...++.  ++.||+
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~--D~sfDa  208 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD--DESFDA  208 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC--ccccce
Confidence            344689999999999999998777666 9999999999999998876444443  47999999999987764  357999


Q ss_pred             EEECCCCCCcc-----HHHHHHHH-hCCCCcEEEEee
Q 043853          141 VISDPNRPGMH-----MKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~~~-----~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      |+.||||-...     .++-+.+. -|+++|.++...
T Consensus       209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv  245 (287)
T COG2521         209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV  245 (287)
T ss_pred             EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence            99999964432     34444443 378888886554

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=8.2e-08  Score=77.48  Aligned_cols=126  Identities=23%  Similarity=0.233  Sum_probs=94.0

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGG  129 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~  129 (222)
                      +.+|..++.+.+  +.+|+|-|+|+|+++.++++..   .+++.+|.+....+.|++-++..++.+ +++.+-|+....+
T Consensus        94 ia~I~~~L~i~P--GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen   94 IAMILSMLEIRP--GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF  171 (314)
T ss_pred             HHHHHHHhcCCC--CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence            566777776665  9999999999999999999864   499999999999999999999999864 9999999876544


Q ss_pred             hcCCCCCCCcEEEECCCCCCcc-HHHHHHHHhCCCCcEEEEeeCccchHhhHHHhh
Q 043853          130 DFGNAFPKPDIVISDPNRPGMH-MKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC  184 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~-~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~  184 (222)
                      ...  ...+|.|++|.|.+... +.+.+ +.....++++-++-+-+...+.++.++
T Consensus       172 ~~k--s~~aDaVFLDlPaPw~AiPha~~-~lk~~g~r~csFSPCIEQvqrtce~l~  224 (314)
T KOG2915|consen  172 LIK--SLKADAVFLDLPAPWEAIPHAAK-ILKDEGGRLCSFSPCIEQVQRTCEALR  224 (314)
T ss_pred             ccc--ccccceEEEcCCChhhhhhhhHH-HhhhcCceEEeccHHHHHHHHHHHHHH
Confidence            321  25799999999855332 33333 333334455555555666667777775

>PLN02823 spermine synthase

Probab=98.85  E-value=9.4e-08  Score=81.04  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +.++||.+|+|.|..+..+.+.  ..+++.+|+|+.+++.|++.+..++    .++++++.+|+..+....   .++||+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---~~~yDv  179 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---DEKFDV  179 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---CCCccE
Confidence            4578999999999999877664  3589999999999999999986542    346999999999987542   358999


Q ss_pred             EEECCCCC---C-----ccHHHHH-HH-HhCCCCcEEEEeeC
Q 043853          141 VISDPNRP---G-----MHMKLIK-FL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       141 ii~~pp~~---~-----~~~~~~~-~l-~~l~~~~~v~~~~~  172 (222)
                      |++|.+..   +     ...++.+ .+ +.|+++|++.+...
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~  221 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG  221 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence            99996421   1     2345555 44 44899998876543

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.85  E-value=3.6e-08  Score=86.67  Aligned_cols=96  Identities=22%  Similarity=0.319  Sum_probs=70.7

Q ss_pred             CCeEEEEecccchhHHHHhhcC------CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcE
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV------KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~------~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +..|+|+|||+|.++...++.+      .+|+|||.|+.++..+++.++.++..+ |+++++|+.++...     .++|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-----ekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-----EKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-----S-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-----CceeE
Confidence            5789999999999987655432      499999999999999988888888854 99999999998654     48999


Q ss_pred             EEECCC----CCCccHHHHHHHHh-CCCCcEEE
Q 043853          141 VISDPN----RPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       141 ii~~pp----~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      ||+-.=    ..++.++.++...+ ++|+|+++
T Consensus       262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            998652    34456666666654 67777765

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.84  E-value=2.3e-08  Score=83.12  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=63.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++..++|.+||.|+.+..+++..   .+|+|+|.||.+++.|++++..  .++++++++|..++...+......+|.|++
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~   96 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL   96 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence            46799999999999999998764   5899999999999999998765  446999999999886554321137999998


Q ss_pred             CC
Q 043853          144 DP  145 (222)
Q Consensus       144 ~p  145 (222)
                      |.
T Consensus        97 DL   98 (296)
T PRK00050         97 DL   98 (296)
T ss_pred             CC
Confidence            86

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=7.5e-08  Score=82.44  Aligned_cols=84  Identities=23%  Similarity=0.226  Sum_probs=69.3

Q ss_pred             CCCCCCeEEEEecccchhHHHHhhcCC----eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           64 RDDGSEIVLDLFCGTGTIGLTLARWVK----HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        64 ~~~~~~~vlDlg~G~G~~~~~la~~~~----~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      .+.++.+|||++++.|+=+..+|+...    .|+++|.|+.-++..++|++..|+.++.+.+.|...+...... ..+||
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~-~~~fD  231 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG-GEKFD  231 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc-cCcCc
Confidence            345689999999999999998887543    4799999999999999999999999999999998766543321 12699


Q ss_pred             EEEECCCCC
Q 043853          140 IVISDPNRP  148 (222)
Q Consensus       140 ~ii~~pp~~  148 (222)
                      .|++|+|.+
T Consensus       232 ~iLlDaPCS  240 (355)
T COG0144         232 RILLDAPCS  240 (355)
T ss_pred             EEEECCCCC
Confidence            999999943

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.81  E-value=4.4e-08  Score=81.25  Aligned_cols=98  Identities=24%  Similarity=0.340  Sum_probs=76.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .++.|||+|||+|.++...|+. ..+|+++|-| +|.++|++.++.|.+.+ +.++.|.+++...+     ++.|++|+.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-----Ek~DviISE  250 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-----EKVDVIISE  250 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-----hhccEEEec
Confidence            3689999999999999988875 4599999986 89999999999988754 99999999887543     589999998


Q ss_pred             CC-CCCccHHHHHHH----HhCCCCcEEEEe
Q 043853          145 PN-RPGMHMKLIKFL----LKLKAPRIVYVS  170 (222)
Q Consensus       145 pp-~~~~~~~~~~~l----~~l~~~~~v~~~  170 (222)
                      |- .--..+++++..    +.++|.|..|-+
T Consensus       251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  251 PMGYMLVNERMLESYLHARKWLKPNGKMFPT  281 (517)
T ss_pred             cchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence            74 112234555543    237888877633

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.81  E-value=2.4e-08  Score=85.85  Aligned_cols=129  Identities=22%  Similarity=0.257  Sum_probs=88.7

Q ss_pred             cCCccccCCHHHHHHHHHHH---HHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHH
Q 043853           38 SANSFFQTNTHQAEVLYKLI---EDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKL  111 (222)
Q Consensus        38 ~~~~f~~~~~~~~~~~~~~i---~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~  111 (222)
                      ...+||.+.......+.-.+   ...........-++||.-+|+|.-++..+..   ..+|+..|+|+.+++..++|++.
T Consensus        17 ~~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~   96 (377)
T PF02005_consen   17 KAPVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL   96 (377)
T ss_dssp             TSSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh
Confidence            35789987777776665444   2322211112458999999999999988875   34999999999999999999999


Q ss_pred             cCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHH-HHhCCCCcEEEEee
Q 043853          112 NNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       112 ~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      |+++.  +++.+.|+..++..   ....||+|=+||-  |....+++. +..++.+|++++++
T Consensus        97 N~~~~~~~~v~~~DAn~ll~~---~~~~fD~IDlDPf--GSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen   97 NGLEDERIEVSNMDANVLLYS---RQERFDVIDLDPF--GSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             CT-SGCCEEEEES-HHHHHCH---STT-EEEEEE--S--S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCceEEEehhhHHHHhhh---ccccCCEEEeCCC--CCccHhHHHHHHHhhcCCEEEEec
Confidence            99975  89999999888742   1258999999985  444566664 46688999999887

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.81  E-value=5.3e-08  Score=76.45  Aligned_cols=71  Identities=27%  Similarity=0.305  Sum_probs=54.5

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++. ...++|+|+++.+++.++++       +++++++|+.+.....  ..+.||+|+++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~--~~~sfD~Vi~~~   83 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAF--PDKSFDYVILSQ   83 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhccccc--CCCCcCEEEEhh
Confidence            3679999999999999988754 45789999999999988642       4678888886532111  224799999987


Q ss_pred             C
Q 043853          146 N  146 (222)
Q Consensus       146 p  146 (222)
                      +
T Consensus        84 ~   84 (194)
T TIGR02081        84 T   84 (194)
T ss_pred             H
Confidence            5

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=9.8e-08  Score=74.31  Aligned_cols=151  Identities=20%  Similarity=0.234  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcC--------C-
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNN--------I-  114 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~--------~-  114 (222)
                      .+-...++.+...+    .++-++||+|+|||+++..+++.    +...+|||.-|+.++.+++|+...-        + 
T Consensus        67 ~mha~~le~L~~~L----~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~  142 (237)
T KOG1661|consen   67 HMHATALEYLDDHL----QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK  142 (237)
T ss_pred             HHHHHHHHHHHHhh----ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc
Confidence            34444555555544    35889999999999999988853    2255999999999999999997653        1 


Q ss_pred             -CcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccC
Q 043853          115 -SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIK  193 (222)
Q Consensus       115 -~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~  193 (222)
                       .++.++.+|.......    ..+||.|.+....+.+..++++.   |+++|.+.+-..+....+.+...-     |+-.
T Consensus       143 ~~~l~ivvGDgr~g~~e----~a~YDaIhvGAaa~~~pq~l~dq---L~~gGrllip~~~~~~~q~~~~~d-----k~~~  210 (237)
T KOG1661|consen  143 RGELSIVVGDGRKGYAE----QAPYDAIHVGAAASELPQELLDQ---LKPGGRLLIPVGQDGGTQYLRQID-----KNED  210 (237)
T ss_pred             cCceEEEeCCccccCCc----cCCcceEEEccCccccHHHHHHh---hccCCeEEEeecccCceeEEEeec-----cccc
Confidence             2478899999776543    35899999986545554444444   477777766665544444443331     1223


Q ss_pred             CCeEEeEeeeeccCCCCCcee
Q 043853          194 GCYKLKSLQPVDMFPHTPHIE  214 (222)
Q Consensus       194 ~~~~~~~~~~~~~~p~~~~~~  214 (222)
                      +..++...-.+...|.++..+
T Consensus       211 gki~~~~~f~v~yvPlt~~~~  231 (237)
T KOG1661|consen  211 GKIKLRTLFSVRYVPLTSRES  231 (237)
T ss_pred             CceeeeEeeceEEEecccccc
Confidence            334444444445567666544

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.77  E-value=1.8e-07  Score=77.18  Aligned_cols=100  Identities=15%  Similarity=0.087  Sum_probs=68.3

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      -.+++|||||||.|+.+..++..++ .|+|+|-++...-+.+-.-+..|.+. +...-.-+.+++.     .+.||+||+
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-----~~~FDtVF~  188 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-----LGAFDTVFS  188 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-----cCCcCEEEE
Confidence            3589999999999999998887655 79999999888777655444444433 3333344444443     247999998


Q ss_pred             CCC---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          144 DPN---RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp---~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ---   +... -..+..++. ++++|.+++.+
T Consensus       189 MGVLYHrr~P-l~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  189 MGVLYHRRSP-LDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             eeehhccCCH-HHHHHHHHHhhCCCCEEEEEE
Confidence            652   3333 344455544 78888888776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.77  E-value=1.6e-08  Score=77.31  Aligned_cols=72  Identities=24%  Similarity=0.244  Sum_probs=64.7

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ...+.|+|+|+|.++...|+...+|+++|.+|....+|.+|+..+|..|++++.+|+.++..      +..|+|+|-.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f------e~ADvvicEm  104 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF------ENADVVICEM  104 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc------cccceeHHHH
Confidence            47899999999999999998888999999999999999999998899899999999998865      2678887753

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.77  E-value=3.6e-08  Score=77.26  Aligned_cols=84  Identities=20%  Similarity=0.202  Sum_probs=61.9

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+...+++.++.+...-|||||||+|.-+..+...+-..+|+|+||.|++.|.+.  .  ++ -.++.+|.-+....   
T Consensus        37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~--e--~e-gdlil~DMG~Glpf---  108 (270)
T KOG1541|consen   37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER--E--LE-GDLILCDMGEGLPF---  108 (270)
T ss_pred             HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh--h--hh-cCeeeeecCCCCCC---
Confidence            3335555555555567899999999999998887778999999999999999872  2  11 36788887655433   


Q ss_pred             CCCCCcEEEECC
Q 043853          134 AFPKPDIVISDP  145 (222)
Q Consensus       134 ~~~~fD~ii~~p  145 (222)
                      ..+.||-+|+-.
T Consensus       109 rpGtFDg~ISIS  120 (270)
T KOG1541|consen  109 RPGTFDGVISIS  120 (270)
T ss_pred             CCCccceEEEee
Confidence            235899887643

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.76  E-value=1.4e-07  Score=75.48  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=68.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH------------HcCCCcEEEEeCchhchhhhcCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK------------LNNISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~------------~~~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      ++.+||.+|||.|..+..||..+.+|+|+|+|+.+++.+.+...            ...-.++++.++|+.++.... ..
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-~~  121 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-NN  121 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-cc
Confidence            35799999999999999999999999999999999999866210            011125899999999875311 12


Q ss_pred             CCCCcEEEE------CCCCCCccHHHHHHHHh-CCCCcEEE
Q 043853          135 FPKPDIVIS------DPNRPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       135 ~~~fD~ii~------~pp~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      .+.||.|+=      -||  .+-.+..+.+.. ++|++.++
T Consensus       122 ~~~fD~VyDra~~~Alpp--~~R~~Y~~~l~~lL~pgg~ll  160 (226)
T PRK13256        122 LPVFDIWYDRGAYIALPN--DLRTNYAKMMLEVCSNNTQIL  160 (226)
T ss_pred             cCCcCeeeeehhHhcCCH--HHHHHHHHHHHHHhCCCcEEE
Confidence            247898632      233  223444445544 67876654

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.73  E-value=2.3e-07  Score=72.12  Aligned_cols=103  Identities=17%  Similarity=0.039  Sum_probs=75.9

Q ss_pred             CCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEE-EEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ...+||+|||+|..-...-. .+..|+++|-++.|-+.|.+.++++...+++ ++.++.++++.-   .+..+|.|++..
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l---~d~s~DtVV~Tl  153 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL---ADGSYDTVVCTL  153 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc---ccCCeeeEEEEE
Confidence            44689999999997765542 3669999999999999999999988766766 999999888632   235899987654


Q ss_pred             C--CCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          146 N--RPGMHMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       146 p--~~~~~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                      -  ...-..+.+..+++ |+|+|.+++-.+.
T Consensus       154 vLCSve~~~k~L~e~~rlLRpgG~iifiEHv  184 (252)
T KOG4300|consen  154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHV  184 (252)
T ss_pred             EEeccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence            2  11223455555554 7899988866654

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=98.69  E-value=3.8e-08  Score=83.76  Aligned_cols=121  Identities=18%  Similarity=0.194  Sum_probs=95.7

Q ss_pred             ccccCCCCCccccCceEEEeCCC--ceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccc
Q 043853            2 NNVNTSVGNTSVGEEEYTLYGKS--NITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG   79 (222)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G   79 (222)
                      .++....+|.+...+.+.+.|+.  ..++++++.+|.++.+.-|.. .++..+- +.+...   . .+++.|.|++||.|
T Consensus       188 v~K~~~Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWn-sRL~~Eh-erlsg~---f-k~gevv~D~FaGvG  261 (495)
T KOG2078|consen  188 VNKIGRITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWN-SRLSHEH-ERLSGL---F-KPGEVVCDVFAGVG  261 (495)
T ss_pred             eecccchhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEee-ccchhHH-HHHhhc---c-CCcchhhhhhcCcC
Confidence            34455678888999999999998  566777899999997655543 2222221 112222   2 35789999999999


Q ss_pred             hhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchh
Q 043853           80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIG  128 (222)
Q Consensus        80 ~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~  128 (222)
                      -+++.+++.++.|++.|.+|+++++.+.|++.|.+.  +++++..|+.++.
T Consensus       262 Pfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  262 PFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             ccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            999999998899999999999999999999999885  3999999998887

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.69  E-value=4.3e-08  Score=77.84  Aligned_cols=138  Identities=19%  Similarity=0.207  Sum_probs=86.4

Q ss_pred             eecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC----eEEEEeCCHHHHHH
Q 043853           29 TLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK----HVYGYEVVPQAISD  104 (222)
Q Consensus        29 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~----~v~gvD~~~~~i~~  104 (222)
                      ++++..|..+.+.|+....++..+    .-++......+..+|||+|||.|.....+.+..+    .++++|.||.+++.
T Consensus        37 k~wD~fy~~~~~rFfkdR~wL~~E----fpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~  112 (264)
T KOG2361|consen   37 KYWDTFYKIHENRFFKDRNWLLRE----FPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL  112 (264)
T ss_pred             hhhhhhhhhccccccchhHHHHHh----hHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence            446677777788888765555444    2233332222233799999999999998876533    79999999999999


Q ss_pred             HHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC----CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          105 ACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       105 a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .+++..... +++.....|+..-...-.-..+.+|++.+..-    .++-...+++.+.. ++|||.+++-.
T Consensus       113 vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  113 VKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             HHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence            999876543 34666666664432111112246887643221    11223455555544 78999988653

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.68  E-value=2.1e-07  Score=73.98  Aligned_cols=46  Identities=22%  Similarity=0.447  Sum_probs=41.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN  112 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~  112 (222)
                      .+..+||+||.+|.+++.+|+.  ...++|+|||+..|+.|+++++..
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            4678999999999999999985  348999999999999999998653

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.66  E-value=2e-07  Score=76.72  Aligned_cols=105  Identities=19%  Similarity=0.188  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh
Q 043853           50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG  129 (222)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~  129 (222)
                      .+.+++.+.+.+...  ++..|||+|+|.|.++..+++.+.+++++|+++.+++..++...  ..++++++.+|+.++..
T Consensus        15 ~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~   90 (262)
T PF00398_consen   15 DPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDL   90 (262)
T ss_dssp             HHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCG
T ss_pred             CHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhcccc
Confidence            444555566666544  47899999999999999999988999999999999999998765  34579999999988765


Q ss_pred             hcCCCCCCCcEEEECCCCCCccHHHHHHHHh
Q 043853          130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLK  160 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~  160 (222)
                      ...- ......|++|.|+ .....++..+..
T Consensus        91 ~~~~-~~~~~~vv~NlPy-~is~~il~~ll~  119 (262)
T PF00398_consen   91 YDLL-KNQPLLVVGNLPY-NISSPILRKLLE  119 (262)
T ss_dssp             GGHC-SSSEEEEEEEETG-TGHHHHHHHHHH
T ss_pred             HHhh-cCCceEEEEEecc-cchHHHHHHHhh
Confidence            4210 1245689999997 555666666554

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.65  E-value=6.8e-07  Score=67.28  Aligned_cols=123  Identities=18%  Similarity=0.189  Sum_probs=81.7

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN  116 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~  116 (222)
                      ++-.+++...++.+..    .+  .+..+.-|||+|.|+|.++-++..++   ..++++|.|++.+...++..     +.
T Consensus        27 GaI~PsSs~lA~~M~s----~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~   95 (194)
T COG3963          27 GAILPSSSILARKMAS----VI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG   95 (194)
T ss_pred             eeecCCcHHHHHHHHh----cc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC
Confidence            3445555555555433    22  23347789999999999999776543   28999999999999887764     46


Q ss_pred             EEEEeCchhchhhhcCC-CCCCCcEEEECCCCCCccH----HHHHH-HHhCCCCcEEE-EeeCc
Q 043853          117 ATFVQGDLNKIGGDFGN-AFPKPDIVISDPNRPGMHM----KLIKF-LLKLKAPRIVY-VSCNP  173 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~-~~~~fD~ii~~pp~~~~~~----~~~~~-l~~l~~~~~v~-~~~~~  173 (222)
                      +++++||+.+....+.. .+..||.|++..|...+..    .+++. +.++..+|.++ ++..+
T Consensus        96 ~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963          96 VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            88999999887644432 3357999999987433322    33333 33467777665 34343

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=98.63  E-value=8.8e-08  Score=78.24  Aligned_cols=144  Identities=22%  Similarity=0.253  Sum_probs=99.5

Q ss_pred             CceEEEeCCC-ceeeeecCeeEEEcC--CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH-HHhh-cC
Q 043853           15 EEEYTLYGKS-NITETLRGLTFQISA--NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL-TLAR-WV   89 (222)
Q Consensus        15 ~~~~~~~g~~-~~~~~~~~~~~~~~~--~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~-~la~-~~   89 (222)
                      ...+.++|+. ++....+|+.|.+++  ..|...|.....++..+.        -.+..|+|+++|.|++++ .+.. ++
T Consensus       147 ~~v~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~s--------c~~eviVDLYAGIGYFTlpflV~agA  218 (351)
T KOG1227|consen  147 PNVQPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTS--------CDGEVIVDLYAGIGYFTLPFLVTAGA  218 (351)
T ss_pred             CccccccccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhcc--------cccchhhhhhcccceEEeehhhccCc
Confidence            4567888987 555556799999997  588888887777755443        135899999999999999 5554 45


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC-CCC-CccHHHHHHHHhCCCCcE
Q 043853           90 KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP-NRP-GMHMKLIKFLLKLKAPRI  166 (222)
Q Consensus        90 ~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p-p~~-~~~~~~~~~l~~l~~~~~  166 (222)
                      ..|+++|.+|.+++..+++++.|++.. ..++.+|-......     ...|-|.+.. |.. .-..-....|+ ...+++
T Consensus       219 k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-----~~AdrVnLGLlPSse~~W~~A~k~Lk-~eggsi  292 (351)
T KOG1227|consen  219 KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-----LRADRVNLGLLPSSEQGWPTAIKALK-PEGGSI  292 (351)
T ss_pred             cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-----ccchheeeccccccccchHHHHHHhh-hcCCcE
Confidence            699999999999999999999998754 67777776554332     3567676653 432 22233333332 233346


Q ss_pred             EEEeeC
Q 043853          167 VYVSCN  172 (222)
Q Consensus       167 v~~~~~  172 (222)
                      +-+..+
T Consensus       293 lHIHen  298 (351)
T KOG1227|consen  293 LHIHEN  298 (351)
T ss_pred             EEEecc
Confidence            665554

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.61  E-value=1.7e-06  Score=68.50  Aligned_cols=116  Identities=18%  Similarity=0.198  Sum_probs=76.6

Q ss_pred             EEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           71 VLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        71 vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      |.|+||-.|++++.|.+.+.  +++++|+++..++.|+++++..++.+ +++..+|..+....    .+..|.|++    
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~----~e~~d~ivI----   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP----GEDVDTIVI----   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G----GG---EEEE----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC----CCCCCEEEE----
Confidence            68999999999999988754  89999999999999999999999876 99999998776543    123687776    


Q ss_pred             CCccHHHHHHHHh-----CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeee
Q 043853          148 PGMHMKLIKFLLK-----LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       148 ~~~~~~~~~~l~~-----l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  203 (222)
                      .|+....+..+..     +.....+++.  |.+-...++..+.       ++||.+..-..
T Consensus        73 AGMGG~lI~~ILe~~~~~~~~~~~lILq--P~~~~~~LR~~L~-------~~gf~I~~E~l  124 (205)
T PF04816_consen   73 AGMGGELIIEILEAGPEKLSSAKRLILQ--PNTHAYELRRWLY-------ENGFEIIDEDL  124 (205)
T ss_dssp             EEE-HHHHHHHHHHTGGGGTT--EEEEE--ESS-HHHHHHHHH-------HTTEEEEEEEE
T ss_pred             ecCCHHHHHHHHHhhHHHhccCCeEEEe--CCCChHHHHHHHH-------HCCCEEEEeEE
Confidence            3666665555443     2222334444  4445555554443       78898877443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.59  E-value=4.3e-08  Score=77.34  Aligned_cols=97  Identities=19%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC--
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP--  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p--  145 (222)
                      =+++||+|||||..+..+......++|+|+|..|++.|.++=    + -=++.++|+..+.....  ..+||+|.+.-  
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg----~-YD~L~~Aea~~Fl~~~~--~er~DLi~AaDVl  198 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG----L-YDTLYVAEAVLFLEDLT--QERFDLIVAADVL  198 (287)
T ss_pred             cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc----c-hHHHHHHHHHHHhhhcc--CCcccchhhhhHH
Confidence            579999999999999999888889999999999999998752    1 12566677766664332  25899997753  


Q ss_pred             CCCCccHHHHH-HHHhCCCCcEEEEee
Q 043853          146 NRPGMHMKLIK-FLLKLKAPRIVYVSC  171 (222)
Q Consensus       146 p~~~~~~~~~~-~l~~l~~~~~v~~~~  171 (222)
                      |+-+....+.- ....++++|.+.+|.
T Consensus       199 ~YlG~Le~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         199 PYLGALEGLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             HhhcchhhHHHHHHHhcCCCceEEEEe
Confidence            44443344444 344589999988777

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=1.8e-06  Score=72.73  Aligned_cols=125  Identities=21%  Similarity=0.248  Sum_probs=91.4

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNA  117 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v  117 (222)
                      ..||.+..+....+.-.+.......  -..+|+|..+|||.-++.++...+  +++.-|+||.+++.+++|++.|...+.
T Consensus        27 pVFYNP~m~~NRDlsV~~l~~~~~~--~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~  104 (380)
T COG1867          27 PVFYNPAMEFNRDLSVLVLKAFGKL--LPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDA  104 (380)
T ss_pred             cceeCchhhhccchhHHHHHHhhcc--CCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccc
Confidence            3788776665555543333333211  157999999999999998886533  799999999999999999999966667


Q ss_pred             EEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHH-HHHhCCCCcEEEEee
Q 043853          118 TFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIK-FLLKLKAPRIVYVSC  171 (222)
Q Consensus       118 ~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~-~l~~l~~~~~v~~~~  171 (222)
                      ..++.|+..+.....   ..||+|=+||-  |...++++ ++...+.+|++-+++
T Consensus       105 ~v~n~DAN~lm~~~~---~~fd~IDiDPF--GSPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         105 EVINKDANALLHELH---RAFDVIDIDPF--GSPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             eeecchHHHHHHhcC---CCccEEecCCC--CCCchHHHHHHHHhhcCCEEEEEe
Confidence            788899988876533   47999999985  22344555 445567788887666

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.56  E-value=4.7e-07  Score=72.75  Aligned_cols=38  Identities=29%  Similarity=0.356  Sum_probs=33.6

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHH
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISD  104 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~  104 (222)
                      ++.++||+|||+|+++..+++. ..+++|+|.++.++..
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4779999999999999999887 4589999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.56  E-value=5.3e-07  Score=74.93  Aligned_cols=83  Identities=22%  Similarity=0.269  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           65 DDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        65 ~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      +.++..|||++++.|+-+..+++..   ..+++.|+++.-++..++|++..|+.++.+...|..........  ..||.|
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~--~~fd~V  160 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE--SKFDRV  160 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT--TTEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc--cccchh
Confidence            4468899999999999999888753   49999999999999999999999999999998998887433221  259999


Q ss_pred             EECCCCCC
Q 043853          142 ISDPNRPG  149 (222)
Q Consensus       142 i~~pp~~~  149 (222)
                      +.|+|.++
T Consensus       161 lvDaPCSg  168 (283)
T PF01189_consen  161 LVDAPCSG  168 (283)
T ss_dssp             EEECSCCC
T ss_pred             hcCCCccc
Confidence            99999444

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.53  E-value=2.8e-06  Score=63.32  Aligned_cols=119  Identities=21%  Similarity=0.312  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhcC--CCCCCCeEEEEecccchhHHHHhh-----c-CCeEEEEeCCHHHHHHHHHHHHHcC--C-CcEE
Q 043853           50 AEVLYKLIEDCAGL--RDDGSEIVLDLFCGTGTIGLTLAR-----W-VKHVYGYEVVPQAISDACRNAKLNN--I-SNAT  118 (222)
Q Consensus        50 ~~~~~~~i~~~~~~--~~~~~~~vlDlg~G~G~~~~~la~-----~-~~~v~gvD~~~~~i~~a~~n~~~~~--~-~~v~  118 (222)
                      -+.+.+.+...+..  ...+...|+|+|||.|+++..++.     . ..+|+|+|.++..++.+++..+..+  . .+.+
T Consensus         6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~   85 (141)
T PF13679_consen    6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLS   85 (141)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccch
Confidence            33445555554432  123467999999999999998887     3 4599999999999999999998877  3 3467


Q ss_pred             EEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          119 FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       119 ~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      +..++..+...     ....++++.--...++...+++....-....++.+.|..
T Consensus        86 ~~~~~~~~~~~-----~~~~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vpCCy  135 (141)
T PF13679_consen   86 FIQGDIADESS-----SDPPDILVGLHACGDLSDRALRLFIRPNARFLVLVPCCY  135 (141)
T ss_pred             hhccchhhhcc-----cCCCeEEEEeecccchHHHHHHHHHHcCCCEEEEcCCcc
Confidence            77776655432     135666766656777888888877663344555667654

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.48  E-value=8.3e-06  Score=67.51  Aligned_cols=102  Identities=19%  Similarity=0.166  Sum_probs=82.0

Q ss_pred             CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++||-+|-|.|+.+-.+.+..  .+++.+|+++..++.+++-+....    .++++++.+|..++.....   .+||+|
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~---~~fDvI  153 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE---EKFDVI  153 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC---CcCCEE
Confidence            3699999999999999888865  599999999999999999987654    3569999999999987644   379999


Q ss_pred             EECCCCC-C-----ccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          142 ISDPNRP-G-----MHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       142 i~~pp~~-~-----~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      ++|.... +     ...++.+.+.+ |+++|++...+.
T Consensus       154 i~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~  191 (282)
T COG0421         154 IVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG  191 (282)
T ss_pred             EEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence            9986311 2     24677777765 789998876643

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.45  E-value=1.5e-06  Score=70.78  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=78.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +.++||=+|-|.|+.+..+.+..  .+++.+|+||..++.|++.+....    -++++++.+|+..+......  .+||+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~--~~yDv  153 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE--EKYDV  153 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS--T-EEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC--CcccE
Confidence            47899999999999999888764  599999999999999999886642    24699999999999876432  17999


Q ss_pred             EEECCCCC------CccHHHHHHHHh-CCCCcEEEEee
Q 043853          141 VISDPNRP------GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~------~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      |+.|.+..      -...++.+.+++ |+++|++.+..
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            99987531      134567776654 88999887654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.45  E-value=9.1e-07  Score=74.98  Aligned_cols=106  Identities=21%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             CCCeEEEEecccchhHHHH-hhcCCeEEEEeCCHHHHHHHHHHHHHcC-------C---CcEEEEeCchhchh--hhcCC
Q 043853           67 GSEIVLDLFCGTGTIGLTL-ARWVKHVYGYEVVPQAISDACRNAKLNN-------I---SNATFVQGDLNKIG--GDFGN  133 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~l-a~~~~~v~gvD~~~~~i~~a~~n~~~~~-------~---~~v~~~~~d~~~~~--~~~~~  133 (222)
                      ++.+|||+|||.|+-..-. ......++|+|+++..|+.|++..+...       .   -...++.+|.....  ..+..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            5789999999999977744 4456799999999999999999983311       1   13688888875432  11222


Q ss_pred             CCCCCcEEEECCC--CC----CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          134 AFPKPDIVISDPN--RP----GMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       134 ~~~~fD~ii~~pp--~~----~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      ...+||+|-+-..  +.    .....++..+.. |+|||+++.++-
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            2248999977653  11    112234444433 789998886663

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.44  E-value=6.2e-07  Score=69.18  Aligned_cols=105  Identities=23%  Similarity=0.255  Sum_probs=75.5

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  131 (222)
                      +.+++....+.-  .+++|||+|+|+|..+++.++.+ ..+++.|++|.....++-|++.|++ ++.+...|... ..  
T Consensus        67 lAR~i~~~PetV--rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~~--  140 (218)
T COG3897          67 LARYIDDHPETV--RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-SP--  140 (218)
T ss_pred             HHHHHhcCcccc--ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-CC--
Confidence            344555544333  37899999999999999888765 4899999999999999999999998 48898888866 22  


Q ss_pred             CCCCCCCcEEEECCC--CCCccHHHHHHHHhCCCCcEE
Q 043853          132 GNAFPKPDIVISDPN--RPGMHMKLIKFLLKLKAPRIV  167 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp--~~~~~~~~~~~l~~l~~~~~v  167 (222)
                          ..||+++..--  .......++.....+...|..
T Consensus       141 ----~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~  174 (218)
T COG3897         141 ----PAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAA  174 (218)
T ss_pred             ----cceeEEEeeceecCchHHHHHHHHHHHHHhCCCE
Confidence                47999876532  123345555555555444433

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.42  E-value=2e-07  Score=77.53  Aligned_cols=97  Identities=23%  Similarity=0.248  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHH-------HHHHHHHHcCCCc--
Q 043853           46 NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAIS-------DACRNAKLNNISN--  116 (222)
Q Consensus        46 ~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~-------~a~~n~~~~~~~~--  116 (222)
                      |..+...+.-.+.+++...  +++.|.|.+.|||++.+..|..+..|+|.|||-.++.       -.+.|+++.|.+.  
T Consensus       189 nTSmDAeLSli~AN~Amv~--pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f  266 (421)
T KOG2671|consen  189 NTSMDAELSLIMANQAMVK--PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF  266 (421)
T ss_pred             CcccchhHHHHHhhhhccC--CCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchh
Confidence            3444445444444444444  4899999999999999999999999999999988876       4578888888643  


Q ss_pred             EEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853          117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+..+|....+..-   ...||.|+||||+
T Consensus       267 ldvl~~D~sn~~~rs---n~~fDaIvcDPPY  294 (421)
T KOG2671|consen  267 LDVLTADFSNPPLRS---NLKFDAIVCDPPY  294 (421)
T ss_pred             hheeeecccCcchhh---cceeeEEEeCCCc
Confidence            888999987754331   2479999999995

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.41  E-value=8.8e-07  Score=65.82  Aligned_cols=58  Identities=28%  Similarity=0.389  Sum_probs=50.9

Q ss_pred             eEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853           70 IVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI  127 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~  127 (222)
                      .++|+|||.|..++.+++.++  +++++|.+|.+++.+++|++.++.+++++++..+.+-
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence            489999999999998887655  6999999999999999999999887788888776553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.40  E-value=3.7e-06  Score=66.52  Aligned_cols=112  Identities=22%  Similarity=0.276  Sum_probs=65.1

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHH-------cCC--CcEEEEeC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKL-------NNI--SNATFVQG  122 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~-------~~~--~~v~~~~~  122 (222)
                      ...+.+.+++.  +++.++|||||.|...+.+|.  .+.+.+|||+.+...+.|+...+.       .|.  ..+++.++
T Consensus        31 ~~~il~~~~l~--~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g  108 (205)
T PF08123_consen   31 VSKILDELNLT--PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG  108 (205)
T ss_dssp             HHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred             HHHHHHHhCCC--CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence            34444555544  478999999999999886664  355799999999999888765433       333  24899999


Q ss_pred             chhchhh--hcCCCCCCCcEEEECCCC--CCccHHHHHHHHhCCCCcEEEEee
Q 043853          123 DLNKIGG--DFGNAFPKPDIVISDPNR--PGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       123 d~~~~~~--~~~~~~~~fD~ii~~pp~--~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      |..+...  ...   ...|+|++|--.  ..+...+.+.+..++++..++ +.
T Consensus       109 dfl~~~~~~~~~---s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II-s~  157 (205)
T PF08123_consen  109 DFLDPDFVKDIW---SDADVVFVNNTCFDPDLNLALAELLLELKPGARII-ST  157 (205)
T ss_dssp             -TTTHHHHHHHG---HC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE-ES
T ss_pred             CccccHhHhhhh---cCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE-EC
Confidence            9866432  111   257999998541  234445555555577776665 44

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.37  E-value=2.2e-06  Score=67.82  Aligned_cols=123  Identities=13%  Similarity=0.109  Sum_probs=88.2

Q ss_pred             ceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcC-CC---CCCCeEEEEecccchhHHHHh--hcCCeEEEEeCC
Q 043853           25 NITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL-RD---DGSEIVLDLFCGTGTIGLTLA--RWVKHVYGYEVV   98 (222)
Q Consensus        25 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~-~~---~~~~~vlDlg~G~G~~~~~la--~~~~~v~gvD~~   98 (222)
                      .+...+|++++.--|.+|..+..+-...++..+.+++.. .+   .++-++||+|.|.-.+--.+.  +.+...+|.|+|
T Consensus        32 AlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid  111 (292)
T COG3129          32 ALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEID  111 (292)
T ss_pred             HHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccC
Confidence            566677899866445566666677777778888887642 11   245689999988766544443  346699999999


Q ss_pred             HHHHHHHHHHHHHc-CCCc-EEEEeC-chhchhhhcCCCCCCCcEEEECCCC
Q 043853           99 PQAISDACRNAKLN-NISN-ATFVQG-DLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        99 ~~~i~~a~~n~~~~-~~~~-v~~~~~-d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+++.|+.++..| ++++ +++... |-..+........+.||+.+||||.
T Consensus       112 ~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPF  163 (292)
T COG3129         112 SQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPF  163 (292)
T ss_pred             HHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCc
Confidence            99999999999998 7765 777664 4444444444445689999999993

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.33  E-value=1.1e-06  Score=69.92  Aligned_cols=92  Identities=13%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             CeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853           69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPN-  146 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-  146 (222)
                      ..++|+|||+|--+..+|....+|+|+|.|+.|++.|++.....-.. ...+...+..++    .+..+..|+|++-.- 
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L----~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL----LGGEESVDLITAAQAV  110 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc----cCCCcceeeehhhhhH
Confidence            38999999999777788888889999999999999998754221110 022333333332    223468999988652 


Q ss_pred             -CCCccHHHHHHHH-hCCCCc
Q 043853          147 -RPGMHMKLIKFLL-KLKAPR  165 (222)
Q Consensus       147 -~~~~~~~~~~~l~-~l~~~~  165 (222)
                       +-++ +++...+. .|++.|
T Consensus       111 HWFdl-e~fy~~~~rvLRk~G  130 (261)
T KOG3010|consen  111 HWFDL-ERFYKEAYRVLRKDG  130 (261)
T ss_pred             Hhhch-HHHHHHHHHHcCCCC
Confidence             3333 44444443 366554

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.31  E-value=4.6e-05  Score=62.62  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=74.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcC----CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV----KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~----~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      ...+|+|+.||.|.-.+-+....    ..|.-.|.|+..++..++.++..|+++ ++|.++|+++... +..-...++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~l~p~P~l~  213 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAALDPAPTLA  213 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhccCCCCCEE
Confidence            35799999999999888554332    379999999999999999999999998 5999999988632 22222467887


Q ss_pred             EECC-----CCCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          142 ISDP-----NRPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       142 i~~p-----p~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      +.+-     |...+....+.-+.. +.|+|.++.+.
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            7653     222223333333433 78888887666

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.26  E-value=1.6e-05  Score=67.07  Aligned_cols=103  Identities=23%  Similarity=0.280  Sum_probs=77.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHH---cC--C--CcEEEEeCchhchhhhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKL---NN--I--SNATFVQGDLNKIGGDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~---~~--~--~~v~~~~~d~~~~~~~~~~~~~~  137 (222)
                      ...++|=+|.|-|.-.-.+.+.  ..+++-+|+||.|++.++++.-.   |+  .  ++++++..|+.++..+..   +.
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---~~  365 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---DM  365 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc---cc
Confidence            4689999999999888877764  45999999999999999966533   22  2  359999999999987633   58


Q ss_pred             CcEEEECCCCCC-------ccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          138 PDIVISDPNRPG-------MHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       138 fD~ii~~pp~~~-------~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      ||++|.|.|.+.       +..++-..+++ +++.|++.+...
T Consensus       366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            999999876221       23445555544 788888877664

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=98.26  E-value=4.1e-06  Score=69.42  Aligned_cols=91  Identities=23%  Similarity=0.287  Sum_probs=66.4

Q ss_pred             eEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853           70 IVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP  148 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~  148 (222)
                      +++|++||.|+++..+.+.+ ..+.++|+++.+++..+.|...      .++.+|+.++.....  ...+|+++.+||..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~--~~~~D~l~~gpPCq   73 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDF--IPDIDLLTGGFPCQ   73 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhc--CCCCCEEEeCCCCh
Confidence            68999999999999887654 4788999999999999998642      256778777654310  24699999999822


Q ss_pred             ----------------CccHHHHHHHHhCCCCcEEE
Q 043853          149 ----------------GMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       149 ----------------~~~~~~~~~l~~l~~~~~v~  168 (222)
                                      .+...+++.+..++|.-+++
T Consensus        74 ~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~  109 (275)
T cd00315          74 PFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLL  109 (275)
T ss_pred             hhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEE
Confidence                            13345666666677766555

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.25  E-value=3.2e-06  Score=70.03  Aligned_cols=119  Identities=20%  Similarity=0.139  Sum_probs=75.2

Q ss_pred             HHHHHHHH-hcCCCCCCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-C-----cEEEEeCch
Q 043853           53 LYKLIEDC-AGLRDDGSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNI-S-----NATFVQGDL  124 (222)
Q Consensus        53 ~~~~i~~~-~~~~~~~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~-~-----~v~~~~~d~  124 (222)
                      +-+||... ++....++..++|+|||.|+-++-.-+ +...++|+||....|+.|++..+...- .     .+.++.+|.
T Consensus       102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc  181 (389)
T KOG1975|consen  102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC  181 (389)
T ss_pred             hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence            34555553 233345578999999999999985544 456999999999999999988865422 1     278999987


Q ss_pred             hchh-hh-cCCCCCCCcEEEECCC--CCCc-cHHHHH----HHHhCCCCcEEEEee
Q 043853          125 NKIG-GD-FGNAFPKPDIVISDPN--RPGM-HMKLIK----FLLKLKAPRIVYVSC  171 (222)
Q Consensus       125 ~~~~-~~-~~~~~~~fD~ii~~pp--~~~~-~~~~~~----~l~~l~~~~~v~~~~  171 (222)
                      +.-. .. +..++.+||+|-|-..  +.-. ...+..    ....|+|||+.+-+.
T Consensus       182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi  237 (389)
T KOG1975|consen  182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI  237 (389)
T ss_pred             chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence            5432 11 2223334999966542  2111 122222    233488999766443

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.23  E-value=9.1e-06  Score=69.52  Aligned_cols=85  Identities=15%  Similarity=0.116  Sum_probs=71.9

Q ss_pred             CCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           63 LRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        63 ~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      +.++++.+|||.++-.|+-+.++|..   -.-|+|.|.+..-++..+.|+...|+.+..+.+.|..+++.....  ..||
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~--~~fD  314 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP--GSFD  314 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC--cccc
Confidence            45778999999999999988877653   348999999999999999999999999999999999887644321  2799


Q ss_pred             EEEECCCCCC
Q 043853          140 IVISDPNRPG  149 (222)
Q Consensus       140 ~ii~~pp~~~  149 (222)
                      -|++|.|.++
T Consensus       315 RVLLDAPCSG  324 (460)
T KOG1122|consen  315 RVLLDAPCSG  324 (460)
T ss_pred             eeeecCCCCC
Confidence            9999999655

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.22  E-value=8e-05  Score=59.02  Aligned_cols=142  Identities=20%  Similarity=0.160  Sum_probs=88.6

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+||-+|+.+|+...+++.-.   ..|+|+|.||...+..-.-++..  +|+-.+.+|+..... +..--+.+|+|+
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~-Y~~lv~~VDvI~  148 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEK-YRMLVEMVDVIF  148 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGG-GTTTS--EEEEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHH-hhcccccccEEE
Confidence            458999999999999999998743   49999999998776666555443  478899999976433 222225899999


Q ss_pred             ECCCCCCccHHHHHHHH-hCCCCcEEEEeeC---------c-cchHhhHHHhhccCCCCccCCCeEEeEeeeeccCC-CC
Q 043853          143 SDPNRPGMHMKLIKFLL-KLKAPRIVYVSCN---------P-ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFP-HT  210 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~---------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~~  210 (222)
                      .|-.-++-..-+..... -|+++|.++++-.         + ..+..+...|.        +.+|++.+..  ++-| +.
T Consensus       149 ~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~--------~~~~~~~e~i--~LePy~~  218 (229)
T PF01269_consen  149 QDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLK--------EEGFKPLEQI--TLEPYER  218 (229)
T ss_dssp             EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHH--------CTTCEEEEEE--E-TTTST
T ss_pred             ecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHH--------HcCCChheEe--ccCCCCC
Confidence            99764432222222232 2688887775541         1 23344456664        5678877643  4556 44


Q ss_pred             CceeEEEEEE
Q 043853          211 PHIECVCLLE  220 (222)
Q Consensus       211 ~~~~~v~~~~  220 (222)
                      .|.-.|..+.
T Consensus       219 dH~~vv~~y~  228 (229)
T PF01269_consen  219 DHAMVVGRYR  228 (229)
T ss_dssp             TEEEEEEEE-
T ss_pred             CcEEEEEEec
Confidence            5777777664

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.19  E-value=0.00012  Score=57.77  Aligned_cols=117  Identities=23%  Similarity=0.260  Sum_probs=83.4

Q ss_pred             CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+.|+||-.|++.+.+.+.+.  .+++.|+++..++.|.+|++.+++.. +++..+|.......    .+.+|++++ 
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~----~d~~d~ivI-   91 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL----EDEIDVIVI-   91 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc----cCCcCEEEE-
Confidence            55699999999999999988654  89999999999999999999999865 89999998655432    236898877 


Q ss_pred             CCCCCccHHHHHHHHh-----CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEe
Q 043853          145 PNRPGMHMKLIKFLLK-----LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSL  201 (222)
Q Consensus       145 pp~~~~~~~~~~~l~~-----l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  201 (222)
                         .|+....+..+..     ++.-..+++  .|......++..+.       +++|.+..-
T Consensus        92 ---AGMGG~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~-------~~~~~I~~E  141 (226)
T COG2384          92 ---AGMGGTLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLS-------ANSYEIKAE  141 (226)
T ss_pred             ---eCCcHHHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHH-------hCCceeeee
Confidence               3666555554433     222122332  35555666665553       677776653

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.14  E-value=1.8e-05  Score=64.03  Aligned_cols=92  Identities=22%  Similarity=0.219  Sum_probs=63.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC-
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP-  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p-  145 (222)
                      ...++||||+|.|..+..++....+|++.|.|+.|....++.    |   .+++..+  ++...    +.+||+|.|-- 
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k----g---~~vl~~~--~w~~~----~~~fDvIscLNv  160 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK----G---FTVLDID--DWQQT----DFKFDVISCLNV  160 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC----C---CeEEehh--hhhcc----CCceEEEeehhh
Confidence            357899999999999999999999999999999997777652    3   3343322  22221    24799996632 


Q ss_pred             -CCCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          146 -NRPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       146 -p~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                       -|......+++.++. ++|+|.++++.
T Consensus       161 LDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  161 LDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             hhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence             233334555665544 68888876544

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.12  E-value=2.6e-05  Score=65.15  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-CCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-AFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~ii~  143 (222)
                      ++..++|..+|.|+.+..+++..  .+++|+|.|+.+++.|++.++..+ .++++++++..++...+.. ..+.+|.|+.
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~   98 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGILV   98 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence            46799999999999999888753  599999999999999999887543 3599999999887654422 2246999988


Q ss_pred             CC
Q 043853          144 DP  145 (222)
Q Consensus       144 ~p  145 (222)
                      |.
T Consensus        99 DL  100 (305)
T TIGR00006        99 DL  100 (305)
T ss_pred             ec
Confidence            74

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.10  E-value=9.2e-05  Score=58.80  Aligned_cols=92  Identities=26%  Similarity=0.228  Sum_probs=70.6

Q ss_pred             CCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCC-CcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPK-PDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~-fD~ii~~  144 (222)
                      +.+++|+|+|.|.-++.+|-.  ..+++-+|....-+...+.-.+..+++|++++++.++++...     .+ ||+|.+=
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-----~~~~D~vtsR  142 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-----KKQYDVVTSR  142 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-----cccCcEEEee
Confidence            589999999999999987733  337999999999999999999999999999999999998653     24 9999873


Q ss_pred             CCCCCccHHHHHHHHh-CCCCcE
Q 043853          145 PNRPGMHMKLIKFLLK-LKAPRI  166 (222)
Q Consensus       145 pp~~~~~~~~~~~l~~-l~~~~~  166 (222)
                      .-  .....+.+.... ++++|.
T Consensus       143 Av--a~L~~l~e~~~pllk~~g~  163 (215)
T COG0357         143 AV--ASLNVLLELCLPLLKVGGG  163 (215)
T ss_pred             hc--cchHHHHHHHHHhcccCCc
Confidence            32  112344444444 455454

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.10  E-value=1.6e-05  Score=61.79  Aligned_cols=111  Identities=15%  Similarity=0.156  Sum_probs=77.6

Q ss_pred             CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcC-------CCcEEEEeCchhchhhhcCCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNN-------ISNATFVQGDLNKIGGDFGNAFPKP  138 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~~f  138 (222)
                      ...+.|||||-|++.+.++...+  -++|.||--...++.++.++...       ..|+.+...++..+...+-..+...
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            45799999999999999999877  79999999999999999998775       5678899999888876543332222


Q ss_pred             cEE--EECCC-------CCCccHHHHHHHH-hCCCCcEEEEeeCccchHh
Q 043853          139 DIV--ISDPN-------RPGMHMKLIKFLL-KLKAPRIVYVSCNPATCAR  178 (222)
Q Consensus       139 D~i--i~~pp-------~~~~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~  178 (222)
                      -+.  +-+|.       +.-....++..+. .+..+|.+|..++......
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~  190 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHE  190 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHH
Confidence            233  33443       2222334444443 3689999998876544433

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.09  E-value=7.3e-05  Score=58.16  Aligned_cols=99  Identities=21%  Similarity=0.152  Sum_probs=73.8

Q ss_pred             CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ..+++|+|+|.|.-++.+|-..  .+++.+|.+..-+...+.-+...+++|++++++.+++..     ....||+|++=.
T Consensus        49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-----~~~~fd~v~aRA  123 (184)
T PF02527_consen   49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE-----YRESFDVVTARA  123 (184)
T ss_dssp             CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT-----TTT-EEEEEEES
T ss_pred             CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc-----cCCCccEEEeeh
Confidence            3389999999999999777544  489999999999999999999999999999999999811     125899999843


Q ss_pred             CCCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          146 NRPGMHMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       146 p~~~~~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                      -  .....+.+.... ++++|.++.--.+
T Consensus       124 v--~~l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  124 V--APLDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             S--SSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             h--cCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            2  223566666655 5677777665554

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=98.08  E-value=1.3e-05  Score=67.52  Aligned_cols=91  Identities=24%  Similarity=0.379  Sum_probs=68.7

Q ss_pred             eEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC--
Q 043853           70 IVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN--  146 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--  146 (222)
                      +++|++||.|++++.+.+.+ .-+.++|+++.+++..+.|..       ....+|+.++.......  .+|+++..||  
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~--~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK--DVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH--T-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc--cceEEEeccCCc
Confidence            69999999999999988765 478899999999999999974       78889998886542211  4999999998  


Q ss_pred             --------------CCCccHHHHHHHHhCCCCcEEEE
Q 043853          147 --------------RPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       147 --------------~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                                    +..+...+++.+..++|.-+++-
T Consensus        73 ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~E  109 (335)
T PF00145_consen   73 GFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLE  109 (335)
T ss_dssp             TTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEE
T ss_pred             eEeccccccccccccchhhHHHHHHHhhccceEEEec
Confidence                          33466788888888888776663

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.06  E-value=3.1e-05  Score=60.83  Aligned_cols=103  Identities=11%  Similarity=-0.012  Sum_probs=72.4

Q ss_pred             CeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCC----CCCCCcEE
Q 043853           69 EIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGN----AFPKPDIV  141 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~----~~~~fD~i  141 (222)
                      .+|||||||||-.+..+|+..+  ...-.|.++......+..+...+.+| ...+..|+.+....+..    ....||.|
T Consensus        27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            3699999999999999998766  67788999999888888888888887 45666677665333321    12479999


Q ss_pred             EECC-----CCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          142 ISDP-----NRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~p-----p~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      ++.=     |+.....-+...-..|+++|.+++..
T Consensus       107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen  107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            7742     33333222333334578999887554

The function of this family is unknown.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.03  E-value=2.3e-05  Score=69.99  Aligned_cols=93  Identities=25%  Similarity=0.309  Sum_probs=68.3

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC------CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchh
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV------KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLN  125 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~------~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~  125 (222)
                      +.+++.+++..  .+..+|+|..||+|++.+..++..      ..++|.|+++.....|+.|+-.+|++ ++....+|..
T Consensus       174 v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl  251 (489)
T COG0286         174 VSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL  251 (489)
T ss_pred             HHHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence            34455555543  235699999999999988665421      46999999999999999999999997 3677777765


Q ss_pred             chhhhcC-CCCCCCcEEEECCCC
Q 043853          126 KIGGDFG-NAFPKPDIVISDPNR  147 (222)
Q Consensus       126 ~~~~~~~-~~~~~fD~ii~~pp~  147 (222)
                      .-+.... ....+||.|++|||.
T Consensus       252 ~~~~~~~~~~~~~~D~viaNPPf  274 (489)
T COG0286         252 SNPKHDDKDDKGKFDFVIANPPF  274 (489)
T ss_pred             cCCcccccCCccceeEEEeCCCC
Confidence            5443321 122579999999994

>PRK11524 putative methyltransferase; Provisional

Probab=98.01  E-value=1.6e-05  Score=66.20  Aligned_cols=46  Identities=26%  Similarity=0.332  Sum_probs=42.7

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL  111 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~  111 (222)
                      .+++.|||.+||||+.+++..+.+.+.+|+|++++.++.|++.+..
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            5689999999999999999999999999999999999999998753

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.99  E-value=8.6e-05  Score=60.16  Aligned_cols=91  Identities=21%  Similarity=0.269  Sum_probs=61.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|+|+|+|+|.++..+++..+  +++..|. |..++.+++      .++++++.+|+.+-.       +.+|++++.
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~-------P~~D~~~l~  165 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPL-------PVADVYLLR  165 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCC-------SSESEEEEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhhh-------ccccceeee
Confidence            467899999999999999998765  8899998 899999988      457999999998322       138998775


Q ss_pred             CCC-CCccHH---HHHHHH-hCCCC--cEEEEee
Q 043853          145 PNR-PGMHMK---LIKFLL-KLKAP--RIVYVSC  171 (222)
Q Consensus       145 pp~-~~~~~~---~~~~l~-~l~~~--~~v~~~~  171 (222)
                      --- ..-..+   +++.+. .++|+  +.+++..
T Consensus       166 ~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  166 HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            321 111223   333332 37776  6665444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.99  E-value=1.2e-05  Score=63.98  Aligned_cols=42  Identities=26%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHH
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~  107 (222)
                      .+++.|||.+||+|+.+++..+.+.+.+|+|+++..++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            458999999999999999999999999999999999999975

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK00536 speE spermidine synthase; Provisional

Probab=97.98  E-value=0.00014  Score=59.59  Aligned_cols=97  Identities=15%  Similarity=0.018  Sum_probs=70.9

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc----CCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN----NISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      ++.++||=+|.|-|+.+..+.+...+|+-+|+|+.+++.+++.+...    .-++++++..    +...   ..++||+|
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~---~~~~fDVI  143 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDL---DIKKYDLI  143 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhc---cCCcCCEE
Confidence            45789999999999999999887669999999999999999965442    2345777751    1111   12579999


Q ss_pred             EECCCCCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          142 ISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      |.|...   .+.+.+.+++ |+++|++...+.
T Consensus       144 IvDs~~---~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        144 ICLQEP---DIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             EEcCCC---ChHHHHHHHHhcCCCcEEEECCC
Confidence            999432   2455555544 799999887664

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.97  E-value=0.00085  Score=53.93  Aligned_cols=126  Identities=17%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             CCCeEEEEecccchhHHHHh--hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLA--RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la--~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .+++||=+|=.- ..++++|  ....+|+.+|+|+..++..++.++..|++ ++..+.|+....+...  .++||++++|
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~--~~~fD~f~TD  119 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL--RGKFDVFFTD  119 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT--SS-BSEEEE-
T ss_pred             cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH--hcCCCEEEeC
Confidence            478999888543 2333444  34569999999999999999999999997 9999999977654321  1589999999


Q ss_pred             CCCC--CccHHHHHHHHhCCC-CcEEEEeeCccc--hH--hhHHHhhccCCCCccCCCeEEeEeee
Q 043853          145 PNRP--GMHMKLIKFLLKLKA-PRIVYVSCNPAT--CA--RDLDYLCHGVGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       145 pp~~--~~~~~~~~~l~~l~~-~~~v~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~~~~~~~~~  203 (222)
                      ||+.  ++.-=+-+.+..++. ++..|++.....  ..  ..++.+.       +..|+-+..+.+
T Consensus       120 PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l-------~~~gl~i~dii~  178 (243)
T PF01861_consen  120 PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFL-------LEMGLVITDIIP  178 (243)
T ss_dssp             --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHH-------HTS--EEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHH-------HHCCcCHHHHHh
Confidence            9965  222222233444654 447777765432  22  2344333       266777777554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.93  E-value=4.5e-05  Score=61.21  Aligned_cols=88  Identities=23%  Similarity=0.226  Sum_probs=53.6

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH---HcC-C-----CcEEEEeCchh
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK---LNN-I-----SNATFVQGDLN  125 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~---~~~-~-----~~v~~~~~d~~  125 (222)
                      +.+...+.+.+....+|||..+|-|.-++.+|..+.+|+++|.||.+....+.-++   ... .     .+++++++|..
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~  142 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL  142 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence            33445555555334599999999999999888778899999999988765554332   221 1     25999999999


Q ss_pred             chhhhcCCCCCCCcEEEECC
Q 043853          126 KIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +++..   +.+.||+|.+||
T Consensus       143 ~~L~~---~~~s~DVVY~DP  159 (234)
T PF04445_consen  143 EYLRQ---PDNSFDVVYFDP  159 (234)
T ss_dssp             CHCCC---HSS--SEEEE--
T ss_pred             HHHhh---cCCCCCEEEECC
Confidence            98762   235899999998

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.91  E-value=2.6e-06  Score=60.06  Aligned_cols=96  Identities=20%  Similarity=0.204  Sum_probs=40.1

Q ss_pred             EEEecccchhHHHHhhcC-----CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           72 LDLFCGTGTIGLTLARWV-----KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        72 lDlg~G~G~~~~~la~~~-----~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ||+|+..|..++.+++..     .+++++|..+. .+.++++++..+++ ++++++++..+....+.  ..++|++++|-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~--~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP--DGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH--H--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC--CCCEEEEEECC
Confidence            689999999888776532     27999999986 44555555555554 49999999988766554  24899999997


Q ss_pred             CC--CCccHHHHHHHHhCCCCcEEEEe
Q 043853          146 NR--PGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       146 p~--~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ..  ......+......+++++++++.
T Consensus        78 ~H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   78 DHSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            52  22223333344457888887754

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=1.5e-05  Score=69.45  Aligned_cols=102  Identities=22%  Similarity=0.284  Sum_probs=82.9

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .-+|||.-|++|.-++..|+.   ..++++.|.++.+++..++|++.|++++ ++..++|+.............||+|=+
T Consensus       110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL  189 (525)
T KOG1253|consen  110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL  189 (525)
T ss_pred             cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence            457999999999999988875   3489999999999999999999999887 899999998776554333358999999


Q ss_pred             CCCCCCccHHHHH-HHHhCCCCcEEEEee
Q 043853          144 DPNRPGMHMKLIK-FLLKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~~~~~~-~l~~l~~~~~v~~~~  171 (222)
                      ||-  |....+++ ++..+..+|+++++|
T Consensus       190 DPy--Gs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  190 DPY--GSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             CCC--CCccHHHHHHHHHhhcCCEEEEEe
Confidence            985  33345555 455678999999888

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=0.0022  Score=50.08  Aligned_cols=144  Identities=20%  Similarity=0.244  Sum_probs=92.4

Q ss_pred             CCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           63 LRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        63 ~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      .+-.++.+||=+|+-+|+...+++.-.  ..++|+|.||......-..++..  +|+-.+.+|+.... .+.---+..|+
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~-~Y~~~Ve~VDv  148 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPE-KYRHLVEKVDV  148 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcH-HhhhhcccccE
Confidence            344568999999999999999988743  48999999999887776666542  36888999986543 22111146999


Q ss_pred             EEECCCCCCccHHHHHHHHh-CCCCcEEEEee---------CccchHh-hHHHhhccCCCCccCCCeEEeEeeeeccCC-
Q 043853          141 VISDPNRPGMHMKLIKFLLK-LKAPRIVYVSC---------NPATCAR-DLDYLCHGVGDQNIKGCYKLKSLQPVDMFP-  208 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~---------~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-  208 (222)
                      |+.|-.-++-..-+..-... ++++|.++++-         ++.+..+ ++..|.        +++|++.+  .+++-| 
T Consensus       149 iy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~--------~~~f~i~e--~~~LePy  218 (231)
T COG1889         149 IYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLE--------EGGFEILE--VVDLEPY  218 (231)
T ss_pred             EEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHH--------hcCceeeE--EeccCCc
Confidence            99987533222222222222 57777554332         3444444 556664        56777766  455666 


Q ss_pred             CCCceeEEEEE
Q 043853          209 HTPHIECVCLL  219 (222)
Q Consensus       209 ~~~~~~~v~~~  219 (222)
                      .+.|.-.+...
T Consensus       219 e~DH~~i~~~~  229 (231)
T COG1889         219 EKDHALIVAKY  229 (231)
T ss_pred             ccceEEEEEee
Confidence            45577666554

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.87  E-value=0.00012  Score=62.25  Aligned_cols=95  Identities=23%  Similarity=0.424  Sum_probs=73.1

Q ss_pred             CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ..+++|++||.|++.+.+...+ .-+.++|+++.+++.-+.|...     ..++..|+.+......... .+|+++..||
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~-~~DvligGpP   76 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKS-DVDVLIGGPP   76 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhcccc-CCCEEEeCCC
Confidence            4689999999999999887755 5788999999999999998752     5677788877655422111 6899999998


Q ss_pred             ----------------CCCccHHHHHHHHhCCCCcEEE
Q 043853          147 ----------------RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       147 ----------------~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                                      |..+..++.+.+..++|.-+++
T Consensus        77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~  114 (328)
T COG0270          77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVL  114 (328)
T ss_pred             CcchhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEE
Confidence                            3456678888888888854444

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.84  E-value=9.6e-05  Score=62.45  Aligned_cols=89  Identities=24%  Similarity=0.288  Sum_probs=64.6

Q ss_pred             EEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC--
Q 043853           71 VLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR--  147 (222)
Q Consensus        71 vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~--  147 (222)
                      |+|++||.|++++.+.+.+. -+.++|+++.+++..+.|..     + .++.+|+.++....   ...+|+++..||.  
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~---~~~~dvl~gg~PCq~   71 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD---IPDFDILLGGFPCQP   71 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh---CCCcCEEEecCCCcc
Confidence            68999999999998877655 56789999999999998863     2 45568887765321   2368999999982  


Q ss_pred             --------------CCccHHHHHHHHhCCCCcEEE
Q 043853          148 --------------PGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       148 --------------~~~~~~~~~~l~~l~~~~~v~  168 (222)
                                    ..+...+++.+..++|.-+++
T Consensus        72 fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~  106 (315)
T TIGR00675        72 FSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLL  106 (315)
T ss_pred             cchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEe
Confidence                          123445666666677765544

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13699 putative methylase; Provisional

Probab=97.84  E-value=6.1e-05  Score=60.63  Aligned_cols=47  Identities=21%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN  112 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~  112 (222)
                      .+++.|||.+||+|+.+++..+.+.+.+|+|++++..+.|.+.++..
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            35789999999999999999888999999999999999999888653

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.84  E-value=0.00021  Score=58.76  Aligned_cols=134  Identities=13%  Similarity=0.216  Sum_probs=80.8

Q ss_pred             eEEEcCCccccCCHHHHHHHHHHHHH-HhcCCCCCCCeEEEEecccch----hHHHHhhcC-------CeEEEEeCCHHH
Q 043853           34 TFQISANSFFQTNTHQAEVLYKLIED-CAGLRDDGSEIVLDLFCGTGT----IGLTLARWV-------KHVYGYEVVPQA  101 (222)
Q Consensus        34 ~~~~~~~~f~~~~~~~~~~~~~~i~~-~~~~~~~~~~~vlDlg~G~G~----~~~~la~~~-------~~v~gvD~~~~~  101 (222)
                      .+.++.+.||.. +...+.+.+.+.. ++.......-+|+..||+||-    +++.+.+..       -+|+|+|+|..+
T Consensus        63 ~ltin~T~FFR~-~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~  141 (268)
T COG1352          63 ALTINVTEFFRD-PEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSV  141 (268)
T ss_pred             HhhhccchhccC-cHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHH
Confidence            345667788875 4444555555554 333222235699999999997    334443322       289999999999


Q ss_pred             HHHHHHHHHH-----cCC------------------------CcEEEEeCchhchhhhcCCCCCCCcEEEECCC----CC
Q 043853          102 ISDACRNAKL-----NNI------------------------SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RP  148 (222)
Q Consensus       102 i~~a~~n~~~-----~~~------------------------~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp----~~  148 (222)
                      ++.|+.-+-.     .++                        +.|.|...|+.+-.. .   .+.||+|+|=--    ..
T Consensus       142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~---~~~fD~IfCRNVLIYFd~  217 (268)
T COG1352         142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F---LGKFDLIFCRNVLIYFDE  217 (268)
T ss_pred             HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c---cCCCCEEEEcceEEeeCH
Confidence            9999753321     111                        125666666655432 1   147999988321    12


Q ss_pred             CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          149 GMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       149 ~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      ....++++.+.. |+++|++++-.+
T Consensus       218 ~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         218 ETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEccC
Confidence            234555555543 799999996653

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.80  E-value=6.7e-05  Score=59.34  Aligned_cols=136  Identities=18%  Similarity=0.112  Sum_probs=80.1

Q ss_pred             CCCeEEEEecccchhHHHH-hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTL-ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~l-a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ...+.||.|||.|.++-.+ .+.+.+|--+|..+..++.|++.+...+..-.++.+..+.++.+.    ..+||+|++..
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~----~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE----EGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC----CCcEeEEEehH
Confidence            4679999999999999855 567889999999999999999876442222268888888887653    24899998875


Q ss_pred             CCC-CccHHHHHHHHh----CCCCcEEEEeeC------------ccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCC
Q 043853          146 NRP-GMHMKLIKFLLK----LKAPRIVYVSCN------------PATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFP  208 (222)
Q Consensus       146 p~~-~~~~~~~~~l~~----l~~~~~v~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p  208 (222)
                      --. =...++++.+.+    |+|+|++++-.|            ..+..|..+.+.+-+    -+.|+++...+...-||
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF----~~AGl~~v~~~~Q~~fP  206 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELF----KQAGLRLVKEEKQKGFP  206 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHH----HHCT-EEEEEEE-TT--
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHH----HHcCCEEEEeccccCCC
Confidence            311 012445555443    788888876553            222222222221111    16789999988888888


Q ss_pred             CC
Q 043853          209 HT  210 (222)
Q Consensus       209 ~~  210 (222)
                      ..
T Consensus       207 ~~  208 (218)
T PF05891_consen  207 KE  208 (218)
T ss_dssp             TT
T ss_pred             cc
Confidence            74

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.77  E-value=0.00067  Score=57.29  Aligned_cols=130  Identities=16%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh----c--CCeEEEEeCCHHHHHHHHHHHHHcC
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR----W--VKHVYGYEVVPQAISDACRNAKLNN  113 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~----~--~~~v~gvD~~~~~i~~a~~n~~~~~  113 (222)
                      ..||+++.+ .+-+-+...+++..- +++..++|+|||+|.-+..+..    .  ....+++|+|..+++.+.+++....
T Consensus        51 pEYYptr~E-~~iL~~~~~~Ia~~i-~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~  128 (319)
T TIGR03439        51 PEYYLTNDE-IEILKKHSSDIAASI-PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN  128 (319)
T ss_pred             CccCChHHH-HHHHHHHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc
Confidence            367765433 222223333333222 2466899999999997553322    2  2379999999999999999998545


Q ss_pred             CCc--EEEEeCchhchhhhcCCC--CCCCcEEEEC------CCCCCccHHHHHHHHh--CCCCcEEEEeeC
Q 043853          114 ISN--ATFVQGDLNKIGGDFGNA--FPKPDIVISD------PNRPGMHMKLIKFLLK--LKAPRIVYVSCN  172 (222)
Q Consensus       114 ~~~--v~~~~~d~~~~~~~~~~~--~~~fD~ii~~------pp~~~~~~~~~~~l~~--l~~~~~v~~~~~  172 (222)
                      .+.  +.-+++|..+....+..+  .....+++.-      .++. ....++..++.  +++++.+.+..+
T Consensus       129 ~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~-ea~~fL~~~~~~~l~~~d~lLiG~D  198 (319)
T TIGR03439       129 FSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRP-EAAAFLAGFLATALSPSDSFLIGLD  198 (319)
T ss_pred             CCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHH-HHHHHHHHHHHhhCCCCCEEEEecC
Confidence            565  455899987764433211  1234444332      1211 12355555544  688888777553

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.0016  Score=52.16  Aligned_cols=156  Identities=21%  Similarity=0.209  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhc
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNK  126 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~  126 (222)
                      ....+...+ +...+.. ++..+||+|+-||+|+-.+.+. +.+|+|+|.....+.+--++     .++ +.+...|+..
T Consensus        63 G~~KL~~al-e~F~l~~-k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~  135 (245)
T COG1189          63 GGLKLEKAL-EEFELDV-KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRY  135 (245)
T ss_pred             HHHHHHHHH-HhcCcCC-CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhh
Confidence            444444433 3334433 5889999999999999977765 66999999987666554332     234 5566667766


Q ss_pred             hhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh-CCCCcEEEEeeC------------------c---cchHhhHHHhh
Q 043853          127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCN------------------P---ATCARDLDYLC  184 (222)
Q Consensus       127 ~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~~------------------~---~~~~~~~~~l~  184 (222)
                      +......  +..|++++|-..-.+ ..++..+.. +.+++.+..-.-                  +   ......+..++
T Consensus       136 l~~~~~~--~~~d~~v~DvSFISL-~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~  212 (245)
T COG1189         136 LTPEDFT--EKPDLIVIDVSFISL-KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFA  212 (245)
T ss_pred             CCHHHcc--cCCCeEEEEeehhhH-HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHH
Confidence            5443221  368899998764433 344444433 334333322221                  1   12222233333


Q ss_pred             ccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      .       +.||++..+.+-...-....+|-...+++
T Consensus       213 ~-------~~g~~~~gl~~Spi~G~~GNiE~l~~~~k  242 (245)
T COG1189         213 K-------ELGFQVKGLIKSPIKGGKGNIEFLLLLKK  242 (245)
T ss_pred             h-------hcCcEEeeeEccCccCCCCcEeeeeeeec
Confidence            2       56899988877665555556777666654

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.76  E-value=9.5e-05  Score=58.10  Aligned_cols=122  Identities=22%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCC--------
Q 043853           47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNI--------  114 (222)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~--------  114 (222)
                      -+++.++++........  ...-+++|.+||+|++.-.++-.    -..++|.|+|+.+++.|++|+.....        
T Consensus        33 VRLAsEi~qR~l~~l~~--~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~  110 (246)
T PF11599_consen   33 VRLASEIFQRALHYLEG--KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARRE  110 (246)
T ss_dssp             HHHHHHHHHHHHCTSSS---S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcC--CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence            45565555544444322  23568999999999988765532    24899999999999999999876531        


Q ss_pred             ------------------------------C----cEEEEeCchhchhhhcC-CCCCCCcEEEECCCC------CC--c-
Q 043853          115 ------------------------------S----NATFVQGDLNKIGGDFG-NAFPKPDIVISDPNR------PG--M-  150 (222)
Q Consensus       115 ------------------------------~----~v~~~~~d~~~~~~~~~-~~~~~fD~ii~~pp~------~~--~-  150 (222)
                                                    .    -..+.+.|+++...... ......|+|+.|.|+      .+  . 
T Consensus       111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~  190 (246)
T PF11599_consen  111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG  190 (246)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC
Confidence                                          1    14577778777432111 011247999999983      32  1 


Q ss_pred             --cHHHHHHHHh-CCCCcEEEEe
Q 043853          151 --HMKLIKFLLK-LKAPRIVYVS  170 (222)
Q Consensus       151 --~~~~~~~l~~-l~~~~~v~~~  170 (222)
                        ...+++.+.. +.+..++.++
T Consensus       191 ~p~~~ml~~l~~vLp~~sVV~v~  213 (246)
T PF11599_consen  191 GPVAQMLNSLAPVLPERSVVAVS  213 (246)
T ss_dssp             HHHHHHHHHHHCCS-TT-EEEEE
T ss_pred             CcHHHHHHHHHhhCCCCcEEEEe
Confidence              2355555555 4455566663

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.75  E-value=0.00011  Score=62.09  Aligned_cols=70  Identities=17%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .++.++||+||++|+++..+.+.+.+|+|||..+.. ..    +  ...++|+...+|...+...    ...+|++++|.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-~~----L--~~~~~V~h~~~d~fr~~p~----~~~vDwvVcDm  278 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-QS----L--MDTGQVEHLRADGFKFRPP----RKNVDWLVCDM  278 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-Hh----h--hCCCCEEEEeccCcccCCC----CCCCCEEEEec
Confidence            358899999999999999999888899999966422 11    1  1234699999998777542    25799999997


Q ss_pred             C
Q 043853          146 N  146 (222)
Q Consensus       146 p  146 (222)
                      -
T Consensus       279 v  279 (357)
T PRK11760        279 V  279 (357)
T ss_pred             c
Confidence            4

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.75  E-value=0.00015  Score=55.16  Aligned_cols=73  Identities=15%  Similarity=0.116  Sum_probs=50.8

Q ss_pred             EEEeCCHHHHHHHHHHHHHcC---CCcEEEEeCchhchhhhcCCCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCc
Q 043853           93 YGYEVVPQAISDACRNAKLNN---ISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPR  165 (222)
Q Consensus        93 ~gvD~~~~~i~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~  165 (222)
                      +|+|+|+.|++.|+++.+..+   ..+++++++|+.+++.    +.+.||+|++.--   ..+. ..+++.+ +.++|+|
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~v~~~~~l~~~~d~-~~~l~ei~rvLkpGG   75 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----DDCEFDAVTMGYGLRNVVDR-LRAMKEMYRVLKPGS   75 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----CCCCeeEEEecchhhcCCCH-HHHHHHHHHHcCcCe
Confidence            489999999999988765322   3469999999988754    2347999988642   1222 3444444 4589999


Q ss_pred             EEEEe
Q 043853          166 IVYVS  170 (222)
Q Consensus       166 ~v~~~  170 (222)
                      .+++.
T Consensus        76 ~l~i~   80 (160)
T PLN02232         76 RVSIL   80 (160)
T ss_pred             EEEEE
Confidence            88644

>PRK10458 DNA cytosine methylase; Provisional

Probab=97.74  E-value=0.0022  Score=56.86  Aligned_cols=77  Identities=18%  Similarity=0.176  Sum_probs=54.6

Q ss_pred             CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh-------------cCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD-------------FGN  133 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~-------------~~~  133 (222)
                      .-+++|++||.|++.+.+-..+ .-+.++|+++.+.+.-+.|...  .++...+.+|+.++...             +..
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~  165 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ  165 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhhhc
Confidence            4589999999999999887654 4678999999999988888531  12345556677665321             001


Q ss_pred             CCCCCcEEEECCC
Q 043853          134 AFPKPDIVISDPN  146 (222)
Q Consensus       134 ~~~~fD~ii~~pp  146 (222)
                      ..+.+|+++..||
T Consensus       166 ~~p~~DvL~gGpP  178 (467)
T PRK10458        166 HIPDHDVLLAGFP  178 (467)
T ss_pred             cCCCCCEEEEcCC
Confidence            1236899999998

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.72  E-value=0.00015  Score=60.29  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=78.2

Q ss_pred             eEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccch----hHHHHhhc------CCeEEEEeCCHHHHH
Q 043853           34 TFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGT----IGLTLARW------VKHVYGYEVVPQAIS  103 (222)
Q Consensus        34 ~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~----~~~~la~~------~~~v~gvD~~~~~i~  103 (222)
                      .+.++.+.||... ...+.+.+.+..    . .+.-+|+..||.||-    +++.+.+.      ..+|+|+|+|+.+++
T Consensus        88 ~ltineT~FFRd~-~~f~~L~~~~~~----~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~  161 (287)
T PRK10611         88 ALTTNLTAFFREA-HHFPILAEHARR----R-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLE  161 (287)
T ss_pred             HhhCCCCCccCCc-HHHHHHHHHHHh----c-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHH
Confidence            3456677888764 444444443321    1 124699999999997    33333332      137999999999999


Q ss_pred             HHHHHHHH-----------------------cC-------C-CcEEEEeCchhchhhhcCCCCCCCcEEEECC--C--CC
Q 043853          104 DACRNAKL-----------------------NN-------I-SNATFVQGDLNKIGGDFGNAFPKPDIVISDP--N--RP  148 (222)
Q Consensus       104 ~a~~n~~~-----------------------~~-------~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p--p--~~  148 (222)
                      .|++-+-.                       .+       + ..|+|.+.|+.+.....   .+.||+|+|--  .  ..
T Consensus       162 ~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~---~~~fD~I~cRNvliyF~~  238 (287)
T PRK10611        162 KARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAV---PGPFDAIFCRNVMIYFDK  238 (287)
T ss_pred             HHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCcc---CCCcceeeHhhHHhcCCH
Confidence            99876311                       01       1 13788888887632211   24799998821  1  11


Q ss_pred             CccHHHHHHHHh-CCCCcEEEEee
Q 043853          149 GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       149 ~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .....+++.+.. ++|+|++++..
T Consensus       239 ~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        239 TTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEeC
Confidence            223455555543 89999887654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.64  E-value=9.2e-05  Score=58.21  Aligned_cols=127  Identities=17%  Similarity=0.256  Sum_probs=65.8

Q ss_pred             CccccCCHHHHHHHHHHHH-HHhc-CCCCCCCeEEEEecccch----hHHHHhh----cCC---eEEEEeCCHHHHHHHH
Q 043853           40 NSFFQTNTHQAEVLYKLIE-DCAG-LRDDGSEIVLDLFCGTGT----IGLTLAR----WVK---HVYGYEVVPQAISDAC  106 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~-~~~~-~~~~~~~~vlDlg~G~G~----~~~~la~----~~~---~v~gvD~~~~~i~~a~  106 (222)
                      +.||.. +...+.+.+.+. .++. ......-+|+..||++|-    +++.+.+    ...   +|+|+|+|+.+++.|+
T Consensus         3 T~FFRd-~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar   81 (196)
T PF01739_consen    3 TYFFRD-PEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR   81 (196)
T ss_dssp             --TTTT-TTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred             CcccCC-HHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence            456654 445555555555 3332 122245799999999997    3333333    122   8999999999999986


Q ss_pred             HHHH--------------H-c----C----C-----CcEEEEeCchhchhhhcCCCCCCCcEEEECCC----CCCccHHH
Q 043853          107 RNAK--------------L-N----N----I-----SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKL  154 (222)
Q Consensus       107 ~n~~--------------~-~----~----~-----~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~  154 (222)
                      +-+-              . .    +    +     +.|+|.+.|+.+...    ..+.||+|+|---    .......+
T Consensus        82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~----~~~~fD~I~CRNVlIYF~~~~~~~v  157 (196)
T PF01739_consen   82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP----PFGRFDLIFCRNVLIYFDPETQQRV  157 (196)
T ss_dssp             HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGGS-HHHHHHH
T ss_pred             hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCc----ccCCccEEEecCEEEEeCHHHHHHH
Confidence            5320              0 0    1    0     248888888888211    2258999999432    11223455


Q ss_pred             HHHHHh-CCCCcEEEEee
Q 043853          155 IKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       155 ~~~l~~-l~~~~~v~~~~  171 (222)
                      ++.+.. |+|+|.+++..
T Consensus       158 l~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  158 LRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             HHHHGGGEEEEEEEEE-T
T ss_pred             HHHHHHHcCCCCEEEEec
Confidence            555544 78999998664

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.55  E-value=0.00016  Score=55.98  Aligned_cols=68  Identities=26%  Similarity=0.310  Sum_probs=47.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++.++||+||+.|+++..+.+..   ..++|+|+.+.           ...+++..+++|..+...      .+......
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence            46899999999999999888876   59999999977           223457777877654311      11111248


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      +|+|++|.
T Consensus        92 ~dlv~~D~   99 (181)
T PF01728_consen   92 FDLVLSDM   99 (181)
T ss_dssp             ESEEEE--
T ss_pred             cceecccc
Confidence            99999997

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PHA01634 hypothetical protein

Probab=97.51  E-value=0.00055  Score=49.47  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             CCCeEEEEecccchhHHHHh-hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la-~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .+++|+|+|++.|.-++.++ +++..|+++|.++...+..++|++.+.+=+--+...+   +.    +.-++||+...|=
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~e---W~----~~Y~~~Di~~iDC  100 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGE---WN----GEYEDVDIFVMDC  100 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeeccc---cc----ccCCCcceEEEEc
Confidence            47899999999999999665 4566999999999999999999998755221111222   22    1235799988764

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.45  E-value=0.003  Score=52.30  Aligned_cols=109  Identities=21%  Similarity=0.169  Sum_probs=61.5

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ..+|||+|||.|.-+.++...   ..+++++|.|+.|++.++..++............+...-..    +....|+|++.
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~DLvi~s  109 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL----PFPPDDLVIAS  109 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc----cCCCCcEEEEe
Confidence            579999999999877666543   34899999999999999997764322111111111111001    11245998776


Q ss_pred             CCCC----CccHHHHHHHHhCCCCcEEEEeeCccchHhhH
Q 043853          145 PNRP----GMHMKLIKFLLKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       145 pp~~----~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                      ---.    .....+++.+-....+.+|+++-....-.+.+
T Consensus       110 ~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i  149 (274)
T PF09243_consen  110 YVLNELPSAARAELVRSLWNKTAPVLVLVEPGTPAGFRRI  149 (274)
T ss_pred             hhhhcCCchHHHHHHHHHHHhccCcEEEEcCCChHHHHHH
Confidence            4211    22344445553334446666666543333333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.41  E-value=0.0029  Score=46.82  Aligned_cols=109  Identities=13%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC---CCCC---------ccHHHHHH
Q 043853           91 HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP---NRPG---------MHMKLIKF  157 (222)
Q Consensus        91 ~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p---p~~~---------~~~~~~~~  157 (222)
                      +|+|+|+.+.+++.+++.++..+..+ +++++.+-..+......  +++|.++.|.   |..+         ....+...
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~--~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE--GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S----EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc--CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            58999999999999999999998865 99999988777654432  3799999985   4111         11233334


Q ss_pred             HHhCCCCcEEEEeeCc-----cchHhhHHHhhccCCCCccCCCeEEeEeeeec
Q 043853          158 LLKLKAPRIVYVSCNP-----ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVD  205 (222)
Q Consensus       158 l~~l~~~~~v~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  205 (222)
                      +..++++|++.+.+.+     ......+..++....    ...|.+......+
T Consensus        79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~----~~~~~V~~~~~~N  127 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD----QKEFNVLKYQFIN  127 (140)
T ss_dssp             HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-----TTTEEEEEEEESS
T ss_pred             HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC----cceEEEEEEEccC
Confidence            4558999998877743     223333444443221    4589988877765

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=97.35  E-value=0.00057  Score=56.81  Aligned_cols=117  Identities=19%  Similarity=0.121  Sum_probs=79.2

Q ss_pred             eecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCe---EEEEecccchhHHHHhh--cCCeEEEEeCCHHHHH
Q 043853           29 TLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEI---VLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAIS  103 (222)
Q Consensus        29 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~---vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~  103 (222)
                      +.+|+...|+++...+. -+....++.|+.+++.....+..+   -+|||.|+-.+--.+..  ......++|++...+.
T Consensus        62 ~Dfgl~veiP~grLcPt-VPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~  140 (419)
T KOG2912|consen   62 EDFGLSVEIPLGRLCPT-VPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFN  140 (419)
T ss_pred             hccCceEecCccccCCC-CccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccc
Confidence            44678888888888875 456667789999988644322223   36888776665444432  2458899999999999


Q ss_pred             HHHHHHHHcCCCc-EEEEeCchhch-hhh-cC-CCCCCCcEEEECCC
Q 043853          104 DACRNAKLNNISN-ATFVQGDLNKI-GGD-FG-NAFPKPDIVISDPN  146 (222)
Q Consensus       104 ~a~~n~~~~~~~~-v~~~~~d~~~~-~~~-~~-~~~~~fD~ii~~pp  146 (222)
                      .|++|+.+++++. +.+++.+..+. ... +. .+...||.+.||||
T Consensus       141 ~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPP  187 (419)
T KOG2912|consen  141 YAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPP  187 (419)
T ss_pred             hhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCc
Confidence            9999999999875 66665533221 111 11 11235999999998

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.28  E-value=0.0094  Score=49.25  Aligned_cols=99  Identities=18%  Similarity=0.152  Sum_probs=59.1

Q ss_pred             CCeEEEEecccchhHH-HHhhc---CCeEEEEeCCHHHHHHHHHHHH-HcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGL-TLARW---VKHVYGYEVVPQAISDACRNAK-LNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~-~la~~---~~~v~gvD~~~~~i~~a~~n~~-~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      ..+|+=+|||.=-++. .+++.   +..++++|+|+.+++.+++.++ ..++++ +.++.+|..+....+    ..||+|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl----~~~DvV  196 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL----KEYDVV  196 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG--------SEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc----ccCCEE
Confidence            3599999999666555 66653   3479999999999999999888 456554 999999998765433    379999


Q ss_pred             EECCC---CCCccHHHHHHHHh-CCCCcEEEEe
Q 043853          142 ISDPN---RPGMHMKLIKFLLK-LKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp---~~~~~~~~~~~l~~-l~~~~~v~~~  170 (222)
                      +...-   ......++++.+.. +++|..+.+=
T Consensus       197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             EE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             EEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            88652   22345778887755 6777766544

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.0017  Score=48.20  Aligned_cols=98  Identities=22%  Similarity=0.207  Sum_probs=68.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+.+|+|+|-|.+.++.++.+ .+.+|+|++|..+.+++-..-..++.+ ..|..-|+..+...    +=++-+||.-
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~----dy~~vviFga  147 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR----DYRNVVIFGA  147 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc----ccceEEEeeh
Confidence            35689999999999999988866 589999999999999998887778765 88999998776432    0122233333


Q ss_pred             CCCCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          145 PNRPGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       145 pp~~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      +   .+.+.+.+.++. +..+. -+++|.
T Consensus       148 e---s~m~dLe~KL~~E~p~nt-~vvacR  172 (199)
T KOG4058|consen  148 E---SVMPDLEDKLRTELPANT-RVVACR  172 (199)
T ss_pred             H---HHHhhhHHHHHhhCcCCC-eEEEEe
Confidence            2   334555566653 44333 334553

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.23  E-value=0.001  Score=58.58  Aligned_cols=132  Identities=16%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             eeecCeeEEEcCC--ccccCCHHHHHHHHHHHHHHhcC--CCCCCCeEEEEecccchhHHHHhhcCCeEEEE---eCCHH
Q 043853           28 ETLRGLTFQISAN--SFFQTNTHQAEVLYKLIEDCAGL--RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGY---EVVPQ  100 (222)
Q Consensus        28 ~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~i~~~~~~--~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gv---D~~~~  100 (222)
                      ....|..|.|+-+  .|..    .+...++.+.+.+..  ....-..+||+|||+|+|+..+...+-.+.++   |..+.
T Consensus        78 v~~~gd~~~FPgggt~F~~----Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~  153 (506)
T PF03141_consen   78 VRVEGDKFRFPGGGTMFPH----GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA  153 (506)
T ss_pred             eeecCCEEEeCCCCccccC----CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence            3345667777754  3332    344455666666654  33334679999999999999988765543333   55566


Q ss_pred             HHHHHHHHHHHcCCCcEEEEeCc--hhchhhhcCCCCCCCcEEEECC---CCCCc-cHHHHHHHHhCCCCcEEEEeeCcc
Q 043853          101 AISDACRNAKLNNISNATFVQGD--LNKIGGDFGNAFPKPDIVISDP---NRPGM-HMKLIKFLLKLKAPRIVYVSCNPA  174 (222)
Q Consensus       101 ~i~~a~~n~~~~~~~~v~~~~~d--~~~~~~~~~~~~~~fD~ii~~p---p~~~~-~~~~~~~l~~l~~~~~v~~~~~~~  174 (222)
                      .++.|.+.    |++   ...+-  ...++.    +.+.||+|=|.-   |+... ..-+.+.=+.|+|||+.+.|..|.
T Consensus       154 qvqfaleR----Gvp---a~~~~~~s~rLPf----p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  154 QVQFALER----GVP---AMIGVLGSQRLPF----PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hhhhhhhc----Ccc---hhhhhhccccccC----CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            66666542    443   22222  122322    345899984432   22111 123333334479999988887653

; GO: 0008168 methyltransferase activity

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.22  E-value=0.00056  Score=57.29  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=56.6

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC--CCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN--AFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~fD~ii  142 (222)
                      ++..++|..-|.|+.+.++.+.  ..+++|+|.||.+++.|++++... -+++.+++++..++...+..  ....+|.|+
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL   98 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL   98 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence            4779999999999999988864  359999999999999999887644 23599999998877654332  224799998


Q ss_pred             ECC
Q 043853          143 SDP  145 (222)
Q Consensus       143 ~~p  145 (222)
                      .|.
T Consensus        99 ~DL  101 (310)
T PF01795_consen   99 FDL  101 (310)
T ss_dssp             EE-
T ss_pred             Ecc
Confidence            875

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.21  E-value=0.0011  Score=57.32  Aligned_cols=60  Identities=22%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhch
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKI  127 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~  127 (222)
                      ...|||+|+|||.+++.+++.+ -.++++|.=..|.+.|++.+.+||.++ ++++..-..+.
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev  128 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV  128 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence            4579999999999999777654 489999999999999999999999875 88877655554

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.014  Score=46.04  Aligned_cols=69  Identities=22%  Similarity=0.311  Sum_probs=49.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh--hcCC--CCCCCc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG--DFGN--AFPKPD  139 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~--~~~~fD  139 (222)
                      ++..|+||||-.|+++..+++...   .|+|+|+.|.-.           .++|.++++|+++-..  .+..  ...++|
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D  113 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAPVD  113 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence            589999999999999998887543   599999987521           3468999999855421  1110  113579


Q ss_pred             EEEECCC
Q 043853          140 IVISDPN  146 (222)
Q Consensus       140 ~ii~~pp  146 (222)
                      +|++|+.
T Consensus       114 vV~sD~a  120 (205)
T COG0293         114 VVLSDMA  120 (205)
T ss_pred             eEEecCC
Confidence            9999974

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.14  E-value=0.0048  Score=51.18  Aligned_cols=88  Identities=19%  Similarity=0.222  Sum_probs=66.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  131 (222)
                      +-+.+.+...  ++...+|..-|.|+.+-.+....   ..++|+|.||.+++.|++....++ +++.+++++..++...+
T Consensus        13 ~E~i~~L~~~--~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l   89 (314)
T COG0275          13 NEVVELLAPK--PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEAL   89 (314)
T ss_pred             HHHHHhcccC--CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHH
Confidence            3344444433  36899999999999999887654   479999999999999999998766 46999999987776543


Q ss_pred             CCC-CCCCcEEEECC
Q 043853          132 GNA-FPKPDIVISDP  145 (222)
Q Consensus       132 ~~~-~~~fD~ii~~p  145 (222)
                      ... ...+|-|+.|.
T Consensus        90 ~~~~i~~vDGiL~DL  104 (314)
T COG0275          90 KELGIGKVDGILLDL  104 (314)
T ss_pred             HhcCCCceeEEEEec
Confidence            321 24678887653

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.0013  Score=49.62  Aligned_cols=125  Identities=14%  Similarity=0.089  Sum_probs=74.6

Q ss_pred             CCeEEEEecc-cchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCC---cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           68 SEIVLDLFCG-TGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS---NATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G-~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      +.+|+|+|.| +|.-++.+|...+  .|.-.|-+.+.++..++....|..+   .+.+...+...-....  ....||+|
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~--eq~tFDiI  107 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ--EQHTFDII  107 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH--hhCcccEE
Confidence            5789999999 6666667776544  8999999999999999888776433   3433333332221111  22489999


Q ss_pred             EECC--CCCCccHHHHHHHHh-CCCCcEEEEee--CccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853          142 ISDP--NRPGMHMKLIKFLLK-LKAPRIVYVSC--NPATCARDLDYLCHGVGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       142 i~~p--p~~~~~~~~~~~l~~-l~~~~~v~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  202 (222)
                      ++.-  ........+.+.|.. ++|.|...+.+  ...+.........        +.||.+.-..
T Consensus       108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~--------~~gf~v~l~e  165 (201)
T KOG3201|consen  108 LAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVG--------TVGFTVCLEE  165 (201)
T ss_pred             EeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHH--------hceeEEEecc
Confidence            8853  123344556666655 57766554444  2334444443332        4456555443

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=97.01  E-value=0.064  Score=48.34  Aligned_cols=79  Identities=23%  Similarity=0.298  Sum_probs=56.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc------CCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW------VKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKP  138 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~------~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~f  138 (222)
                      ++..+.|+.||+|++.+...+.      ...++|.+..+.+...++.|+..++..  ......+|...-+.. . ...+|
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~-~~~~~  294 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW-E-NENGF  294 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc-c-ccccC
Confidence            4578999999999998854431      136999999999999999998877653  244545554332211 1 12469


Q ss_pred             cEEEECCCC
Q 043853          139 DIVISDPNR  147 (222)
Q Consensus       139 D~ii~~pp~  147 (222)
                      |++++|||.
T Consensus       295 D~v~~NpPf  303 (501)
T TIGR00497       295 EVVVSNPPY  303 (501)
T ss_pred             CEEeecCCc
Confidence            999999983

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.00  E-value=0.0033  Score=50.91  Aligned_cols=71  Identities=15%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ...+|+|+|||.=-+++......  ..++|+|+|..+++....-....+.+ .++...|...-...     ...|+.+.
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~~~~~-----~~~DlaLl  177 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLSDPPK-----EPADLALL  177 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTTSHTT-----SEESEEEE
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeeccCCC-----CCcchhhH
Confidence            36799999999999999665543  49999999999999999999988874 77777787665332     35788765

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.00  E-value=0.015  Score=42.08  Aligned_cols=99  Identities=28%  Similarity=0.205  Sum_probs=58.8

Q ss_pred             EEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           71 VLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        71 vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++|+|||+|... .++...   ..++|+|.++.++..++..... .... +.+..+|.......+.. ...||++.....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFED-SASFDLVISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCC-CCceeEEeeeee
Confidence            999999999976 333332   3889999999999996655533 2212 67888887652111110 026899844332


Q ss_pred             CCCc-cHHHHHHH-HhCCCCcEEEEeeC
Q 043853          147 RPGM-HMKLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       147 ~~~~-~~~~~~~l-~~l~~~~~v~~~~~  172 (222)
                      .... .......+ ..+++++.+++...
T Consensus       129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         129 LHLLPPAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             hhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            1111 23344443 44678777765553

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.99  E-value=0.0028  Score=50.54  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             CCeEEEEecccchhHHHHh-hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           68 SEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la-~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      .+.++|+|||.|.+.-.+. +...+++-+|.|-.|++.++.. +.+++ .+....+|-+.++..    .+.+|+|+++..
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~----ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFK----ENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhccccc----ccchhhhhhhhh
Confidence            5689999999999998765 4567999999999999998763 22223 256667776655532    258999988764


Q ss_pred             --C-CCccHHHHHHHHhCCCCcEEE
Q 043853          147 --R-PGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       147 --~-~~~~~~~~~~l~~l~~~~~v~  168 (222)
                        + ..+...+++.-..++|.+..+
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~Fi  171 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFI  171 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccch
Confidence              2 234444444444567777655

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.97  E-value=0.0062  Score=48.03  Aligned_cols=111  Identities=15%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      +...|.|+|||.+.++..+. ..-+|+..|+-+.               +-.++.+|+...+..    ++..|++++...
T Consensus        72 ~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~---------------n~~Vtacdia~vPL~----~~svDv~VfcLS  131 (219)
T PF05148_consen   72 KSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP---------------NPRVTACDIANVPLE----DESVDVAVFCLS  131 (219)
T ss_dssp             TTS-EEEES-TT-HHHHH---S---EEEEESS-S---------------STTEEES-TTS-S------TT-EEEEEEES-
T ss_pred             CCEEEEECCCchHHHHHhcc-cCceEEEeeccCC---------------CCCEEEecCccCcCC----CCceeEEEEEhh
Confidence            35799999999999996654 2347999998742               124677888776642    357999988775


Q ss_pred             --CCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853          147 --RPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       147 --~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  202 (222)
                        -.++..-+.++.+-|+++|.+++..-... ..+.+.|.+.+.    ..||++....
T Consensus       132 LMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR-f~~~~~F~~~~~----~~GF~~~~~d  184 (219)
T PF05148_consen  132 LMGTNWPDFIREANRVLKPGGILKIAEVKSR-FENVKQFIKALK----KLGFKLKSKD  184 (219)
T ss_dssp             --SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--S-HHHHHHHHH----CTTEEEEEEE
T ss_pred             hhCCCcHHHHHHHHheeccCcEEEEEEeccc-CcCHHHHHHHHH----HCCCeEEecc
Confidence              22333444445555899999886652211 113332222111    4578777643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.97  E-value=0.0033  Score=50.99  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=58.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ....|.|+|||-+-++.   ....+|++.|+-+.               +-+++.+|+...+..    ++..|++++...
T Consensus       180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~----d~svDvaV~CLS  237 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVAV---------------NERVIACDMRNVPLE----DESVDVAVFCLS  237 (325)
T ss_pred             CceEEEecccchhhhhh---ccccceeeeeeecC---------------CCceeeccccCCcCc----cCcccEEEeeHh
Confidence            46789999999998876   33458999998632               357888898886653    458999988765


Q ss_pred             C--CCccHHHHHH-HHhCCCCcEEEEee
Q 043853          147 R--PGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       147 ~--~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      .  .++ ..++.. -+-|+++|.+|+..
T Consensus       238 LMgtn~-~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  238 LMGTNL-ADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             hhcccH-HHHHHHHHHHhccCceEEEEe
Confidence            2  233 334443 34489999999775

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.78  E-value=0.0016  Score=45.61  Aligned_cols=61  Identities=20%  Similarity=0.177  Sum_probs=42.9

Q ss_pred             EcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCH
Q 043853           37 ISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP   99 (222)
Q Consensus        37 ~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~   99 (222)
                      .+|..+.......+..++.+.......  .+...++|+|||.|.+..-|...+-+-.|+|.-.
T Consensus        30 TdP~K~VfEDlaIAAyLi~LW~~~~~~--~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   30 TDPQKHVFEDLAIAAYLIELWRDMYGE--QKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CCchhhHHHHHHHHHHHHHHHhcccCC--CCCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            455555555555666666655554332  2356899999999999998888787888998753

; GO: 0008168 methyltransferase activity

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.023  Score=48.40  Aligned_cols=81  Identities=19%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC------CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc-----CCC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV------KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF-----GNA  134 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~------~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~-----~~~  134 (222)
                      .++.+|||+++-.|+-++.+.+..      +.+++-|.++.-+....+.++....+++.+...|+..++...     ...
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~  233 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE  233 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence            468999999999999988665531      289999999999999988886666556777777776665432     112


Q ss_pred             CCCCcEEEECCC
Q 043853          135 FPKPDIVISDPN  146 (222)
Q Consensus       135 ~~~fD~ii~~pp  146 (222)
                      ...||-|++|-|
T Consensus       234 ~~~fDrVLvDVP  245 (375)
T KOG2198|consen  234 QLKFDRVLVDVP  245 (375)
T ss_pred             hhhcceeEEecc
Confidence            247999999988

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.60  E-value=0.011  Score=48.49  Aligned_cols=104  Identities=15%  Similarity=0.059  Sum_probs=70.7

Q ss_pred             CCCeEEEEecccchhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .++.|+=+| ---..+++++.  ...++..+|++...++...+.++..|+.|++.+.-|+....+.-..  .+||+++.|
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~--~kFDvfiTD  228 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK--RKFDVFITD  228 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHH--hhCCeeecC
Confidence            356677777 44455565554  4559999999999999999999999998899999999776543221  489999999


Q ss_pred             CCCC--CccHHHHHHHHhCCCC---cEEEEeeCc
Q 043853          145 PNRP--GMHMKLIKFLLKLKAP---RIVYVSCNP  173 (222)
Q Consensus       145 pp~~--~~~~~~~~~l~~l~~~---~~v~~~~~~  173 (222)
                      ||..  ++..-+-+-+..|+..   |+.+++...
T Consensus       229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~re  262 (354)
T COG1568         229 PPETIKALKLFLGRGIATLKGEGCAGYFGITRRE  262 (354)
T ss_pred             chhhHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence            9943  1111111123335543   666666643

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=96.43  E-value=0.05  Score=41.61  Aligned_cols=128  Identities=18%  Similarity=0.137  Sum_probs=75.3

Q ss_pred             EecccchhHHHHhhcC---CeEEEE--eCCHHHHHH---HHHHHHHcCCCcEEE-EeCchhchhhhcCCCCCCCcEEEEC
Q 043853           74 LFCGTGTIGLTLARWV---KHVYGY--EVVPQAISD---ACRNAKLNNISNATF-VQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        74 lg~G~G~~~~~la~~~---~~v~gv--D~~~~~i~~---a~~n~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +|=|.=.+++++++..   .++++.  |...+..+.   +..|+....-.++.+ ...|+.++..........||.|+.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            4445555666777643   266655  444444333   346666653334444 4458888876653344689999999


Q ss_pred             CCCCC---------------ccHHHHHHHHh-CCCCcEEEEeeCccc--hHhhHHHhhccCCCCccCCCeEEeEeeeec-
Q 043853          145 PNRPG---------------MHMKLIKFLLK-LKAPRIVYVSCNPAT--CARDLDYLCHGVGDQNIKGCYKLKSLQPVD-  205 (222)
Q Consensus       145 pp~~~---------------~~~~~~~~l~~-l~~~~~v~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-  205 (222)
                      .|..+               +...+...... +.++|.+.++-....  ...++..+++       ..|+.+....+++ 
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~-------~~gl~l~~~~~F~~  155 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAA-------EAGLVLVRKVPFDP  155 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHH-------hcCCEEEEEecCCH
Confidence            99665               11122222222 677777776664322  3456677765       7799999988876 


Q ss_pred             -cCC
Q 043853          206 -MFP  208 (222)
Q Consensus       206 -~~p  208 (222)
                       .||
T Consensus       156 ~~yp  159 (166)
T PF10354_consen  156 SDYP  159 (166)
T ss_pred             HHCC
Confidence             355

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.39  E-value=0.035  Score=44.77  Aligned_cols=102  Identities=20%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC-C--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV-K--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~-~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+||=||+++|+...+.+.-. +  -|+++|.|+..=.....-++  +-+|+-.+..|+.-.. .+.---...|+||
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--kRtNiiPIiEDArhP~-KYRmlVgmVDvIF  231 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--KRTNIIPIIEDARHPA-KYRMLVGMVDVIF  231 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--ccCCceeeeccCCCch-heeeeeeeEEEEe
Confidence            458999999999999888887742 2  79999998654333322111  1247777778875432 1110113689999


Q ss_pred             ECCCCCCccHHHHH--HHHhCCCCcEEEEee
Q 043853          143 SDPNRPGMHMKLIK--FLLKLKAPRIVYVSC  171 (222)
Q Consensus       143 ~~pp~~~~~~~~~~--~l~~l~~~~~v~~~~  171 (222)
                      +|.+.++. ..++.  +-.-|++++.+.++.
T Consensus       232 aDvaqpdq-~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  232 ADVAQPDQ-ARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             ccCCCchh-hhhhhhhhhhhhccCCeEEEEE
Confidence            99764332 12111  111267777665444

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=96.33  E-value=0.18  Score=39.98  Aligned_cols=112  Identities=17%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccch--hHHHH--hh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCch-hc
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGT--IGLTL--AR--WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDL-NK  126 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~--~~~~l--a~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~-~~  126 (222)
                      ++|..++.  +-+.+.+++..|+.|.  .+++|  |.  -+.++++|.-++......++.+...+.++ ++|+.++. .+
T Consensus        31 EfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~  108 (218)
T PF07279_consen   31 EFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE  108 (218)
T ss_pred             HHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH
Confidence            44444432  2246789999877543  33433  32  25699999999888888888888888766 79999984 55


Q ss_pred             hhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       127 ~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      ....+    ...|+++.|--..+...++++.++ +.+.|-+.+..|.
T Consensus       109 ~~~~~----~~iDF~vVDc~~~d~~~~vl~~~~-~~~~GaVVV~~Na  150 (218)
T PF07279_consen  109 VMPGL----KGIDFVVVDCKREDFAARVLRAAK-LSPRGAVVVCYNA  150 (218)
T ss_pred             HHhhc----cCCCEEEEeCCchhHHHHHHHHhc-cCCCceEEEEecc
Confidence            55544    368999998654444335555543 5667777766654

The function of this family is unknown.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.22  E-value=0.032  Score=39.52  Aligned_cols=100  Identities=16%  Similarity=0.116  Sum_probs=63.3

Q ss_pred             cccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc
Q 043853           76 CGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH  151 (222)
Q Consensus        76 ~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~  151 (222)
                      ||.|.++..+++    .+.+++.+|.+++.++.+++.       .+.++.+|..+...-........+.+++..+.....
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n   76 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN   76 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence            677777776654    234899999999998888753       367999999776422222234688887776544333


Q ss_pred             HHHHHHHHhCCCCcEEEEeeCccchHhhHHH
Q 043853          152 MKLIKFLLKLKAPRIVYVSCNPATCARDLDY  182 (222)
Q Consensus       152 ~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~  182 (222)
                      ..+...++.+.+...++...+.......++.
T Consensus        77 ~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~  107 (116)
T PF02254_consen   77 LLIALLARELNPDIRIIARVNDPENAELLRQ  107 (116)
T ss_dssp             HHHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence            4445556667777777766666444444443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.16  E-value=0.088  Score=43.12  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=64.6

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------------------
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNI-------------------  114 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-------------------  114 (222)
                      +.+.+........+.++||+|||.-..-+ .+.+...+|+..|..+..++..++.++.-+.                   
T Consensus        44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~  123 (256)
T PF01234_consen   44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREK  123 (256)
T ss_dssp             HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSG
T ss_pred             HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcch
Confidence            33434333333357799999999866544 4445677999999999999888777654331                   


Q ss_pred             ---------CcE-EEEeCchhchhhhcC-CCC-CCCcEEEECCC------CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          115 ---------SNA-TFVQGDLNKIGGDFG-NAF-PKPDIVISDPN------RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       115 ---------~~v-~~~~~d~~~~~~~~~-~~~-~~fD~ii~~pp------~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                               ..| +++..|+.+...-.. ... .+||+|++..-      ........++.+ ..++|||.+++..
T Consensus       124 ~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  124 WEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             HHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                     013 477778866542211 011 25999977642      111222333333 3378998876544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.01  E-value=0.074  Score=43.26  Aligned_cols=104  Identities=18%  Similarity=0.145  Sum_probs=60.3

Q ss_pred             CCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcC-----CC-cEEEEeCchhchhhhcCCCCCC-Cc
Q 043853           68 SEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNN-----IS-NATFVQGDLNKIGGDFGNAFPK-PD  139 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~-----~~-~v~~~~~d~~~~~~~~~~~~~~-fD  139 (222)
                      ..+||++|+|+|..++.+|.. ..++.-.|. +..+...+.|...++     .. .+.+...++......-... +. +|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~-~~~~D  164 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL-PNPFD  164 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc-CCccc
Confidence            567999999999999988874 557777776 455555555544332     22 2444444443332111111 23 89


Q ss_pred             EEEECCC--CCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          140 IVISDPN--RPGMHMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       140 ~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                      +|+..-+  .......+...+.. +..++++++...-
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l  201 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL  201 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence            9877543  23445666666655 3444477766643

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.00  E-value=0.13  Score=42.18  Aligned_cols=104  Identities=15%  Similarity=0.052  Sum_probs=56.9

Q ss_pred             CCeEEEEeccc--chhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC--------C
Q 043853           68 SEIVLDLFCGT--GTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN--------A  134 (222)
Q Consensus        68 ~~~vlDlg~G~--G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~--------~  134 (222)
                      -..+||+|||.  -...-.+|+.   ..+|+-+|.+|..+..++..+..+.-....++++|+.+...-+..        .
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            46899999993  3455566654   348999999999999999888655322389999999776432221        1


Q ss_pred             CCCCcEEEECC----CCCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          135 FPKPDIVISDP----NRPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       135 ~~~fD~ii~~p----p~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..+.-+++...    |...-...++..+.. +.+|..+.++-
T Consensus       149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence            11222333321    222334566666655 78898887765

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.87  E-value=0.032  Score=48.05  Aligned_cols=100  Identities=22%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++..++|+|||.|.....++.. ..+++|++.++..+..+........+++ ..+...|....+..    ++.||.+-+.
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe----dn~fd~v~~l  185 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE----DNTFDGVRFL  185 (364)
T ss_pred             ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC----ccccCcEEEE
Confidence            4668999999999999988875 4699999999998888888777777765 56677777666542    3578887543


Q ss_pred             CC---CCCccHHHHHHHHhCCCCcEEEEe
Q 043853          145 PN---RPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       145 pp---~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      --   .........+..+.++|+|+....
T Consensus       186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence            21   122333444444557888876643

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.68  E-value=0.045  Score=45.54  Aligned_cols=47  Identities=28%  Similarity=0.441  Sum_probs=43.0

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN  112 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~  112 (222)
                      .++..|+|.++|+|..+++..+.+...+|+|++++.++.+.+.+...
T Consensus       221 ~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         221 FPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            35899999999999999999888999999999999999999988754

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=95.44  E-value=0.82  Score=37.15  Aligned_cols=87  Identities=15%  Similarity=0.087  Sum_probs=65.7

Q ss_pred             EEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC--C
Q 043853           72 LDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP--G  149 (222)
Q Consensus        72 lDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~--~  149 (222)
                      |..+|||=.++-.+.+..-++.++|+.|.-....+.|+.  +..++++.++|..........+.++=-+|++|||..  +
T Consensus        93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~  170 (279)
T COG2961          93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKD  170 (279)
T ss_pred             cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccccc
Confidence            899999998888887766799999999999999999987  445699999998776543333334567899999943  3


Q ss_pred             ccHHHHHHHHh
Q 043853          150 MHMKLIKFLLK  160 (222)
Q Consensus       150 ~~~~~~~~l~~  160 (222)
                      -...+.+.+..
T Consensus       171 eY~rvv~~l~~  181 (279)
T COG2961         171 EYQRVVEALAE  181 (279)
T ss_pred             HHHHHHHHHHH
Confidence            34555555543

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=95.35  E-value=0.12  Score=42.88  Aligned_cols=106  Identities=16%  Similarity=0.132  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEeCchhchhhhcCCCCCCC
Q 043853           65 DDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN--NI--SNATFVQGDLNKIGGDFGNAFPKP  138 (222)
Q Consensus        65 ~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~f  138 (222)
                      .++.++++=+|-|-|++.-..+++  ..++.-+|++...++..++-....  +.  +++.++-||...+.....  .++|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~--~~~~  196 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK--ENPF  196 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc--cCCc
Confidence            346789999999999998866665  348999999999999998888765  33  359999999999887653  2589


Q ss_pred             cEEEECCCC------CCccHHHHH-HHHhCCCCcEEEEeeC
Q 043853          139 DIVISDPNR------PGMHMKLIK-FLLKLKAPRIVYVSCN  172 (222)
Q Consensus       139 D~ii~~pp~------~~~~~~~~~-~l~~l~~~~~v~~~~~  172 (222)
                      |+|+.+...      .-....... .+.++++++++.....
T Consensus       197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e  237 (337)
T KOG1562|consen  197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE  237 (337)
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence            999987631      111223333 3345889998876553

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.18  E-value=0.35  Score=38.49  Aligned_cols=102  Identities=14%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+||++|=|.|.....+.+..+ +-+-||.+|..++..+++.-... +||.+..+-+.+...++..  +.||-|+.|-
T Consensus       101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d--~~FDGI~yDT  177 (271)
T KOG1709|consen  101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPD--KHFDGIYYDT  177 (271)
T ss_pred             CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccc--cCcceeEeec
Confidence            478999999999999988877654 55667999999999888764322 3699999999888877653  4699999985


Q ss_pred             C--CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          146 N--RPGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       146 p--~~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      -  ...-...+.+.+-+ ++|+|+ +.-||
T Consensus       178 y~e~yEdl~~~hqh~~rLLkP~gv-~SyfN  206 (271)
T KOG1709|consen  178 YSELYEDLRHFHQHVVRLLKPEGV-FSYFN  206 (271)
T ss_pred             hhhHHHHHHHHHHHHhhhcCCCce-EEEec
Confidence            3  11112333333333 688864 43444

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=95.08  E-value=0.043  Score=44.66  Aligned_cols=57  Identities=23%  Similarity=0.148  Sum_probs=38.5

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL  111 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~  111 (222)
                      ++.+|.+.+...  +..+++|++||+|.+++.+...+..++.-|+++..+...+..++.
T Consensus         8 l~~~I~~~ip~~--~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~~   64 (260)
T PF02086_consen    8 LAKWIIELIPKN--KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLKN   64 (260)
T ss_dssp             GHHHHHHHS-S---S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC--CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHhc
Confidence            455666665321  478999999999999998877778999999999888777644443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.07  E-value=0.14  Score=44.07  Aligned_cols=58  Identities=21%  Similarity=0.178  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHH
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      +++.+.+.......+  -+.++|+|+|.|.++..++-+ +-.|.|||.|....+.|++.-+
T Consensus       139 ~~lselvSsi~~f~g--i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLdk  197 (476)
T KOG2651|consen  139 RRLSELVSSISDFTG--IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLDK  197 (476)
T ss_pred             HHHHHHHHHHHhhcC--CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHHH
Confidence            334444444433333  678999999999999988865 4599999999888877765543

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.07  E-value=0.19  Score=39.78  Aligned_cols=101  Identities=15%  Similarity=0.139  Sum_probs=50.4

Q ss_pred             CCeEEEEecccchhHHHHhh---c---CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhc----CCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLAR---W---VKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDF----GNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~---~---~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~----~~~~~  136 (222)
                      .+.|+|+|.-.|+-++..|.   .   ..+|+|+|++..........  .+.. +++++++||..+...-.    .....
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~  110 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SHPMSPRITFIQGDSIDPEIVDQVRELASPP  110 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence            57999999999998886653   2   25999999964433222111  1111 46999999986553211    11113


Q ss_pred             CCcEEEECCCC--CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          137 KPDIVISDPNR--PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       137 ~fD~ii~~pp~--~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ...+|+.|...  ... ...++.+.. +.+|+.+++..
T Consensus       111 ~~vlVilDs~H~~~hv-l~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  111 HPVLVILDSSHTHEHV-LAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             SSEEEEESS----SSH-HHHHHHHHHT--TT-EEEETS
T ss_pred             CceEEEECCCccHHHH-HHHHHHhCccCCCCCEEEEEe
Confidence            46688888752  222 233333433 57777776553

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.05  E-value=0.14  Score=43.45  Aligned_cols=93  Identities=18%  Similarity=0.133  Sum_probs=64.0

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-  146 (222)
                      -...+|+|.|.|..+-.+....+++-+++.+...+..++.++. .|   |+.+-+|...-.       ++-|+|+.-.- 
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~-------P~~daI~mkWiL  246 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDT-------PKGDAIWMKWIL  246 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC---cceecccccccC-------CCcCeEEEEeec
Confidence            4789999999999999777788899999999888888877764 33   677888876642       24567765431 


Q ss_pred             CCCccHHHHHHHHh----CCCCcEEEEee
Q 043853          147 RPGMHMKLIKFLLK----LKAPRIVYVSC  171 (222)
Q Consensus       147 ~~~~~~~~~~~l~~----l~~~~~v~~~~  171 (222)
                      ...-..+..+.+++    ++|+|.+++-.
T Consensus       247 hdwtDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  247 HDWTDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            01113344444443    77887776544

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.85  E-value=0.04  Score=48.59  Aligned_cols=113  Identities=11%  Similarity=0.025  Sum_probs=73.2

Q ss_pred             CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC---CCCCCcEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN---AFPKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~fD~ii  142 (222)
                      +..+|=+|-|.|.+...+....  ..+++++++|.+++.|+.+.....-.+.+++-.|..++.....+   ....||+++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~  375 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM  375 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence            4578888888899998776543  48999999999999999988554333356666676666544433   335799998


Q ss_pred             ECC-----------CCCCccHHHHHHHHh-CCCCcEEE--EeeCccchHhhH
Q 043853          143 SDP-----------NRPGMHMKLIKFLLK-LKAPRIVY--VSCNPATCARDL  180 (222)
Q Consensus       143 ~~p-----------p~~~~~~~~~~~l~~-l~~~~~v~--~~~~~~~~~~~~  180 (222)
                      .+-           |..-+...++...+. +.|.|...  +.|...++...+
T Consensus       376 ~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~  427 (482)
T KOG2352|consen  376 VDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEV  427 (482)
T ss_pred             EECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHH
Confidence            763           222233444444444 67777755  344444444443

>PRK13699 putative methylase; Provisional

Probab=94.70  E-value=0.15  Score=41.09  Aligned_cols=56  Identities=14%  Similarity=0.091  Sum_probs=37.2

Q ss_pred             EEEEeCchhchhhhcCCCCCCCcEEEECCCCCC-----------------ccHHHHHH-HHhCCCCcEEEEeeCcc
Q 043853          117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG-----------------MHMKLIKF-LLKLKAPRIVYVSCNPA  174 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~-----------------~~~~~~~~-l~~l~~~~~v~~~~~~~  174 (222)
                      .+++++|..+....+.  ++.+|+|+.|||+..                 ....++.. .+.+++++.+++.+...
T Consensus         2 ~~l~~gD~le~l~~lp--d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~   75 (227)
T PRK13699          2 SRFILGNCIDVMARFP--DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN   75 (227)
T ss_pred             CeEEechHHHHHHhCC--ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence            3688999998876654  358999999999631                 01122233 34478998888765543

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=94.67  E-value=0.006  Score=47.97  Aligned_cols=43  Identities=26%  Similarity=0.280  Sum_probs=38.4

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHH
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRN  108 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n  108 (222)
                      ++..++||+|+|.|-++..++....+|++.|.|..|....++.
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence            3457999999999999999998888999999999999888763

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.50  E-value=0.23  Score=45.86  Aligned_cols=98  Identities=14%  Similarity=0.097  Sum_probs=63.5

Q ss_pred             eEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           70 IVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +|+=  ||.|.++..+++    .+.+++.+|.|++.++.+++.       +..++.||+.+..--.....++.|++++.-
T Consensus       402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~~  472 (601)
T PRK03659        402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVITC  472 (601)
T ss_pred             CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence            4444  455555554443    456999999999999988651       367899999775322122234788888876


Q ss_pred             CCCCccHHHHHHHHhCCCCcEEEEeeCccch
Q 043853          146 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATC  176 (222)
Q Consensus       146 p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~  176 (222)
                      +.......+...++...|...++.-+.....
T Consensus       473 ~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~  503 (601)
T PRK03659        473 NEPEDTMKIVELCQQHFPHLHILARARGRVE  503 (601)
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence            6544445566667777787777766655333

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.50  E-value=0.1  Score=44.82  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           65 DDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        65 ~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      +.++..|+|.+|-.|.-+.++|.-   -.+++|+|.++.-.+..++.+...|++.++...+|.... .+ ..+....-.+
T Consensus       211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~-~~~~~~v~~i  288 (413)
T KOG2360|consen  211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-AT-PEKFRDVTYI  288 (413)
T ss_pred             CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CC-cccccceeEE
Confidence            345789999999999999977752   349999999999999999999999998888889998774 21 1112346679


Q ss_pred             EECCC
Q 043853          142 ISDPN  146 (222)
Q Consensus       142 i~~pp  146 (222)
                      +++|+
T Consensus       289 L~Dps  293 (413)
T KOG2360|consen  289 LVDPS  293 (413)
T ss_pred             EeCCC
Confidence            99997

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.19  E-value=0.63  Score=37.26  Aligned_cols=104  Identities=15%  Similarity=0.121  Sum_probs=70.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh--cC----C---CCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FG----N---AFP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~--~~----~---~~~  136 (222)
                      .+..|+++|.|.|+++-.+...+ .+...+|+++..+.-.+...+... ....++++|+..+.-.  +.    .   ++.
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~  128 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFKIEKAFSESLKRPWEDDP  128 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccceehHHhhcchhhcCCcccCC
Confidence            46899999999999999887653 588899999888877776655332 2588888887554211  11    0   111


Q ss_pred             CCcEEEECCCCCCccHHHHHHHHhC--CCCcEEEEee
Q 043853          137 KPDIVISDPNRPGMHMKLIKFLLKL--KAPRIVYVSC  171 (222)
Q Consensus       137 ~fD~ii~~pp~~~~~~~~~~~l~~l--~~~~~v~~~~  171 (222)
                      +-=.+|.|.|+.-..+-+++.+..+  ..|.+.|..+
T Consensus       129 p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt  165 (326)
T KOG0821|consen  129 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRT  165 (326)
T ss_pred             CceEEeccCCccccchHHHHHHhhcccccCCeeecce
Confidence            2234788888877778888888774  4555666443

>PRK11524 putative methyltransferase; Provisional

Probab=93.86  E-value=0.22  Score=41.39  Aligned_cols=60  Identities=17%  Similarity=0.179  Sum_probs=40.3

Q ss_pred             cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC------c-----c-------HHHHHHH-HhCCCCcEEEEeeCccch
Q 043853          116 NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG------M-----H-------MKLIKFL-LKLKAPRIVYVSCNPATC  176 (222)
Q Consensus       116 ~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~------~-----~-------~~~~~~l-~~l~~~~~v~~~~~~~~~  176 (222)
                      +.+++++|+.+....+.  .+.||+|++|||+..      .     .       ..++..+ +.|+++|.+|+.++....
T Consensus         8 ~~~i~~gD~~~~l~~l~--~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~   85 (284)
T PRK11524          8 AKTIIHGDALTELKKIP--SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENM   85 (284)
T ss_pred             CCEEEeccHHHHHHhcc--cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhh
Confidence            46899999999875543  357999999999531      0     0       1233333 337999999988766544


Q ss_pred             H
Q 043853          177 A  177 (222)
Q Consensus       177 ~  177 (222)
                      .
T Consensus        86 ~   86 (284)
T PRK11524         86 P   86 (284)
T ss_pred             h
Confidence            3

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=93.69  E-value=0.28  Score=40.50  Aligned_cols=41  Identities=20%  Similarity=0.063  Sum_probs=36.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHH
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~  107 (222)
                      ...+||-.|||.|.++..+|..+-.+.|.|.|-.|+-..+-
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f   96 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF   96 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence            46799999999999999999998899999999998755544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=93.54  E-value=0.74  Score=33.42  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             CCeEEEEecccch-hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           68 SEIVLDLFCGTGT-IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~-~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ..+++|+|-|.=. .+..|++.+..|+++|+++.       ++. .   .+.++..|+++....+-   ...|+|.+-=|
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY---~~a~lIYSiRP   79 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIY---EGADLIYSIRP   79 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S---------------STTEE---SSS--HHHH---TTEEEEEEES-
T ss_pred             CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHh---cCCcEEEEeCC
Confidence            5699999988654 44577777889999999987       222 2   46799999987543322   25789988655


Q ss_pred             CCCccHHHHHHHHhCCCCc
Q 043853          147 RPGMHMKLIKFLLKLKAPR  165 (222)
Q Consensus       147 ~~~~~~~~~~~l~~l~~~~  165 (222)
                      ..++++.+++..+.....-
T Consensus        80 P~El~~~il~lA~~v~adl   98 (127)
T PF03686_consen   80 PPELQPPILELAKKVGADL   98 (127)
T ss_dssp             -TTSHHHHHHHHHHHT-EE
T ss_pred             ChHHhHHHHHHHHHhCCCE
Confidence            5688888888777655433

; PDB: 2K4M_A.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=93.50  E-value=1.5  Score=33.45  Aligned_cols=119  Identities=18%  Similarity=0.057  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH-hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853           47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL-ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN  125 (222)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l-a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~  125 (222)
                      ......+.+.+.+..    .+..+|+=+||=+-...+.- .....+++-.|+|..--..        +- + ++..=|..
T Consensus         9 ~~T~~~l~~~l~~~~----~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~~-~-~F~fyD~~   74 (162)
T PF10237_consen    9 DETAEFLARELLDGA----LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------GG-D-EFVFYDYN   74 (162)
T ss_pred             HHHHHHHHHHHHHhc----CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------CC-c-ceEECCCC
Confidence            345555555555543    24678999998877766644 1234588999999543322        11 2 34444433


Q ss_pred             c---hhhhcCCCCCCCcEEEECCCCC--CccHHHHHHHHhCC-CCcEEEEeeCccchHhhHHHh
Q 043853          126 K---IGGDFGNAFPKPDIVISDPNRP--GMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       126 ~---~~~~~~~~~~~fD~ii~~pp~~--~~~~~~~~~l~~l~-~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      +   ++..+   ...||+|++|||.-  .........++.+. +++.++ -|-+..+...+..+
T Consensus        75 ~p~~~~~~l---~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii-~~Tg~~~~~~~~~l  134 (162)
T PF10237_consen   75 EPEELPEEL---KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKII-LCTGEEMEELIKKL  134 (162)
T ss_pred             Chhhhhhhc---CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEE-EecHHHHHHHHHHH
Confidence            2   23333   14899999999952  22233345555554 434444 34444454455444

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.45  E-value=0.55  Score=42.92  Aligned_cols=95  Identities=8%  Similarity=-0.057  Sum_probs=57.6

Q ss_pred             eEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           70 IVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +++=+  |.|.++..+++    .+.+++.+|.|++.++.+++.       +...+.+|+.+..--....-++.|.+++.-
T Consensus       419 hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv~~  489 (558)
T PRK10669        419 HALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLLTI  489 (558)
T ss_pred             CEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence            44444  45555554443    456899999999998888641       478999999775322112235789777655


Q ss_pred             CCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          146 NRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       146 p~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      +.......+...++...+...++.-++.
T Consensus       490 ~~~~~~~~iv~~~~~~~~~~~iiar~~~  517 (558)
T PRK10669        490 PNGYEAGEIVASAREKRPDIEIIARAHY  517 (558)
T ss_pred             CChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence            4332223345555666666566655543

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=93.34  E-value=0.23  Score=39.51  Aligned_cols=102  Identities=13%  Similarity=0.064  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhcCCC--CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853           48 HQAEVLYKLIEDCAGLRD--DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN  125 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~--~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~  125 (222)
                      ....-+++|+.+......  ...-++||+||=+....+.-.. .-.|+.||+++.               .-.+.+.|..
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-~fdvt~IDLns~---------------~~~I~qqDFm   93 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-WFDVTRIDLNSQ---------------HPGILQQDFM   93 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC-ceeeEEeecCCC---------------CCCceeeccc
Confidence            355667788877653222  1236899999987776665332 236999999862               2356777777


Q ss_pred             chhhhcCCCCCCCcEEEECC-----CCCCccHHHHHHHHh-CCCCcE
Q 043853          126 KIGGDFGNAFPKPDIVISDP-----NRPGMHMKLIKFLLK-LKAPRI  166 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~p-----p~~~~~~~~~~~l~~-l~~~~~  166 (222)
                      +.+.+.. +.+.||+|.++.     |.+..-.+++..... |++++.
T Consensus        94 ~rplp~~-~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen   94 ERPLPKN-ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             cCCCCCC-cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            7643221 235899997764     322222344443333 677776

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.31  E-value=0.77  Score=38.80  Aligned_cols=97  Identities=13%  Similarity=0.069  Sum_probs=63.9

Q ss_pred             CCCeEEEEecc-cchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-c-hhc---hhhhcCCCCCCC
Q 043853           67 GSEIVLDLFCG-TGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQG-D-LNK---IGGDFGNAFPKP  138 (222)
Q Consensus        67 ~~~~vlDlg~G-~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-d-~~~---~~~~~~~~~~~f  138 (222)
                      .+.+||=+|+| .|..+...|+.  ..+|+.+|.++..++.|++    .|.+.+..... + ..+   ....... ...+
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g-~~~~  243 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALG-KKQP  243 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcc-ccCC
Confidence            48899999999 67777777764  5699999999999999988    35543222222 1 122   2222111 1358


Q ss_pred             cEEEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          139 DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       139 D~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      |+.|-.   .+....+...+..++.+|.+.+..
T Consensus       244 d~~~dC---sG~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  244 DVTFDC---SGAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             CeEEEc---cCchHHHHHHHHHhccCCEEEEec
Confidence            888775   466666777777788887755443

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.28  E-value=0.72  Score=43.06  Aligned_cols=102  Identities=16%  Similarity=0.111  Sum_probs=62.2

Q ss_pred             CCeEEEEecccchhHHHHhhcC--------------CeEEEEeCCHHHHHHHHH--------------HHHH-----cCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV--------------KHVYGYEVVPQAISDACR--------------NAKL-----NNI  114 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~--------------~~v~gvD~~~~~i~~a~~--------------n~~~-----~~~  114 (222)
                      .-+|+|+|=|+|...+...+..              -+++++|..|-..+..++              ....     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            4689999999999776443211              178999986532222221              1111     122


Q ss_pred             -------C--cEEEEeCchhchhhhcCCCCCCCcEEEECC--CCC---CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          115 -------S--NATFVQGDLNKIGGDFGNAFPKPDIVISDP--NRP---GMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       115 -------~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p--p~~---~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                             .  .+++..+|+.+....+.   ..+|+++.|+  |..   -...++...+.+ .++++.+...|.
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~---~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~  207 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLD---ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS  207 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhcc---ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence                   1  26688899988776543   3699999996  421   123566666666 467776654443

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=93.28  E-value=0.27  Score=43.99  Aligned_cols=96  Identities=20%  Similarity=0.232  Sum_probs=65.9

Q ss_pred             CCeEEEEecccchhHHHH---hhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcE
Q 043853           68 SEIVLDLFCGTGTIGLTL---ARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l---a~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      -.+|+-+|+|-|-+.-+.   |+.   .-+++++|.+|.++-..+. .+..+-+ +|+++..|..++.+.    ..+.|+
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap----~eq~DI  442 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP----REQADI  442 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc----hhhccc
Confidence            457889999999977533   222   2289999999999987754 3222223 499999999998742    347888


Q ss_pred             EEECC----CCCCccHHHHHHHHh-CCCCcEEE
Q 043853          141 VISDP----NRPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       141 ii~~p----p~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      +++-.    -..++.++=++-+.. +++.|+.+
T Consensus       443 ~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  443 IVSELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             hHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            86532    245666776776654 67777654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.05  E-value=0.6  Score=43.29  Aligned_cols=98  Identities=12%  Similarity=0.053  Sum_probs=62.1

Q ss_pred             CeEEEEecccc-hhHH-HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           69 EIVLDLFCGTG-TIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        69 ~~vlDlg~G~G-~~~~-~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      .+|+=+|||.= .... .+.+.+.+++.+|.|++.++.+++.       +..++.+|+.+..--.....++.|.+++.-+
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv~~~  473 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLINAID  473 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence            56777777633 3222 2334456899999999999988752       3678999997764221122347888877655


Q ss_pred             CCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          147 RPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       147 ~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      .......+...++.+.|.-.++.-+..
T Consensus       474 d~~~n~~i~~~ar~~~p~~~iiaRa~d  500 (621)
T PRK03562        474 DPQTSLQLVELVKEHFPHLQIIARARD  500 (621)
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            444445555666666777666665544

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=92.94  E-value=0.24  Score=40.28  Aligned_cols=86  Identities=16%  Similarity=0.137  Sum_probs=51.1

Q ss_pred             EEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC--C
Q 043853           72 LDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP--G  149 (222)
Q Consensus        72 lDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~--~  149 (222)
                      +..+.||=.++..+.+..-+.+.+|+.|.-.+..++|+..  ..++++++.|..+....+..+..+=-+|++|||+.  .
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~  139 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKD  139 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STT
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCch
Confidence            7788888888888887777999999999999999998864  34699999999887655443444566899999943  3


Q ss_pred             ccHHHHHHHH
Q 043853          150 MHMKLIKFLL  159 (222)
Q Consensus       150 ~~~~~~~~l~  159 (222)
                      -...+.+.+.
T Consensus       140 dy~~v~~~l~  149 (245)
T PF04378_consen  140 DYQRVVDALA  149 (245)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3455555543

; PDB: 2OO3_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.71  E-value=1.5  Score=37.50  Aligned_cols=95  Identities=14%  Similarity=0.096  Sum_probs=59.8

Q ss_pred             CCCCeEEEEecc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++++|+=.|+| .|..++.+|+ .+.+|+++|.+++-.+.|++.    |.+  .++...-.+......   +.||+++.
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~~~~~---~~~d~ii~  235 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GAD--HVINSSDSDALEAVK---EIADAIID  235 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhhHHhH---hhCcEEEE
Confidence            358899888888 4446666666 568999999999999888874    333  333322112222211   24999988


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      .-+ .   ..+...++.++++|.+.+-..+
T Consensus       236 tv~-~---~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         236 TVG-P---ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             CCC-h---hhHHHHHHHHhcCCEEEEECCC
Confidence            766 3   4445555556766666555444

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.45  E-value=1.9  Score=38.38  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             eEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           70 IVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +++-+|||.--+...+-+. ...|+.+|+|+..++.....-. ..-+-..+...|.......    ++.||+++.-+
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fe----dESFdiVIdkG  122 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFE----DESFDIVIDKG  122 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCC----CcceeEEEecC
Confidence            8999999999999977664 5699999999999988765432 1122378888888776543    34677776543

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.41  E-value=1.4  Score=31.42  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=58.0

Q ss_pred             CCeEEEEecccch-hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           68 SEIVLDLFCGTGT-IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~-~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ..+|+|+|.|-=. .+-.+++.+..++++|+++.       ++   + +.+++...|+++....+-   ...|+|.+--|
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~iY---~~A~lIYSiRp   79 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TA---P-EGLRFVVDDITNPNISIY---EGADLIYSIRP   79 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cC---c-ccceEEEccCCCccHHHh---hCccceeecCC
Confidence            4589999877443 33477777889999999976       21   1 358899999987654322   25788988766


Q ss_pred             CCCccHHHHHHHHhCCC
Q 043853          147 RPGMHMKLIKFLLKLKA  163 (222)
Q Consensus       147 ~~~~~~~~~~~l~~l~~  163 (222)
                      .++++..+++..+.++.
T Consensus        80 ppEl~~~ildva~aVga   96 (129)
T COG1255          80 PPELQSAILDVAKAVGA   96 (129)
T ss_pred             CHHHHHHHHHHHHhhCC
Confidence            66777777777765543

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.41  E-value=0.88  Score=39.38  Aligned_cols=115  Identities=17%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc-------CC-Cc-EEEEeC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN-------NI-SN-ATFVQG  122 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~-------~~-~~-v~~~~~  122 (222)
                      +.-+.+.+++.+  ++...|+|+|.|.+....|..  +..-.|+++....-+.|..+.+.+       |- .+ ++.+++
T Consensus       181 l~si~dEl~~g~--~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g  258 (419)
T KOG3924|consen  181 LRSIVDELKLGP--ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG  258 (419)
T ss_pred             HHHHHHHhccCC--CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence            334444455444  889999999999999877653  457889998776666665554333       33 23 888888


Q ss_pred             chhchhhhcCCCCCCCcEEEECCCC--CCccHHHHHHHHhCCCCcEEEEeeC
Q 043853          123 DLNKIGGDFGNAFPKPDIVISDPNR--PGMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       123 d~~~~~~~~~~~~~~fD~ii~~pp~--~~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      +.........- ...-++|+.|--+  +.+..++.+.+..+++|-. +++..
T Consensus       259 sf~~~~~v~eI-~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtr-IiS~~  308 (419)
T KOG3924|consen  259 SFLDPKRVTEI-QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTR-IISSK  308 (419)
T ss_pred             ccCCHHHHHHH-hhcceEEEEecccCCHHHHHhhHHHHhhCCCcce-Eeccc
Confidence            87654322110 1256788887532  2233333333444455444 44554

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=91.07  E-value=1.1  Score=36.63  Aligned_cols=131  Identities=13%  Similarity=0.134  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh-------cCCeEEEEeCC---------------------
Q 043853           47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR-------WVKHVYGYEVV---------------------   98 (222)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~-------~~~~v~gvD~~---------------------   98 (222)
                      ......+...+...+....  ...|+|+||-.|+.++.++.       ...++++.|.=                     
T Consensus        56 ~~Rl~~L~~~~~~v~~~~v--pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~  133 (248)
T PF05711_consen   56 RERLDNLYQAVEQVLAEDV--PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE  133 (248)
T ss_dssp             HHHHHHHHHHHHHCCHTTS---SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred             HHHHHHHHHHHHHHHhcCC--CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence            3444444454444443222  34799999999987764432       12478887740                     


Q ss_pred             -----HHHHHHHHHHHHHcCC--CcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh----CCCCcEE
Q 043853           99 -----PQAISDACRNAKLNNI--SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK----LKAPRIV  167 (222)
Q Consensus        99 -----~~~i~~a~~n~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~----l~~~~~v  167 (222)
                           ....+..++|+...++  ++++++.|.+.+......  ..++-++-+|-   ++.....+.|..    +.+||++
T Consensus       134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p--~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiI  208 (248)
T PF05711_consen  134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP--IERIALLHLDC---DLYESTKDALEFLYPRLSPGGII  208 (248)
T ss_dssp             CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T--T--EEEEEE------SHHHHHHHHHHHGGGEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC--CccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEE
Confidence                 1245666666666665  459999999987765432  23566666664   445555555443    6789999


Q ss_pred             EEeeCcc-chHhhHHHhh
Q 043853          168 YVSCNPA-TCARDLDYLC  184 (222)
Q Consensus       168 ~~~~~~~-~~~~~~~~l~  184 (222)
                      +++.-.. ...+.+..|.
T Consensus       209 i~DDY~~~gcr~AvdeF~  226 (248)
T PF05711_consen  209 IFDDYGHPGCRKAVDEFR  226 (248)
T ss_dssp             EESSTTTHHHHHHHHHHH
T ss_pred             EEeCCCChHHHHHHHHHH
Confidence            8876432 2233344444

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=90.88  E-value=0.19  Score=41.51  Aligned_cols=36  Identities=19%  Similarity=0.156  Sum_probs=30.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHH
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAI  102 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i  102 (222)
                      .+++|||+|||.|..++.+...+ ..+...|.|...+
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             cCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            47899999999999999776554 6889999998877

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.69  E-value=8  Score=34.09  Aligned_cols=75  Identities=20%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             CCCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ...+++=+|+|  .++..++    +.+..++.+|.+++.++.+++..     .++.++.+|..+...-.......+|.++
T Consensus       230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~vi  302 (453)
T PRK09496        230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAFI  302 (453)
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence            35678777774  4444443    34669999999999888776642     2467899998655322122235789888


Q ss_pred             ECCCCC
Q 043853          143 SDPNRP  148 (222)
Q Consensus       143 ~~pp~~  148 (222)
                      +..+..
T Consensus       303 ~~~~~~  308 (453)
T PRK09496        303 ALTNDD  308 (453)
T ss_pred             ECCCCc
Confidence            877643

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.30  E-value=8.7  Score=31.87  Aligned_cols=42  Identities=19%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             CeEEEEeccc-c-hhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH
Q 043853           69 EIVLDLFCGT-G-TIGLTLARWVKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        69 ~~vlDlg~G~-G-~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      .+|.=+|+|. | .++..++..+.+|+.+|.+++.++.+++.++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~   47 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIE   47 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence            3566677773 2 2333555666799999999999988766544

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=89.71  E-value=4.3  Score=28.38  Aligned_cols=79  Identities=18%  Similarity=0.313  Sum_probs=41.0

Q ss_pred             CCcEEEECCCCCC----------------ccHHHHHHHHhCCCCcEEEEeeC----ccchHhhHHHhhccCCCCccCC-C
Q 043853          137 KPDIVISDPNRPG----------------MHMKLIKFLLKLKAPRIVYVSCN----PATCARDLDYLCHGVGDQNIKG-C  195 (222)
Q Consensus       137 ~fD~ii~~pp~~~----------------~~~~~~~~l~~l~~~~~v~~~~~----~~~~~~~~~~l~~~~~~~~~~~-~  195 (222)
                      +||+|+.|||+..                +...+++....+..|.+.++..+    .......++.+.       ++. .
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll~G~~~~I~P~~~l~~~~~~~~lR~~l-------~~~~~   74 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLLNGYLSFITPNSFLKSGKYGKKLRKFL-------LNNTN   74 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHhCCeEEEEeChHHhCcCchHHHHHHHH-------hcCCC
Confidence            5999999999321                22234444333444444455532    222333344332       112 1


Q ss_pred             e-EEeEeeeec-cCCCCCceeEEEEEEeC
Q 043853          196 Y-KLKSLQPVD-MFPHTPHIECVCLLELS  222 (222)
Q Consensus       196 ~-~~~~~~~~~-~~p~~~~~~~v~~~~~~  222 (222)
                      . .+....... .|.....-.+|+.|+++
T Consensus        75 i~~i~~f~~~~~vF~~a~v~t~I~~~~k~  103 (106)
T PF07669_consen   75 IKKIIDFGERKKVFEDASVYTCIIIFKKS  103 (106)
T ss_pred             eeEEEECCCcccCCCCCCcceeEEEEEec
Confidence            2 233333322 68888888899988874

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=89.43  E-value=0.42  Score=38.97  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=33.3

Q ss_pred             CCeEEEEecccchhHHHHhhc---C-------CeEEEEeCCHHHHHHHHHHHHH
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---V-------KHVYGYEVVPQAISDACRNAKL  111 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~-------~~v~gvD~~~~~i~~a~~n~~~  111 (222)
                      .-+|+|+|+|+|.++..+.+.   .       .+++-+|.||.+.+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            369999999999999865542   1       2799999999999888888754

; PDB: 4F3N_A 1ZKD_B.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=89.28  E-value=0.56  Score=36.56  Aligned_cols=70  Identities=23%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-chhchhhhc----CCCCCC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQG-DLNKIGGDF----GNAFPK  137 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-d~~~~~~~~----~~~~~~  137 (222)
                      .++.+|||+||..|.++....+..   ..|.|||+-+-           ...+.+.++++ |+.+.....    .-+..+
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~  136 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP  136 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence            358999999999999999777654   38999998532           12334667776 554432110    113357


Q ss_pred             CcEEEECCC
Q 043853          138 PDIVISDPN  146 (222)
Q Consensus       138 fD~ii~~pp  146 (222)
                      .|+|++|..
T Consensus       137 VdvVlSDMa  145 (232)
T KOG4589|consen  137 VDVVLSDMA  145 (232)
T ss_pred             ccEEEeccC
Confidence            999999974

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.18  E-value=13  Score=31.62  Aligned_cols=92  Identities=12%  Similarity=0.140  Sum_probs=54.0

Q ss_pred             CeEEEEecccch--hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH-------cCCC------cEEEEeCchhchhhhcCC
Q 043853           69 EIVLDLFCGTGT--IGLTLARWVKHVYGYEVVPQAISDACRNAKL-------NNIS------NATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        69 ~~vlDlg~G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~-------~~~~------~v~~~~~d~~~~~~~~~~  133 (222)
                      ++|-=+|+|+=+  ++..++..+.+|+..|.+++.++.++..++.       .+..      ++++. .|..+..     
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-----   81 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-----   81 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh-----
Confidence            567778887322  3345566788999999999988877664432       1211      12221 1222211     


Q ss_pred             CCCCCcEEEECCC-CCCccHHHHHHHHhCCCCcEEE
Q 043853          134 AFPKPDIVISDPN-RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       134 ~~~~fD~ii~~pp-~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                        ...|+|+-.-| ...+...+...+....+.+.++
T Consensus        82 --~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIl  115 (321)
T PRK07066         82 --ADADFIQESAPEREALKLELHERISRAAKPDAII  115 (321)
T ss_pred             --cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEE
Confidence              25799998877 3455666666776654444444

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.00  E-value=3.9  Score=36.09  Aligned_cols=91  Identities=13%  Similarity=0.069  Sum_probs=53.9

Q ss_pred             EEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           71 VLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        71 vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      |+=+|  .|.++..+++    .+..++.+|.+++.++.+++..      +++++.+|..+...-.......+|.+++..+
T Consensus         3 viIiG--~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~   74 (453)
T PRK09496          3 IIIVG--AGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL------DVRTVVGNGSSPDVLREAGAEDADLLIAVTD   74 (453)
T ss_pred             EEEEC--CCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc------CEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence            44444  4777776654    3569999999999887776421      4788889886543211111246888888766


Q ss_pred             CCCccHHHHHHHHhCCCCcEEEE
Q 043853          147 RPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       147 ~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      .......+...++.+.+...+++
T Consensus        75 ~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         75 SDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             ChHHHHHHHHHHHHhcCCCeEEE
Confidence            44433334444455534433443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.08  E-value=14  Score=30.62  Aligned_cols=42  Identities=17%  Similarity=-0.003  Sum_probs=30.6

Q ss_pred             CeEEEEecccchhHH--HHhhcCCeEEEEeCCHHHHHHHHHHHH
Q 043853           69 EIVLDLFCGTGTIGL--TLARWVKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~--~la~~~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      .+|.=+|+|+=+.++  .+++.+.+|+.+|.++..++.+++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~   47 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA   47 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence            357777887544444  445566799999999999988877653

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=87.97  E-value=5.2  Score=34.57  Aligned_cols=42  Identities=21%  Similarity=0.268  Sum_probs=33.4

Q ss_pred             CCCeEEEEeccc-chhHHHHhhc-CC-eEEEEeCCHHHHHHHHHH
Q 043853           67 GSEIVLDLFCGT-GTIGLTLARW-VK-HVYGYEVVPQAISDACRN  108 (222)
Q Consensus        67 ~~~~vlDlg~G~-G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n  108 (222)
                      ++.+||..|||. |..++.+++. +. +++++|.+++..+.+++.
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            478899999886 7777777764 33 699999999998888874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.94  E-value=1.3  Score=32.98  Aligned_cols=49  Identities=20%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             EEecccc--hhHHHHh--hc--CCeEEEEeCCHHHHHHHHHH--HHHcCCCc-EEEEe
Q 043853           73 DLFCGTG--TIGLTLA--RW--VKHVYGYEVVPQAISDACRN--AKLNNISN-ATFVQ  121 (222)
Q Consensus        73 Dlg~G~G--~~~~~la--~~--~~~v~gvD~~~~~i~~a~~n--~~~~~~~~-v~~~~  121 (222)
                      |+|++.|  .....+.  ..  ..+++++|-+|..++..++|  +..+...+ +++..
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~   58 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP   58 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence            8999999  5555432  22  45899999999999999999  66664322 44444

; PDB: 2PY6_A.

>PTZ00357 methyltransferase; Provisional

Probab=87.29  E-value=1.6  Score=40.78  Aligned_cols=91  Identities=12%  Similarity=0.031  Sum_probs=56.6

Q ss_pred             CeEEEEecccchhHHHH---hhc-C--CeEEEEeCCHHHHHHHHHHHHH---cCC------CcEEEEeCchhchhhhc--
Q 043853           69 EIVLDLFCGTGTIGLTL---ARW-V--KHVYGYEVVPQAISDACRNAKL---NNI------SNATFVQGDLNKIGGDF--  131 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~l---a~~-~--~~v~gvD~~~~~i~~a~~n~~~---~~~------~~v~~~~~d~~~~~~~~--  131 (222)
                      ..|+=+|+|-|-+.-..   ++. +  -++++||.||.++...+.+...   -+-      ..|+++..|..++....  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            36899999999976533   222 2  2899999997765555444322   111      13899999999885321  


Q ss_pred             -----CCCCCCCcEEEECC----CCCCccHHHHHHHH
Q 043853          132 -----GNAFPKPDIVISDP----NRPGMHMKLIKFLL  159 (222)
Q Consensus       132 -----~~~~~~fD~ii~~p----p~~~~~~~~~~~l~  159 (222)
                           ....+++|+||+-.    -..++.++-++-+.
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQ  818 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFH  818 (1072)
T ss_pred             ccccccccccccceehHhhhcccccccCCHHHHHHHH
Confidence                 11113699997743    24566666666554

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=87.10  E-value=6.2  Score=31.75  Aligned_cols=99  Identities=16%  Similarity=0.077  Sum_probs=53.9

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCC-CCCcEEE
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~fD~ii  142 (222)
                      .++||=+|+ +|.++..+    ++.+.+|+++..++......   ..  ...+++++.+|+.+....+.... ..+|+||
T Consensus        17 ~~~ilItGa-sG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~--~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi   90 (251)
T PLN00141         17 TKTVFVAGA-TGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS---LP--QDPSLQIVRADVTEGSDKLVEAIGDDSDAVI   90 (251)
T ss_pred             CCeEEEECC-CcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh---cc--cCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence            467777774 44444433    34456888887776533221   11  11258889999876322221111 2589999


Q ss_pred             ECCCCCC---c----------cHHHHHHHHhCCCCcEEEEeeC
Q 043853          143 SDPNRPG---M----------HMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       143 ~~pp~~~---~----------~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      ++++...   .          ...+++.+...+.+.++++++.
T Consensus        91 ~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         91 CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             ECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            8865211   0          1344555554455678887763

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.89  E-value=2.6  Score=35.18  Aligned_cols=77  Identities=18%  Similarity=0.233  Sum_probs=57.7

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      .++.||=-|.|+|.   +++.+|+++.++.-.|++....+...+.++..|  .+.....|+.+..+      ...++-+.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            57889999988886   556778888899999999999999988888776  57777777755432      11223357


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.|.
T Consensus       115 V~ILVNNA  122 (300)
T KOG1201|consen  115 VDILVNNA  122 (300)
T ss_pred             ceEEEecc
Confidence            89988875

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=86.68  E-value=5.3  Score=27.40  Aligned_cols=57  Identities=19%  Similarity=0.381  Sum_probs=38.3

Q ss_pred             CeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      .+|| +.||+|.-+..++                +..++.++.+|++ +++...+..+.....    ..+|+|++.|.-
T Consensus         4 ~~IL-l~C~~G~sSS~l~----------------~k~~~~~~~~gi~-~~v~a~~~~~~~~~~----~~~Dvill~pqi   60 (95)
T TIGR00853         4 TNIL-LLCAAGMSTSLLV----------------NKMNKAAEEYGVP-VKIAAGSYGAAGEKL----DDADVVLLAPQV   60 (95)
T ss_pred             cEEE-EECCCchhHHHHH----------------HHHHHHHHHCCCc-EEEEEecHHHHHhhc----CCCCEEEECchH
Confidence            3455 7888886554433                3335566667774 889998887765432    368999998863

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=86.25  E-value=2.9  Score=35.97  Aligned_cols=60  Identities=13%  Similarity=0.083  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCCCC-CCCeEEEEecccchhHHHHhh----c------CCeEEEEeCCHHHHHHHHHHHHHcC
Q 043853           54 YKLIEDCAGLRDD-GSEIVLDLFCGTGTIGLTLAR----W------VKHVYGYEVVPQAISDACRNAKLNN  113 (222)
Q Consensus        54 ~~~i~~~~~~~~~-~~~~vlDlg~G~G~~~~~la~----~------~~~v~gvD~~~~~i~~a~~n~~~~~  113 (222)
                      ..++.+..+..+. ..-.++|+|+|+|.++.-+.+    .      ..++.-||.|++..+.=+++++...
T Consensus        63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            4445554443332 345799999999999875443    2      2388999999999988888876543

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=85.91  E-value=0.71  Score=38.22  Aligned_cols=90  Identities=17%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .+..++|.|||.|-.+..-  -...++|.|.+...+..+++.       +. ....+|+...+..    ...||..+...
T Consensus        45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~----~~s~d~~lsia  111 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFR----EESFDAALSIA  111 (293)
T ss_pred             CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC-------CCceeehhhhhcCCCC----CCccccchhhh
Confidence            3789999999999765421  122689999999988888753       33 6888899887764    24688776554


Q ss_pred             CC-----CCccHHHHHHH-HhCCCCcEEEE
Q 043853          146 NR-----PGMHMKLIKFL-LKLKAPRIVYV  169 (222)
Q Consensus       146 p~-----~~~~~~~~~~l-~~l~~~~~v~~  169 (222)
                      -.     ......+++.+ +.++|+|-..+
T Consensus       112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  112 VIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            21     11223444443 44788776443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=85.83  E-value=8.5  Score=32.97  Aligned_cols=94  Identities=18%  Similarity=0.108  Sum_probs=56.5

Q ss_pred             CCeEEEEecc-cchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-chhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCG-TGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQG-DLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G-~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +.+|+=+||| .|.+++.+++.  ..+|+.+|.++.-++.|++...   .+.+..... +......... ....+|++|=
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---~~~~~~~~~~~~~~~~~~~t-~g~g~D~vie  244 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---ADVVVNPSEDDAGAEILELT-GGRGADVVIE  244 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---CeEeecCccccHHHHHHHHh-CCCCCCEEEE
Confidence            3489999999 67777777764  3599999999999999987431   111111111 2211111111 1136999887


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEE
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      ..   +....+...+..++++|.+.
T Consensus       245 ~~---G~~~~~~~ai~~~r~gG~v~  266 (350)
T COG1063         245 AV---GSPPALDQALEALRPGGTVV  266 (350)
T ss_pred             CC---CCHHHHHHHHHHhcCCCEEE
Confidence            54   33344555666667766654

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=85.77  E-value=2.9  Score=35.96  Aligned_cols=102  Identities=16%  Similarity=0.030  Sum_probs=53.1

Q ss_pred             CCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .+++||+|.|.|.-..++-.-.+   .++-++.||..-+...........+.......|+..-...+... +.|++++..
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i~~  192 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAIVL  192 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhhhh
Confidence            56799999999987776654433   66777888766555544433222222333344443322222211 356666543


Q ss_pred             C---CCCCccH---HHHHHHHh-CCCCcEEEEee
Q 043853          145 P---NRPGMHM---KLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       145 p---p~~~~~~---~~~~~l~~-l~~~~~v~~~~  171 (222)
                      -   |. +...   ..++.+.. +.|||.+.+..
T Consensus       193 ~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         193 DELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             hhhccc-cCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            2   21 1112   23444433 56777665443

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=85.71  E-value=12  Score=34.46  Aligned_cols=76  Identities=18%  Similarity=0.173  Sum_probs=46.6

Q ss_pred             CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHc-----C---CCcEEEEeCchhchhhhcCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLN-----N---ISNATFVQGDLNKIGGDFGNAF  135 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~-----~---~~~v~~~~~d~~~~~~~~~~~~  135 (222)
                      ++++|=.| |+|+++..++    +.+.+|++++.++...+.....+...     +   ..+++++.+|+.+... +....
T Consensus        80 gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es-I~~aL  157 (576)
T PLN03209         80 EDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ-IGPAL  157 (576)
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH-HHHHh
Confidence            55555554 5677776554    34668999999887766555444322     1   1247889999876432 11112


Q ss_pred             CCCcEEEECC
Q 043853          136 PKPDIVISDP  145 (222)
Q Consensus       136 ~~fD~ii~~p  145 (222)
                      ...|+||++.
T Consensus       158 ggiDiVVn~A  167 (576)
T PLN03209        158 GNASVVICCI  167 (576)
T ss_pred             cCCCEEEEcc
Confidence            3689988875

>PLN02540 methylenetetrahydrofolate reductase

Probab=85.61  E-value=5.1  Score=36.67  Aligned_cols=81  Identities=22%  Similarity=0.354  Sum_probs=60.4

Q ss_pred             cccCCHH-HHHHHHHHHHHHhcCCCCCCCeEEEEecccch----hHHHHhh----c-----CCeEEEEeCCHHHHHHHHH
Q 043853           42 FFQTNTH-QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGT----IGLTLAR----W-----VKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        42 f~~~~~~-~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~----~~~~la~----~-----~~~v~gvD~~~~~i~~a~~  107 (222)
                      ||++... ..+.+++.+..+...    +...+++.-|.|+    .++.++.    .     ..++++.|.+...++.+-.
T Consensus         5 fFPPKt~~g~~nL~~~~~rl~~~----~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~   80 (565)
T PLN02540          5 FFPPKTEEGVDNLFERMDRMVAH----GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALE   80 (565)
T ss_pred             EECCCCchHHHHHHHHHHHHhcc----CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHH
Confidence            4555443 477777777776543    3579999999996    2333332    2     1389999999999999999


Q ss_pred             HHHHcCCCcEEEEeCchhc
Q 043853          108 NAKLNNISNATFVQGDLNK  126 (222)
Q Consensus       108 n~~~~~~~~v~~~~~d~~~  126 (222)
                      .+...|+.|+=.+.||...
T Consensus        81 ~a~~~GIrNILALrGDpp~   99 (565)
T PLN02540         81 TIKSNGIQNILALRGDPPH   99 (565)
T ss_pred             HHHHCCCCEEEEECCCCCC
Confidence            9999999999999999754

>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=85.56  E-value=2.8  Score=28.84  Aligned_cols=41  Identities=15%  Similarity=0.200  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853          101 AISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus       101 ~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      +++..++.++.+|++ +++...+..+.....    ..+|+|++.|-
T Consensus        15 ~~~ki~~~~~~~~~~-~~v~~~~~~~~~~~~----~~~Diil~~Pq   55 (96)
T cd05564          15 LVKKMKKAAEKRGID-AEIEAVPESELEEYI----DDADVVLLGPQ   55 (96)
T ss_pred             HHHHHHHHHHHCCCc-eEEEEecHHHHHHhc----CCCCEEEEChh
Confidence            344557777778885 899999988775321    47999999885

In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d

>PRK07904 short chain dehydrogenase; Provisional

Probab=85.34  E-value=5.7  Score=32.05  Aligned_cols=77  Identities=17%  Similarity=0.050  Sum_probs=47.5

Q ss_pred             CCCeEEEEecccchhHHHHh----hc-CCeEEEEeCCHHH-HHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLA----RW-VKHVYGYEVVPQA-ISDACRNAKLNNISNATFVQGDLNKIG------GDFGNA  134 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la----~~-~~~v~gvD~~~~~-i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~  134 (222)
                      .++++|=.|+ +|+++..++    +. +.+|+.++.++.. ++.+.+.++..+..+++++..|+.+..      ..... 
T Consensus         7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~-   84 (253)
T PRK07904          7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA-   84 (253)
T ss_pred             CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh-
Confidence            3567777776 556665554    33 3689999888764 665555565554446888888875532      11111 


Q ss_pred             CCCCcEEEECC
Q 043853          135 FPKPDIVISDP  145 (222)
Q Consensus       135 ~~~fD~ii~~p  145 (222)
                      .+..|+++.+.
T Consensus        85 ~g~id~li~~a   95 (253)
T PRK07904         85 GGDVDVAIVAF   95 (253)
T ss_pred             cCCCCEEEEee
Confidence            14689888764

>PRK05867 short chain dehydrogenase; Provisional

Probab=85.22  E-value=6.4  Score=31.53  Aligned_cols=76  Identities=14%  Similarity=0.053  Sum_probs=48.8

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|++.| ++.    .+++.+.+|+.++.++..++...+.++..+ .++.++..|+.+...      ......+.
T Consensus         9 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          9 GKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            577888886544 443    444557799999999888777766665544 247778888755321      11111236


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        87 id~lv~~a   94 (253)
T PRK05867         87 IDIAVCNA   94 (253)
T ss_pred             CCEEEECC
Confidence            89998875

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=85.11  E-value=3.2  Score=34.26  Aligned_cols=87  Identities=18%  Similarity=0.055  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcC-----CCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCc
Q 043853           49 QAEVLYKLIEDCAGL-----RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD  123 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~-----~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d  123 (222)
                      .+-++-+.+...+..     .-.+++..+|+|+-.|+.+..+.+++-.|++||.-+.+-...     .  -..|+....|
T Consensus       188 StLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~-----d--tg~v~h~r~D  260 (358)
T COG2933         188 STLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLM-----D--TGQVTHLRED  260 (358)
T ss_pred             hhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhh-----c--ccceeeeecc
Confidence            344444445444421     124689999999999999999999889999999875432221     1  1238888999


Q ss_pred             hhchhhhcCCCCCCCcEEEECCC
Q 043853          124 LNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus       124 ~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      .+.+.++    ..+.|..+||.-
T Consensus       261 Gfk~~P~----r~~idWmVCDmV  279 (358)
T COG2933         261 GFKFRPT----RSNIDWMVCDMV  279 (358)
T ss_pred             CcccccC----CCCCceEEeehh
Confidence            9888652    247999999973

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=84.65  E-value=1.5  Score=35.96  Aligned_cols=32  Identities=22%  Similarity=0.454  Sum_probs=28.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVV   98 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~   98 (222)
                      +++.+.|+++|||..+-.+.+.+..|++-|+-
T Consensus        27 s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle   58 (330)
T COG3392          27 SGKIFCDIFAGTGVVGRFFKKAGNKIIANDLE   58 (330)
T ss_pred             CCCeeeeeccCccHHHHHHHHhcchhhhchHH
Confidence            46789999999999999998888899988873

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=84.53  E-value=12  Score=31.61  Aligned_cols=92  Identities=13%  Similarity=0.064  Sum_probs=51.0

Q ss_pred             CCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++++||=.||| .|..++.+++. +. +++++|.+++.++.+++    .|.+. +.....+..+...    ..+.+|+++
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~----~~g~~D~vi  240 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA----EKGYFDVSF  240 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc----cCCCCCEEE
Confidence            46788877765 33344455553 33 79999999988887765    35532 2221223322221    112589888


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      -....   ...+...+..++++|.+..
T Consensus       241 d~~G~---~~~~~~~~~~l~~~G~iv~  264 (343)
T PRK09880        241 EVSGH---PSSINTCLEVTRAKGVMVQ  264 (343)
T ss_pred             ECCCC---HHHHHHHHHHhhcCCEEEE
Confidence            65421   2234445555677776553

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=84.17  E-value=15  Score=33.43  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=30.7

Q ss_pred             CCCeEEEEeccc-chhHHHHhh-cCCeEEEEeCCHHHHHHHHH
Q 043853           67 GSEIVLDLFCGT-GTIGLTLAR-WVKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        67 ~~~~vlDlg~G~-G~~~~~la~-~~~~v~gvD~~~~~i~~a~~  107 (222)
                      ++.+++=+|+|. |..++.+++ .+..|+.+|.++..++.++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            468999999984 445555554 46789999999998777765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=83.50  E-value=3.4  Score=34.90  Aligned_cols=40  Identities=18%  Similarity=0.022  Sum_probs=34.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHH
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDAC  106 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~  106 (222)
                      ...+||-.|||.|.++..+|..+.++-|-|.|--|+-...
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~  189 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSS  189 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHH
Confidence            3578999999999999999999999999999988875543

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=83.14  E-value=1.5  Score=41.26  Aligned_cols=44  Identities=27%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      .+..++|.++|-|.+.+...+.+..++++|.+|.+.-..|..+.
T Consensus        90 ~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlE  133 (875)
T COG1743          90 EGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLE  133 (875)
T ss_pred             cCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHh
Confidence            46789999999999999999999999999999999877776664

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=82.85  E-value=2.8  Score=29.80  Aligned_cols=88  Identities=15%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             ccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHH
Q 043853           77 GTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKL  154 (222)
Q Consensus        77 G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~  154 (222)
                      |.|..++.+|+. +.+|+++|.++.-.+.+++    .|.+. +.....|+.+....+.. ...+|++|-...   ....+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~-~~~~d~vid~~g---~~~~~   72 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTG-GRGVDVVIDCVG---SGDTL   72 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTT-TSSEEEEEESSS---SHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcccccccccccccccccccccc-cccceEEEEecC---cHHHH
Confidence            567888877764 5799999999988887765    45432 22222333333333221 136999887653   23455


Q ss_pred             HHHHHhCCCCcEEEEeeC
Q 043853          155 IKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       155 ~~~l~~l~~~~~v~~~~~  172 (222)
                      ...+..++++|.+.+...
T Consensus        73 ~~~~~~l~~~G~~v~vg~   90 (130)
T PF00107_consen   73 QEAIKLLRPGGRIVVVGV   90 (130)
T ss_dssp             HHHHHHEEEEEEEEEESS
T ss_pred             HHHHHHhccCCEEEEEEc
Confidence            556666787777665543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=82.83  E-value=2.5  Score=33.20  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=41.4

Q ss_pred             CCeEEEEecccchhHHHHhhc----C--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853           68 SEIVLDLFCGTGTIGLTLARW----V--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI  127 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~----~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~  127 (222)
                      ...|+|.|.--|+-++.+|..    +  .+|+++|+|-...+-+...     .+++.+++++..+.
T Consensus        70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dp  130 (237)
T COG3510          70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDP  130 (237)
T ss_pred             CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCH
Confidence            578999999999988877642    3  3899999986655444322     56799999987665

>PRK06125 short chain dehydrogenase; Provisional

Probab=82.51  E-value=12  Score=30.10  Aligned_cols=77  Identities=14%  Similarity=0.067  Sum_probs=47.7

Q ss_pred             CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh--hcCCCCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG--DFGNAFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~fD~i  141 (222)
                      ++++|=.|+ +|+++..    +++.+.+|+.++.++...+.+.+.+....-.++.++..|+.+...  .........|++
T Consensus         7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l   85 (259)
T PRK06125          7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL   85 (259)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            567777775 4445544    344566999999998877776666654322347788888754321  111112468999


Q ss_pred             EECC
Q 043853          142 ISDP  145 (222)
Q Consensus       142 i~~p  145 (222)
                      +.+.
T Consensus        86 v~~a   89 (259)
T PRK06125         86 VNNA   89 (259)
T ss_pred             EECC
Confidence            8875

>PRK06172 short chain dehydrogenase; Provisional

Probab=82.28  E-value=11  Score=29.98  Aligned_cols=76  Identities=16%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~  137 (222)
                      ++++|=.|+ +|+++..    +++.+.+|+.++.++..++.+.+.++..+. ++.++.+|+.+..      .......++
T Consensus         7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            567887776 4444444    444567999999998877777666655442 4788888886532      111111236


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      +|+++.+.
T Consensus        85 id~li~~a   92 (253)
T PRK06172         85 LDYAFNNA   92 (253)
T ss_pred             CCEEEECC
Confidence            89998875

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=81.94  E-value=9.4  Score=30.38  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=48.2

Q ss_pred             CCCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch--------hhhcCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI--------GGDFGNA  134 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~--------~~~~~~~  134 (222)
                      +++++|=.| |+|.++..++    +.+.+|++++.++...+...+.++..+..++.++..|+...        ...+...
T Consensus        11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (247)
T PRK08945         11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ   89 (247)
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence            366777777 5666666444    34669999999988777666666555444566776666421        1111112


Q ss_pred             CCCCcEEEECC
Q 043853          135 FPKPDIVISDP  145 (222)
Q Consensus       135 ~~~fD~ii~~p  145 (222)
                      ..+.|.++.+.
T Consensus        90 ~~~id~vi~~A  100 (247)
T PRK08945         90 FGRLDGVLHNA  100 (247)
T ss_pred             hCCCCEEEECC
Confidence            24689998764

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=81.56  E-value=9.3  Score=30.16  Aligned_cols=101  Identities=22%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-C--eEEEEeCCHH----HHHHHHHHH--HHcCCCcEEEEeCchhchhhhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-K--HVYGYEVVPQ----AISDACRNA--KLNNISNATFVQGDLNKIGGDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~--~v~gvD~~~~----~i~~a~~n~--~~~~~~~v~~~~~d~~~~~~~~~~~~~~  137 (222)
                      ++.+|+|+-.|.|.++-.++... +  .|++.--.+.    ..+..+.+.  ++....|++.+-.+...+...     +.
T Consensus        48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p-----q~  122 (238)
T COG4798          48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP-----QK  122 (238)
T ss_pred             CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC-----Cc
Confidence            48999999999999999887642 2  6776643322    111122221  222234556665555544421     24


Q ss_pred             CcEEEECCC---------CCCc-cHHHHHHHHhCCCCcEEEEeeC
Q 043853          138 PDIVISDPN---------RPGM-HMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       138 fD~ii~~pp---------~~~~-~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      .|+++.+.-         ..+. ..-..+..+.|+|||+..+..+
T Consensus       123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH  167 (238)
T COG4798         123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH  167 (238)
T ss_pred             ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence            555544321         1122 2233334566999998876664

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=81.15  E-value=19  Score=30.53  Aligned_cols=89  Identities=10%  Similarity=0.048  Sum_probs=49.1

Q ss_pred             CCCCeEEEEecc-cchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||=+||| .|.+++.+++.   +.+++++|.++.-++.+++    .+.  ....  +  +....     ..+|++
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~~~--~--~~~~~-----~g~d~v  226 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TYLI--D--DIPED-----LAVDHA  226 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--eeeh--h--hhhhc-----cCCcEE
Confidence            347889989875 33334444442   3589999999988888764    222  1111  1  11111     148888


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      +=..........+...+..++++|.+.+
T Consensus       227 iD~~G~~~~~~~~~~~~~~l~~~G~iv~  254 (341)
T cd08237         227 FECVGGRGSQSAINQIIDYIRPQGTIGL  254 (341)
T ss_pred             EECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence            7543211122345556666777776543

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=80.94  E-value=10  Score=33.19  Aligned_cols=108  Identities=16%  Similarity=0.124  Sum_probs=56.0

Q ss_pred             CeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc--------CCCC-
Q 043853           69 EIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF--------GNAF-  135 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~--------~~~~-  135 (222)
                      .+|-=+|  -|+.++.    +|..+.+|+|+|+++..++..+.     |-  ..+..-+..+.....        ..+. 
T Consensus        10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G~--~~i~e~~~~~~v~~~v~~g~lraTtd~~   80 (436)
T COG0677          10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----GE--SYIEEPDLDEVVKEAVESGKLRATTDPE   80 (436)
T ss_pred             eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----Cc--ceeecCcHHHHHHHHHhcCCceEecChh
Confidence            3444444  5555543    34567799999999998887743     11  233333332211100        0000 


Q ss_pred             --CCCcEEEECCC--C-------CCccHHHHHHHHh-CCCCcEEEEee--CccchHhhHHHhhc
Q 043853          136 --PKPDIVISDPN--R-------PGMHMKLIKFLLK-LKAPRIVYVSC--NPATCARDLDYLCH  185 (222)
Q Consensus       136 --~~fD~ii~~pp--~-------~~~~~~~~~~l~~-l~~~~~v~~~~--~~~~~~~~~~~l~~  185 (222)
                        ..-|++++.-|  .       -++.....+.+.. |++|.++++.+  .|.+.......+++
T Consensus        81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle  144 (436)
T COG0677          81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE  144 (436)
T ss_pred             hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence              14566544433  1       1122334444443 78888887665  46777776666654

>PRK08339 short chain dehydrogenase; Provisional

Probab=80.69  E-value=12  Score=30.43  Aligned_cols=76  Identities=20%  Similarity=0.280  Sum_probs=47.5

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~  137 (222)
                      ++++|=.|++.| ++.    .+++.+.+|+.++.++..++.+.+.+....-.++.++.+|+.+..      .... ..+.
T Consensus         8 ~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~-~~g~   85 (263)
T PRK08339          8 GKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK-NIGE   85 (263)
T ss_pred             CCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-hhCC
Confidence            567776776544 444    444557799999999887777766654332224778888876542      1111 1246


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        86 iD~lv~na   93 (263)
T PRK08339         86 PDIFFFST   93 (263)
T ss_pred             CcEEEECC
Confidence            89988775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
2vs1_A	425	The Crystal Structure Of Pyrococcus Abyssi Trna (Ur		1e-27
2jjq_A	425	The Crystal Structure Of Pyrococcus Abyssi Trna (Ur		1e-27
2bh2_A	433	Crystal Structure Of E. Coli 5-Methyluridine Methyl		3e-22
1uwv_A	433	Crystal Structure Of Ruma, The Iron-Sulfur Cluster		1e-20
3bt7_A	369	Structure Of E. Coli 5-Methyluridine Methyltransfer		7e-13
1dus_A	194	Mj0882-A Hypothetical Protein From M. Jannaschii Le		9e-05
1kxz_A	192	Mt0146, The Precorrin-6y Methyltransferase (Cbit) H		4e-04

>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 23/200 (11%)
Query: 20  LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
            +GK  I E L  + + I  NSFFQTN++QA  L + + +         E +LD++ G G
Sbjct: 248 FWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE-----GEKILDMYSGVG 302
Query: 80  TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139
           T G+ LA+   +V G++    AI  A RN ++NN+ +A F      ++  D   +    D
Sbjct: 303 TFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEF------EVASDREVSVKGFD 355
Query: 140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK 199
            VI DP R G+H +L+K L + K   IVYVSCNP T ARD+  L            Y++ 
Sbjct: 356 TVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-----------DYRID 404
Query: 200 SLQPVDMFPHTPHIECVCLL 219
            +  +DMFPHTPH+E V  L
Sbjct: 405 EIVALDMFPHTPHVELVAKL 424

>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 23/200 (11%)
Query: 20  LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
            +GK  I E L  + + I  NSFFQTN++QA  L + + +         E +LD++ G G
Sbjct: 248 FWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE-----GEKILDMYSGVG 302
Query: 80  TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139
           T G+ LA+   +V G++    AI  A RN ++NN+ +A F      ++  D   +    D
Sbjct: 303 TFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEF------EVASDREVSVKGFD 355
Query: 140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK 199
            VI DP R G+H +L+K L + K   IVYVSCNP T ARD+  L            Y++ 
Sbjct: 356 TVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-----------DYRID 404
Query: 200 SLQPVDMFPHTPHIECVCLL 219
            +  +DMFPHTPH+E V  L
Sbjct: 405 EIVALDMFPHTPHVELVAKL 424

>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine Methyltransferase Ruma In Complex With Ribosomal Rna Substrate And S-Adenosylhomocysteine. Length = 433

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 32  GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSE-IVLDLFCGTGTIGLTLARWVK 90
           GL    S   F Q N   A V  K++       D   E  VLDLFCG G   L LA    
Sbjct: 253 GLRLTFSPRDFIQVN---AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309
Query: 91  HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM 150
            V G E VP  +    +NA+LN + N TF   +L +       A    D V+ DP R G 
Sbjct: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369
Query: 151 HMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHT 210
              +++ ++KL+  RIVYVSCNPAT ARD + L        +K  Y +  L  +DMFPHT
Sbjct: 370 -AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHT 420
Query: 211 PHIECVCLL 219
            H+E + L 
Sbjct: 421 GHLESMVLF 429

>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster Containing E. Coli 23s Ribosomal Rna 5-Methyluridine Methyltransferase Length = 433

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 32  GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSE-IVLDLFCGTGTIGLTLARWVK 90
           GL    S   F Q N   A V  K +       D   E  VLDLFCG G   L LA    
Sbjct: 253 GLRLTFSPRDFIQVN---AGVNQKXVARALEWLDVQPEDRVLDLFCGXGNFTLPLATQAA 309
Query: 91  HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM 150
            V G E VP  +    +NA+LN + N TF   +L +       A    D V+ DP R G 
Sbjct: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369
Query: 151 HMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHT 210
              + + ++KL+  RIVYVSCNPAT ARD + L        +K  Y +  L  +D FPHT
Sbjct: 370 -AGVXQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAXLDXFPHT 420
Query: 211 PHIECVCLL 219
            H+E   L 
Sbjct: 421 GHLESXVLF 429

>pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase Trma In Complex With 19 Nucleotide T-Arm Analogue Length = 369

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 31  RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK 90
           + + ++   NSF Q N   A +  +++E    +       +L+L+CG G   L LAR   
Sbjct: 180 KEMIYRQVENSFTQPN---AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD 236
Query: 91  HVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPK 137
            V   E+   +++ A  N   N+I N   ++              + N++ G    ++ +
Sbjct: 237 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-Q 295
Query: 138 PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYK 197
            + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K
Sbjct: 296 CETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THK 344
Query: 198 LKSLQPVDMFPHTPHIECVCLL 219
           ++ L   D FP+T H++C  LL
Sbjct: 345 VERLALFDQFPYTHHMQCGVLL 366

>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii Length = 194

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 26  ITETLRG--LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL 83
           + + LRG  L F+  +  F      +   +  L+E+    +DD    +LDL CG G IG+
Sbjct: 14  VEDILRGKKLKFKTDSGVFSYGKVDKGTKI--LVENVVVDKDDD---ILDLGCGYGVIGI 68
Query: 84  TLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
            LA  VK     ++  +AI  A  N KLNN+ N
Sbjct: 69  ALADEVKSTTXADINRRAIKLAKENIKLNNLDN 101

>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog From M. Thermoautotrophicum, P1 Spacegroup Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 68  SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNK 126
           +++ +D+ CGTG + L LA  V+ VY  +  P+AIS    N + + +  N T  +GD  +
Sbjct: 34  NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGDAPE 93
Query: 127 -----------IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPAT 175
                      + G  G    +   +I D  +PG  + +   LL+ K             
Sbjct: 94  ALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETK--------FEAXE 145
Query: 176 CARDLDY 182
           C RDL +
Sbjct: 146 CLRDLGF 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	1e-105
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	6e-91
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	3e-81
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	5e-33
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	1e-21
3ll7_A	410	Putative methyltransferase; methytransferase, stru	3e-15
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-11
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	2e-11
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	7e-11
3lpm_A	259	Putative methyltransferase; structural genomics, p	1e-10
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	1e-10
2b3t_A	276	Protein methyltransferase HEMK; translation termin	2e-10
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-10
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	3e-10
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	3e-10
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	4e-10
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	5e-10
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-09
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	2e-09
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-09
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	5e-09
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	5e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	7e-09
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	8e-09
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	8e-09
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	1e-08
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	1e-08
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	2e-08
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	2e-08
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	3e-08
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	4e-08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	4e-08
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	5e-08
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	5e-08
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	9e-08
3f4k_A	257	Putative methyltransferase; structural genomics, P	9e-08
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	9e-08
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	1e-07
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	1e-07
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	1e-07
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	2e-07
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-07
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-07
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-07
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	4e-07
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	7e-07
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	8e-07
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	1e-06
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-06
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-06
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	2e-06
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	2e-06
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	3e-06
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	4e-06
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	4e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	5e-06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	5e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	5e-06
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	6e-06
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	7e-06
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	9e-06
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	1e-05
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	1e-05
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	1e-05
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	1e-05
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	1e-05
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	2e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-05
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-05
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	2e-05
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	2e-05
2frn_A	278	Hypothetical protein PH0793; structural genomics,	3e-05
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	3e-05
3ege_A	261	Putative methyltransferase from antibiotic biosyn	3e-05
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-05
2esr_A	177	Methyltransferase; structural genomics, hypothetic	4e-05
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	4e-05
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	4e-05
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	5e-05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	5e-05
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	5e-05
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	1e-04
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	1e-04
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-04
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	2e-04
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	2e-04
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-04
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	3e-04
3lcc_A	235	Putative methyl chloride transferase; halide methy	3e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	4e-04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	4e-04
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	4e-04
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	5e-04
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	6e-04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	6e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	7e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	7e-04
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	7e-04

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425

 Score =  309 bits (795), Expect = e-105
 Identities = 79/219 (36%), Positives = 111/219 (50%), Gaps = 24/219 (10%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
             +VN S  + S G+ E   +GK  I E L  + + I  NSFFQTN++QA  L + + + 
Sbjct: 230 YWSVNRSKSDVSYGDIE-RFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSEL 288

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
                   E +LD++ G GT G+ LA+   +V G++    AI  A RN ++NN+     V
Sbjct: 289 VE-----GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEV 343

Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
             D               D VI DP R G+H +L+K L + K   IVYVSCNP T ARD+
Sbjct: 344 ASDREVS-------VKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDV 396

Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
             L            Y++  +  +DMFPHTPH+E V  L
Sbjct: 397 KML-----------DYRIDEIVALDMFPHTPHVELVAKL 424

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433

 Score =  272 bits (699), Expect = 6e-91
 Identities = 69/207 (33%), Positives = 97/207 (46%), Gaps = 12/207 (5%)

Query: 14  GEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLD 73
            E   T+ G+    ++  GL    S   F Q N    + +     +   ++    + VLD
Sbjct: 236 SEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ--PEDRVLD 292

Query: 74  LFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133
           LFCG G   L LA     V G E VP  +    +NA+LN + N TF   +L +       
Sbjct: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352

Query: 134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIK 193
           A    D V+ DP R G    +++ ++KL+  RIVYVSCNPAT ARD + L    G     
Sbjct: 353 AKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA-G----- 405

Query: 194 GCYKLKSLQPVDMFPHTPHIECVCLLE 220
             Y +  L  +DMFPHT H+E + L  
Sbjct: 406 --YTIARLAMLDMFPHTGHLESMVLFS 430

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369

 Score =  245 bits (629), Expect = 3e-81
 Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 30/236 (12%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKL 56
           +   N +V       +      +  I E L    + + ++   NSF Q N      + + 
Sbjct: 146 LRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEW 205

Query: 57  IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
             D           +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N
Sbjct: 206 ALDVTKGSKGD---LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN 262

Query: 117 ATFVQGDLNKIGGDFGNAFP------------KPDIVISDPNRPGMHMKLIKFLLKLKAP 164
              ++    +                      + + +  DP R G+  +  K +     P
Sbjct: 263 VQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYP 320

Query: 165 RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
           RI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H++C  LL 
Sbjct: 321 RILYISCNPETLCKNLETLSQT---------HKVERLALFDQFPYTHHMQCGVLLT 367

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score =  118 bits (297), Expect = 5e-33
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 26/222 (11%)

Query: 3   NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
            VN      +   E    + +     +      ++    +F       ++   +    + 
Sbjct: 18  KVNGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTP--EKIAEHIAGRVSQ 75

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQ 121
                 ++V+D FCG G   +  A     V   ++ P  I+ A  NA++  I++   F+ 
Sbjct: 76  SF--KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFIC 133

Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-----LKLKAPRIVYVSCNPATC 176
           GD   +      +F K D+V   P   G      +       +      I  +S      
Sbjct: 134 GDFLLL-----ASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITNN 188

Query: 177 ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 218
              + +L              +  +  +        IE   L
Sbjct: 189 I--VYFLPRN---------ADIDQVASLAGPGGQVEIEQNFL 219

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 86.9 bits (216), Expect = 1e-21
 Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 37/166 (22%)

Query: 33  LTFQISANSFFQTNTHQ-------AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL 85
           + + I    F +            A  + KL      L  D  ++V+D+ CG+G + + +
Sbjct: 1   MKYMIPDEEFIRREGVPITKEEIRAVSIGKL-----NLNKD--DVVVDVGCGSGGMTVEI 53

Query: 86  ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD----LNKIGGDFGNAFPKPD-I 140
           A+  K VY  + +  AI    +N    NI N   ++G     L+K+         + +  
Sbjct: 54  AKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKL---------EFNKA 104

Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPAT---CARDLDYL 183
            I      G    + K +  L   +I ++  N       A+ ++  
Sbjct: 105 FI------GGTKNIEKIIEILDKKKINHIVANTIVLENAAKIINEF 144

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 72.9 bits (178), Expect = 3e-15
 Identities = 30/181 (16%), Positives = 46/181 (25%), Gaps = 26/181 (14%)

Query: 41  SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQ 100
           S  Q+ +      YK     +    +G   V+DL  G G   + L          E   +
Sbjct: 74  SLEQS-SGAVTSSYK-----SRFIREG-TKVVDLTGGLGIDFIALMSKASQGIYIERNDE 126

Query: 101 AISDACRNAK--LNNISNATFVQGDLNKIGGDFGNAFP--KPDIVISDPNRPGMHMKLIK 156
               A  N    LN   +   + GD      ++        PD +  DP R     K   
Sbjct: 127 TAVAARHNIPLLLNEGKDVNILTGD----FKEYLPLIKTFHPDYIYVDPARRSGADK--- 179

Query: 157 FLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 216
                         C P       + L         K    +     +    H   +  V
Sbjct: 180 -------RVYAIADCEPDLIPLATELLPFC-SSILAKLSPMIDLWDTLQSLLHVQELHVV 231

Query: 217 C 217
            
Sbjct: 232 A 232

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 48  HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDA 105
            QAE L KL+             VL+  CG G   + LA+      +   ++ P+++  A
Sbjct: 20  EQAETLEKLLHHDTVYPPG--AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77

Query: 106 CRNAKLNNISNATFVQGDLNKIGGDFG-NAFPKPDIVIS 143
             N + N I N  F+Q ++  +   F  ++F   D +  
Sbjct: 78  RENTEKNGIKNVKFLQANIFSL--PFEDSSF---DHIFV 111

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 66  DGSEIVLDLFCGTGTI---GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
                VLD F G+GTI     +       VY  ++  + +  A   A  + +S   F++ 
Sbjct: 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRA 261

Query: 123 DLNKIGGDFGNAFPKPDIVISDP----------NRPGMHMKLIKFLLKLKAP--RIVYVS 170
           D           FP+ D ++++P              ++   ++  L L  P  R+  ++
Sbjct: 262 DA----RHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317

Query: 171 CNPA 174
             PA
Sbjct: 318 LRPA 321

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 15/59 (25%), Positives = 22/59 (37%)

Query: 69  EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
            IV+D   G G     LA   K VY ++V  QA+    +      I N   +      +
Sbjct: 24  SIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL 82

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 71  VLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIG 128
           ++DL  G G I L L+   K  + G E+  +    A R+   N + +    ++ DL KI 
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112

Query: 129 GDFGNAFPKPDIVISDP 145
                   + DIV  +P
Sbjct: 113 DLIPKE--RADIVTCNP 127

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 21/174 (12%)

Query: 55  KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI 114
             +E   G R       LD+F   G   L LA   + V   +   +A+  A  NA+LN +
Sbjct: 203 LYMERFRGER------ALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL 256

Query: 115 SNATFVQGDLNKIGGDFGNAFPKPDIVISDP-----NRPGMH------MKLIKFLLKLKA 163
            N   ++ +   +         + D+V+ DP      +  +        ++    +KL  
Sbjct: 257 GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK 316

Query: 164 PR-IVYVSCNPATCARDL--DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 214
              I+  +         L    +     D +       K  QP D  P   +  
Sbjct: 317 EGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQPFD-HPVLLNHP 369

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 56  LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNN 113
           L+E       +    +LDL  GTG I L LA       +   + +P A+S A RNA+   
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA 157

Query: 114 ISNATFVQGDLNKIGGDFGNAFPKP-DIVISDP 145
           I N   +Q D       F     +   +++S+P
Sbjct: 158 IKNIHILQSDW------FSALAGQQFAMIVSNP 184

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 59  DCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT 118
             A  R +    VLD+  G G   L  + +V+   G +   + +  A   A+   + N  
Sbjct: 15  KTAECRAE--HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVR 72

Query: 119 FVQGDLNKIGGDFG-NAFPKPDIVIS 143
           F QG    +   F  ++F   DI+  
Sbjct: 73  FQQGTAESL--PFPDDSF---DIITC 93

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN--ATFVQGDL--NK 126
           +LDL CG G IG+ LA  VK     ++  +AI  A  N KLNN+ N     V  DL  N 
Sbjct: 56  ILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115

Query: 127 IGGDFGNAFPKPDIVISDP 145
               +       + +I++P
Sbjct: 116 KDRKY-------NKIITNP 127

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 57.5 bits (140), Expect = 3e-10
 Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 56  LIEDC-AGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNN 113
           L+E     +R  G + V D+  G+G IG+++A++    V+  +V  +A+  A +NA+ + 
Sbjct: 111 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHG 170

Query: 114 ISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP 145
           +S+     +G+  +    F   F   ++++S+P
Sbjct: 171 VSDRFFVRKGEFLE---PFKEKFASIEMILSNP 200

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 16/122 (13%)

Query: 50  AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACR 107
           A  +  L       +    E + D+  G+G+I +   R         +E+  +       
Sbjct: 15  ALAISAL-----APKPH--ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67

Query: 108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP--R 165
           NA    +S+   VQ    +    F +    PD++            +     K      R
Sbjct: 68  NAINLGVSDRIAVQQGAPRA---FDDVPDNPDVIFI--GGGLTAPGVFAAAWKRLPVGGR 122

Query: 166 IV 167
           +V
Sbjct: 123 LV 124

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 71  VLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN----ATFVQGDL 124
           + DL  G G  G+ +A  ++   V  YE   +    A R+ +L + +        ++ D+
Sbjct: 40  IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99

Query: 125 NKIGGDFGNAFPKP---DIVISDP 145
                    A         VI +P
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMNP 123

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 13/96 (13%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
            LDL CG G   L LA     V  ++    +I++  R   + N+ N      DLN +   
Sbjct: 36  TLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL--T 93

Query: 131 FGNAFPKPDIVIS--------DPNRPGMHMKLIKFL 158
           F   +   D ++S            PG+   + +  
Sbjct: 94  FDRQY---DFILSTVVLMFLEAKTIPGLIANMQRCT 126

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 20  LYGKSNIT---ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFC 76
           LYGK   T   E        ++   + Q N  + + +  +  +         E+V+D+F 
Sbjct: 77  LYGKETETIHKEYGCLFKLDVAKIMWSQGNIEERKRMAFISNEN--------EVVVDMFA 128

Query: 77  GTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
           G G   + LA++ K   VY  E  P A    C N KLN ++N   +  D      D    
Sbjct: 129 GIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILAD----NRDVELK 184

Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN 172
                +++        H  L K    LK   +++    
Sbjct: 185 DVADRVIMGYV--HKTHKFLDKTFEFLKDRGVIHYHET 220

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 35  FQISANSFFQTNTH-QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVY 93
                + +  +  H +   L KL++  A L+ +    VLD+  G G +    A +VK V 
Sbjct: 7   HHHHHHMYVTSQIHAKGSDLAKLMQ-IAALKGNEE--VLDVATGGGHVANAFAPFVKKVV 63

Query: 94  GYEVVPQAISDACRNAKLNNISNATFVQGD 123
            +++    +  A    + N      +VQGD
Sbjct: 64  AFDLTEDILKVARAFIEGNGHQQVEYVQGD 93

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 22/158 (13%)

Query: 20  LYGKSNITETLR--GLTFQ--ISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLF 75
           L G++      +  G      I+   F      +   + K +          +++V+D+F
Sbjct: 152 LAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSL--------NDVVVDMF 203

Query: 76  CGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNA 134
            G G   +      K +Y  ++ P AI    +N KLN +      +  D+ ++       
Sbjct: 204 AGVGPFSIACKN-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------ 256

Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN 172
             K + VI +      H  + K L  ++   +++    
Sbjct: 257 -VKGNRVIMNL-PKFAHKFIDKALDIVEEGGVIHYYTI 292

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 53.2 bits (127), Expect = 5e-09
 Identities = 34/162 (20%), Positives = 48/162 (29%), Gaps = 24/162 (14%)

Query: 26  ITETLRGLTFQISANSFFQ---TNTHQAEVLY--KLIEDCAGLRDDGSEIVLDLFCGTGT 80
               L+G  F+       Q        +E+L+    + D  G        V DL  GTG 
Sbjct: 11  ALSKLKG--FKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKV------VADLGAGTGV 62

Query: 81  IGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139
           +         K V   EV  +A+     N             GD+++            D
Sbjct: 63  LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFNSRV-------D 114

Query: 140 IVISDPNR-PGMHMKLIKFLLKLKAP-RIVYVSCNPATCARD 179
           IVI +P            FLLK      +VY         R 
Sbjct: 115 IVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRR 156

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 42  FFQTNTHQA----EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYE 96
           FF     Q     EV  K +     L +    ++ D+ CGTG   + LA  V   V G +
Sbjct: 19  FFSNMERQGPGSPEVTLKALSFIDNLTEK--SLIADIGCGTGGQTMVLAGHVTGQVTGLD 76

Query: 97  VVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFG-NAFPKPDIVISDPNRPGMHMKL 154
            +   I    RNA+ + + N  T + G ++ +   F        D++ S       ++  
Sbjct: 77  FLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL--PFRNEEL---DLIWS--EGAIYNIGF 129

Query: 155 IKFL 158
            + L
Sbjct: 130 ERGL 133

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 53.8 bits (129), Expect = 8e-09
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 26  ITETLRG--LTFQISANSFFQTNTHQ-AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG 82
            +  + G   TF      F        + +L + +++  G        VLDL  G G + 
Sbjct: 189 FSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALT 248

Query: 83  LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142
           L LAR    V G E    ++    +  + N +            +  +      + DI++
Sbjct: 249 LPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEE-----ARFDIIV 303

Query: 143 SDPNRP 148
           +  N P
Sbjct: 304 T--NPP 307

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 13/136 (9%)

Query: 14  GEEEYTLYGKSNITETLR--GLTFQISANSFFQT--NTHQAEVLYKLIEDCAGLRDDGSE 69
            E    +YG+      +   GL F I      +T     Q E                  
Sbjct: 162 PERVGVVYGEVPEVLEVEEDGLRFPIPLALAQKTGYYLDQRENRRLFEAMVRPGER---- 217

Query: 70  IVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129
            VLD++   G   L  AR   +    +   +A+    + A    +       G+      
Sbjct: 218 -VLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGL-RVDIRHGEALPTLR 275

Query: 130 DFGNAFPKPDIVISDP 145
                F     V+ DP
Sbjct: 276 GLEGPF---HHVLLDP 288

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 14/129 (10%)

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATF 119
                  +++ +D+ CGTG + L LA  V+ VY  +  P+AIS    N + + +  N T 
Sbjct: 27  CLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL 86

Query: 120 VQGDLNKIGGDFGNAFPKPDIV---ISDPNRPGMHMKLIKFLLKLKAP--RIVYVSCNPA 174
           ++GD      +     P  DI     S          +++ +     P  RI+  +    
Sbjct: 87  MEGDAP----EALCKIPDIDIAVVGGSGGELQE----ILRIIKDKLKPGGRIIVTAILLE 138

Query: 175 TCARDLDYL 183
           T    ++ L
Sbjct: 139 TKFEAMECL 147

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 10/110 (9%)

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNA-KLNNISNATF 119
           A L     E++ D+  G+G++ +            E     I +  +N            
Sbjct: 49  AALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRA 108

Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP--RIV 167
           VQG             P P+ V            L   L +  AP  RIV
Sbjct: 109 VQGTAP----AALADLPLPEAVFIGGGGSQ---ALYDRLWEWLAPGTRIV 151

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 71  VLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIG 128
           VLD+F  TG   +  A      V G +  P+AI  A  NAKLN + +   F+ G   +  
Sbjct: 221 VLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM 280

Query: 129 GDFGNAFPKPDIVISDP-----NRPGMH------MKLIKFLLKLKAPRIVYVSCNPATCA 177
                   K DIV+ DP     +   +         +    L L     + V+C   +C+
Sbjct: 281 EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC---SCS 337

Query: 178 RDLDY 182
           + +D 
Sbjct: 338 QHVDL 342

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 26/202 (12%)

Query: 32  GLTFQISANSFFQT--NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW- 88
           G+   +      +T     Q +            R      VL+ F  TG   ++     
Sbjct: 189 GMKLLVDIQHGHKTGYYLDQRDSRLATRRYVENKR------VLNCFSYTGGFAVSALMGG 242

Query: 89  VKHVYGYEVVPQAISDACRNAKLNNI--SNATFVQGDLNKIGGDFGNAFPKPDIVISDP- 145
              V   +   +A+  A +N +LN +  S A FV+ D+ K+   + +   K D+++ DP 
Sbjct: 243 CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPP 302

Query: 146 ----NRPGM------HMKLIKFLLKLKAP--RIVYVSCNPATCARDL-DYLCHGVGDQNI 192
               N+  +      +  +    ++L      ++  SC+    +      +     D   
Sbjct: 303 KFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362

Query: 193 KGCYKLKSLQPVDMFPHTPHIE 214
              +  +  Q  D  P      
Sbjct: 363 DVQFIEQFRQAAD-HPVIATYP 383

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 71  VLDLFCGTGTIGLTLA-RWVK-HVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKI 127
           VLD  CG+GTI + LA R     + G E   + +  A  NA    + +   F+QGD    
Sbjct: 221 VLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT-- 278

Query: 128 GGDFGNAFPKPDIVISDP 145
                      D  IS+ 
Sbjct: 279 --QLSQYVDSVDFAISNL 294

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 46  NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDA 105
           + +    +   +     L +     ++D  CG GT    L+++   V G +V   A+  A
Sbjct: 36  DANVERAVVVDLPRFELLFNPELP-LIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIA 94

Query: 106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142
            +     NIS   +   D               D  I
Sbjct: 95  AKENTAANIS---YRLLDGLVPEQAAQIHSEIGDANI 128

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 51.1 bits (122), Expect = 4e-08
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 39  ANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVV 98
             ++   N+ +     + +E            VLDL CG G     L  +   V G ++ 
Sbjct: 10  FPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDIS 69

Query: 99  PQAISDACRNAKLNNISNATFVQGDLNKIGGDF-GNAFPKPDIVIS 143
              I  A   AK    SN  F+ GD  K+   F    F   D VI 
Sbjct: 70  EDMIRKAREYAKSRE-SNVEFIVGDARKL--SFEDKTF---DYVIF 109

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 51.5 bits (123), Expect = 4e-08
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 56  LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLN 112
           L+     +       ++D  CG G +GL L   +       G +     +++A    +L 
Sbjct: 13  LVNTVWKITKPVH--IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL 70

Query: 113 NISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143
              ++ F++GD  +I  +  + +   DI I 
Sbjct: 71  PY-DSEFLEGDATEI--ELNDKY---DIAIC 95

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
           VLD+ CG G     L+R      G ++    I       +  ++   +F++GDL+ +   
Sbjct: 57  VLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDL---SFIKGDLSSL--P 111

Query: 131 FG-NAFPKPDIVIS 143
           F    F   + +++
Sbjct: 112 FENEQF---EAIMA 122

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNAT 118
           + LR     ++ D+  G+ ++ +  +  +    ++  E  PQ +     N K     N T
Sbjct: 34  SKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVT 93

Query: 119 FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIV 167
            V+    +   D     P PD V    +   +   +     +LK+   IV
Sbjct: 94  LVEAFAPEGLDD----LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIV 139

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 49.9 bits (119), Expect = 9e-08
 Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 11/96 (11%)

Query: 48  HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACR 107
           +        +E        G   VL+L  GTG     L+     V   +   + I     
Sbjct: 29  YMDSAAPAALERLRAGNIRGD--VLELASGTGYWTRHLSGLADRVTALDGSAEMI----A 82

Query: 108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143
            A  + + N  F Q DL          +   D V  
Sbjct: 83  EAGRHGLDNVEFRQQDLFDW--TPDRQW---DAVFF 113

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 55  KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNN 113
           K +     L DD    + D+ CGTG   L LA +VK  + G ++ P  I     NA   N
Sbjct: 36  KAVSFINELTDD--AKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN 93

Query: 114 IS-NATFVQGDLNKIGGDFG-NAFPKPDIVISDPNRPGMHMKLIKFL 158
            +     + G ++ +   F        D++ S       ++   + +
Sbjct: 94  CADRVKGITGSMDNL--PFQNEEL---DLIWS--EGAIYNIGFERGM 133

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 50.5 bits (120), Expect = 9e-08
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 59  DCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLN--- 112
              G  +     VLDL CGTG      ++ V     V G +++   +  A +  + +   
Sbjct: 77  PADGSLEG--ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK 134

Query: 113 -----NISNATFVQGDLNKIGGDFGNAFPKP--DIVIS 143
                + SN  F++G +  +        P    DIVIS
Sbjct: 135 FFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS 172

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 51  EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNA 109
             L K++ D           VLDL CG G   +  A    K V G ++  + +++A R  
Sbjct: 34  HELKKMLPDFNQKT------VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKT 87

Query: 110 KLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143
               +    + Q  +  I  +  +A+   ++V+S
Sbjct: 88  TSPVV---CYEQKAIEDIAIE-PDAY---NVVLS 114

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 71  VLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
           V+D+  G+G I +++A       V   ++   A++ A RNA+        +   D  +  
Sbjct: 34  VIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWL 92

Query: 129 GDFGNAFPKPDIVISDP 145
            +          ++S+P
Sbjct: 93  IERAERGRPWHAIVSNP 109

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 29/189 (15%)

Query: 8   VGNTSVGEEEYTLYGKSNITETL----RGLTFQISANSFFQTN--THQAEVLYKLIEDCA 61
            G+T         + K  + ET      G+ F     +F        Q    ++ +++  
Sbjct: 90  TGDTDEDGMGRWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIVH-WEWLKNAV 148

Query: 62  GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT--F 119
              D   + VL+LF  TG   L  A     V   +   +AI  A  N  L  +  A   +
Sbjct: 149 ETADRPLK-VLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRW 207

Query: 120 VQGDLNKIGGDF---GNAFPKPDIVISDP----NRPGM--------HMKLIKFLLKLKAP 164
           +  D  K        G+ +   DI+++DP                    ++    ++ +P
Sbjct: 208 ICEDAMKFIQREERRGSTY---DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP 264

Query: 165 R-IVYVSCN 172
           + +  V   
Sbjct: 265 KALGLVLTA 273

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 49  QAEVLYKLIED-CAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDAC 106
           Q +V  +LI    AG        VL+LF  T    +  A          ++  ++ + + 
Sbjct: 199 QRQVRNELINGSAAGKT------VLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSL 252

Query: 107 RNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDP-----NRPGM------HMK 153
            + + N++   N   V  D+              DI+I DP     N+  +      + K
Sbjct: 253 AHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHK 312

Query: 154 LIKFLLKLKAPRIVYVSCNPATCAR--DLDYLCHGVGDQNIKGCYKLKSL--QPVDMFPH 209
           LI+  L++ +   + ++    T A    +      +     K  +    L   P D F  
Sbjct: 313 LIRQGLEILSENGLIIAS---TNAANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSD-FAV 368

Query: 210 TPHIE 214
               E
Sbjct: 369 NVQDE 373

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 46  NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISD 104
              +   LY+ ++ C     D +  VLD   G     L++        YG E+    +  
Sbjct: 4   TIIRQPQLYRFLKYCNESNLDKT--VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKK 61

Query: 105 ACRNAKLNNISNATFVQGDLNKIGGDFG-NAFPKPDIVIS 143
           A   ++ NN       +GD+ K+   F   +      V S
Sbjct: 62  AENFSRENNF-KLNISKGDIRKL--PFKDESM---SFVYS 95

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 71  VLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNK 126
           V  + CG  +  L L         + G +  P+A+  A R A  + ++   T  + D  K
Sbjct: 122 VASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK 181

Query: 127 IGGDFGNAFPKPDIVIS 143
           +  D    +   D++ S
Sbjct: 182 L--DTREGY---DLLTS 193

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN-KIGG 129
           VL+  CG G               Y+  P+ +  A  NA      +A   + +   ++  
Sbjct: 52  VLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAP-----HADVYEWNGKGELPA 106

Query: 130 DFGNAFPKPDIVIS 143
             G  F    +++S
Sbjct: 107 GLGAPF---GLIVS 117

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 59  DCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN- 116
           +  G+        +D+  G G + + LA+     +   +        A +N    N+++ 
Sbjct: 38  NRFGITAG---TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR 94

Query: 117 ATFVQGDLNKIGGDFG-NAFPKPDIVIS 143
              VQGD++ I      N     D+++S
Sbjct: 95  IQIVQGDVHNI--PIEDNYA---DLIVS 117

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 44  QTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAIS 103
             ++   +    L+     L     E +LDL CGTG +   +A+    V G +     I 
Sbjct: 37  DKHSFVWQYGEDLL---QLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIE 93

Query: 104 DACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143
            A +N       +  F   D               D V S
Sbjct: 94  KARQNY-----PHLHFDVADARNF--RVDKPL---DAVFS 123

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 51  EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRN 108
           +  Y +    A +  +  +I LDL  GTG +   L            ++  + + +  +N
Sbjct: 29  DDFYGVSVSIASVDTENPDI-LDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML-EIAKN 86

Query: 109 AKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143
            +        +++ D +K   DF   +   D+V+S
Sbjct: 87  -RFRGNLKVKYIEADYSKY--DFEEKY---DMVVS 115

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 41  SFFQTNTHQAEVLYKLIEDC-AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP 99
           SF Q    Q + ++   ED    + +     VL+   GTG +   L    + VYG E   
Sbjct: 18  SFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSR 77

Query: 100 QAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143
           +        AK       +  +GD      +   +    D ++S
Sbjct: 78  EMR----MIAKEKLPKEFSITEGDFLSF--EVPTSI---DTIVS 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 27/221 (12%), Positives = 59/221 (26%), Gaps = 69/221 (31%)

Query: 10  NTSVGEEEYTLYGK---------------SNITETLRGLTFQISANSFFQTNTHQAEVLY 54
           +   GE +Y  Y                  ++ +  + +  +   +    +         
Sbjct: 8   DFETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTL 65

Query: 55  KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI 114
           +L      L     E+V   F                   Y+ +   I    R   +   
Sbjct: 66  RLF-WT--LLSKQEEMV-QKFVEEV-----------LRINYKFLMSPIKTEQRQPSMMTR 110

Query: 115 SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
               +++   +++  D    F K ++     +R   ++KL + LL+L+  + V +     
Sbjct: 111 M---YIE-QRDRLYND-NQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLI----- 155

Query: 175 TCARDLDYLCHGVGDQNIKGCYK-------LKSLQPVDMFP 208
                      GV      G  K         S +      
Sbjct: 156 ----------DGVL-----GSGKTWVALDVCLSYKVQCKMD 181

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNA 117
            GL++     VLD+  G G     L++ V     VY  +V  + ++ A        + N 
Sbjct: 33  FGLKEG--MTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNV 90

Query: 118 TFVQGDLNKI 127
             ++ + NKI
Sbjct: 91  EVLKSEENKI 100

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 12/86 (13%)

Query: 65  DDGSEIVLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAKLNNISN-ATFVQ 121
             G E+ L++  G   +   +A    +  V   EV  +    A RN + NN +       
Sbjct: 53  LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSN 112

Query: 122 GDL--NKIGGDFGNAFPKPDIVISDP 145
           G +    + G F       D++ S P
Sbjct: 113 GGIIKGVVEGTF-------DVIFSAP 131

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
           L       VLD+ CG G + +  AR      +   +V   A+  +      N +      
Sbjct: 192 LTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG-EVF 250

Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDP 145
             +  +++ G F       D++IS+P
Sbjct: 251 ASNVFSEVKGRF-------DMIISNP 269

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
           VLDL CGTG   L LA     V G ++  + +  A R AK  N+    F+QGD+ +I   
Sbjct: 45  VLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI--A 101

Query: 131 FGNAFPKPDIVIS 143
           F N F   D V  
Sbjct: 102 FKNEF---DAVTM 111

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 51  EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNA 109
             L  ++ +  GLR      ++DL CG G            +V G ++  + ++ A    
Sbjct: 33  PALRAMLPEVGGLR------IVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAG 86

Query: 110 KLNNISNATFVQGDLNKIGGDFG-NAFPKPDIVIS 143
               I   T+ + DL+K+      ++F   D+  S
Sbjct: 87  PDTGI---TYERADLDKL--HLPQDSF---DLAYS 113

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 69  EIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRN-AKLNNISNATFVQGD 123
           + V+D  CG G     LA  V     V+G+++  +AI++  +    LN I   T ++  
Sbjct: 24  DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG 82

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 24/146 (16%)

Query: 59  DCAGLRDDGSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKL----- 111
           D   + DD  ++ +DL  G G + L +A     KH YG E        A    +      
Sbjct: 167 DEIKMTDD--DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM 224

Query: 112 ----NNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR---PGMHMKLIKFLLKLKA- 163
                  +  T  +GD      ++        ++  + N    P +  +L +    +K  
Sbjct: 225 KWYGKKHAEYTLERGDFLSE--EWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEG 281

Query: 164 PRIV----YVSCNPATCARDLDYLCH 185
            RIV    +   N    +R+L  +  
Sbjct: 282 GRIVSSKPFAPLNFRINSRNLSDIGT 307

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN---NISNA 117
           L ++    ++DL CG G IGLTL        V   +  P A++ +  N + N    +   
Sbjct: 218 LPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRC 277

Query: 118 TFVQGDL--NKIGGDFGNAFPKPDIVISDP 145
            F+  +         F       + V+ +P
Sbjct: 278 EFMINNALSGVEPFRF-------NAVLCNP 300

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 70  IVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRN-AKLNNISNATFVQGDLNKI 127
           + LDL+ G+G + +  ++R +      E    A+     N A           + D N+ 
Sbjct: 47  MALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA 106

Query: 128 GGDFGNAFPKPDIVISDPNRP---GMHMKLIKFLLKLK 162
              F     + D+V+ DP  P      +  ++ +L+ +
Sbjct: 107 LEQFYEEKLQFDLVLLDP--PYAKQEIVSQLEKMLERQ 142

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 57  IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
           I +     +   +  LDL CGTG +   L    K+ +  ++  + +S+A    +   +  
Sbjct: 27  IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-K 85

Query: 117 ATFVQGDLNKIGGDFGNAFPKPDIVIS 143
                 D++ +  +    F   D++  
Sbjct: 86  PRLACQDISNL--NINRKF---DLITC 107

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 71  VLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NKIG 128
           V D+  G+G + +   +   K V   ++  ++++ A  NA LN I +    +  L   + 
Sbjct: 64  VADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVD 123

Query: 129 GDFGNAFPKPDIVI 142
           G F       D+++
Sbjct: 124 GKF-------DLIV 130

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 23/123 (18%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNIS----- 115
           L+   ++ V+DL CG G +   L +    + + G +V    +  A    K++ +      
Sbjct: 25  LKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRK 84

Query: 116 NATFVQGDLNKIGGDFGNAFPKPDIVIS--------DPNRPGMHMKLIKFLLKLKAPRIV 167
             +  Q  L          F   D            +           K L +   P+ V
Sbjct: 85  RISLFQSSLV----YRDKRFSGYDAATVIEVIEHLDENRLQ----AFEKVLFEFTRPQTV 136

Query: 168 YVS 170
            VS
Sbjct: 137 IVS 139

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 17/121 (14%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLAR---WVKHVYGYEVVPQAISDACRNAKLN------N 113
           +R+  +  ++D  CG+G++  +L      ++ + G ++ P+ ++ A +   +       N
Sbjct: 717 IRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN 776

Query: 114 ISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKFLLKLKAPRIVYV 169
           + +AT   G +     +F +     DI                +  + +L L  P+++ V
Sbjct: 777 VKSATLYDGSIL----EFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832

Query: 170 S 170
           S
Sbjct: 833 S 833

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 21/79 (26%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVV-----PQAISDACRNAKLNNISNATFVQGDLN 125
           +LD  CG G IG  L++      G++V+     P  I  A ++        A +V GDL+
Sbjct: 50  ILDAGCGQGRIGGYLSK-----QGHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLS 99

Query: 126 KIGGDFG-NAFPKPDIVIS 143
                     F   D+++S
Sbjct: 100 VD--QISETDF---DLIVS 113

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKL-----NNIS 115
           L+   +  V+DL CG G +   L +  + + + G +V  +++  A           N   
Sbjct: 25  LKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWE 84

Query: 116 NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHM------KLIKFLLKLKAPRIVYV 169
               +QG L      F       D           H+         + L +   P+IV V
Sbjct: 85  RLQLIQGALTYQDKRFH----GYDAATV--IEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138

Query: 170 S 170
           +
Sbjct: 139 T 139

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 9/112 (8%)

Query: 35  FQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSE--IVLDLFCGTGTIGLTLARWVKHV 92
              +A ++ +   H  EV  ++    A       E  + L+L  GTG I L L       
Sbjct: 5   LLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRY 64

Query: 93  YGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG-NAFPKPDIVIS 143
              +     +    +            VQ D   I       +      VI 
Sbjct: 65  IALDADAAMLEVFRQKIA-GVDRKVQVVQADARAI--PLPDESV---HGVIV 110

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Length = 202

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 71  VLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129
            LD F G+G +GL  L+R+       E+         +N       NA  V  +      
Sbjct: 58  CLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA 117

Query: 130 DFGNAFPKPDIVISDPNRP---GMHMKLIKFLLK---LKAPRIVYV 169
             G      +IV  DP  P   G+  + I  L     L    ++YV
Sbjct: 118 QKGTPH---NIVFVDP--PFRRGLLEETINLLEDNGWLADEALIYV 158

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 53  LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNA 109
            YK+I++     D   ++++D+ CG GT  L +A+ +   + + G ++    I  A    
Sbjct: 25  FYKMIDE---YHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIK 81

Query: 110 K--LNNISNATFVQGDLNKIGGDFGNAFPKPD 139
           +   +   N +F     +     F  A     
Sbjct: 82  EGSPDTYKNVSFKISSSDDF--KFLGADSVDK 111

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 69  EIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLN 125
            I+LD+      + + L     +K     EVV      A +N + + +         +  
Sbjct: 17  AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL 76

Query: 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160
                F        I I+     GM  +LI  +L+
Sbjct: 77  AA---FEETDQVSVITIA-----GMGGRLIARILE 103

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Length = 258

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 23/102 (22%), Positives = 29/102 (28%), Gaps = 10/102 (9%)

Query: 56  LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP-------QAISDACRN 108
           LI             V D   G G     LA     V  +E  P         I  A  N
Sbjct: 74  LIAKAVNHT--AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLN 131

Query: 109 AKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG 149
            +  +  +      G+  +          KPDIV  DP  P 
Sbjct: 132 PETQDTAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPE 173

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 17/78 (21%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVV-----PQAISDACRNAKLNNISNATFVQGDLN 125
           + D+ CGTGT  L LA        YEV       + +  A   A   N  +  F   D+ 
Sbjct: 37  IADIGCGTGTATLLLAD------HYEVTGVDLSEEMLEIAQEKAMETNR-HVDFWVQDMR 89

Query: 126 KIGGDFGNAFPKPDIVIS 143
           ++  +        D +  
Sbjct: 90  EL--ELPEPV---DAITI 102

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 20/124 (16%)

Query: 43  FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQA 101
           + T+   A      I +   +       V+D   G G +         + V  +++ P A
Sbjct: 30  YPTDASTAAYFLIEIYNDGNIGG---RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDA 86

Query: 102 ISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKF 157
           I  A RN    N     F+  D+++I G       K D  I +P             I  
Sbjct: 87  IETAKRNCGGVN-----FMVADVSEISG-------KYDTWIMNPPFGSVVKHSDRAFIDK 134

Query: 158 LLKL 161
             + 
Sbjct: 135 AFET 138

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 71  VLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL 124
           VLDL C  G + L++A       + G ++  + I  A +N +             L
Sbjct: 50  VLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTL 105

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 69  EIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLN 125
           E + D+      +     +          EVV      A +  + + ++      +G+  
Sbjct: 23  ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGL 82

Query: 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160
            +            IVI+     GM   LI+ +L+
Sbjct: 83  AV---IEKKDAIDTIVIA-----GMGGTLIRTILE 109

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Length = 258

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 12/105 (11%)

Query: 56  LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP---QAISDACRNAKLN 112
            +    G++ D    V+D   G G     LA     V   E  P     + D       +
Sbjct: 77  AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYAD 136

Query: 113 N------ISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH 151
                        +            +  P+P +V  DP  P   
Sbjct: 137 AEIGGWLQERLQLIHASSLTA---LTDITPRPQVVYLDPMFPHKQ 178

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 71  VLDLFCGTGTIG-LTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
            + +  G   +  + L+      V   E+ P     + +  +   +     + GD
Sbjct: 126 AVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 57  IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
           I D    R   +  +LD+ CGTGT      +      G E+    ++ A +        +
Sbjct: 30  IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLP-----D 84

Query: 117 ATFVQGDLNKIGGDFGNAFPKPDIVIS 143
           AT  QGD+       G  F     V+S
Sbjct: 85  ATLHQGDMRDF--RLGRKF---SAVVS 106

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 11/95 (11%)

Query: 69  EIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLN 125
             +LD+      + + L +          EVV      A +N   + +++       +  
Sbjct: 23  ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN-- 80

Query: 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160
                 G +  +    I      GM  +LI  +L 
Sbjct: 81  ------GLSAFEEADNIDTITICGMGGRLIADILN 109

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 6/98 (6%)

Query: 69  EIVLDLFCGTGTIGLTLARWVKH--VYG----YEVVPQAISDACRNAKLNNISNATFVQG 122
            + +DL  G G     LA   ++    G     E +        +      +SN  FV  
Sbjct: 26  RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIA 85

Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160
               +  +  N      I+          +K  + +L 
Sbjct: 86  AAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILS 123

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 69  EIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNK 126
           E+V+D+F G G + L +A + K  V   E  P        N  LN +    +    D   
Sbjct: 127 ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD--- 183

Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN 172
              DF        I++        H  + K L   K   I++    
Sbjct: 184 -NRDFPGENIADRILMGYV--VRTHEFIPKALSIAKDGAIIHYHNT 226

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 18/81 (22%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVV-----PQAISDA---CRNAKLNNISNATFVQG 122
           VL+L  G G +            G+EV         ++        A  +     T VQG
Sbjct: 86  VLELAAGMGRLTFPFLD-----LGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140

Query: 123 DLNKIGGDFGNAFPKPDIVIS 143
           D++         F     V+ 
Sbjct: 141 DMSAF--ALDKRF---GTVVI 156

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 9/85 (10%)

Query: 39  ANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVV 98
              + QT      ++  +I     L      ++ D+  GTG   + LA     VY  E  
Sbjct: 9   GKQYSQTRVPDIRIVNAIINL---LNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPS 65

Query: 99  PQAISDACRNAKLNNISNATFVQGD 123
                 A  +          +  G 
Sbjct: 66  IVMRQQAVVHP------QVEWFTGY 84

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI 114
           + +    +++D  CG G     L  +   +Y  ++   A+ +     K +++
Sbjct: 13  IFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEV--KEKFDSV 62

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 71  VLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRN-AKLNNISNATFVQGDLNKIG 128
           VLDLF G+G + +  ++R +      E   +A +    N       +  T ++ +  +  
Sbjct: 35  VLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI 94

Query: 129 GDFGNAFPKPDIVISDP 145
                 F   D+V  DP
Sbjct: 95  DCLTGRF---DLVFLDP 108

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 57  IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
           +          +  +LD+ CGTG     LA     V G E+    ++ A R        +
Sbjct: 40  LAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-----D 94

Query: 117 ATFVQGDLNKIGGDFGNAFPKPDIVIS 143
           A    GD+       G  F     V  
Sbjct: 95  AVLHHGDMRDF--SLGRRF---SAVTC 116

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 14/98 (14%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
           VLDL CG G   L L+     V  ++    +I+      +  N+ N +    D+N    +
Sbjct: 124 VLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAA--N 180

Query: 131 FGNAFPKPDIVIS--------DPNRPGMHMKLIKFLLK 160
               +   D ++S            P +   + +    
Sbjct: 181 IQENY---DFIVSTVVFMFLNRERVPSIIKNMKEHTNV 215

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVV-----PQAISDACRNAKLN--NIS 115
           LR  G   VLD+ CGTG   + L        G+ V       + +  A +         +
Sbjct: 53  LRQHGCHRVLDVACGTGVDSIMLVEE-----GFSVTSVDASDKMLKYALKERWNRRKEPA 107

Query: 116 NATFVQGDLNKIGGDFGNAFPKP-DIVIS 143
              +V  + N +  D         D VI 
Sbjct: 108 FDKWVIEEANWLTLDKDVPAGDGFDAVIC 136

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 43  FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH--VYGYEVVPQ 100
           F    H   +   ++       DD +  VLD+ CG G      A  +     +G +V   
Sbjct: 61  FLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV 120

Query: 101 AISDACRNAKLNNISNATFVQGDL 124
           AI  A +          TF     
Sbjct: 121 AIKAAAKRYP-----QVTFCVASS 139

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 18/120 (15%)

Query: 40  NSFFQTNTHQ--AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH-----V 92
                  T     +VL  + +   G      E++ D   G+G +  T++    +     +
Sbjct: 292 GHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQI 351

Query: 93  YGYEVVPQAISDACRNAK------LNNISNATFVQGD-LNKIGGDFGNAFPKPDIVISDP 145
           +  ++    +              +++ +  T    D  +    DF N      +V+ +P
Sbjct: 352 WANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV----SVVVMNP 407

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 25/144 (17%), Positives = 40/144 (27%), Gaps = 13/144 (9%)

Query: 69  EIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
             V D    +G   +        V+  Y  ++  +AI     N KLNNI    +    + 
Sbjct: 54  VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGME 113

Query: 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCH 185
                        D V  DP   G  +  I+          +      +  A D   L  
Sbjct: 114 ANFFLRKEWGFGFDYVDLDP--FGTPVPFIE-----SVALSMKRGGILSLTATDTAPLS- 165

Query: 186 GVGDQNIKGCYKLKSLQPVDMFPH 209
             G        +  +    + F H
Sbjct: 166 --GTYPKTCMRRYMARPLRNEFKH 187

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 15/108 (13%)

Query: 38  SANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGY 95
           SA  + +    +      L+     +  +      DL CG G     L        + G 
Sbjct: 7   SAQQYLKFEDERTRPARDLLAQ---VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGI 63

Query: 96  EVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143
           +     +  A          N  F + DL              D++ +
Sbjct: 64  DSDDDMLEKAADRL-----PNTNFGKADLATW--KPAQKA---DLLYA 101

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 69  EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKI 127
           + VL+   G+G +   L+     V+ +E V +    A +N K  N+  N  F   D    
Sbjct: 93  KRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA 152

Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171
               G           D   P  +++ +   L   AP    +  
Sbjct: 153 EVPEG----IFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPT 192

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 28  ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR 87
             L+G+   I  N    T      ++  L+E     + + S  +LD  CGT  +  T+  
Sbjct: 94  ALLKGMKHGIQVNHQM-TPDSIGFIVAYLLEKVIQKKKNVS--ILDPACGTANLLTTVIN 150

Query: 88  WVK-------HVYGYEVVPQAISDACRNAKLNNISNATFVQGD--LNKIGGDFGNAFPKP 138
            ++       H  G +V    IS A   A L      T +  D   N +           
Sbjct: 151 QLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPV------- 202

Query: 139 DIVISDP 145
           D+VISD 
Sbjct: 203 DVVISDL 209

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 16/129 (12%)

Query: 48  HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACR 107
           HQ+EV   L +  + L       VL   CG       L+    HV G E+   A+     
Sbjct: 3   HQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFT 62

Query: 108 NAKLNN------------ISNATFVQGDLNKI----GGDFGNAFPKPDIVISDPNRPGMH 151
                                     GD   +     G     + +  ++    +    +
Sbjct: 63  ERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERY 122

Query: 152 MKLIKFLLK 160
           ++ ++ L+ 
Sbjct: 123 VQHLEALMP 131

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL 124
           +LD+  GTG     LA     + G E   + +  A +        + TF  G +
Sbjct: 45  ILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH-----PSVTFHHGTI 93

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 71  VLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDAC-RNAKLNNISNATFVQGDLNKIG 128
           VLDL CG G   L   R  +   YG ++   +I+DA  R   +       F   D     
Sbjct: 68  VLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 127

Query: 129 GDFGNAFP 136
            D G  F 
Sbjct: 128 MDLGKEFD 135

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 12/78 (15%)

Query: 71  VLDLFCGTG--TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
           V+DLF G G  ++G   A +       E     I     N    N   +  VQ D++ + 
Sbjct: 5   VIDLFSGVGGLSLGAARAGF-DVKMAVE-----IDQHAINTHAINFPRSLHVQEDVSLLN 58

Query: 129 GD----FGNAFPKPDIVI 142
            +    F       D +I
Sbjct: 59  AEIIKGFFKNDMPIDGII 76

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDL 124
            L   CG G   + +A   + V G ++   A++ A      +  +   +FV+ D+
Sbjct: 70  ALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV 124

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 20/98 (20%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
           VLD+ C +G +G  +      V G E  P+A   A    KL+++        D+      
Sbjct: 36  VLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQA--KEKLDHVVLGDIETMDMPYEEEQ 93

Query: 131 FGNAFPKPDIVIS--------DPNRPGMHMKLIKFLLK 160
           F       D VI         DP      ++ +K  +K
Sbjct: 94  F-------DCVIFGDVLEHLFDPWA---VIEKVKPYIK 121

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 16/127 (12%)

Query: 41  SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVP 99
              + +    E L   +     L+       LDL  G G     L R     +    + P
Sbjct: 58  EIREASLRTDEWLASELAMTGVLQRQ--AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP 115

Query: 100 QAISDACRNAKLNNISN-ATFVQGDLNKIGGDFG-NAFPKPDIVISD------PNRPGMH 151
                         +++  T   G   +I      N++   D + S       P++  + 
Sbjct: 116 VQNKRNEEYNNQAGLADNITVKYGSFLEI--PCEDNSY---DFIWSQDAFLHSPDKLKVF 170

Query: 152 MKLIKFL 158
            +  + L
Sbjct: 171 QECARVL 177

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Length = 189

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 71  VLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD-LNKIG 128
           VLDL+ G+G +GL  L+R    V   E   ++ +   RN +   +S AT  +G     + 
Sbjct: 48  VLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVA 107

Query: 129 GDFGNAFPKPDIVISDP 145
               +     D+V++DP
Sbjct: 108 AGTTSPV---DLVLADP 121

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 8/69 (11%)

Query: 60  CAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVV-----PQAISDACRNAKLNNI 114
              L     +IVLD    TG  G+   R+       EV        A     RN  LN  
Sbjct: 40  VVLLNILNPKIVLDALSATGIRGI---RFALETPAEEVWLNDISEDAYELMKRNVMLNFD 96

Query: 115 SNATFVQGD 123
                 +G 
Sbjct: 97  GELRESKGR 105

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 70  IVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNK 126
             LD F G+G++G   L+R  K V   E+     +   +N +    S   A  +      
Sbjct: 56  ECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD 115

Query: 127 IGGDFGNAFPKPDIVISDPNRP---GMHMKLIKFLLK---LKAPRIVYV 169
                    P  D+V  DP  P    +  + I  L +   LK   ++YV
Sbjct: 116 F-LKQPQNQPHFDVVFLDP--PFHFNLAEQAISLLCENNWLKPNALIYV 161

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 71  VLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129
           +L L CG   +   L      +V   +     ++         ++    +   D+ K+  
Sbjct: 46  ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA--HVPQLRWETMDVRKL-- 101

Query: 130 DFG-NAFPKPDIVIS 143
           DF   +F   D+V+ 
Sbjct: 102 DFPSASF---DVVLE 113

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 71  VLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129
           VLD+  G G   + +      H +G ++    ++ A      NN     F   D+     
Sbjct: 59  VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNN--KIIFEANDILTK-- 114

Query: 130 DFG-NAFPKPDIVISDPNRPGMHMK 153
           +F  N F   D++ S      + ++
Sbjct: 115 EFPENNF---DLIYSRDAILALSLE 136

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 39  ANSFFQTNTHQAEVLYKLIEDCAGLR---DDGSEIVLDLFCGTGTIGLTLARWVKHVYGY 95
           A ++     H A    + + D A L        E VLDL CG G +   LA       G 
Sbjct: 21  AQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGV 80

Query: 96  EVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143
           +     + DA R A    +  A++ Q    K+    G  +   D++ +
Sbjct: 81  DGDRTLV-DAARAAGAGEVHLASYAQLAEAKV--PVGKDY---DLICA 122

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 71  VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
           VLDL  G+G + +   +      G ++ P  +  A  NAK N +    F++G L      
Sbjct: 124 VLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALPF 182

Query: 131 FGNAFPKPDIVI 142
                   D+++
Sbjct: 183 -----GPFDLLV 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	100.0
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	100.0
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	100.0
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.89
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.85
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.85
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.84
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.83
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.82
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.8
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.79
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.79
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.78
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.78
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.76
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.76
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.75
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.75
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.75
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.74
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.73
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.73
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.73
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.73
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.72
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.72
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.72
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.71
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.7
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.7
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.7
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.69
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.69
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.69
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.68
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.67
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.67
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.67
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.66
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.65
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.65
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.65
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.64
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.64
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.64
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.64
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.64
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.64
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.64
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.64
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.63
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.62
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.62
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.61
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.61
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.6
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.6
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.59
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.59
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.59
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.59
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.59
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.59
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.59
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.58
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.58
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.58
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.58
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.57
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.57
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.57
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.57
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.57
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.56
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.56
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.56
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.55
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.55
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.55
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.54
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.53
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.53
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.53
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.53
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.53
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.53
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.52
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.52
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.52
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.52
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.52
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.52
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.52
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.52
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.51
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.51
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.51
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.51
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.51
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.51
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.5
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.49
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.49
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.49
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.49
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.49
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.49
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.48
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.48
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.48
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.48
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.48
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.48
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.47
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.47
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.47
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.47
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.47
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.47
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.47
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.47
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.46
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.46
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.46
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.46
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.46
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.46
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.46
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.46
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.46
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.45
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.45
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.45
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.45
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.44
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.44
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.44
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.44
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.44
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.44
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.44
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.44
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.43
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.43
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.43
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.43
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.42
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.42
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.41
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.41
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.41
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.41
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.41
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.41
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.41
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.41
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.4
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.4
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.4
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.4
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.4
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.4
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.39
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.39
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.39
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.39
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.38
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.38
3lkd_A	542	Type I restriction-modification system methyltrans	99.38
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.38
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.38
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.37
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.37
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.37
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.37
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.37
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.37
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.36
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.36
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.36
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.36
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.36
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.36
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.36
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.36
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.35
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.35
2o07_A	304	Spermidine synthase; structural genomics, structur	99.34
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.33
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.33
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.32
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.32
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.32
3ocj_A	305	Putative exported protein; structural genomics, PS	99.32
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.32
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.32
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.32
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.32
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.31
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.3
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.3
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.3
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.3
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.3
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.3
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.29
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.29
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.28
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.28
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.28
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.28
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.27
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.27
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.27
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.27
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.27
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.27
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.26
3khk_A	544	Type I restriction-modification system methylation	99.26
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.26
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.26
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.25
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.25
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.24
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.24
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.22
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.22
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.21
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.21
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.2
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.19
3ufb_A	530	Type I restriction-modification system methyltran	99.19
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.19
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.18
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.18
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.16
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.16
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.15
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.14
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.12
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.12
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.12
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.11
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.1
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.08
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.08
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.06
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.06
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.02
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.02
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.02
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.02
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.01
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.01
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.99
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.97
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.96
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.95
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.94
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.94
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.93
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.92
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.89
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.89
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.84
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.84
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.82
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.79
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.78
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.77
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.76
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.71
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.71
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.7
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.7
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.69
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.67
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.66
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.65
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.59
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.57
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.55
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.54
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.53
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.51
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.5
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.49
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.46
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.41
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	98.38
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	98.27
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.25
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	98.22
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.2
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.12
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.12
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	98.02
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.89
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.87
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.77
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	97.74
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.71
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	97.59
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.18
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	97.16
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.15
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.1
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.03
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.98
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	96.86
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.85
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.44
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.38
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.23
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.07
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	95.86
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.67
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.45
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.31
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.17
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.1
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.0
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	94.82
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.76
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.64
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.34
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	93.87
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.42
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	93.4
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	93.27
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.12
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	92.88
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.72
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.52
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	92.51
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.3
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.11
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	91.88
1lnq_A	336	MTHK channels, potassium channel related protein;	91.5
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.39
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	91.35
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.13
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	90.95
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	90.62
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	90.43
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.36
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	90.26
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	90.23
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.15
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	89.68
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.63
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.43
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	89.17
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	89.07
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	88.88
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	88.85
3gms_A	340	Putative NADPH:quinone reductase; structural genom	88.56
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	88.26
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.08
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	87.85
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.66
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	87.64
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	87.63
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	87.54
4g65_A	461	TRK system potassium uptake protein TRKA; structur	87.12
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	86.94
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	86.89
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	86.87
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	86.83
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	86.59
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	86.51
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	86.3
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	86.22
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	86.07
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	86.03
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	85.87
3rih_A	293	Short chain dehydrogenase or reductase; structural	85.73
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	85.7
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	85.32
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	85.22
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	85.15
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	85.12
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	85.07
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	85.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	84.91
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	84.85
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	84.66
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	84.57
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	84.57
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	84.26
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	83.96
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	83.86
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	83.84
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	83.79
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	83.61
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	83.56
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	83.43
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	83.35
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	83.14
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	82.98
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	82.93
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	82.78
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	82.57
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	82.49
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	82.31
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	82.29
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	82.13
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	81.93
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	81.92
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	81.48
4eye_A	342	Probable oxidoreductase; structural genomics, niai	81.43
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	81.43
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	81.27
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	81.07
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	81.04
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	80.9
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	80.8
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	80.73
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	80.54
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	80.53
2dpm_A	284	M.dpnii 1, protein (adenine-specific methyltransfe	80.38
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	80.3
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.11

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=100.00  E-value=3.2e-33  Score=242.53  Aligned_cols=193  Identities=40%  Similarity=0.612  Sum_probs=175.8

Q ss_pred             ccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH
Q 043853            4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL   83 (222)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~   83 (222)
                      +|++..+.+++ ++..++|+..+.+.++|..|.+++++|+|.|...++.+.+++.+ .    .++.+|||+|||+|.+++
T Consensus       233 ~~~~~~~~~~g-~~~~l~G~~~i~e~~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~----~~~~~VLDlgcG~G~~sl  306 (425)
T 2jjq_A          233 VNRSKSDVSYG-DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-L----VEGEKILDMYSGVGTFGI  306 (425)
T ss_dssp             ECCSSSCCSCC-EEEEEEECSCEEEEETTEEEEECTTSCCCSBHHHHHHHHHHHHH-H----CCSSEEEEETCTTTHHHH
T ss_pred             cCCCCCceecc-eEEEEECCCeEEEEECCEEEEEccccccccCHHHHHHHHHHhhc-c----CCCCEEEEeeccchHHHH
Confidence            45666666777 88999999999999999999999999999999999999888877 2    247899999999999999


Q ss_pred             HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCC
Q 043853           84 TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA  163 (222)
Q Consensus        84 ~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~  163 (222)
                      .+++.+.+|+|+|+|+.+++.|++|++.++++ ++++++|+.++...      .||+|++|||+.++...+++.+..++|
T Consensus       307 ~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~------~fD~Vv~dPPr~g~~~~~~~~l~~l~p  379 (425)
T 2jjq_A          307 YLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK------GFDTVIVDPPRAGLHPRLVKRLNREKP  379 (425)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT------TCSEEEECCCTTCSCHHHHHHHHHHCC
T ss_pred             HHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc------CCCEEEEcCCccchHHHHHHHHHhcCC
Confidence            99998889999999999999999999999998 99999999886532      799999999999998889999999999


Q ss_pred             CcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEE
Q 043853          164 PRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE  220 (222)
Q Consensus       164 ~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~  220 (222)
                      ++++|++|++.++++|+..|         .  |++..+.++||||+|+|+|+|++|+
T Consensus       380 ~givyvsc~p~tlarDl~~l---------~--y~l~~~~~~DmFP~T~HvE~v~ll~  425 (425)
T 2jjq_A          380 GVIVYVSCNPETFARDVKML---------D--YRIDEIVALDMFPHTPHVELVAKLV  425 (425)
T ss_dssp             SEEEEEESCHHHHHHHHHHS---------S--CCEEEEEEECCSTTSSCCEEEEEEC
T ss_pred             CcEEEEECChHHHHhHHhhC---------e--EEEEEEEEECcCCCCceEEEEEEEC
Confidence            99999999999999999887         3  9999999999999999999999984

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=100.00  E-value=1.1e-32  Score=235.72  Aligned_cols=194  Identities=27%  Similarity=0.433  Sum_probs=170.6

Q ss_pred             CceEEEeCCCceeeee--cC--eeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC
Q 043853           15 EEEYTLYGKSNITETL--RG--LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK   90 (222)
Q Consensus        15 ~~~~~~~g~~~~~~~~--~~--~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~   90 (222)
                      .+..+++|+..+.+..  +|  ..|.+++++|+|.|...++.+.+++.+.+...   +.+|||+|||+|.+++.+|+.+.
T Consensus       160 ~~~~~~~G~~~i~e~~~~~g~~~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~---~~~vLDl~cG~G~~~l~la~~~~  236 (369)
T 3bt7_A          160 TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS---KGDLLELYCGNGNFSLALARNFD  236 (369)
T ss_dssp             TTEEEESSCSEEEEECCBTTBCCEEEEETTSCCCSBHHHHHHHHHHHHHHTTTC---CSEEEEESCTTSHHHHHHGGGSS
T ss_pred             CceEEEcCCCEEEEEeccCCceEEEEECCCCeecCCHHHHHHHHHHHHHHhhcC---CCEEEEccCCCCHHHHHHHhcCC
Confidence            4567889998888877  68  77888899999999999999999998886432   46899999999999999999888


Q ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCC------------CCCcEEEECCCCCCccHHHHHHH
Q 043853           91 HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF------------PKPDIVISDPNRPGMHMKLIKFL  158 (222)
Q Consensus        91 ~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~------------~~fD~ii~~pp~~~~~~~~~~~l  158 (222)
                      +|+|+|+|+.+++.|++|++.+++++++++++|+.++...+....            ..||+|++|||+.++...+.+.+
T Consensus       237 ~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l  316 (369)
T 3bt7_A          237 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV  316 (369)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccccHHHHHHHH
Confidence            999999999999999999999999889999999988765433211            26999999999999988888888


Q ss_pred             HhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          159 LKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       159 ~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                      .  +++.++|++|++.++++++..+.         .+|++..+.++|+||+|+|+|+|++|+|.
T Consensus       317 ~--~~g~ivyvsc~p~t~ard~~~l~---------~~y~~~~~~~~D~FP~T~HvE~v~ll~r~  369 (369)
T 3bt7_A          317 Q--AYPRILYISCNPETLCKNLETLS---------QTHKVERLALFDQFPYTHHMQCGVLLTAK  369 (369)
T ss_dssp             T--TSSEEEEEESCHHHHHHHHHHHH---------HHEEEEEEEEECCSTTSSCCEEEEEEEEC
T ss_pred             h--CCCEEEEEECCHHHHHHHHHHHh---------hCcEEEEEEeeccCCCCCcEEEEEEEEeC
Confidence            6  78899999999999999999884         36999999999999999999999999873

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=100.00  E-value=6.3e-32  Score=235.37  Aligned_cols=194  Identities=35%  Similarity=0.501  Sum_probs=170.4

Q ss_pred             eEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEe
Q 043853           17 EYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYE   96 (222)
Q Consensus        17 ~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD   96 (222)
                      ...++|...+.+ +.|..|.+++++|+|.|...++.+++++.+.+...  ++.+|||+|||+|.+++.+++...+++|+|
T Consensus       239 ~~~l~g~~~~~~-~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~--~~~~VLDlgcG~G~~~~~la~~~~~V~gvD  315 (433)
T 1uwv_A          239 LETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ--PEDRVLDLFCGMGNFTLPLATQAASVVGVE  315 (433)
T ss_dssp             CEEEECCCCEEE-ETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCC--TTCEEEEESCTTTTTHHHHHTTSSEEEEEE
T ss_pred             EEEEeCCCcEEE-ECCEEEEECcccccccCHHHHHHHHHHHHHhhcCC--CCCEEEECCCCCCHHHHHHHhhCCEEEEEe
Confidence            466788776655 88999999999999999999999999998887543  367999999999999999998888999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccch
Q 043853           97 VVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATC  176 (222)
Q Consensus        97 ~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~  176 (222)
                      +|+.+++.|++|++.+++++++++++|+.+....+....+.||+|++|||+.+.. .+++.+..+++++++|++|++.++
T Consensus       316 ~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~-~~~~~l~~~~p~~ivyvsc~p~tl  394 (433)
T 1uwv_A          316 GVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATL  394 (433)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH-HHHHHHHHHCCSEEEEEESCHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccHH-HHHHHHHhcCCCeEEEEECChHHH
Confidence            9999999999999999998999999999885432111124799999999999875 788888888999999999999999


Q ss_pred             HhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          177 ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       177 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                      ++++..+.        +.||++..+.++|+||+|+|+|+|++|+|.
T Consensus       395 ard~~~l~--------~~Gy~~~~~~~~d~Fp~t~HvE~v~ll~r~  432 (433)
T 1uwv_A          395 ARDSEALL--------KAGYTIARLAMLDMFPHTGHLESMVLFSRV  432 (433)
T ss_dssp             HHHHHHHH--------HTTCEEEEEEEECCSTTSSCCEEEEEEEC-
T ss_pred             HhhHHHHH--------HCCcEEEEEEEeccCCCCCeEEEEEEEEEC
Confidence            99999886        679999999999999999999999999873

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=3.1e-22  Score=164.14  Aligned_cols=195  Identities=22%  Similarity=0.250  Sum_probs=139.5

Q ss_pred             CCCCccccCceEEEeCCCc-eeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH
Q 043853            7 SVGNTSVGEEEYTLYGKSN-ITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL   85 (222)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l   85 (222)
                      +..+.+...++++++|+.. ...+++|..|.+++.+||+.+...++.+..    ....  .++.+|||+|||+|.+++.+
T Consensus        64 ~~~~~~~~~~~~~l~G~~~~~~~~e~g~~f~~~~~~~f~~~~~~~e~~~~----~~~~--~~~~~VLDlgcG~G~~s~~l  137 (272)
T 3a27_A           64 QITGEFRTPHVKILYGKETETIHKEYGCLFKLDVAKIMWSQGNIEERKRM----AFIS--NENEVVVDMFAGIGYFTIPL  137 (272)
T ss_dssp             ---------CCEEEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHH----HTSC--CTTCEEEETTCTTTTTHHHH
T ss_pred             CCCCcccccceEEEeCCCcEEEEEECCEEEEEechhEEECCCchHHHHHH----HHhc--CCCCEEEEecCcCCHHHHHH
Confidence            3445666778899999871 224468999999999988877666655431    1112  34789999999999999999


Q ss_pred             hhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCC
Q 043853           86 ARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA  163 (222)
Q Consensus        86 a~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~  163 (222)
                      ++.++  +|+|+|+|+.+++.|++|++.+++++++++++|+.++ ..    .+.||+|+++||+ +...-+...+..++|
T Consensus       138 a~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~----~~~~D~Vi~d~p~-~~~~~l~~~~~~Lkp  211 (272)
T 3a27_A          138 AKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL----KDVADRVIMGYVH-KTHKFLDKTFEFLKD  211 (272)
T ss_dssp             HHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC----TTCEEEEEECCCS-SGGGGHHHHHHHEEE
T ss_pred             HHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc----cCCceEEEECCcc-cHHHHHHHHHHHcCC
Confidence            98754  9999999999999999999999998899999999887 32    2479999999996 444444555667899


Q ss_pred             CcEEEEeeCcc------chHhhHHHhhccCCCCccCCCe--EEeEeeeeccC-CCCCceeEEEEEE
Q 043853          164 PRIVYVSCNPA------TCARDLDYLCHGVGDQNIKGCY--KLKSLQPVDMF-PHTPHIECVCLLE  220 (222)
Q Consensus       164 ~~~v~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~-p~~~~~~~v~~~~  220 (222)
                      +|++|++|...      +..+.++.+.+       ..++  +......++.+ |.++|+-.-..+.
T Consensus       212 gG~l~~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~p~~~~~~~d~~~~  270 (272)
T 3a27_A          212 RGVIHYHETVAEKIMYERPIERLKFYAE-------KNGYKLIDYEVRKIKKYAPGVWHVVVDAKFE  270 (272)
T ss_dssp             EEEEEEEEEEEGGGTTTHHHHHHHHHHH-------HTTEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEcCccccccccHHHHHHHHHH-------HhCCeeEEeEEEEEEEECCCCCEEEEEEEEe
Confidence            99999999754      44455555542       2234  44466777777 7777765544443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.85  E-value=3.1e-20  Score=159.92  Aligned_cols=158  Identities=16%  Similarity=0.201  Sum_probs=123.8

Q ss_pred             ccCceEEEeCCC---ceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHH
Q 043853           13 VGEEEYTLYGKS---NITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLT   84 (222)
Q Consensus        13 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~   84 (222)
                      ...+.+.++|+.   .+.+.++|..|.+++.     +||+.+...    .+++...     .++.+|||+|||+|.+++.
T Consensus       167 ~~~~~~~l~G~~~~~~~~~~~~g~~f~v~~~~~~~tgff~~~~~~----~~~l~~~-----~~~~~VLDl~cG~G~~sl~  237 (396)
T 3c0k_A          167 MELTQGPVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDS----RLATRRY-----VENKRVLNCFSYTGGFAVS  237 (396)
T ss_dssp             CCCEEEEEESCCCCSSEEEEETTEEEEECTTTSSTTSSCGGGHHH----HHHHHHH-----CTTCEEEEESCTTCSHHHH
T ss_pred             CCccceeEcCCCCCceEEEEECCEEEEEeccccccCCcCcCHHHH----HHHHHHh-----hCCCeEEEeeccCCHHHHH
Confidence            445678899984   7889999999999987     999865443    2333333     1378999999999999999


Q ss_pred             Hhhc-CCeEEEEeCCHHHHHHHHHHHHHcCC-C-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC------------C
Q 043853           85 LARW-VKHVYGYEVVPQAISDACRNAKLNNI-S-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP------------G  149 (222)
Q Consensus        85 la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~-~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~------------~  149 (222)
                      +++. ..+|+|+|+|+.+++.|++|++.+++ + +++++++|+.++...+......||+|++|||+.            +
T Consensus       238 la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~  317 (396)
T 3c0k_A          238 ALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRG  317 (396)
T ss_dssp             HHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTH
T ss_pred             HHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHH
Confidence            9987 45999999999999999999999999 7 799999999887654321224799999999962            2


Q ss_pred             ccHHHHHHHHhCCCCcEEEEeeCccchHhh
Q 043853          150 MHMKLIKFLLKLKAPRIVYVSCNPATCARD  179 (222)
Q Consensus       150 ~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~  179 (222)
                      ...-+...+..++|+|++|++|++.+...+
T Consensus       318 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  347 (396)
T 3c0k_A          318 YKDINMLAIQLLNEGGILLTFSCSGLMTSD  347 (396)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEECCTTCCHH
T ss_pred             HHHHHHHHHHhcCCCcEEEEEeCCCcCCHH
Confidence            223334455668999999999988766544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.85  E-value=5.7e-20  Score=151.10  Aligned_cols=192  Identities=18%  Similarity=0.196  Sum_probs=131.7

Q ss_pred             CCccccCceEEEeCCCce-eeeecCeeEEEcC--CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH
Q 043853            9 GNTSVGEEEYTLYGKSNI-TETLRGLTFQISA--NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL   85 (222)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~--~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l   85 (222)
                      .+.....+...++|+... ...++|..|.++.  ..|++.+......+.+.    +    .++.+|||+|||+|.+++.+
T Consensus        72 ~~~~~~~~~~~l~G~~~~~~~~e~g~~f~~d~~~~~f~~~~~~~~~~l~~~----~----~~~~~VLDlgcG~G~~~~~l  143 (278)
T 2frn_A           72 HGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKV----A----KPDELVVDMFAGIGHLSLPI  143 (278)
T ss_dssp             --------CEEEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHH----C----CTTCEEEETTCTTTTTHHHH
T ss_pred             cCCccccceEEEECCCCEEEEEECCEEEEEEccceeEcCCcHHHHHHHHHh----C----CCCCEEEEecccCCHHHHHH
Confidence            455667788899998754 4468999999985  46777665655554332    2    24789999999999999999


Q ss_pred             hhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCC
Q 043853           86 ARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA  163 (222)
Q Consensus        86 a~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~  163 (222)
                      ++.+. +|+|+|+|+.+++.|++|++.+++++ ++++++|+.++..     ...||+|+++||... ..-+....+.++|
T Consensus       144 a~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-----~~~fD~Vi~~~p~~~-~~~l~~~~~~Lkp  217 (278)
T 2frn_A          144 AVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-----ENIADRILMGYVVRT-HEFIPKALSIAKD  217 (278)
T ss_dssp             HHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-----CSCEEEEEECCCSSG-GGGHHHHHHHEEE
T ss_pred             HHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-----cCCccEEEECCchhH-HHHHHHHHHHCCC
Confidence            98766 69999999999999999999999986 9999999988765     258999999998432 2233334455789


Q ss_pred             CcEEEEeeCc------cchHhhHHHhhccCCCCccCCCeEEeEee---eeccCCCCCceeEEEEEEe
Q 043853          164 PRIVYVSCNP------ATCARDLDYLCHGVGDQNIKGCYKLKSLQ---PVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       164 ~~~v~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~v~~~~~  221 (222)
                      +|.+++.++.      ......+...+.       +.||++....   ...+.|..+|...-..+.|
T Consensus       218 gG~l~~~~~~~~~~~~~~~~~~i~~~~~-------~~G~~~~~~~~~~v~~~~p~~~h~~~d~~v~r  277 (278)
T 2frn_A          218 GAIIHYHNTVPEKLMPREPFETFKRITK-------EYGYDVEKLNELKIKRYAPGVWHVVLDLRVFK  277 (278)
T ss_dssp             EEEEEEEEEEEGGGTTTTTHHHHHHHHH-------HTTCEEEEEEEEEEEEETTTEEEEEEEEEEEC
T ss_pred             CeEEEEEEeeccccccccHHHHHHHHHH-------HcCCeeEEeeeEEEEecCCCceEEEEEEEEec
Confidence            8887765532      233334443332       5577766633   2345677777655444433

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.84  E-value=1.1e-20  Score=162.11  Aligned_cols=158  Identities=17%  Similarity=0.165  Sum_probs=120.3

Q ss_pred             cCceEEEeCCC---ceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH
Q 043853           14 GEEEYTLYGKS---NITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL   85 (222)
Q Consensus        14 ~~~~~~~~g~~---~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l   85 (222)
                      ..++++++|+.   .+...++|.+|.+++.     +|| .+......++   .+.+    .++.+|||+|||+|.+++.+
T Consensus       159 ~~~~~~l~G~~~~~~~~v~e~g~~f~v~~~~~~~t~ff-~~~~~~~~~~---~~~~----~~~~~VLDl~cGtG~~sl~l  230 (385)
T 2b78_A          159 DNVSAHLYGQEAPEQFLILENGISYNVFLNDGLMTGIF-LDQRQVRNEL---INGS----AAGKTVLNLFSYTAAFSVAA  230 (385)
T ss_dssp             -CCEEEEEESCCCSSEEEEETTEEEEECSSSSSCCSSC-GGGHHHHHHH---HHTT----TBTCEEEEETCTTTHHHHHH
T ss_pred             CccceeecCCCCCceEEEEECCEEEEEeccccccCCcC-CcHHHHHHHH---HHHh----cCCCeEEEEeeccCHHHHHH
Confidence            56788899985   6766779999999987     999 4555554443   2332    23689999999999999999


Q ss_pred             hhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC----CccHHHH---
Q 043853           86 ARWV-KHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP----GMHMKLI---  155 (222)
Q Consensus        86 a~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~----~~~~~~~---  155 (222)
                      |+.+ .+|+|+|+|+.+++.|++|++.++++  +++++++|+.++...+......||+|++|||+.    +......   
T Consensus       231 a~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~  310 (385)
T 2b78_A          231 AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDY  310 (385)
T ss_dssp             HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHH
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHH
Confidence            9854 59999999999999999999999987  799999999887544322234799999999973    1211222   


Q ss_pred             ----HH-HHhCCCCcEEEEeeCccchHhh
Q 043853          156 ----KF-LLKLKAPRIVYVSCNPATCARD  179 (222)
Q Consensus       156 ----~~-l~~l~~~~~v~~~~~~~~~~~~  179 (222)
                          .. ...++|+|+++++|++.++.++
T Consensus       311 ~~ll~~~~~~L~pgG~l~~~~~~~~~~~~  339 (385)
T 2b78_A          311 HKLIRQGLEILSENGLIIASTNAANMTVS  339 (385)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEECCTTSCHH
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCCcCCHH
Confidence                22 3458999999999988776554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.83  E-value=1.9e-19  Score=151.86  Aligned_cols=190  Identities=16%  Similarity=0.181  Sum_probs=139.2

Q ss_pred             CCCccccCceEEEeCCC--ceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH
Q 043853            8 VGNTSVGEEEYTLYGKS--NITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL   85 (222)
Q Consensus         8 ~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l   85 (222)
                      ..+.....+...++|+.  .....++|..|.+++..|++.+...++.+  .+...+    .++.+|||+|||+|.+++. 
T Consensus       140 ~~g~~r~~~~~~l~G~~~~~~~~~e~g~~f~~d~~~~~~~~~~~~er~--~i~~~~----~~~~~VLDlg~G~G~~~l~-  212 (336)
T 2yx1_A          140 VKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERA--RIMKKV----SLNDVVVDMFAGVGPFSIA-  212 (336)
T ss_dssp             -----CCCCEEEEEECCCCEEEEEETTEEEEEETTTSCCCGGGHHHHH--HHHHHC----CTTCEEEETTCTTSHHHHH-
T ss_pred             CCCcccccceEEEeCCCCcEEEEEECCEEEEEehHHhccCCccHHHHH--HHHHhc----CCCCEEEEccCccCHHHHh-
Confidence            34555666788999986  34566799999999998888766666654  333433    2478999999999999999 


Q ss_pred             hhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCC
Q 043853           86 ARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKA  163 (222)
Q Consensus        86 a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~  163 (222)
                      ++.+.+++|+|+|+.+++.|++|++.++++ +++++++|+.++.       ..||+|++|||+...  .+++.+ ..+++
T Consensus       213 a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-------~~fD~Vi~dpP~~~~--~~l~~~~~~L~~  283 (336)
T 2yx1_A          213 CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-------VKGNRVIMNLPKFAH--KFIDKALDIVEE  283 (336)
T ss_dssp             TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-------CCEEEEEECCTTTGG--GGHHHHHHHEEE
T ss_pred             ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-------CCCcEEEECCcHhHH--HHHHHHHHHcCC
Confidence            887779999999999999999999999984 6999999998875       379999999986532  445544 44688


Q ss_pred             CcEEEEe-eCccchHhhHHHhhccCCCCccCCCeEEeEeeeec-cCCCCCceeEEEEEEe
Q 043853          164 PRIVYVS-CNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVD-MFPHTPHIECVCLLEL  221 (222)
Q Consensus       164 ~~~v~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~v~~~~~  221 (222)
                      +|.+++. |.+. .....+.+.+       ..++++.....+. +.|++.|+.....+.+
T Consensus       284 gG~l~~~~~~~~-~~~~~~~l~~-------~~~~~i~~~~~v~~~~p~~~~~~~~~~l~~  335 (336)
T 2yx1_A          284 GGVIHYYTIGKD-FDKAIKLFEK-------KCDCEVLEKRIVKSYAPREYILALDFKINK  335 (336)
T ss_dssp             EEEEEEEEEESS-SHHHHHHHHH-------HSEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEEeecC-chHHHHHHHH-------hcCCcEEEEEEEeccCCCCCEEEEEEEEec
Confidence            8876654 4444 4444444432       1167777766664 5688888888777765

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.82  E-value=2.6e-19  Score=146.67  Aligned_cols=148  Identities=19%  Similarity=0.257  Sum_probs=109.5

Q ss_pred             CCccccCceEEEeCCCc-eeeeecCeeEEEcCC--ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH
Q 043853            9 GNTSVGEEEYTLYGKSN-ITETLRGLTFQISAN--SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL   85 (222)
Q Consensus         9 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l   85 (222)
                      ...+...++.+++|+.. ....++|..|.++..  .|++.+.....++.    +..    .++++|||+|||+|.+++.+
T Consensus        72 ~g~~R~~~~e~L~G~~~~~~~~E~G~~~~~D~~k~~f~~~~~~er~ri~----~~~----~~g~~VlD~~aG~G~~~i~~  143 (278)
T 3k6r_A           72 HGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMA----KVA----KPDELVVDMFAGIGHLSLPI  143 (278)
T ss_dssp             --------CEEEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHH----HHC----CTTCEEEETTCTTTTTTHHH
T ss_pred             CCccccccceEEecCCcEEEEEECCEEEEEeccceEEcCCcHHHHHHHH----Hhc----CCCCEEEEecCcCcHHHHHH
Confidence            34556667889999984 445789999999964  56665555544433    332    35889999999999999988


Q ss_pred             hhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHH-HHHhCC
Q 043853           86 ARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIK-FLLKLK  162 (222)
Q Consensus        86 a~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~-~l~~l~  162 (222)
                      |+.+ .+|+|+|+||.+++.+++|++.|++++ ++++++|+.++...     ..||.|+.+||...  ..+++ .+..++
T Consensus       144 a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~-----~~~D~Vi~~~p~~~--~~~l~~a~~~lk  216 (278)
T 3k6r_A          144 AVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-----NIADRILMGYVVRT--HEFIPKALSIAK  216 (278)
T ss_dssp             HHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-----SCEEEEEECCCSSG--GGGHHHHHHHEE
T ss_pred             HHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc-----cCCCEEEECCCCcH--HHHHHHHHHHcC
Confidence            8765 599999999999999999999999976 99999999887542     57999999988542  23333 455578


Q ss_pred             CCcEEEEee
Q 043853          163 APRIVYVSC  171 (222)
Q Consensus       163 ~~~~v~~~~  171 (222)
                      ++|++.+.+
T Consensus       217 ~gG~ih~~~  225 (278)
T 3k6r_A          217 DGAIIHYHN  225 (278)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999886554

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.80  E-value=1e-17  Score=140.91  Aligned_cols=152  Identities=20%  Similarity=0.152  Sum_probs=110.0

Q ss_pred             EEEeCC----CceeeeecCeeEEEcCCccccC--CHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCe
Q 043853           18 YTLYGK----SNITETLRGLTFQISANSFFQT--NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH   91 (222)
Q Consensus        18 ~~~~g~----~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~   91 (222)
                      +.++|.    ..+...++|..|.+++..++++  ...+.. .++++.+.+.. ..++.+|||+|||+|.+++.+++.+.+
T Consensus       100 ~~~~g~~~~~~~~~i~e~g~~f~v~~~~~~~tg~f~dq~~-~~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~ga~  177 (332)
T 2igt_A          100 RWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIV-HWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAE  177 (332)
T ss_dssp             EEECSSSCCCSEEEEEETTEEEEEECCSSSCCSCCGGGHH-HHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCE
T ss_pred             ceEecCCCCCCceEEEECCEEEEEecCccccceechHHHH-HHHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcCCE
Confidence            567773    4677888999999998766654  222222 23344444321 123679999999999999999987779


Q ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc------------cHHHHHH
Q 043853           92 VYGYEVVPQAISDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM------------HMKLIKF  157 (222)
Q Consensus        92 v~gvD~~~~~i~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~------------~~~~~~~  157 (222)
                      |+++|+|+.+++.|++|++.+++++  ++++++|+.++..........||+|++|||+.+.            ...+++.
T Consensus       178 V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~  257 (332)
T 2igt_A          178 VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDI  257 (332)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999874  9999999988764321112479999999995321            1344444


Q ss_pred             H-HhCCCCcEEEEee
Q 043853          158 L-LKLKAPRIVYVSC  171 (222)
Q Consensus       158 l-~~l~~~~~v~~~~  171 (222)
                      + ..++|+|++++.+
T Consensus       258 ~~~~LkpgG~lli~~  272 (332)
T 2igt_A          258 CREILSPKALGLVLT  272 (332)
T ss_dssp             HHHTBCTTCCEEEEE
T ss_pred             HHHhcCcCcEEEEEE
Confidence            3 4489999876655

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.79  E-value=3.1e-19  Score=152.99  Aligned_cols=157  Identities=16%  Similarity=0.178  Sum_probs=118.6

Q ss_pred             ccCceEEEeCCC--ceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH
Q 043853           13 VGEEEYTLYGKS--NITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL   85 (222)
Q Consensus        13 ~~~~~~~~~g~~--~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l   85 (222)
                      ...+...++|+.  .+.+.++|..|.+++.     +||+......    .++   ...   ++.+|||+|||+|.+++.+
T Consensus       158 ~~~~~~~l~G~~~~~~~~~e~g~~f~i~~~~~~~~g~f~~~~~~~----~~~---~~~---~~~~VLDlg~G~G~~~~~l  227 (382)
T 1wxx_A          158 LPLYVRPLLGEVPERVQVQEGRVRYLVDLRAGQKTGAYLDQRENR----LYM---ERF---RGERALDVFSYAGGFALHL  227 (382)
T ss_dssp             CCCEEEEEESCCCSEEEEEETTEEEEEECSTTSCCCCCGGGHHHH----HHG---GGC---CEEEEEEETCTTTHHHHHH
T ss_pred             CCcccceecCCCCceEEEEECCEEEEEEchhcccCccccchHHHH----HHH---Hhc---CCCeEEEeeeccCHHHHHH
Confidence            456777899986  6778889999999986     6776432221    112   222   3679999999999999999


Q ss_pred             hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc-----------HHH
Q 043853           86 ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH-----------MKL  154 (222)
Q Consensus        86 a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~-----------~~~  154 (222)
                      ++.+.+|+|+|+|+.+++.|++|++.+++++++++++|+.++...+......||+|++|||+....           ..+
T Consensus       228 a~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~  307 (382)
T 1wxx_A          228 ALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEV  307 (382)
T ss_dssp             HHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHH
T ss_pred             HHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHH
Confidence            887779999999999999999999999998899999999887654322235799999999963321           222


Q ss_pred             HH-HHHhCCCCcEEEEeeCccchHhh
Q 043853          155 IK-FLLKLKAPRIVYVSCNPATCARD  179 (222)
Q Consensus       155 ~~-~l~~l~~~~~v~~~~~~~~~~~~  179 (222)
                      +. .+..++|+|+++++++......+
T Consensus       308 l~~~~~~LkpgG~l~~~~~~~~~~~~  333 (382)
T 1wxx_A          308 NLRAIKLLKEGGILATASCSHHMTEP  333 (382)
T ss_dssp             HHHHHHTEEEEEEEEEEECCTTSCHH
T ss_pred             HHHHHHhcCCCCEEEEEECCCCCCHH
Confidence            23 34457899999988876555443

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.79  E-value=7e-18  Score=130.53  Aligned_cols=141  Identities=18%  Similarity=0.188  Sum_probs=108.4

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDAC  106 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~  106 (222)
                      .++.|..+..++..+.+......+.+.+++.....   .++.+|||+|||+|.+++.++.. ..+++|+|+|+.+++.|+
T Consensus         8 g~~~g~~l~~~~~~~rp~~~~~~~~l~~~l~~~~~---~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~   84 (189)
T 3p9n_A            8 GVAGGRRIAVPPRGTRPTTDRVRESLFNIVTARRD---LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIA   84 (189)
T ss_dssp             STTTTCEEECCSCCC---CHHHHHHHHHHHHHHSC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred             eccCCcEecCCCCCCccCcHHHHHHHHHHHHhccC---CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence            34678888888877777777777777776665432   24689999999999999976654 458999999999999999


Q ss_pred             HHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---cHHHHHHHH---hCCCCcEEEEeeCc
Q 043853          107 RNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---HMKLIKFLL---KLKAPRIVYVSCNP  173 (222)
Q Consensus       107 ~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---~~~~~~~l~---~l~~~~~v~~~~~~  173 (222)
                      +|++.+++++++++++|+.++.....  .+.||+|+++||+...   ...+++.+.   .++|+|++++.+..
T Consensus        85 ~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A           85 RNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             HHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             HHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            99999998789999999998865432  2589999999996643   345555554   47999999987754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.78  E-value=1.1e-18  Score=150.30  Aligned_cols=154  Identities=25%  Similarity=0.260  Sum_probs=113.7

Q ss_pred             ccCceEEEeCCC--ceeeeecCeeEEEcCC----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHh
Q 043853           13 VGEEEYTLYGKS--NITETLRGLTFQISAN----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLA   86 (222)
Q Consensus        13 ~~~~~~~~~g~~--~~~~~~~~~~~~~~~~----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la   86 (222)
                      +..+.+.++|+.  .+...++|..|.+++.    +||+.....    ..++..++    .++.+|||+|||+|.+++.++
T Consensus       165 ~~~~~~~l~g~~~~~~~~~e~g~~~~~~~~~~~tg~f~~~~~~----~~~~~~~~----~~~~~VLDl~~G~G~~~~~la  236 (396)
T 2as0_A          165 LPEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQREN----RLALEKWV----QPGDRVLDVFTYTGGFAIHAA  236 (396)
T ss_dssp             CCCEEEEEEESCCCEEEEEETTEEEEEESSSSSSCCCSTTHHH----HHHHGGGC----CTTCEEEETTCTTTHHHHHHH
T ss_pred             CCcccceecCCCCceEEEEeCCEEEEEeccccccCccCCHHHH----HHHHHHHh----hCCCeEEEecCCCCHHHHHHH
Confidence            455778899986  5667789999999974    688753332    22232222    247899999999999999999


Q ss_pred             hc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-----------cHH
Q 043853           87 RW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-----------HMK  153 (222)
Q Consensus        87 ~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-----------~~~  153 (222)
                      +. ..+|+|+|+|+.+++.|++|++.++++ +++++++|+.++...+......||+|++|||+...           ...
T Consensus       237 ~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~  316 (396)
T 2as0_A          237 IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFN  316 (396)
T ss_dssp             HTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHH
T ss_pred             HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            87 459999999999999999999999997 79999999988765432223579999999996331           122


Q ss_pred             H-HHHHHhCCCCcEEEEeeCcc
Q 043853          154 L-IKFLLKLKAPRIVYVSCNPA  174 (222)
Q Consensus       154 ~-~~~l~~l~~~~~v~~~~~~~  174 (222)
                      + ...+..++|+|.++++++..
T Consensus       317 ~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          317 VNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             HHHHHHTTEEEEEEEEEEECCT
T ss_pred             HHHHHHHhcCCCcEEEEEECCC
Confidence            2 22344478999776665543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.78  E-value=1.2e-17  Score=127.56  Aligned_cols=151  Identities=17%  Similarity=0.246  Sum_probs=114.7

Q ss_pred             eEEEcCCccccCC--HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH
Q 043853           34 TFQISANSFFQTN--THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL  111 (222)
Q Consensus        34 ~~~~~~~~f~~~~--~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~  111 (222)
                      +|.+++..|++.+  ....+.+.+.+.+.+...  ++.+|||+|||+|.++..+++...+++|+|+|+.+++.|+++++.
T Consensus         2 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~   79 (183)
T 2yxd_A            2 KYMIPDEEFIRREGVPITKEEIRAVSIGKLNLN--KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAK   79 (183)
T ss_dssp             --CCCSTTSCCBTTBCCCCHHHHHHHHHHHCCC--TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHH
T ss_pred             CccCCchheeeccCCCcCHHHHHHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            4667778887766  445555566666666543  377999999999999999998777999999999999999999999


Q ss_pred             cCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEee-CccchHhhHHHhhccCCCC
Q 043853          112 NNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC-NPATCARDLDYLCHGVGDQ  190 (222)
Q Consensus       112 ~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~-~~~~~~~~~~~l~~~~~~~  190 (222)
                      +++++++++++|+.+....     +.||+|+++++  .....+++.+.++ ++|.+++.. ...........+.      
T Consensus        80 ~~~~~~~~~~~d~~~~~~~-----~~~D~i~~~~~--~~~~~~l~~~~~~-~gG~l~~~~~~~~~~~~~~~~l~------  145 (183)
T 2yxd_A           80 FNIKNCQIIKGRAEDVLDK-----LEFNKAFIGGT--KNIEKIIEILDKK-KINHIVANTIVLENAAKIINEFE------  145 (183)
T ss_dssp             TTCCSEEEEESCHHHHGGG-----CCCSEEEECSC--SCHHHHHHHHHHT-TCCEEEEEESCHHHHHHHHHHHH------
T ss_pred             cCCCcEEEEECCccccccC-----CCCcEEEECCc--ccHHHHHHHHhhC-CCCEEEEEecccccHHHHHHHHH------
Confidence            9988899999999873322     47999999998  4457888888888 888887776 4444444455554      


Q ss_pred             ccCCCeEEeEee
Q 043853          191 NIKGCYKLKSLQ  202 (222)
Q Consensus       191 ~~~~~~~~~~~~  202 (222)
                        +.||++....
T Consensus       146 --~~g~~~~~~~  155 (183)
T 2yxd_A          146 --SRGYNVDAVN  155 (183)
T ss_dssp             --HTTCEEEEEE
T ss_pred             --HcCCeEEEEE
Confidence              4556666543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.76  E-value=4e-17  Score=132.56  Aligned_cols=145  Identities=21%  Similarity=0.174  Sum_probs=111.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.+++.+++... +++|+|+++.+++.|++|+..+++++ ++++++|+.++...+.  .+.||+|++|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~--~~~fD~Ii~n  126 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP--KERADIVTCN  126 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC--TTCEEEEEEC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc--cCCccEEEEC
Confidence            378999999999999999998765 99999999999999999999999874 9999999998764332  2589999999


Q ss_pred             CCCCCc----------------------cHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEe
Q 043853          145 PNRPGM----------------------HMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSL  201 (222)
Q Consensus       145 pp~~~~----------------------~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  201 (222)
                      ||+...                      ...+++.+. .++++|.+++...+.........+.        +.+|....+
T Consensus       127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~--------~~~~~~~~~  198 (259)
T 3lpm_A          127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMR--------KYRLEPKRI  198 (259)
T ss_dssp             CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHH--------HTTEEEEEE
T ss_pred             CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHH--------HCCCceEEE
Confidence            995322                      123444443 3799999998777766666666654        578999988


Q ss_pred             eeeccCCCCCceeEEEEEEe
Q 043853          202 QPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       202 ~~~~~~p~~~~~~~v~~~~~  221 (222)
                      .++...+..+..-.+..+.+
T Consensus       199 ~~v~~~~~~~~~~~l~~~~k  218 (259)
T 3lpm_A          199 QFVHPRSDREANTVLVEGIK  218 (259)
T ss_dssp             EEEESSTTSCCSEEEEEEEE
T ss_pred             EEeecCCCCCcEEEEEEEEe
Confidence            88877777765555554443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.76  E-value=2.5e-17  Score=135.76  Aligned_cols=138  Identities=20%  Similarity=0.296  Sum_probs=109.4

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDAC  106 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~  106 (222)
                      ..+++..|.++++.|.+.  +.++.+++++.+.+...  ++.+|||+|||+|.+++.+++. ..+++|+|+|+.+++.|+
T Consensus        88 ~~f~~~~~~v~~~~lipr--~~te~lv~~~l~~~~~~--~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~  163 (284)
T 1nv8_A           88 KEFMGLSFLVEEGVFVPR--PETEELVELALELIRKY--GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR  163 (284)
T ss_dssp             EEETTEEEECCTTSCCCC--TTHHHHHHHHHHHHHHH--TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH
T ss_pred             eEECCeEEEeCCCceecC--hhHHHHHHHHHHHhccc--CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            468999999999999864  56666777776665322  3579999999999999999887 569999999999999999


Q ss_pred             HHHHHcCCCc-EEEEeCchhchhhhcCCCCCCC---cEEEECCCCCCccH---------------------HHHHHH--H
Q 043853          107 RNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKP---DIVISDPNRPGMHM---------------------KLIKFL--L  159 (222)
Q Consensus       107 ~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~f---D~ii~~pp~~~~~~---------------------~~~~~l--~  159 (222)
                      +|++.+++++ ++++++|+.+...      +.|   |+|++|||+.....                     .+.+.+  .
T Consensus       164 ~n~~~~~l~~~v~~~~~D~~~~~~------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~  237 (284)
T 1nv8_A          164 KNAERHGVSDRFFVRKGEFLEPFK------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGR  237 (284)
T ss_dssp             HHHHHTTCTTSEEEEESSTTGGGG------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHH
T ss_pred             HHHHHcCCCCceEEEECcchhhcc------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHh
Confidence            9999999976 9999999988543      257   99999999653221                     344444  4


Q ss_pred             hCCCCcEEEEeeCccc
Q 043853          160 KLKAPRIVYVSCNPAT  175 (222)
Q Consensus       160 ~l~~~~~v~~~~~~~~  175 (222)
                      .++++|.+++......
T Consensus       238 ~l~pgG~l~~e~~~~q  253 (284)
T 1nv8_A          238 YDTSGKIVLMEIGEDQ  253 (284)
T ss_dssp             CCCTTCEEEEECCTTC
T ss_pred             cCCCCCEEEEEECchH
Confidence            5789999998876643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.75  E-value=2.1e-17  Score=151.28  Aligned_cols=176  Identities=19%  Similarity=0.185  Sum_probs=126.9

Q ss_pred             ceeeeecCeeEEEcCCc-----cccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCC
Q 043853           25 NITETLRGLTFQISANS-----FFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVV   98 (222)
Q Consensus        25 ~~~~~~~~~~~~~~~~~-----f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~   98 (222)
                      .+...++|..|.++...     +|......    .+++....     ++.+|||+|||+|.+++.++..+. +|+++|+|
T Consensus       501 ~~~v~E~g~~~~v~~~~~~~tG~f~d~r~~----r~~l~~~~-----~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s  571 (703)
T 3v97_A          501 FLEVTEYNAHLWVNLTDYLDTGLFLDHRIA----RRMLGQMS-----KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMS  571 (703)
T ss_dssp             CEEEEETTEEEEECSSSSSSCSCCGGGHHH----HHHHHHHC-----TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESC
T ss_pred             eEEEEECCEEEEEeccccccCCCcccHHHH----HHHHHHhc-----CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCC
Confidence            67788999999999753     44432221    23333332     378999999999999998887654 79999999


Q ss_pred             HHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-------------cHHHHH-HHHhCC
Q 043853           99 PQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-------------HMKLIK-FLLKLK  162 (222)
Q Consensus        99 ~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-------------~~~~~~-~l~~l~  162 (222)
                      +.+++.|++|++.|+++  +++++++|+.++....   .++||+|++|||.-..             ...++. ....++
T Consensus       572 ~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~---~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk  648 (703)
T 3v97_A          572 RTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA---NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLR  648 (703)
T ss_dssp             HHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC---CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc---CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999987  6999999999876542   2589999999994211             112232 334489


Q ss_pred             CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeee---ccCCCCCceeEEEEEE
Q 043853          163 APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPV---DMFPHTPHIECVCLLE  220 (222)
Q Consensus       163 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~v~~~~  220 (222)
                      |+|+++++|+..++..+...+.        +.+++...+...   .-|+..+++...-.++
T Consensus       649 pgG~L~~s~~~~~~~~~~~~l~--------~~g~~~~~i~~~~lp~df~~~~~ih~~w~i~  701 (703)
T 3v97_A          649 AGGTIMFSNNKRGFRMDLDGLA--------KLGLKAQEITQKTLSQDFARNRQIHNCWLIT  701 (703)
T ss_dssp             EEEEEEEEECCTTCCCCHHHHH--------HTTEEEEECTTTTCCGGGTTCSSCCEEEEEE
T ss_pred             CCcEEEEEECCcccccCHHHHH--------HcCCceeeeeeccCCCCCCCCCcceEEEEEe
Confidence            9999999999988888887775        567775554422   2265555555554443

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.75  E-value=1.6e-17  Score=130.23  Aligned_cols=139  Identities=20%  Similarity=0.268  Sum_probs=102.1

Q ss_pred             eecCeeEEEcCCc-cccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHH
Q 043853           29 TLRGLTFQISANS-FFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDAC  106 (222)
Q Consensus        29 ~~~~~~~~~~~~~-f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~  106 (222)
                      ++.|..+..+.+. +.+......+.+.+++....     ++.+|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|+
T Consensus        20 ~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~~-----~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~   94 (202)
T 2fpo_A           20 QWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVI-----VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLI   94 (202)
T ss_dssp             GGTTCEEECCCC------CHHHHHHHHHHHHHHH-----TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             EEcCcEecCCCCCCCCCCHHHHHHHHHHHHHhhc-----CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHH
Confidence            4567778776643 33433344444444443321     36799999999999999766544 59999999999999999


Q ss_pred             HHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-CCCccHHHHHHHHh---CCCCcEEEEeeCccc
Q 043853          107 RNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-RPGMHMKLIKFLLK---LKAPRIVYVSCNPAT  175 (222)
Q Consensus       107 ~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-~~~~~~~~~~~l~~---l~~~~~v~~~~~~~~  175 (222)
                      +|++.+++++++++++|+.++...   ..+.||+|+++|| ..+....+++.+..   ++|+|++++++++..
T Consensus        95 ~~~~~~~~~~v~~~~~D~~~~~~~---~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A           95 KNLATLKAGNARVVNSNAMSFLAQ---KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             HHHHHTTCCSEEEECSCHHHHHSS---CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             HHHHHcCCCcEEEEECCHHHHHhh---cCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            999999987899999999886432   2247999999999 44555677777765   899999999987643

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.75  E-value=1.5e-17  Score=125.97  Aligned_cols=142  Identities=16%  Similarity=0.122  Sum_probs=108.1

Q ss_pred             eecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHH
Q 043853           29 TLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRN  108 (222)
Q Consensus        29 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n  108 (222)
                      ++++..+..+++ +.+......+.+.+++....    +++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++|
T Consensus         8 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~   82 (171)
T 1ws6_A            8 KARGVALKVPAS-ARPSPVRLRKALFDYLRLRY----PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN   82 (171)
T ss_dssp             GGTTCEECCCTT-CCCCCHHHHHHHHHHHHHHC----TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH
T ss_pred             ccCCeEecCCCC-CCCCHHHHHHHHHHHHHhhc----cCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence            457888888888 66665556665555554321    1367999999999999999998888899999999999999999


Q ss_pred             HHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHH---hCCCCcEEEEeeCccch
Q 043853          109 AKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLL---KLKAPRIVYVSCNPATC  176 (222)
Q Consensus       109 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~---~l~~~~~v~~~~~~~~~  176 (222)
                      ++.+++ +++++++|+.+.........+.||+|+++||.......+.+.+.   .++|+|.+++++.....
T Consensus        83 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A           83 VRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             HHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             HHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            999888 79999999988643322112379999999986444456666664   37899999988865433

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.74  E-value=1.9e-17  Score=129.68  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=100.3

Q ss_pred             eecCeeEEEcCCc-cccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHH
Q 043853           29 TLRGLTFQISANS-FFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDAC  106 (222)
Q Consensus        29 ~~~~~~~~~~~~~-f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~  106 (222)
                      ++.|..+..+++. +.+......+.+.+++....     ++.+|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|+
T Consensus        19 ~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~~-----~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~   93 (201)
T 2ift_A           19 LWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPYI-----HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLK   93 (201)
T ss_dssp             TTTTCEEECC---------CHHHHHHHHHHHHHH-----TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             eeCCcEecCCCCCCcCcCHHHHHHHHHHHHHHhc-----CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHH
Confidence            4667778776643 33333334444444443321     36799999999999999765544 59999999999999999


Q ss_pred             HHHHHcCC--CcEEEEeCchhchhhhcCCCCCC-CcEEEECCC-CCCccHHHHHHHHh---CCCCcEEEEeeCccc
Q 043853          107 RNAKLNNI--SNATFVQGDLNKIGGDFGNAFPK-PDIVISDPN-RPGMHMKLIKFLLK---LKAPRIVYVSCNPAT  175 (222)
Q Consensus       107 ~n~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~-fD~ii~~pp-~~~~~~~~~~~l~~---l~~~~~v~~~~~~~~  175 (222)
                      +|++.+++  ++++++++|+.++...+.  .+. ||+|+++|| ..+....+++.+..   ++|+|.+++++++.+
T Consensus        94 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A           94 KNLQTLKCSSEQAEVINQSSLDFLKQPQ--NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             HHHHHTTCCTTTEEEECSCHHHHTTSCC--SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             HHHHHhCCCccceEEEECCHHHHHHhhc--cCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            99999998  579999999988754321  247 999999999 33445667777743   789999999887755

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.73  E-value=7.2e-17  Score=132.21  Aligned_cols=146  Identities=20%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDA  105 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a  105 (222)
                      ..+++..|.++++.|.+.  +.++.+++.+.+.+.   .++.+|||+|||+|.+++.+++.  ..+++|+|+|+.+++.|
T Consensus        75 ~~f~~~~~~~~~~~~ipr--~~te~l~~~~l~~~~---~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a  149 (276)
T 2b3t_A           75 REFWSLPLFVSPATLIPR--PDTECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLA  149 (276)
T ss_dssp             EEETTEEEECCTTSCCCC--TTHHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHH
T ss_pred             eEECCceEEeCCCCcccC--chHHHHHHHHHHhcc---cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            467899999999999874  456777777777654   24679999999999999999865  45999999999999999


Q ss_pred             HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------------cHHHHHHH
Q 043853          106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------------HMKLIKFL  158 (222)
Q Consensus       106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------------~~~~~~~l  158 (222)
                      ++|++.+++++++++++|+.+...     .+.||+|+++||+...                           ...+++.+
T Consensus       150 ~~n~~~~~~~~v~~~~~d~~~~~~-----~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~  224 (276)
T 2b3t_A          150 QRNAQHLAIKNIHILQSDWFSALA-----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQS  224 (276)
T ss_dssp             HHHHHHHTCCSEEEECCSTTGGGT-----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHH
T ss_pred             HHHHHHcCCCceEEEEcchhhhcc-----cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHH
Confidence            999999998889999999987532     2479999999985432                           13334444


Q ss_pred             Hh-CCCCcEEEEeeCccchHhhHHHh
Q 043853          159 LK-LKAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       159 ~~-l~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      .. ++++|.+++.....+...-.+.+
T Consensus       225 ~~~LkpgG~l~~~~~~~~~~~~~~~l  250 (276)
T 2b3t_A          225 RNALVSGGFLLLEHGWQQGEAVRQAF  250 (276)
T ss_dssp             GGGEEEEEEEEEECCSSCHHHHHHHH
T ss_pred             HHhcCCCCEEEEEECchHHHHHHHHH
Confidence            33 78999998877654433333333

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.73  E-value=2.8e-16  Score=122.90  Aligned_cols=144  Identities=19%  Similarity=0.184  Sum_probs=107.9

Q ss_pred             ccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe
Q 043853           43 FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQ  121 (222)
Q Consensus        43 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~  121 (222)
                      ++.+....+.+...+...   ...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++|++.+++ ++++++
T Consensus        28 ~~~~~~~~~~l~~~~~~~---~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~  103 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSL---GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFI  103 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHT---TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEE
T ss_pred             ecCchHHHHHHHHHHHHc---CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEE
Confidence            556677777766555432   12347899999999999999998875 4799999999999999999998888 799999


Q ss_pred             CchhchhhhcCCCCCCCcEEEECCC----CCCccHHHHHHHHhCCCCcEEEEee--CccchHhhHHHhhccCCCCccCCC
Q 043853          122 GDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKFLLKLKAPRIVYVSC--NPATCARDLDYLCHGVGDQNIKGC  195 (222)
Q Consensus       122 ~d~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~~~~l~~l~~~~~v~~~~--~~~~~~~~~~~l~~~~~~~~~~~~  195 (222)
                      +|+.+++       ..||+|++|||    +.+....+++.+..+.  +.+|+.|  ++.+.....+.+.        +.|
T Consensus       104 ~d~~~~~-------~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~--------~~g  166 (207)
T 1wy7_A          104 GDVSEFN-------SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSW--------EHG  166 (207)
T ss_dssp             SCGGGCC-------CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHH--------HTT
T ss_pred             CchHHcC-------CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHH--------HCC
Confidence            9998853       27999999999    3344556666665544  5677777  6655555555554        568


Q ss_pred             eEEeEeeeeccC
Q 043853          196 YKLKSLQPVDMF  207 (222)
Q Consensus       196 ~~~~~~~~~~~~  207 (222)
                      |++..+...++.
T Consensus       167 ~~~~~~~~~~~~  178 (207)
T 1wy7_A          167 FVVTHRLTTKIE  178 (207)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CeEEEEEEEecC
Confidence            888877766543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.73  E-value=6.6e-17  Score=138.77  Aligned_cols=148  Identities=19%  Similarity=0.199  Sum_probs=107.5

Q ss_pred             cCceEEEeCCC--ceeeeecCeeEEEcCCc-----cccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHh
Q 043853           14 GEEEYTLYGKS--NITETLRGLTFQISANS-----FFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLA   86 (222)
Q Consensus        14 ~~~~~~~~g~~--~~~~~~~~~~~~~~~~~-----f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la   86 (222)
                      ..+.+.++|+.  .+...++|..|.++...     +|......    ..++...+    .++.+|||+|||+|.+++.++
T Consensus       162 ~~~~~~l~G~~~~~~~v~E~g~~f~vd~~~~~~tG~f~dqr~~----r~~l~~~~----~~g~~VLDlg~GtG~~sl~~a  233 (393)
T 4dmg_A          162 PERVGVVYGEVPEVLEVEEDGLRFPIPLALAQKTGYYLDQREN----RRLFEAMV----RPGERVLDVYSYVGGFALRAA  233 (393)
T ss_dssp             CCCCEEEEECCCSEEEEEETTEEEEEETTTCCTTSSCGGGHHH----HHHHHTTC----CTTCEEEEESCTTTHHHHHHH
T ss_pred             CcccceEecCCCCcEEEEECCEEEEEechhccccCcCCCHHHH----HHHHHHHh----cCCCeEEEcccchhHHHHHHH
Confidence            34567888874  57788899999999654     55542222    22233322    247899999999999999999


Q ss_pred             hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC-----------ccHHHH
Q 043853           87 RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG-----------MHMKLI  155 (222)
Q Consensus        87 ~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~-----------~~~~~~  155 (222)
                      +.+..|+|+|+|+.+++.|++|++.++++ .++.++|+.++.....   +.||+|++|||.-.           ....++
T Consensus       234 ~~ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~---~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll  309 (393)
T 4dmg_A          234 RKGAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLE---GPFHHVLLDPPTLVKRPEELPAMKRHLVDLV  309 (393)
T ss_dssp             HTTCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCC---CCEEEEEECCCCCCSSGGGHHHHHHHHHHHH
T ss_pred             HcCCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhc---CCCCEEEECCCcCCCCHHHHHHHHHHHHHHH
Confidence            88778999999999999999999999986 4577999998765432   24999999999521           112333


Q ss_pred             HH-HHhCCCCcEEE-EeeCc
Q 043853          156 KF-LLKLKAPRIVY-VSCNP  173 (222)
Q Consensus       156 ~~-l~~l~~~~~v~-~~~~~  173 (222)
                      .. ++.++|+|.++ .+|..
T Consensus       310 ~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          310 REALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             HHHHHTEEEEEEEEEEECCT
T ss_pred             HHHHHhcCCCCEEEEEECCC
Confidence            33 34478888876 55544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.73  E-value=1.5e-17  Score=132.04  Aligned_cols=145  Identities=14%  Similarity=0.085  Sum_probs=105.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.+++.+|+..+  .++|+|+|+.+++.|++++..++++|++++++|+.++..... +.+.||.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-PDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-CCCChheEEEe
Confidence            468999999999999999998654  799999999999999999999999899999999988643211 22579999887


Q ss_pred             --CCCC--------CccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCce
Q 043853          145 --PNRP--------GMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHI  213 (222)
Q Consensus       145 --pp~~--------~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  213 (222)
                        +|+.        -....+++.+.+ |+|+|.+++.++..+....+.....      -..+|+...  ..+.|+.+++.
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~  184 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMS------SIDGYKNLS--ESNDYVPRPAS  184 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH------TSTTEEECC--TTSSCBCCCTT
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH------hCCCccccc--CcCccCCCCCC
Confidence              3321        122356776654 8999999999998887777554332      023454433  34456666665


Q ss_pred             eEEEEEE
Q 043853          214 ECVCLLE  220 (222)
Q Consensus       214 ~~v~~~~  220 (222)
                      +.++.|+
T Consensus       185 ~~~t~fE  191 (218)
T 3dxy_A          185 RPVTKFE  191 (218)
T ss_dssp             SCCCTTC
T ss_pred             CCCcHHH
Confidence            5555443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.72  E-value=4.6e-17  Score=131.98  Aligned_cols=157  Identities=17%  Similarity=0.146  Sum_probs=112.6

Q ss_pred             eecCeeEEEcCCccccCCHHHHHHH-HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHH
Q 043853           29 TLRGLTFQISANSFFQTNTHQAEVL-YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        29 ~~~~~~~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~  107 (222)
                      ..++..+.++++.+|+++...+..+ .+++...+    .++.+|||+|||+|.+++.+++.+.+++|+|+|+.+++.|++
T Consensus        85 ~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~----~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~  160 (254)
T 2nxc_A           85 EGAEIPLVIEPGMAFGTGHHETTRLALKALARHL----RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CSSSEEEECCCC-----CCSHHHHHHHHHHHHHC----CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH
T ss_pred             CCCceEEEECCCccccCCCCHHHHHHHHHHHHhc----CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHH
Confidence            3567788999998888777655544 34444332    247899999999999999998877799999999999999999


Q ss_pred             HHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853          108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLCHG  186 (222)
Q Consensus       108 n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~  186 (222)
                      |++.++++ +++.++|+.+....     ..||+|+++++...+ ..++..+ +.++|+|.++++........++...++ 
T Consensus       161 n~~~~~~~-v~~~~~d~~~~~~~-----~~fD~Vv~n~~~~~~-~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~-  232 (254)
T 2nxc_A          161 NAKRNGVR-PRFLEGSLEAALPF-----GPFDLLVANLYAELH-AALAPRYREALVPGGRALLTGILKDRAPLVREAMA-  232 (254)
T ss_dssp             HHHHTTCC-CEEEESCHHHHGGG-----CCEEEEEEECCHHHH-HHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHH-
T ss_pred             HHHHcCCc-EEEEECChhhcCcC-----CCCCEEEECCcHHHH-HHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHH-
Confidence            99999987 99999999874321     479999999864332 3444444 447999999987654444555554433 


Q ss_pred             CCCCccCCCeEEeEeee
Q 043853          187 VGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       187 ~~~~~~~~~~~~~~~~~  203 (222)
                            +.||++.....
T Consensus       233 ------~~Gf~~~~~~~  243 (254)
T 2nxc_A          233 ------GAGFRPLEEAA  243 (254)
T ss_dssp             ------HTTCEEEEEEE
T ss_pred             ------HCCCEEEEEec
Confidence                  56888877654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.72  E-value=2.9e-16  Score=125.30  Aligned_cols=136  Identities=15%  Similarity=0.072  Sum_probs=101.6

Q ss_pred             CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|.++..+++.   ..+++|+|+|+.+++.+.++++.+  ++++++++|+.+.... ....+.||+|+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~-~~~~~~~D~V~  152 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKY-RMLIAMVDVIF  152 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGG-GGGCCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhh-cccCCcEEEEE
Confidence            34789999999999999999876   259999999999999999888876  5799999999874310 00124799999


Q ss_pred             ECCCCCCccHHHHH-HHHhCCCCcEEEEeeCccc----------hHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCC
Q 043853          143 SDPNRPGMHMKLIK-FLLKLKAPRIVYVSCNPAT----------CARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTP  211 (222)
Q Consensus       143 ~~pp~~~~~~~~~~-~l~~l~~~~~v~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~  211 (222)
                      ++++.......++. ..+.++|+|.+++++.+.+          +.++++.+.        +.||++.....++.||++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~--------~~Gf~~~~~~~~~~~~~~~  224 (233)
T 2ipx_A          153 ADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQ--------QENMKPQEQLTLEPYERDH  224 (233)
T ss_dssp             ECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTG--------GGTEEEEEEEECTTTSSSE
T ss_pred             EcCCCccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHH--------HCCCceEEEEecCCccCCc
Confidence            99984433334444 4556899999999886532          334444442        6799999988888888764


Q ss_pred             c
Q 043853          212 H  212 (222)
Q Consensus       212 ~  212 (222)
                      +
T Consensus       225 ~  225 (233)
T 2ipx_A          225 A  225 (233)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.72  E-value=2.3e-16  Score=125.35  Aligned_cols=171  Identities=19%  Similarity=0.162  Sum_probs=114.1

Q ss_pred             eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecc-cchhHHHHhhc-CCeEEEEeCCHHHHHH
Q 043853           27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCG-TGTIGLTLARW-VKHVYGYEVVPQAISD  104 (222)
Q Consensus        27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G-~G~~~~~la~~-~~~v~gvD~~~~~i~~  104 (222)
                      ..++++..|.+++..|.+.  ..++.+.  +...    ..++.+|||+||| +|.+++.+++. ..+++|+|+|+.+++.
T Consensus        23 ~~~~~~~~~~~~~~~~~p~--~~~~~l~--~~~~----~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~   94 (230)
T 3evz_A           23 AKALFGLDIEYHPKGLVTT--PISRYIF--LKTF----LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEY   94 (230)
T ss_dssp             HHHHHCCCCCCCTTSCCCC--HHHHHHH--HHTT----CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHH
T ss_pred             HHHhcCCceecCCCeEeCC--CchhhhH--hHhh----cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence            3456788888888888863  3333221  1111    1347899999999 99999999887 7899999999999999


Q ss_pred             HHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------cHHHHHHHHh-CC
Q 043853          105 ACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------HMKLIKFLLK-LK  162 (222)
Q Consensus       105 a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------~~~~~~~l~~-l~  162 (222)
                      |++|++.+++ +++++++|+..+... .  .+.||+|++|||....                     ...+++.+.. ++
T Consensus        95 a~~~~~~~~~-~v~~~~~d~~~~~~~-~--~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  170 (230)
T 3evz_A           95 ARRNIERNNS-NVRLVKSNGGIIKGV-V--EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN  170 (230)
T ss_dssp             HHHHHHHTTC-CCEEEECSSCSSTTT-C--CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEE
T ss_pred             HHHHHHHhCC-CcEEEeCCchhhhhc-c--cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC
Confidence            9999999998 799999997543221 1  2589999999984321                     1445555544 78


Q ss_pred             CCcEEEEeeC--ccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          163 APRIVYVSCN--PATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       163 ~~~~v~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      |+|.+++.+.  ........+.+.        +.||.+..+...    .......+.+|.|
T Consensus       171 pgG~l~~~~~~~~~~~~~~~~~l~--------~~g~~~~~~~~~----~g~~~~~~l~f~~  219 (230)
T 3evz_A          171 PGGKVALYLPDKEKLLNVIKERGI--------KLGYSVKDIKFK----VGTRWRHSLIFFK  219 (230)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHH--------HTTCEEEEEEEC----CCC-CEEEEEEEC
T ss_pred             CCeEEEEEecccHhHHHHHHHHHH--------HcCCceEEEEec----CCCeEEEEEEEec
Confidence            9999877542  222333334443        567877665442    2233444455544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.71  E-value=3e-16  Score=123.12  Aligned_cols=133  Identities=16%  Similarity=0.119  Sum_probs=99.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~  133 (222)
                      ..+...+...  ++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|++.++++ +++++++|+.+.....  
T Consensus        45 ~~~l~~l~~~--~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~--  120 (204)
T 3njr_A           45 ALTLAALAPR--RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL--  120 (204)
T ss_dssp             HHHHHHHCCC--TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS--
T ss_pred             HHHHHhcCCC--CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC--
Confidence            3344444433  4789999999999999999988889999999999999999999999998 7999999998854322  


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHH-hCCCCcEEEEeeCc-cchHhhHHHhhccCCCCccCCCeEEeEeeee
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLL-KLKAPRIVYVSCNP-ATCARDLDYLCHGVGDQNIKGCYKLKSLQPV  204 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  204 (222)
                        +.||+|++++..   ...+++.+. .++|+|.+++++.. .+.......+.        +.++++..+...
T Consensus       121 --~~~D~v~~~~~~---~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~--------~~g~~i~~i~~~  180 (204)
T 3njr_A          121 --PLPEAVFIGGGG---SQALYDRLWEWLAPGTRIVANAVTLESETLLTQLHA--------RHGGQLLRIDIA  180 (204)
T ss_dssp             --CCCSEEEECSCC---CHHHHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHH--------HHCSEEEEEEEE
T ss_pred             --CCCCEEEECCcc---cHHHHHHHHHhcCCCcEEEEEecCcccHHHHHHHHH--------hCCCcEEEEEee
Confidence              379999998743   222555554 48999998887754 44444444443        445777665543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.70  E-value=7.1e-16  Score=118.54  Aligned_cols=133  Identities=17%  Similarity=0.153  Sum_probs=92.8

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|+++++.+++++++++++|...+....   .+.||+|++++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~---~~~fD~v~~~~   97 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV---REPIRAAIFNL   97 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC---CSCEEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc---cCCcCEEEEeC
Confidence            457899999999999999999888899999999999999999999999888999998887754322   24799999985


Q ss_pred             CCCC--------cc---HHHHHHH-HhCCCCcEEEEeeCccc-----hHhhHHHhhccCCCCccCCCeEEeEeeeec
Q 043853          146 NRPG--------MH---MKLIKFL-LKLKAPRIVYVSCNPAT-----CARDLDYLCHGVGDQNIKGCYKLKSLQPVD  205 (222)
Q Consensus       146 p~~~--------~~---~~~~~~l-~~l~~~~~v~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  205 (222)
                      +.-.        ..   ..+++.+ +.++|+|.+++.+....     ....+..+....    -..+|++.......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~  170 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGL----DQRVFTAMLYQPLN  170 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHS----CTTTEEEEEEEESS
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhC----CCceEEEEEehhhc
Confidence            3211        11   1233333 45899999887764311     112222222111    14578888877655

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.70  E-value=2.4e-16  Score=124.20  Aligned_cols=128  Identities=12%  Similarity=0.033  Sum_probs=99.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.+++.+++..  .+++|+|+|+.+++.|++++..+++++++++++|+.++...+.  .+.||+|+++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~D~i~~~  118 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE--DGEIDRLYLN  118 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC--TTCCSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC--CCCCCEEEEE
Confidence            46899999999999999998874  5999999999999999999999998889999999988553222  2479999999


Q ss_pred             CCCCC----------ccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeee
Q 043853          145 PNRPG----------MHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       145 pp~~~----------~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  203 (222)
                      +|...          ....+++.+.. ++++|.+++.++......++.....       +.||+......
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~  181 (214)
T 1yzh_A          119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFS-------QYGMKLNGVWL  181 (214)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH-------HHTCEEEEEES
T ss_pred             CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-------HCCCeeeeccc
Confidence            87432          23567776654 8999999999877555555443322       45787766553

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.70  E-value=8.9e-16  Score=119.95  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=91.9

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      ..+...+...  ++.+|||+|||+|.+++.+++.+  .+++|+|+|+.+++.|++|++.+++++++++++|+.+..... 
T Consensus        30 ~~~l~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-  106 (204)
T 3e05_A           30 AVTLSKLRLQ--DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL-  106 (204)
T ss_dssp             HHHHHHTTCC--TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS-
T ss_pred             HHHHHHcCCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC-
Confidence            3444444433  47899999999999999999876  699999999999999999999999878999999997654422 


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCccchHhhH
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                         +.||+|+++.+.... ..+++.+ +.++|+|.+++.+........+
T Consensus       107 ---~~~D~i~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  151 (204)
T 3e05_A          107 ---PDPDRVFIGGSGGML-EEIIDAVDRRLKSEGVIVLNAVTLDTLTKA  151 (204)
T ss_dssp             ---CCCSEEEESCCTTCH-HHHHHHHHHHCCTTCEEEEEECBHHHHHHH
T ss_pred             ---CCCCEEEECCCCcCH-HHHHHHHHHhcCCCeEEEEEecccccHHHH
Confidence               479999999875544 4555554 4589999999887654333333

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.69  E-value=6.1e-16  Score=132.32  Aligned_cols=166  Identities=18%  Similarity=0.207  Sum_probs=117.4

Q ss_pred             CeeEEEcCCccccCCHH-HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH
Q 043853           32 GLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        32 ~~~~~~~~~~f~~~~~~-~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      +..|...++.|++.+.. .++.+.+.+...+.....++.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.|++|++
T Consensus       197 ~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~  276 (381)
T 3dmg_A          197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLE  276 (381)
T ss_dssp             EEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHH
T ss_pred             eEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence            34677789999876543 55666676666553222346799999999999999999888899999999999999999999


Q ss_pred             HcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC-------ccHHHHHHH-HhCCCCcEEEEeeCccchH-hhHH
Q 043853          111 LNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG-------MHMKLIKFL-LKLKAPRIVYVSCNPATCA-RDLD  181 (222)
Q Consensus       111 ~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~-------~~~~~~~~l-~~l~~~~~v~~~~~~~~~~-~~~~  181 (222)
                      .++++ ++++++|+.+....    .+.||+|++|||...       ....+++.+ +.++++|.+++.+++.... ..+.
T Consensus       277 ~~~~~-v~~~~~D~~~~~~~----~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~  351 (381)
T 3dmg_A          277 ANALK-AQALHSDVDEALTE----EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLE  351 (381)
T ss_dssp             HTTCC-CEEEECSTTTTSCT----TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHH
T ss_pred             HcCCC-eEEEEcchhhcccc----CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHH
Confidence            99875 89999999886542    258999999998542       123444443 3489999999988764322 2233


Q ss_pred             HhhccCCCCccCCCeEEeEeee
Q 043853          182 YLCHGVGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~~~  203 (222)
                      ......... -..+|++.....
T Consensus       352 ~~f~~v~~l-~~~gF~Vl~a~~  372 (381)
T 3dmg_A          352 EKFGAFQTL-KVAEYKVLFAEK  372 (381)
T ss_dssp             HHHSCCEEE-EESSSEEEEEEC
T ss_pred             HhhccEEEE-eCCCEEEEEEEE
Confidence            322211111 245777766544

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.69  E-value=8.4e-16  Score=122.53  Aligned_cols=130  Identities=22%  Similarity=0.195  Sum_probs=95.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|+++++.+  ++++++.+|+.+........ ..||+|+.+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~  150 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV-EKVDVIYED  150 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS-CCEEEEEEC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC-ccEEEEEEe
Confidence            57899999999999999998864  69999999999999999998765  57999999997732111111 479999998


Q ss_pred             CCCCCccHHHHHHHH-hCCCCcEEEEe----eCccc------hHhhHHHhhccCCCCccCCCeEEeEeeeeccC
Q 043853          145 PNRPGMHMKLIKFLL-KLKAPRIVYVS----CNPAT------CARDLDYLCHGVGDQNIKGCYKLKSLQPVDMF  207 (222)
Q Consensus       145 pp~~~~~~~~~~~l~-~l~~~~~v~~~----~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  207 (222)
                      ++..+....+++.+. .++|+|.+++.    +.+.+      ..+++..+.        +.||++.....++.+
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~--------~~Gf~~~~~~~~~~~  216 (230)
T 1fbn_A          151 VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILE--------AGGFKIVDEVDIEPF  216 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHH--------HHTEEEEEEEECTTT
T ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHHHHH--------HCCCEEEEEEccCCC
Confidence            876555566566554 58999999884    33322      235555443        568988887765544

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.69  E-value=5.4e-16  Score=121.19  Aligned_cols=156  Identities=15%  Similarity=0.128  Sum_probs=109.1

Q ss_pred             ecCeeEEEcCCc-cccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHH
Q 043853           30 LRGLTFQISANS-FFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACR  107 (222)
Q Consensus        30 ~~~~~~~~~~~~-f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~  107 (222)
                      ..+..+.++++. |.....+....+.+++...+    .++.+|||+|||+|.++..+++... +++|+|+|+.+++.|++
T Consensus        26 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~  101 (205)
T 3grz_A           26 KDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAM----VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEE  101 (205)
T ss_dssp             TTCEEEEESCC-----CCHHHHHHHHHHHHHHC----SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCceeEEecCCcccCCCCCccHHHHHHHHHHhc----cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            345677788775 44444445555566665543    2468999999999999999887644 99999999999999999


Q ss_pred             HHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853          108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLCHG  186 (222)
Q Consensus       108 n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~~~  186 (222)
                      ++..++.+++++.++|+.+...      +.||+|+++++...+ ..+++.+. .++++|.+++++.......++..+.. 
T Consensus       102 ~~~~~~~~~v~~~~~d~~~~~~------~~fD~i~~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~-  173 (205)
T 3grz_A          102 NAALNGIYDIALQKTSLLADVD------GKFDLIVANILAEIL-LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALA-  173 (205)
T ss_dssp             HHHHTTCCCCEEEESSTTTTCC------SCEEEEEEESCHHHH-HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHH-
T ss_pred             HHHHcCCCceEEEeccccccCC------CCceEEEECCcHHHH-HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHH-
Confidence            9999998779999999977532      489999999874322 23333332 37899998887544444444444433 


Q ss_pred             CCCCccCCCeEEeEeee
Q 043853          187 VGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       187 ~~~~~~~~~~~~~~~~~  203 (222)
                            +.||++.....
T Consensus       174 ------~~Gf~~~~~~~  184 (205)
T 3grz_A          174 ------ENSFQIDLKMR  184 (205)
T ss_dssp             ------HTTEEEEEEEE
T ss_pred             ------HcCCceEEeec
Confidence                  56787776543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.68  E-value=3.8e-16  Score=133.61  Aligned_cols=142  Identities=18%  Similarity=0.149  Sum_probs=109.1

Q ss_pred             eeeecCeeEEEc---------CCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--C-CeEEE
Q 043853           27 TETLRGLTFQIS---------ANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--V-KHVYG   94 (222)
Q Consensus        27 ~~~~~~~~~~~~---------~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~-~~v~g   94 (222)
                      ..+++|..|.++         .++||+++......+...+.........++.+|||+|||+|.+++.++..  + .+|++
T Consensus         3 ~i~E~g~~~~v~~~~~~~~~~~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~a   82 (392)
T 3axs_A            3 IVQEGIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYA   82 (392)
T ss_dssp             EEEETTEEEEECCCCSSCCTTCCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEE
T ss_pred             EEEECCEEEEEecccccccCCCCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEE
Confidence            467889999985         36899877777766654443333210023689999999999999988874  3 58999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCc--EEEEeCchhchhh-hcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEe
Q 043853           95 YEVVPQAISDACRNAKLNNISN--ATFVQGDLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus        95 vD~~~~~i~~a~~n~~~~~~~~--v~~~~~d~~~~~~-~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                      +|+++.+++.+++|++.|++++  ++++++|+.++.. .+.   ..||+|++||+  +....+++.+ ..++++|++|++
T Consensus        83 vDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~---~~fD~V~lDP~--g~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A           83 NDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWG---FGFDYVDLDPF--GTPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCS---SCEEEEEECCS--SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhC---CCCcEEEECCC--cCHHHHHHHHHHHhCCCCEEEEE
Confidence            9999999999999999999976  9999999988865 432   47999999995  3234566644 448999999999


Q ss_pred             eCc
Q 043853          171 CNP  173 (222)
Q Consensus       171 ~~~  173 (222)
                      |..
T Consensus       158 ~t~  160 (392)
T 3axs_A          158 ATD  160 (392)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            843

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=1.9e-15  Score=122.81  Aligned_cols=145  Identities=15%  Similarity=0.107  Sum_probs=102.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHH---cCCCc-EEEEeCchhchhhhc---CCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKL---NNISN-ATFVQGDLNKIGGDF---GNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~---~~~~~-v~~~~~d~~~~~~~~---~~~~~~  137 (222)
                      ++.+|||+|||+|.+++.+++..  .+++|+|+++.+++.|++|+..   +++++ ++++++|+.++....   .-....
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            46799999999999999998875  4999999999999999999998   88864 999999998873211   001247


Q ss_pred             CcEEEECCCCCCc--------------------cHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCe
Q 043853          138 PDIVISDPNRPGM--------------------HMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCY  196 (222)
Q Consensus       138 fD~ii~~pp~~~~--------------------~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  196 (222)
                      ||+|++|||+...                    ...+++.+. .++++|.+++...+.....-+..+.        + .|
T Consensus       116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~--------~-~~  186 (260)
T 2ozv_A          116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACG--------S-RF  186 (260)
T ss_dssp             EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHT--------T-TE
T ss_pred             cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHH--------h-cC
Confidence            9999999995422                    234444443 4799999988877765554445442        3 37


Q ss_pred             EEeEeeeeccCCCCCceeEEEEEE
Q 043853          197 KLKSLQPVDMFPHTPHIECVCLLE  220 (222)
Q Consensus       197 ~~~~~~~~~~~p~~~~~~~v~~~~  220 (222)
                      ....+.++.-.+..+..-.+..+.
T Consensus       187 ~~~~i~~v~~~~~~~~~~~lv~~~  210 (260)
T 2ozv_A          187 GGLEITLIHPRPGEDAVRMLVTAI  210 (260)
T ss_dssp             EEEEEEEEESSTTSCCCEEEEEEE
T ss_pred             CceEEEEEcCCCCCCceEEEEEEE
Confidence            666666655555555444444443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.67  E-value=1.2e-15  Score=130.34  Aligned_cols=137  Identities=19%  Similarity=0.196  Sum_probs=108.8

Q ss_pred             eeeeecCeeEEEcC-------CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEe
Q 043853           26 ITETLRGLTFQISA-------NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYE   96 (222)
Q Consensus        26 ~~~~~~~~~~~~~~-------~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD   96 (222)
                      ...++++..|.++.       ..||++.......+...+....     ++.+|||+|||+|.+++.++..  ..+|+++|
T Consensus         4 ~~~~Eg~~~~~~p~~~~~~~~~~F~np~~~~nr~l~~~~l~~~-----~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avD   78 (378)
T 2dul_A            4 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL-----NPKIVLDALSATGIRGIRFALETPAEEVWLND   78 (378)
T ss_dssp             EEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH-----CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEE
T ss_pred             eEEEeCcEEEEecCccccCCCCceeCCchHHHHHHHHHHHHHc-----CCCEEEECCCchhHHHHHHHHhCCCCeEEEEE
Confidence            45678899999875       6899877776666544444443     3789999999999999998875  34899999


Q ss_pred             CCHHHHHHHHHHHHHc---------------CCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHH-HHh
Q 043853           97 VVPQAISDACRNAKLN---------------NISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKF-LLK  160 (222)
Q Consensus        97 ~~~~~i~~a~~n~~~~---------------~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~-l~~  160 (222)
                      +|+.+++.+++|++.+               ++++++++++|+.++.....   ..||+|++|||..  ...+++. +..
T Consensus        79 i~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~---~~fD~I~lDP~~~--~~~~l~~a~~~  153 (378)
T 2dul_A           79 ISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERH---RYFHFIDLDPFGS--PMEFLDTALRS  153 (378)
T ss_dssp             SCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHST---TCEEEEEECCSSC--CHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhcc---CCCCEEEeCCCCC--HHHHHHHHHHh
Confidence            9999999999999999               88779999999988865431   4799999999843  3566664 455


Q ss_pred             CCCCcEEEEeeC
Q 043853          161 LKAPRIVYVSCN  172 (222)
Q Consensus       161 l~~~~~v~~~~~  172 (222)
                      ++++|++|++|.
T Consensus       154 lk~gG~l~vt~t  165 (378)
T 2dul_A          154 AKRRGILGVTAT  165 (378)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cCCCCEEEEEee
Confidence            899999999884

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.67  E-value=2.2e-15  Score=115.84  Aligned_cols=143  Identities=25%  Similarity=0.317  Sum_probs=104.8

Q ss_pred             ceeeeecCeeEEEc-CCccccCCH--HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHH
Q 043853           25 NITETLRGLTFQIS-ANSFFQTNT--HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQA  101 (222)
Q Consensus        25 ~~~~~~~~~~~~~~-~~~f~~~~~--~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~  101 (222)
                      .+...+.+..+.+. ..++++++.  ...+.    +.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~--~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~   86 (194)
T 1dus_A           13 IVEDILRGKKLKFKTDSGVFSYGKVDKGTKI----LVENVVVD--KDDDILDLGCGYGVIGIALADEVKSTTMADINRRA   86 (194)
T ss_dssp             EEEEEETTEEEEEEEETTSTTTTSCCHHHHH----HHHHCCCC--TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHH
T ss_pred             EEeeecCCCceEEEeCCCcCCccccchHHHH----HHHHcccC--CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHH
Confidence            45667788888774 445555432  33333    34444333  47899999999999999998887799999999999


Q ss_pred             HHHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCCCC---ccHHHHHHHH-hCCCCcEEEEeeCccc
Q 043853          102 ISDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG---MHMKLIKFLL-KLKAPRIVYVSCNPAT  175 (222)
Q Consensus       102 i~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~---~~~~~~~~l~-~l~~~~~v~~~~~~~~  175 (222)
                      ++.|++++..+++++  ++++.+|+.+...     .+.||+|++++|...   ....+++.+. .++++|.+++.+....
T Consensus        87 ~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  161 (194)
T 1dus_A           87 IKLAKENIKLNNLDNYDIRVVHSDLYENVK-----DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             HHHHHHHHHHTTCTTSCEEEEECSTTTTCT-----TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             HHHHHHHHHHcCCCccceEEEECchhcccc-----cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            999999999999887  9999999987543     247999999998542   1234444443 3789999888776544


Q ss_pred             hHh
Q 043853          176 CAR  178 (222)
Q Consensus       176 ~~~  178 (222)
                      ...
T Consensus       162 ~~~  164 (194)
T 1dus_A          162 GAK  164 (194)
T ss_dssp             HHH
T ss_pred             ChH
Confidence            444

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.66  E-value=1.8e-16  Score=121.76  Aligned_cols=142  Identities=13%  Similarity=0.116  Sum_probs=100.6

Q ss_pred             eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHH
Q 043853           28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDAC  106 (222)
Q Consensus        28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~  106 (222)
                      .++++..+.++++....+   ..+.+.+.+.+.+... .++.+|||+|||+|.+++.+++.. .+++|+|+|+.+++.|+
T Consensus         9 g~~~~~~~~~~~~~~~rp---~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~   84 (187)
T 2fhp_A            9 GEYGGRRLKALDGDNTRP---TTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIK   84 (187)
T ss_dssp             STTTTCBCCCCCCCSSCC---CCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             ccccCccccCCCCCCcCc---CHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence            355677777776543222   2233344444444211 246799999999999999877654 59999999999999999


Q ss_pred             HHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHH--H-hCCCCcEEEEeeCc
Q 043853          107 RNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFL--L-KLKAPRIVYVSCNP  173 (222)
Q Consensus       107 ~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l--~-~l~~~~~v~~~~~~  173 (222)
                      +|+..++++ +++++++|+.+....+....+.||+|+++||.. ......+..+  . .++|+|++++++..
T Consensus        85 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A           85 ENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             HHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             HHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            999999874 699999999886542211125799999999932 3445666665  2 26899999887654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.66  E-value=1.6e-16  Score=124.42  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             EEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC
Q 043853           36 QISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN  113 (222)
Q Consensus        36 ~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~  113 (222)
                      .++++.|.+.  +.++.+.+++.+.+... .++.+|||+|||+|.++..+++..  .+++|+|+|+.+++.|++|+..++
T Consensus         2 ~~~~~~~~p~--~~~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~   78 (215)
T 4dzr_A            2 EVGPDCLIPR--PDTEVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG   78 (215)
T ss_dssp             BCSGGGGSCC--HHHHHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------
T ss_pred             cCCCCccCCC--ccHHHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence            3456666653  56677788887776431 247899999999999999999874  399999999999999999999888


Q ss_pred             CCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853          114 ISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus       114 ~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      . +++++++|+.+.........+.||+|++|||.
T Consensus        79 ~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~  111 (215)
T 4dzr_A           79 A-VVDWAAADGIEWLIERAERGRPWHAIVSNPPY  111 (215)
T ss_dssp             -----CCHHHHHHHHHHHHHTTCCBSEEEECCCC
T ss_pred             C-ceEEEEcchHhhhhhhhhccCcccEEEECCCC
Confidence            7 79999999988443210112479999999984

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.65  E-value=9.1e-15  Score=115.24  Aligned_cols=162  Identities=14%  Similarity=0.149  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEE
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNIS-----NATFV  120 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~-----~v~~~  120 (222)
                      +..+...+++.+.+...  ++.+|||+|||+|.++..+++.+  .+++|+|+|+.+++.|++++..++++     +++++
T Consensus        12 ~~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~   89 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLKSV--NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF   89 (219)
T ss_dssp             CHHHHHHHHHHHHHHHT--TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEE
T ss_pred             cchHHHHHHHHHHHhhc--CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEE
Confidence            45555566666665433  36799999999999999999865  49999999999999999999877764     69999


Q ss_pred             eCchhchhhhcCCCCCCCcEEEECCCCCCcc----HHHHHHHHh-CCCCcEEEEeeCccc--------------------
Q 043853          121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----MKLIKFLLK-LKAPRIVYVSCNPAT--------------------  175 (222)
Q Consensus       121 ~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----~~~~~~l~~-l~~~~~v~~~~~~~~--------------------  175 (222)
                      ++|+......    .+.||+|++.....-+.    ..+++.+.+ ++|+|+++...+...                    
T Consensus        90 ~~d~~~~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (219)
T 3jwg_A           90 QSSLVYRDKR----FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFE  165 (219)
T ss_dssp             ECCSSSCCGG----GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTS
T ss_pred             eCcccccccc----cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceee
Confidence            9998654432    24799999875422111    345555544 789986665443211                    


Q ss_pred             -hHhhHH----HhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          176 -CARDLD----YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       176 -~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                       ...++.    .+++       ..||++.....-+..|.......++++.|+
T Consensus       166 ~~~~~l~~~~~~l~~-------~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~  210 (219)
T 3jwg_A          166 WTRKEFQTWAVKVAE-------KYGYSVRFLQIGEIDDEFGSPTQMGVFTLG  210 (219)
T ss_dssp             BCHHHHHHHHHHHHH-------HHTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred             ecHHHHHHHHHHHHH-------HCCcEEEEEecCCccccCCCCeEEEEEecc
Confidence             111122    3332       568998888777777777788888888774

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.65  E-value=4.4e-16  Score=130.08  Aligned_cols=167  Identities=18%  Similarity=0.112  Sum_probs=119.9

Q ss_pred             CeeE-EEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHH
Q 043853           32 GLTF-QISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACR  107 (222)
Q Consensus        32 ~~~~-~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~  107 (222)
                      +... .+..++|+|.+.  .+.+...+.+.+...  ++.+|||+|||+|.++..+++.+.   +|+|+|+|+.+++.|++
T Consensus        43 ~~~~~~l~~~~f~q~~~--~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~  118 (317)
T 1dl5_A           43 DIVLVSYDDGEEYSTSS--QPSLMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (317)
T ss_dssp             SSCEEEEECSSCEEEEC--CHHHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCcccccCCCcceecc--CHHHHHHHHHhcCCC--CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            4445 667777776532  233344555555443  478999999999999999987654   49999999999999999


Q ss_pred             HHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccc-hHhhHHHhhcc
Q 043853          108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPAT-CARDLDYLCHG  186 (222)
Q Consensus       108 n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~-~~~~~~~l~~~  186 (222)
                      +++.++++++++..+|+.+....    .+.||+|+++++...+...+   ...++|+|.+++++.+.. ....+..+.+ 
T Consensus       119 ~~~~~g~~~v~~~~~d~~~~~~~----~~~fD~Iv~~~~~~~~~~~~---~~~LkpgG~lvi~~~~~~~~~~~~~~~~~-  190 (317)
T 1dl5_A          119 NVERLGIENVIFVCGDGYYGVPE----FSPYDVIFVTVGVDEVPETW---FTQLKEGGRVIVPINLKLSRRQPAFLFKK-  190 (317)
T ss_dssp             HHHHTTCCSEEEEESCGGGCCGG----GCCEEEEEECSBBSCCCHHH---HHHEEEEEEEEEEBCBGGGTBCEEEEEEE-
T ss_pred             HHHHcCCCCeEEEECChhhcccc----CCCeEEEEEcCCHHHHHHHH---HHhcCCCcEEEEEECCCCcccceEEEEEE-
Confidence            99999988899999999875432    14799999998866555333   345689999999987643 1111221110 


Q ss_pred             CCCCccCCCeEEeEeeeeccCCCCCceeE
Q 043853          187 VGDQNIKGCYKLKSLQPVDMFPHTPHIEC  215 (222)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  215 (222)
                           ....|....+.+..++|..++++.
T Consensus       191 -----~~~~~~~~~i~~~~~~p~~~~~~~  214 (317)
T 1dl5_A          191 -----KDPYLVGNYKLETRFITAGGNLGN  214 (317)
T ss_dssp             -----ETTEEEEEEEEECCCCBCCGGGSC
T ss_pred             -----eCCcEEEEEeccEEEEEccCcccc
Confidence                 134578888888899999887653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.65  E-value=1e-15  Score=120.00  Aligned_cols=140  Identities=19%  Similarity=0.190  Sum_probs=106.1

Q ss_pred             HHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCC
Q 043853           57 IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFP  136 (222)
Q Consensus        57 i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~  136 (222)
                      +.+.+...  ++.+|||+|||+|.++..+++.+.+++++|+|+.+++.|++++..++.++++++.+|+.+....    .+
T Consensus        69 ~~~~l~~~--~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~  142 (210)
T 3lbf_A           69 MTELLELT--PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA----RA  142 (210)
T ss_dssp             HHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG----GC
T ss_pred             HHHhcCCC--CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc----CC
Confidence            44444333  4789999999999999999988889999999999999999999999988899999999875442    24


Q ss_pred             CCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCce
Q 043853          137 KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHI  213 (222)
Q Consensus       137 ~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  213 (222)
                      .||+|+++.....+...   ....++|+|.+++++....  ..+..+.+      ..++|....+.++.++|.+...
T Consensus       143 ~~D~i~~~~~~~~~~~~---~~~~L~pgG~lv~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~f~pl~~~~  208 (210)
T 3lbf_A          143 PFDAIIVTAAPPEIPTA---LMTQLDEGGILVLPVGEEH--QYLKRVRR------RGGEFIIDTVEAVRFVPLVKGE  208 (210)
T ss_dssp             CEEEEEESSBCSSCCTH---HHHTEEEEEEEEEEECSSS--CEEEEEEE------ETTEEEEEEEEECCCCBCCCSS
T ss_pred             CccEEEEccchhhhhHH---HHHhcccCcEEEEEEcCCc--eEEEEEEE------cCCeEEEEEeccEEEEEccCcc
Confidence            79999998654444332   3445789999998887621  11111111      2567888999999999988754

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.64  E-value=5.4e-15  Score=116.65  Aligned_cols=125  Identities=13%  Similarity=0.070  Sum_probs=94.3

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.+++.+|+.  ..+++|+|+|+.+++.|++++..+++++++++++|+.++...+.  .+.||.|+++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~--~~~~d~v~~~  115 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYLN  115 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC--cCCcCEEEEE
Confidence            4679999999999999999986  45999999999999999999999999889999999988643222  2479999886


Q ss_pred             CCCC----------CccHHHHHHHHh-CCCCcEEEEeeCccchHhhH-HHhhccCCCCccCCCeEEeEe
Q 043853          145 PNRP----------GMHMKLIKFLLK-LKAPRIVYVSCNPATCARDL-DYLCHGVGDQNIKGCYKLKSL  201 (222)
Q Consensus       145 pp~~----------~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~  201 (222)
                      .|..          -....+++.+.. |+|+|.+++.++........ ..+.        +.+|+....
T Consensus       116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~--------~~g~~~~~~  176 (213)
T 2fca_A          116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFS--------EYGLLLTYV  176 (213)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHH--------HHTCEEEEE
T ss_pred             CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH--------HCCCccccc
Confidence            5421          113566666654 89999999998765555443 3443        346665543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.64  E-value=2.8e-15  Score=124.35  Aligned_cols=146  Identities=19%  Similarity=0.264  Sum_probs=96.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      +.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++..++.++++++++|+.++..     
T Consensus        32 ~~i~~~~~~~--~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-----  104 (299)
T 2h1r_A           32 DKIIYAAKIK--SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-----  104 (299)
T ss_dssp             HHHHHHHCCC--TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC-----
T ss_pred             HHHHHhcCCC--CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc-----
Confidence            3344444433  478999999999999999998888999999999999999999988888789999999987643     


Q ss_pred             CCCCcEEEECCCCCCccHHHHHHHHhCCC-C-cEEEE-------------eeCccchHhhHHHhhccCCCCccCCCeEEe
Q 043853          135 FPKPDIVISDPNRPGMHMKLIKFLLKLKA-P-RIVYV-------------SCNPATCARDLDYLCHGVGDQNIKGCYKLK  199 (222)
Q Consensus       135 ~~~fD~ii~~pp~~~~~~~~~~~l~~l~~-~-~~v~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  199 (222)
                       ..||+|++|+|+....+.+...+..... . .++.+             ++...++..+.+.+++          .+..
T Consensus       105 -~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~~~y~~ls~~~~~~~~----------~~~~  173 (299)
T 2h1r_A          105 -PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCK----------VTKV  173 (299)
T ss_dssp             -CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTSTTCCHHHHHHHHHEE----------EEEE
T ss_pred             -ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCCcchhHHHHHHHHhhc----------eEEE
Confidence             3799999999976554444444432111 1 11111             2344555555555531          1222


Q ss_pred             EeeeeccCCCCCceeEEEE
Q 043853          200 SLQPVDMFPHTPHIECVCL  218 (222)
Q Consensus       200 ~~~~~~~~p~~~~~~~v~~  218 (222)
                      ...+...|+.+++++.+.+
T Consensus       174 ~~v~~~~F~p~p~V~s~vv  192 (299)
T 2h1r_A          174 CNVNRSSFNPPPKVDSVIV  192 (299)
T ss_dssp             EEECGGGEESCCSSCEEEE
T ss_pred             EEECchhcCCCCCCEEEEE
Confidence            2334458888998876554

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.64  E-value=5e-15  Score=126.44  Aligned_cols=163  Identities=17%  Similarity=0.139  Sum_probs=112.3

Q ss_pred             cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRN  108 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n  108 (222)
                      .+..+...++.|.+.+......+   +.+.+...  ++.+|||+|||+|.+++.+++.  ..+++|+|+|+.+++.|++|
T Consensus       191 ~~~~~~~~pg~Fs~~~~d~~~~~---ll~~l~~~--~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n  265 (375)
T 4dcm_A          191 TDWTIHNHANVFSRTGLDIGARF---FMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLN  265 (375)
T ss_dssp             TTEEEEECTTCTTCSSCCHHHHH---HHHTCCCS--CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred             CceEEEeCCCcccCCcccHHHHH---HHHhCccc--CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHH
Confidence            45677778899988665554432   33443322  3579999999999999999987  46999999999999999999


Q ss_pred             HHHcCCC---cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-------CccHHHHHHHH-hCCCCcEEEEeeCccc-h
Q 043853          109 AKLNNIS---NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-------GMHMKLIKFLL-KLKAPRIVYVSCNPAT-C  176 (222)
Q Consensus       109 ~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-------~~~~~~~~~l~-~l~~~~~v~~~~~~~~-~  176 (222)
                      ++.++++   ++++..+|+.+...     .+.||+|++|||..       .....+++.+. .++|+|.+++.++... .
T Consensus       266 ~~~ngl~~~~~v~~~~~D~~~~~~-----~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~  340 (375)
T 4dcm_A          266 VETNMPEALDRCEFMINNALSGVE-----PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDY  340 (375)
T ss_dssp             HHHHCGGGGGGEEEEECSTTTTCC-----TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCH
T ss_pred             HHHcCCCcCceEEEEechhhccCC-----CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCH
Confidence            9999875   48999999987432     24799999999932       12224455554 4899999998875433 2


Q ss_pred             HhhHHHhhccCCCCccCCCeEEeEeee
Q 043853          177 ARDLDYLCHGVGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       177 ~~~~~~l~~~~~~~~~~~~~~~~~~~~  203 (222)
                      ...+...........-..+|++.....
T Consensus       341 ~~~l~~~fg~~~~~a~~~~F~V~~~~~  367 (375)
T 4dcm_A          341 FHKLKKIFGNCTTIATNNKFVVLKAVK  367 (375)
T ss_dssp             HHHHHHHHSCCEEEEECSSEEEEEEEC
T ss_pred             HHHHHHhcCCEEEEeeCCCEEEEEEcC
Confidence            223333322222222255677766543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.64  E-value=1.4e-15  Score=129.78  Aligned_cols=125  Identities=23%  Similarity=0.264  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchh
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLN  125 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~  125 (222)
                      +.+.+...+..++ .  .++.+|||+|||+|.+++.++..+.  +++|+|+|+.+++.|++|++.+|++ ++++.++|+.
T Consensus       202 l~~~la~~l~~~~-~--~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          202 LKASIANAMIELA-E--LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             CCHHHHHHHHHHH-T--CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             ccHHHHHHHHHhh-c--CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            3445555555554 2  3478999999999999999998776  9999999999999999999999984 5999999999


Q ss_pred             chhhhcCCCCCCCcEEEECCCCCC----------ccHHHHHHHHhCCCCcEEEEeeCccchHhhH
Q 043853          126 KIGGDFGNAFPKPDIVISDPNRPG----------MHMKLIKFLLKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp~~~----------~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                      +++..    .+.||+|++|||+..          +...+.+.+.+.-+++.+++++++..+.+.+
T Consensus       279 ~~~~~----~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~~~~~~~~~~  339 (373)
T 3tm4_A          279 QLSQY----VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAI  339 (373)
T ss_dssp             GGGGT----CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEEEEEEEEESCHHHHHHHH
T ss_pred             hCCcc----cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence            87642    247999999999431          1245556665522677788888775555433

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.64  E-value=1e-14  Score=123.56  Aligned_cols=119  Identities=24%  Similarity=0.243  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN  125 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~  125 (222)
                      +.+.+...+..++...  ++..|||+|||+|.+++.++..+   .+++|+|+|+.+++.|++|++..+++++++.++|+.
T Consensus       187 l~~~la~~l~~~~~~~--~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~  264 (354)
T 3tma_A          187 LTPVLAQALLRLADAR--PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR  264 (354)
T ss_dssp             CCHHHHHHHHHHTTCC--TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG
T ss_pred             cCHHHHHHHHHHhCCC--CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh
Confidence            4445555566665443  47899999999999999988754   699999999999999999999999888999999999


Q ss_pred             chhhhcCCCCCCCcEEEECCCCCCc----------cHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          126 KIGGDFGNAFPKPDIVISDPNRPGM----------HMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp~~~~----------~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                      +++...    ..||+|++|||+...          ...+.+.+.+ ++|+|.+++.+..
T Consensus       265 ~~~~~~----~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          265 HLPRFF----PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             GGGGTC----CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             hCcccc----CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            876532    368999999995321          1345555544 6788888776654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.64  E-value=7.9e-16  Score=117.46  Aligned_cols=122  Identities=17%  Similarity=0.134  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhch
Q 043853           50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKI  127 (222)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~  127 (222)
                      ++.+.+.+.+.+... .++.+|||+|||+|.+++.+++.. .+++|+|+|+.+++.|+++++.++++ +++++++|+.+.
T Consensus        15 ~~~~~~~~~~~l~~~-~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (177)
T 2esr_A           15 SDKVRGAIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA   93 (177)
T ss_dssp             ---CHHHHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHhh-cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh
Confidence            344455555555311 246799999999999999888764 59999999999999999999999886 599999999886


Q ss_pred             hhhcCCCCCCCcEEEECCCCC-CccHHHHHHH---HhCCCCcEEEEeeCccc
Q 043853          128 GGDFGNAFPKPDIVISDPNRP-GMHMKLIKFL---LKLKAPRIVYVSCNPAT  175 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l---~~l~~~~~v~~~~~~~~  175 (222)
                      .....   +.||+|+++||.. .....+++.+   +.++++|++++++....
T Consensus        94 ~~~~~---~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           94 IDCLT---GRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HHHBC---SCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHhhc---CCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            44322   3699999999852 3335555666   34789999998886533

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.64  E-value=1.4e-16  Score=127.47  Aligned_cols=144  Identities=19%  Similarity=0.213  Sum_probs=107.5

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      ..+.+.+...  ++.+|||+|||+|.++..+++.. .+++++|+++.+++.|+++++..+++++++..+|+......   
T Consensus        81 ~~~~~~l~~~--~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---  155 (235)
T 1jg1_A           81 AIMLEIANLK--PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP---  155 (235)
T ss_dssp             HHHHHHHTCC--TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---
T ss_pred             HHHHHhcCCC--CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC---
Confidence            3344444333  47799999999999999998866 79999999999999999999999988899999998332221   


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCce
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHI  213 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  213 (222)
                       ...||+|+++.+...+...   ....++++|.+++++........+..+.+      .+++|+...+.+++++|.+.+.
T Consensus       156 -~~~fD~Ii~~~~~~~~~~~---~~~~L~pgG~lvi~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~f~p~~~~~  225 (235)
T 1jg1_A          156 -KAPYDVIIVTAGAPKIPEP---LIEQLKIGGKLIIPVGSYHLWQELLEVRK------TKDGIKIKNHGGVAFVPLIGEY  225 (235)
T ss_dssp             -GCCEEEEEECSBBSSCCHH---HHHTEEEEEEEEEEECSSSSCEEEEEEEE------ETTEEEEEEEEEECCCBCBSTT
T ss_pred             -CCCccEEEECCcHHHHHHH---HHHhcCCCcEEEEEEecCCCccEEEEEEE------eCCeEEEEEeccEEEEEccCCC
Confidence             1359999998875555443   34457899999999976554333332321      1467999999999999988763

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.64  E-value=3.1e-15  Score=119.38  Aligned_cols=147  Identities=16%  Similarity=0.191  Sum_probs=105.7

Q ss_pred             CCCCCCCeEEEEecccchhHHHHhhc-C--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           63 LRDDGSEIVLDLFCGTGTIGLTLARW-V--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        63 ~~~~~~~~vlDlg~G~G~~~~~la~~-~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      +...++++|||+|||+|.++..+|+. +  .+|+|+|+++.|++.++++++..  .|+..+.+|....... ....+.+|
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~-~~~~~~vD  149 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKY-RHLVEGVD  149 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGG-TTTCCCEE
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCcccc-ccccceEE
Confidence            34456999999999999999999985 2  48999999999999999987653  4789999998765432 22235799


Q ss_pred             EEEECCCCCCccHHHHHHHH-hCCCCcEEEEee----------CccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCC
Q 043853          140 IVISDPNRPGMHMKLIKFLL-KLKAPRIVYVSC----------NPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFP  208 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p  208 (222)
                      +|+++.+..+....++..+. .|+|+|.++++.          ....+.++.+.+.        +.||++.+...++-|+
T Consensus       150 vVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~--------~~GF~l~e~i~L~pf~  221 (233)
T 4df3_A          150 GLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLM--------DGGLEIKDVVHLDPFD  221 (233)
T ss_dssp             EEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHH--------HTTCCEEEEEECTTTS
T ss_pred             EEEEeccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHH--------HCCCEEEEEEccCCCC
Confidence            99999887665555665554 489999988764          2334455566664        6789888766555555


Q ss_pred             CCCceeEEEEEEe
Q 043853          209 HTPHIECVCLLEL  221 (222)
Q Consensus       209 ~~~~~~~v~~~~~  221 (222)
                      + .|.-.+.++.|
T Consensus       222 ~-~H~lv~~~~rR  233 (233)
T 4df3_A          222 R-DHAMIYAVMRR  233 (233)
T ss_dssp             T-TEEEEEECC--
T ss_pred             C-ceEEEEEEEeC
Confidence            4 47666666554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.63  E-value=7.5e-15  Score=114.31  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=92.1

Q ss_pred             ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEE
Q 043853           41 SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATF  119 (222)
Q Consensus        41 ~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~  119 (222)
                      .+++++......+...+... .  ..++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++|+.     ++++
T Consensus        28 ~~~~~~~~~~~~l~~~~~~~-~--~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~   99 (200)
T 1ne2_A           28 EQYPTDASTAAYFLIEIYND-G--NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNF   99 (200)
T ss_dssp             --CCCCHHHHHHHHHHHHHH-T--SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEE
T ss_pred             eecCCCHHHHHHHHHHHHhc-C--CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEE
Confidence            45666677777766555443 1  22468999999999999999987644 79999999999999999875     6899


Q ss_pred             EeCchhchhhhcCCCCCCCcEEEECCCC----CCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhh
Q 043853          120 VQGDLNKIGGDFGNAFPKPDIVISDPNR----PGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC  184 (222)
Q Consensus       120 ~~~d~~~~~~~~~~~~~~fD~ii~~pp~----~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~  184 (222)
                      +++|+.+++       +.||+|+++||.    .+....+++.+.+..  +.+|+.+++.+.....+.+.
T Consensus       100 ~~~d~~~~~-------~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~~~~~~  159 (200)
T 1ne2_A          100 MVADVSEIS-------GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNAKARDFLRREFS  159 (200)
T ss_dssp             EECCGGGCC-------CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEEEGGGHHHHHHHHH
T ss_pred             EECcHHHCC-------CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEcCchHHHHHHHHH
Confidence            999998853       379999999993    333345566555433  66888888777655555543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.62  E-value=2.1e-15  Score=121.82  Aligned_cols=123  Identities=15%  Similarity=0.031  Sum_probs=89.3

Q ss_pred             eeeeecCeeEEEcCCccccC--CHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHH
Q 043853           26 ITETLRGLTFQISANSFFQT--NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQA  101 (222)
Q Consensus        26 ~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~  101 (222)
                      +...++|..|.++++.|+|.  +.+.+..++..+...+.....++.+|||+|||+|.+++.++..  ..+++|+|+|+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~  101 (254)
T 2h00_A           22 LLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMC  101 (254)
T ss_dssp             HHHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHH
T ss_pred             HHHHcCCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHH
Confidence            34456788899999999885  2234444444333322211124679999999999999988765  5699999999999


Q ss_pred             HHHHHHHHHHcCCCc-EEEEeCchhch-hhhcCCC-CCCCcEEEECCCCC
Q 043853          102 ISDACRNAKLNNISN-ATFVQGDLNKI-GGDFGNA-FPKPDIVISDPNRP  148 (222)
Q Consensus       102 i~~a~~n~~~~~~~~-v~~~~~d~~~~-~~~~~~~-~~~fD~ii~~pp~~  148 (222)
                      ++.|++|++.+++++ ++++++|+.+. ...+... .+.||+|++|||+.
T Consensus       102 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~  151 (254)
T 2h00_A          102 FNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFF  151 (254)
T ss_dssp             HHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCc
Confidence            999999999999876 99999998762 2222211 14799999999854

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.62  E-value=7.2e-15  Score=112.75  Aligned_cols=115  Identities=25%  Similarity=0.360  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhh
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGD  130 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~  130 (222)
                      .+..++.+.+...  ++.+|||+|||+|.++..+++...+++++|+|+.+++.+++++..++. +++++.++|+.+....
T Consensus        20 ~~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   97 (192)
T 1l3i_A           20 EVRCLIMCLAEPG--KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK   97 (192)
T ss_dssp             HHHHHHHHHHCCC--TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT
T ss_pred             HHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc
Confidence            3444455555433  478999999999999999988778999999999999999999999988 5699999999873322


Q ss_pred             cCCCCCCCcEEEECCCCCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          131 FGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       131 ~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                          .+.||+|+++.+.... ..+++.+.. ++++|.+++....
T Consensus        98 ----~~~~D~v~~~~~~~~~-~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A           98 ----IPDIDIAVVGGSGGEL-QEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             ----SCCEEEEEESCCTTCH-HHHHHHHHHTEEEEEEEEEEECB
T ss_pred             ----CCCCCEEEECCchHHH-HHHHHHHHHhcCCCcEEEEEecC
Confidence                1379999999875444 555555544 7899888876654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.61  E-value=1.4e-14  Score=118.59  Aligned_cols=105  Identities=17%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             CCCeEEEEecccchhHHHHhhc--C-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--V-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|+.+..+++.  + .+|+|+|+|+.+++.+++|++.+++++++++++|+.++...+....+.||+|++
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~  162 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL  162 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEE
Confidence            4789999999999999988863  3 699999999999999999999999988999999998876432111247999999


Q ss_pred             CCCCCCc--------------------cHHHHHHHH-hCCCCcEEEEee
Q 043853          144 DPNRPGM--------------------HMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~--------------------~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      |||..+.                    ...+++.+. .++|+|.+++++
T Consensus       163 d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          163 DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             EECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            9997542                    245555443 478888765544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.61  E-value=4.8e-14  Score=107.20  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchh
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIG  128 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~  128 (222)
                      .+.+.+.+.+...  ++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+++++.++++ ++ ++++|..+..
T Consensus        12 ~~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~   88 (178)
T 3hm2_A           12 HVRALAISALAPK--PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF   88 (178)
T ss_dssp             HHHHHHHHHHCCC--TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG
T ss_pred             HHHHHHHHHhccc--CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh
Confidence            3344455555433  4789999999999999999886  459999999999999999999999987 69 8889986643


Q ss_pred             hhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          129 GDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                      ...   .+.||+|+++.+...  ..+++.+ +.++|+|.+++....
T Consensus        89 ~~~---~~~~D~i~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           89 DDV---PDNPDVIFIGGGLTA--PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             GGC---CSCCSEEEECC-TTC--TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             hcc---CCCCCEEEECCcccH--HHHHHHHHHhcCCCCEEEEEeec
Confidence            321   147999999886443  3455554 448999998877654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.60  E-value=2.4e-14  Score=119.52  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=69.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|..+..+++..   .+++|+|+|+.+++.+++|++.+++++++++++|+.++...    .+.||+|++
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~----~~~fD~Il~  193 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL----NVEFDKILL  193 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG----CCCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc----cccCCEEEE
Confidence            47899999999999999998752   58999999999999999999999998899999999887541    247999999


Q ss_pred             CCCCCC
Q 043853          144 DPNRPG  149 (222)
Q Consensus       144 ~pp~~~  149 (222)
                      |||..+
T Consensus       194 d~Pcsg  199 (315)
T 1ixk_A          194 DAPCTG  199 (315)
T ss_dssp             ECCTTS
T ss_pred             eCCCCC
Confidence            999543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.60  E-value=1.1e-14  Score=112.98  Aligned_cols=132  Identities=15%  Similarity=0.181  Sum_probs=93.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++.+|||+|||+|.++..+++..   .+++|+|+|+.+++.|+++++.+++ ++++++++|+.++....   .+.||+|+
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~v~   98 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI---DCPVKAVM   98 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC---CSCEEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc---cCCceEEE
Confidence            47899999999999999888752   4999999999999999999999988 56999999998875432   25799999


Q ss_pred             ECCCCCC-----------ccHHHHHHH-HhCCCCcEEEEeeCcc-----chHhhHHHhhccCCCCccCCCeEEeEeeeec
Q 043853          143 SDPNRPG-----------MHMKLIKFL-LKLKAPRIVYVSCNPA-----TCARDLDYLCHGVGDQNIKGCYKLKSLQPVD  205 (222)
Q Consensus       143 ~~pp~~~-----------~~~~~~~~l-~~l~~~~~v~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  205 (222)
                      +++|.-.           ....+++.+ +.++++|.+++.+...     .....+..+....    -..+|++.....+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~v~~~~~~~  174 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGV----DQKKFIVQRTDFIN  174 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTS----CTTTEEEEEEEETT
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhC----CCCcEEEEEEEecc
Confidence            9986410           012344444 4489999988775221     1122233332211    14578888877655

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.59  E-value=3.8e-14  Score=107.89  Aligned_cols=130  Identities=19%  Similarity=0.183  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI  127 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~  127 (222)
                      +.++.+.+++... .   .++.+|||+|||+|.++..+++.+ +++|+|+|+.+++.         ..+++++++|+.+.
T Consensus         8 ~~~~~l~~~l~~~-~---~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~   73 (170)
T 3q87_B            8 EDTYTLMDALERE-G---LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES---------HRGGNLVRADLLCS   73 (170)
T ss_dssp             HHHHHHHHHHHHH-T---CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT---------CSSSCEEECSTTTT
T ss_pred             ccHHHHHHHHHhh-c---CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc---------ccCCeEEECChhhh
Confidence            4555566654332 1   236799999999999999999888 99999999999988         23588999999874


Q ss_pred             hhhcCCCCCCCcEEEECCCCCC------------ccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCC
Q 043853          128 GGDFGNAFPKPDIVISDPNRPG------------MHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGC  195 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~pp~~~------------~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~  195 (222)
                      ...     +.||+|+++||...            ....+.+.+..+ |+|.+++.+.......++..+.+       +.|
T Consensus        74 ~~~-----~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~-------~~g  140 (170)
T 3q87_B           74 INQ-----ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLE-------ERG  140 (170)
T ss_dssp             BCG-----GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHH-------HTT
T ss_pred             ccc-----CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHH-------HCC
Confidence            322     47999999998431            123334444556 99999887766555566654443       568


Q ss_pred             eEEeEeeee
Q 043853          196 YKLKSLQPV  204 (222)
Q Consensus       196 ~~~~~~~~~  204 (222)
                      |+...+...
T Consensus       141 f~~~~~~~~  149 (170)
T 3q87_B          141 YGTRILKVR  149 (170)
T ss_dssp             CEEEEEEEE
T ss_pred             CcEEEEEee
Confidence            887776543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.59  E-value=3.9e-14  Score=110.54  Aligned_cols=136  Identities=15%  Similarity=0.143  Sum_probs=102.4

Q ss_pred             CCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+++++.++++++++.++|+.+...     .+.||+|+++.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~i~~~~  140 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-----EPPFDGVISRA  140 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-----CSCEEEEECSC
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc-----cCCcCEEEEec
Confidence            679999999999999999876  45999999999999999999999998889999999987652     24799999875


Q ss_pred             CCCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          146 NRPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       146 p~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      .  .....+++.+.. ++|+|.+++...... ..++..+.        . +|+......+. +|.......+.++++
T Consensus       141 ~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~~--------~-g~~~~~~~~~~-~~~~~~~~~~~~~~k  204 (207)
T 1jsx_A          141 F--ASLNDMVSWCHHLPGEQGRFYALKGQMP-EDEIALLP--------E-EYQVESVVKLQ-VPALDGERHLVVIKA  204 (207)
T ss_dssp             S--SSHHHHHHHHTTSEEEEEEEEEEESSCC-HHHHHTSC--------T-TEEEEEEEEEE-CC--CCEEEEEEEEE
T ss_pred             c--CCHHHHHHHHHHhcCCCcEEEEEeCCCc-hHHHHHHh--------c-CCceeeeeeec-cCCCCCceEEEEEEe
Confidence            3  223556666654 789999988766533 33444432        3 89888776653 777776677666665

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.59  E-value=1.8e-14  Score=114.41  Aligned_cols=119  Identities=9%  Similarity=0.037  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCc
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGD  123 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d  123 (222)
                      ....++.++.....  +.++.+|||+|||+|..++.+++.   ..+++++|+|+.+++.|+++++..+++  +++++++|
T Consensus        40 ~~~~~l~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd  117 (221)
T 3dr5_A           40 MTGQLLTTLAATTN--GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR  117 (221)
T ss_dssp             HHHHHHHHHHHHSC--CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC
T ss_pred             HHHHHHHHHHHhhC--CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC
Confidence            34444455544432  112459999999999999999875   459999999999999999999999986  59999999


Q ss_pred             hhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          124 LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       124 ~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      +.+....+.  .+.||+|+++.+......-+....+.++|+|+++++.
T Consensus       118 a~~~l~~~~--~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          118 PLDVMSRLA--NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             HHHHGGGSC--TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             HHHHHHHhc--CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            988765542  2589999999876554333344445689999988643

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.59  E-value=9.8e-14  Score=109.21  Aligned_cols=159  Identities=12%  Similarity=0.105  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEe
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNIS-----NATFVQ  121 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~-----~v~~~~  121 (222)
                      ..+...+++.+.+...  ++.+|||+|||+|.++..+++.+  .+++|+|+|+.+++.|++++..++++     ++++++
T Consensus        13 ~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~   90 (217)
T 3jwh_A           13 LNQQRMNGVVAALKQS--NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ   90 (217)
T ss_dssp             HHHHHHHHHHHHHHHT--TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHHHhc--CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe
Confidence            3444455565555433  36799999999999999999865  49999999999999999999887775     699999


Q ss_pred             CchhchhhhcCCCCCCCcEEEECCCCCCcc----HHHHHHHHh-CCCCcEEEEeeCccc---------------------
Q 043853          122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMH----MKLIKFLLK-LKAPRIVYVSCNPAT---------------------  175 (222)
Q Consensus       122 ~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----~~~~~~l~~-l~~~~~v~~~~~~~~---------------------  175 (222)
                      +|+......    .+.||+|++.....-+.    ..+++.+.+ ++|+|++++..+...                     
T Consensus        91 ~d~~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (217)
T 3jwh_A           91 GALTYQDKR----FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEW  166 (217)
T ss_dssp             CCTTSCCGG----GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCB
T ss_pred             CCccccccc----CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccccccccccccccccc
Confidence            998654332    24799999876422111    345555544 789997765543211                     


Q ss_pred             hHhhHH----HhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEE
Q 043853          176 CARDLD----YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE  220 (222)
Q Consensus       176 ~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~  220 (222)
                      ...++.    .+++       ..||++.....-+..|.......+..|.
T Consensus       167 ~~~~l~~~~~~~~~-------~~Gf~v~~~~~g~~~~~~g~~~q~~~~~  208 (217)
T 3jwh_A          167 TRSQFQNWANKITE-------RFAYNVQFQPIGEADPEVGSPTQMAVFI  208 (217)
T ss_dssp             CHHHHHHHHHHHHH-------HSSEEEEECCCSCCCSSSCCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHH-------HcCceEEEEecCCccCCCCchheeEeee
Confidence            111122    3332       5689888876666666666555555543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.59  E-value=6.7e-14  Score=113.06  Aligned_cols=145  Identities=17%  Similarity=0.122  Sum_probs=104.2

Q ss_pred             CCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+|||+|..++.++..  ..+|+++|+|+.+++.|++|++.+++++++++++|+.++..... ..+.||+|++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~-~~~~fD~I~s  157 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAG-HREAYARAVA  157 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTT-TTTCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccc-cCCCceEEEE
Confidence            35789999999999999999876  45999999999999999999999999889999999988754210 1247999999


Q ss_pred             CCCCCCccHHHHHHHHh-CCCCcEEEEeeCc--cchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEE
Q 043853          144 DPNRPGMHMKLIKFLLK-LKAPRIVYVSCNP--ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE  220 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~-l~~~~~v~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~  220 (222)
                      ..-. . ...+++.+.. ++++|.+++....  ......+....+       ..|+++.....+ ..|.......+.++.
T Consensus       158 ~a~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~-------~~G~~~~~~~~~-~~p~~~~~R~l~~~~  227 (249)
T 3g89_A          158 RAVA-P-LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALE-------RLGGRLGEVLAL-QLPLSGEARHLVVLE  227 (249)
T ss_dssp             ESSC-C-HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHH-------HHTEEEEEEEEE-ECTTTCCEEEEEEEE
T ss_pred             CCcC-C-HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHH-------HcCCeEEEEEEe-eCCCCCCcEEEEEEE
Confidence            7431 2 3566666544 7898887654432  222222322221       458888888877 467766666666665


Q ss_pred             e
Q 043853          221 L  221 (222)
Q Consensus       221 ~  221 (222)
                      +
T Consensus       228 k  228 (249)
T 3g89_A          228 K  228 (249)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.59  E-value=2.8e-14  Score=117.24  Aligned_cols=155  Identities=14%  Similarity=0.093  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeC-CHHHHHHHHHHH-----HHcCCC-----c
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEV-VPQAISDACRNA-----KLNNIS-----N  116 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~-~~~~i~~a~~n~-----~~~~~~-----~  116 (222)
                      .++.+.+++.......  ++.+|||+|||+|.+++.+++.+. +|+|+|+ |+.+++.|++|+     +.+++.     +
T Consensus        63 ~~~~l~~~l~~~~~~~--~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~  140 (281)
T 3bzb_A           63 GARALADTLCWQPELI--AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRAS  140 (281)
T ss_dssp             HHHHHHHHHHHCGGGT--TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CC
T ss_pred             HHHHHHHHHHhcchhc--CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCC
Confidence            3556667776654322  367999999999999999888665 9999999 899999999999     555553     5


Q ss_pred             EEEEeCchhchhhhcCC--CCCCCcEEEE-CCCC-CCccHHHHHHHHh-CC---C--CcEEEEeeCccc------hHhhH
Q 043853          117 ATFVQGDLNKIGGDFGN--AFPKPDIVIS-DPNR-PGMHMKLIKFLLK-LK---A--PRIVYVSCNPAT------CARDL  180 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~--~~~~fD~ii~-~pp~-~~~~~~~~~~l~~-l~---~--~~~v~~~~~~~~------~~~~~  180 (222)
                      +++...|+.+....+..  ....||+|++ +... ......+++.+.. ++   +  +|.+++.+.+..      ....+
T Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~  220 (281)
T 3bzb_A          141 PKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFF  220 (281)
T ss_dssp             CEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHH
T ss_pred             eEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHH
Confidence            88886665443221110  1247999987 5543 2234566666655 77   8  998877665532      12223


Q ss_pred             HHhhccCCCCccCCC-eEEeEe----eeeccCCCCCce
Q 043853          181 DYLCHGVGDQNIKGC-YKLKSL----QPVDMFPHTPHI  213 (222)
Q Consensus       181 ~~l~~~~~~~~~~~~-~~~~~~----~~~~~~p~~~~~  213 (222)
                      ..+.        +.| |++..+    ....+||.+.+.
T Consensus       221 ~~l~--------~~G~f~v~~~~~~~~~~~~f~~~~~~  250 (281)
T 3bzb_A          221 RLVN--------ADGALIAEPWLSPLQMDPMFPDDPGD  250 (281)
T ss_dssp             HHHH--------HSTTEEEEEEECCC------------
T ss_pred             HHHH--------hcCCEEEEEeccccccccccccCCcc
Confidence            3332        567 888776    334567766554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.59  E-value=1.9e-14  Score=113.82  Aligned_cols=103  Identities=15%  Similarity=0.071  Sum_probs=83.0

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCC-CCCcEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAF-PKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~-~~fD~ii  142 (222)
                      +.+|||+|||+|..++.+++.   ..+++++|+++.+++.|++++...++++ ++++++|+.+....+.... ..||+|+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            689999999999999999986   5699999999999999999999999876 9999999987654432111 4699999


Q ss_pred             ECCCCCCccHHHHHH-HHhCCCCcEEEEee
Q 043853          143 SDPNRPGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      ++++.... ..+++. .+.++|+|++++..
T Consensus       139 ~d~~~~~~-~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          139 IDADKQNN-PAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             ECSCGGGH-HHHHHHHHHTCCTTCEEEEES
T ss_pred             EcCCcHHH-HHHHHHHHHhcCCCcEEEEeC
Confidence            99885544 444444 45589999888654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.58  E-value=5.3e-14  Score=112.74  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=102.0

Q ss_pred             CCCeEEEEecccchhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|..++.++.  ...+++|+|+|+.+++.|+++++.+++++++++++|+.++..... ..+.||+|++.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~V~~~  148 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKD-VRESYDIVTAR  148 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTT-TTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccccc-ccCCccEEEEe
Confidence            467999999999999998885  356999999999999999999999999889999999988653110 12479999997


Q ss_pred             CCCCCccHHHHHHHH-hCCCCcEEEEeeCccch--HhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          145 PNRPGMHMKLIKFLL-KLKAPRIVYVSCNPATC--ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       145 pp~~~~~~~~~~~l~-~l~~~~~v~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      .. .. ...+++.+. .++|+|.+++.......  ...+....+       ..|+++.....+. +|.......+.++++
T Consensus       149 ~~-~~-~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~-------~~g~~~~~~~~~~-~~~~~~~~~l~~~~k  218 (240)
T 1xdz_A          149 AV-AR-LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAIT-------TLGGELENIHSFK-LPIEESDRNIMVIRK  218 (240)
T ss_dssp             CC-SC-HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHH-------HTTEEEEEEEEEE-CTTTCCEEEEEEEEE
T ss_pred             cc-CC-HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHH-------HcCCeEeEEEEEe-cCCCCCceEEEEEEe
Confidence            63 22 356666664 47899998876543221  112222221       5688888777654 666555555555543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.58  E-value=4.3e-14  Score=123.14  Aligned_cols=126  Identities=19%  Similarity=0.230  Sum_probs=92.7

Q ss_pred             CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|+.++.+|..   ...|+|+|+|+.+++.+++|++.+|++++.++++|+.++.....   +.||.|+
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~---~~FD~Il  180 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS---GFFDRIV  180 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHT---TCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhcc---ccCCEEE
Confidence            35789999999999999988864   35899999999999999999999999899999999988764322   4799999


Q ss_pred             ECCCCCCcc------------------------HHHHHHHH-hCCCCcEE-EEeeC--ccchHhhHHHhhccCCCCccCC
Q 043853          143 SDPNRPGMH------------------------MKLIKFLL-KLKAPRIV-YVSCN--PATCARDLDYLCHGVGDQNIKG  194 (222)
Q Consensus       143 ~~pp~~~~~------------------------~~~~~~l~-~l~~~~~v-~~~~~--~~~~~~~~~~l~~~~~~~~~~~  194 (222)
                      +|||+++..                        ..+++.+. .++|+|.+ |.+|.  +..-...+..+++       .+
T Consensus       181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~-------~~  253 (456)
T 3m4x_A          181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVE-------NY  253 (456)
T ss_dssp             EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHH-------HS
T ss_pred             ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHH-------hC
Confidence            999965432                        13333333 36887765 55553  4444455555553       33


Q ss_pred             CeEEeEe
Q 043853          195 CYKLKSL  201 (222)
Q Consensus       195 ~~~~~~~  201 (222)
                      ++++..+
T Consensus       254 ~~~l~~~  260 (456)
T 3m4x_A          254 PVTIEEI  260 (456)
T ss_dssp             SEEEECC
T ss_pred             CCEEEec
Confidence            4665554

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.58  E-value=3.8e-14  Score=114.32  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=83.4

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +.+|||+|||+|..++.+++.   ..+++++|+|+.+++.|+++++..+++ +++++.+|+.+....+. ....||+|++
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~  142 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFI  142 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEE
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEE
Confidence            689999999999999999986   569999999999999999999999987 59999999988655432 2247999999


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      +.+.......+....+.++|+|+++++.
T Consensus       143 d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          143 DADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             CSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            9875544333333445589999888654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.58  E-value=8.9e-14  Score=110.34  Aligned_cols=119  Identities=14%  Similarity=0.132  Sum_probs=87.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|+|+|||+|.+++.+++.++  +|+|+|+|+.+++.|++|++.+++++ +++..+|+.+....    .++||+|++
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~----~~~~D~Ivi   90 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE----TDQVSVITI   90 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG----GGCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc----CcCCCEEEE
Confidence            578999999999999999998764  89999999999999999999999975 99999999765432    126998876


Q ss_pred             CCCCCCccHH----HHHHHH-hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853          144 DPNRPGMHMK----LIKFLL-KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       144 ~pp~~~~~~~----~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  202 (222)
                      .    ++...    +++... .+++++.++++..  +-...+...+.       ++||.+..-.
T Consensus        91 a----G~Gg~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~-------~~Gf~i~~e~  141 (225)
T 3kr9_A           91 A----GMGGRLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQ-------DHGFQIVAES  141 (225)
T ss_dssp             E----EECHHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHH-------HTTEEEEEEE
T ss_pred             c----CCChHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHH-------HCCCEEEEEE
Confidence            3    33333    333322 3678888887765  33444443332       6788777644

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.57  E-value=3.7e-14  Score=119.70  Aligned_cols=164  Identities=21%  Similarity=0.171  Sum_probs=107.4

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-------CeEEEEeCCHHHHHHHHHHHHHc
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-------KHVYGYEVVPQAISDACRNAKLN  112 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-------~~v~gvD~~~~~i~~a~~n~~~~  112 (222)
                      +.|| ++......+...+..+..  +.++.+|||+|||+|.+++.+++..       .+++|+|+++.+++.|+.|+..+
T Consensus       106 g~~~-TP~~i~~~~~~ll~~l~~--~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~  182 (344)
T 2f8l_A          106 NHQM-TPDSIGFIVAYLLEKVIQ--KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ  182 (344)
T ss_dssp             GGCC-CCHHHHHHHHHHHHHHHT--TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CcCC-ChHHHHHHHHHHHHHhcC--CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC
Confidence            3444 334444443333333222  1246799999999999999887643       58999999999999999999988


Q ss_pred             CCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc--------------------cHHHHHH-HHhCCCCcEEEEee
Q 043853          113 NISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM--------------------HMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       113 ~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~--------------------~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      ++ ++++.++|..+...     ...||+|++|||....                    ...++.. +..++++|.+.+.+
T Consensus       183 g~-~~~i~~~D~l~~~~-----~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          183 RQ-KMTLLHQDGLANLL-----VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             TC-CCEEEESCTTSCCC-----CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CC-CceEEECCCCCccc-----cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence            88 68999999876431     2479999999993111                    0134444 44578888876555


Q ss_pred             -----CccchHhhHH-HhhccCCCCccCCCeEEe-EeeeeccCCCCCceeEEEEEEe
Q 043853          172 -----NPATCARDLD-YLCHGVGDQNIKGCYKLK-SLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       172 -----~~~~~~~~~~-~l~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                           .... ...+. .+.        +.++... -.-+-++|+.+....+|.+|.+
T Consensus       257 p~~~~~~~~-~~~ir~~l~--------~~~~~~~ii~lp~~~F~~~~~~~~i~vl~k  304 (344)
T 2f8l_A          257 PDAMFGTSD-FAKVDKFIK--------KNGHIEGIIKLPETLFKSEQARKSILILEK  304 (344)
T ss_dssp             EGGGGGSTT-HHHHHHHHH--------HHEEEEEEEECCGGGSCC-CCCEEEEEEEE
T ss_pred             CchhcCCch-HHHHHHHHH--------hCCeEEEeeeCChhhccCCCCceEEEEEEC
Confidence                 2222 23333 332        3444322 2235578999889999999876

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=1.1e-14  Score=114.38  Aligned_cols=141  Identities=17%  Similarity=0.140  Sum_probs=104.6

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      .+.+.+...  ++.+|||+|||+|.++..+++..   .+++++|+|+.+++.|++++...+.+++++..+|+......  
T Consensus        68 ~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--  143 (215)
T 2yxe_A           68 MMCELLDLK--PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP--  143 (215)
T ss_dssp             HHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG--
T ss_pred             HHHHhhCCC--CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC--
Confidence            344444333  47899999999999999988764   69999999999999999999998888899999998654321  


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCc
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPH  212 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  212 (222)
                        ...||+|+++.+...+..   .....++++|.+++.+.+..  ..+..+.+      ...+|....+.+..++|..++
T Consensus       144 --~~~fD~v~~~~~~~~~~~---~~~~~L~pgG~lv~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~  210 (215)
T 2yxe_A          144 --LAPYDRIYTTAAGPKIPE---PLIRQLKDGGKLLMPVGRYL--QRLVLAEK------RGDEIIIKDCGPVAFVPLVGK  210 (215)
T ss_dssp             --GCCEEEEEESSBBSSCCH---HHHHTEEEEEEEEEEESSSS--EEEEEEEE------ETTEEEEEEEEEECCCBCBST
T ss_pred             --CCCeeEEEECCchHHHHH---HHHHHcCCCcEEEEEECCCC--cEEEEEEE------eCCEEEEEEeccEEEEecccc
Confidence              247999999986544443   33445789999998887653  33333321      134688888888888898775


Q ss_pred             e
Q 043853          213 I  213 (222)
Q Consensus       213 ~  213 (222)
                      .
T Consensus       211 ~  211 (215)
T 2yxe_A          211 E  211 (215)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.57  E-value=2.8e-14  Score=115.07  Aligned_cols=112  Identities=21%  Similarity=0.178  Sum_probs=87.1

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGG  129 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~  129 (222)
                      ...+...+...  ++.+|||+|||+|.++..+++.   ..+++++|+|+.+++.|+++++.+++++ ++++++|+.+...
T Consensus        82 ~~~i~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  159 (255)
T 3mb5_A           82 AALIVAYAGIS--PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE  159 (255)
T ss_dssp             HHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred             HHHHHHhhCCC--CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence            34455555433  4789999999999999999887   5699999999999999999999999877 9999999986532


Q ss_pred             hcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCcc
Q 043853          130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA  174 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~  174 (222)
                           ...||+|++++|..  ..-+....+.++|+|.+++.+...
T Consensus       160 -----~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          160 -----EENVDHVILDLPQP--ERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             -----CCSEEEEEECSSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             -----CCCcCEEEECCCCH--HHHHHHHHHHcCCCCEEEEEECCH
Confidence                 24799999999844  222333344578999988776543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.57  E-value=1e-14  Score=118.62  Aligned_cols=112  Identities=17%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC----CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV----KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIG  128 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~----~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~  128 (222)
                      .+.+..++....+++.+|||+|||+|.+++.+++..    .+++|+|+|+.|++.|+++++..+.. +++++++|+.+++
T Consensus        57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~  136 (261)
T 4gek_A           57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA  136 (261)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc
Confidence            344444443333468899999999999999998753    38999999999999999999987765 5999999998865


Q ss_pred             hhcCCCCCCCcEEEECCCCCCc----cHHHHHHH-HhCCCCcEEEEee
Q 043853          129 GDFGNAFPKPDIVISDPNRPGM----HMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~pp~~~~----~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .      +.||+|+++-.-.-+    ...+++.+ +.|+|||.++++.
T Consensus       137 ~------~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          137 I------ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             C------CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c------cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            3      369999887531111    12344444 4489999988764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.57  E-value=3.8e-14  Score=115.92  Aligned_cols=130  Identities=14%  Similarity=0.043  Sum_probs=94.1

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHc-CCCcEEEEeCchhchhhhc
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLN-NISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~-~~~~v~~~~~d~~~~~~~~  131 (222)
                      .+...+..  .++.+|||+|||+|.++..+++.   ..+++|+|+++.+++.|+++++.+ +.+++++.++|+.+...  
T Consensus       101 ~~~~~~~~--~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--  176 (275)
T 1yb2_A          101 YIIMRCGL--RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--  176 (275)
T ss_dssp             -----CCC--CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--
T ss_pred             HHHHHcCC--CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--
Confidence            44444433  34789999999999999999876   569999999999999999999988 87789999999987322  


Q ss_pred             CCCCCCCcEEEECCCCCCccHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853          132 GNAFPKPDIVISDPNRPGMHMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  202 (222)
                         .+.||+|++++|..   ..+++.+. .++|+|.+++.+.......++.....       +.||......
T Consensus       177 ---~~~fD~Vi~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~-------~~Gf~~~~~~  235 (275)
T 1yb2_A          177 ---DQMYDAVIADIPDP---WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLS-------ASGMHHLETV  235 (275)
T ss_dssp             ---SCCEEEEEECCSCG---GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSG-------GGTEEEEEEE
T ss_pred             ---CCCccEEEEcCcCH---HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH-------HCCCeEEEEE
Confidence               24799999998743   24445444 47899999888876544444433322       4577666544

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.56  E-value=2.1e-14  Score=113.78  Aligned_cols=163  Identities=14%  Similarity=0.086  Sum_probs=109.8

Q ss_pred             ecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-------eEEEEeCCHHHH
Q 043853           30 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-------HVYGYEVVPQAI  102 (222)
Q Consensus        30 ~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-------~v~gvD~~~~~i  102 (222)
                      +++..+.+..+.... .+.....+.+    .+.....++.+|||+|||+|.++..+++...       +++++|+++.++
T Consensus        48 y~d~~~~~~~~~~~~-~p~~~~~~~~----~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~  122 (227)
T 2pbf_A           48 YIDTPVYISHGVTIS-APHMHALSLK----RLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV  122 (227)
T ss_dssp             TSSSCEEEETTEEEC-CHHHHHHHHH----HHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHH
T ss_pred             CCCCccccCCCCccC-ChHHHHHHHH----HHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHH
Confidence            344455555554333 2333333333    3321123478999999999999999988653       999999999999


Q ss_pred             HHHHHHHHHcC-----CCcEEEEeCchhchh----hhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          103 SDACRNAKLNN-----ISNATFVQGDLNKIG----GDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       103 ~~a~~n~~~~~-----~~~v~~~~~d~~~~~----~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      +.|+++++.++     .++++++.+|+.+..    ..    ...||+|+++.+...+...+   ...++++|.+++.+.+
T Consensus       123 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~----~~~fD~I~~~~~~~~~~~~~---~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          123 NFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE----LGLFDAIHVGASASELPEIL---VDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH----HCCEEEEEECSBBSSCCHHH---HHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCccccccCCEEEEECChHhcccccCcc----CCCcCEEEECCchHHHHHHH---HHhcCCCcEEEEEEcc
Confidence            99999999887     567999999998753    21    14799999998765554333   3446899998888754


Q ss_pred             cchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCC
Q 043853          174 ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTP  211 (222)
Q Consensus       174 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~  211 (222)
                      ... ..+..+.+      .+++|....+..+.++|.+.
T Consensus       196 ~~~-~~~~~~~~------~~~~~~~~~~~~~~~~pl~~  226 (227)
T 2pbf_A          196 DYT-QVLYEITK------KNGKIIKDRLFDVCFVSLKK  226 (227)
T ss_dssp             TTE-EEEEEEEC------SCC-CEEEEEEEECCCBCCC
T ss_pred             CCc-eEEEEEEE------eCCeEEEEEeccEEEEeccC
Confidence            211 11111110      25678888898999998764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.56  E-value=2.5e-14  Score=114.21  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=82.0

Q ss_pred             CCeEEEEecccchhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhh-hcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGG-DFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~-~~~~~~~~fD~ii~  143 (222)
                      +.+|||+|||+|..++.+++  ...+++++|+++.+++.|+++++..+++ +++++.+|+.+... .+   .+.||+|++
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~  148 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFI  148 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEE
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEE
Confidence            68999999999999999998  3569999999999999999999999986 69999999988655 33   248999999


Q ss_pred             CCCCCCccHHHHHHH-HhCCCCcEEEE
Q 043853          144 DPNRPGMHMKLIKFL-LKLKAPRIVYV  169 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l-~~l~~~~~v~~  169 (222)
                      +.+.... ..+++.+ +.++|+|++++
T Consensus       149 ~~~~~~~-~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          149 DAAKAQS-KKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             ETTSSSH-HHHHHHHGGGEEEEEEEEE
T ss_pred             cCcHHHH-HHHHHHHHHhcCCCeEEEE
Confidence            9876554 4555555 45899999887

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.56  E-value=2.4e-14  Score=113.28  Aligned_cols=104  Identities=13%  Similarity=0.056  Sum_probs=82.9

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCC--CCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAF--PKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~--~~fD~i  141 (222)
                      +.+|||+|||+|..++.+++.   ..+++++|+++.+++.|+++++..++++ ++++++|+.+....+....  +.||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            679999999999999999986   5699999999999999999999999875 9999999987654432111  479999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      +++++......-+....+.++|+|+++++.
T Consensus       145 ~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          145 YIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             EECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            999885544333333445589999988654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.55  E-value=2.1e-13  Score=108.48  Aligned_cols=119  Identities=16%  Similarity=0.102  Sum_probs=88.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|+|+|||+|.+++.+++.++  +|+|+|+++.+++.|++|++.+++++ +++.++|+.+....    .+.||+|++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~----~~~~D~Ivi   96 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE----ADNIDTITI   96 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG----GGCCCEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc----ccccCEEEE
Confidence            478999999999999999998764  89999999999999999999999976 99999999887542    126999875


Q ss_pred             CCCCCCccHHHHHHHH-----hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853          144 DPNRPGMHMKLIKFLL-----KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~-----~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  202 (222)
                          .++...++..+.     .+++++.++++...  -...+...+.       ++||.+..-.
T Consensus        97 ----aGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~L~-------~~Gf~i~~E~  147 (230)
T 3lec_A           97 ----CGMGGRLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKWLA-------ANDFEIVAED  147 (230)
T ss_dssp             ----EEECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHH-------HTTEEEEEEE
T ss_pred             ----eCCchHHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHHHH-------HCCCEEEEEE
Confidence                244444333322     26777888877653  2444443332       6778777644

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.55  E-value=6.2e-14  Score=110.92  Aligned_cols=105  Identities=14%  Similarity=0.156  Sum_probs=82.1

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCC--CCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGN--AFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~--~~~~fD~i  141 (222)
                      +.+|||+|||+|..++.+++.   ..+++++|+++.+++.|++|++.+++++ ++++++|+.+....+..  ..+.||+|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            679999999999999999874   4599999999999999999999999874 99999999886554321  11479999


Q ss_pred             EECCCCCCccH--HHHHHHHhCCCCcEEEEeeC
Q 043853          142 ISDPNRPGMHM--KLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       142 i~~pp~~~~~~--~~~~~l~~l~~~~~v~~~~~  172 (222)
                      +++.+......  .+++.++.++|+|+++++..
T Consensus       139 ~~d~~~~~~~~~~~~~~~~~~LkpgG~lv~~~~  171 (221)
T 3u81_A          139 FLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNV  171 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCCCTTCEEEESCC
T ss_pred             EEcCCcccchHHHHHHHhccccCCCeEEEEeCC
Confidence            99986443322  23333345899999887653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.55  E-value=1e-12  Score=108.10  Aligned_cols=105  Identities=11%  Similarity=0.092  Sum_probs=81.3

Q ss_pred             HHhcCCCCCCCeEEEEecccchhHH-HHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCC
Q 043853           59 DCAGLRDDGSEIVLDLFCGTGTIGL-TLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFP  136 (222)
Q Consensus        59 ~~~~~~~~~~~~vlDlg~G~G~~~~-~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~  136 (222)
                      .++.+.  ++++|||+|||+|.++. .+|+ .+.+|+|+|+|+.+++.|+++++..++++++++++|+.+++.      +
T Consensus       116 ~la~l~--~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d------~  187 (298)
T 3fpf_A          116 ALGRFR--RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDG------L  187 (298)
T ss_dssp             HHTTCC--TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGG------C
T ss_pred             HHcCCC--CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCC------C
Confidence            344444  48999999999998764 5565 367999999999999999999999888779999999988642      4


Q ss_pred             CCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeC
Q 043853          137 KPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       137 ~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~  172 (222)
                      .||+|++.-.... ...+.+.+ +.++|+|.+.+...
T Consensus       188 ~FDvV~~~a~~~d-~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          188 EFDVLMVAALAEP-KRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CCSEEEECTTCSC-HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CcCEEEECCCccC-HHHHHHHHHHHcCCCcEEEEEcC
Confidence            8999998754222 24555555 44899999887653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.54  E-value=2.4e-14  Score=115.40  Aligned_cols=125  Identities=20%  Similarity=0.224  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHc---CCCc---
Q 043853           47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLN---NISN---  116 (222)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~---~~~~---  116 (222)
                      ..++..+++.+.+.+.  ..++.+|||+|||+|.+++.+++.    ..+++|+|+|+.+++.|++|+..+   ++++   
T Consensus        33 ~~la~~l~~~~l~~~~--~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~  110 (250)
T 1o9g_A           33 VRLATEIFQRALARLP--GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTAREL  110 (250)
T ss_dssp             HHHHHHHHHHHHHTSS--CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc--cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccch
Confidence            4455566666555432  224679999999999999988876    358999999999999999998876   4432   


Q ss_pred             -----------------------EE-------------EEeCchhchhhhcC-CCCCCCcEEEECCCCCCc---------
Q 043853          117 -----------------------AT-------------FVQGDLNKIGGDFG-NAFPKPDIVISDPNRPGM---------  150 (222)
Q Consensus       117 -----------------------v~-------------~~~~d~~~~~~~~~-~~~~~fD~ii~~pp~~~~---------  150 (222)
                                             ++             +.++|+.+...... .....||+|+++||....         
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~  190 (250)
T 1o9g_A          111 ERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPG  190 (250)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCH
T ss_pred             hhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccc
Confidence                                   56             99999877542100 011379999999983211         


Q ss_pred             --cHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          151 --HMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       151 --~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                        ...+++.+ +.++|+|.+++..+.
T Consensus       191 ~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          191 QPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             cHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence              12445544 348999999886544

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.53  E-value=1.2e-13  Score=110.48  Aligned_cols=103  Identities=24%  Similarity=0.380  Sum_probs=81.7

Q ss_pred             EcCCccccCCHH-HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-
Q 043853           37 ISANSFFQTNTH-QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-  114 (222)
Q Consensus        37 ~~~~~f~~~~~~-~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-  114 (222)
                      .+..+|++.++. ....+...+....     ++.+|||+|||+|.+++.+++.+.+++|+|+|+.+++.|++|++.+++ 
T Consensus        52 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~  126 (241)
T 3gdh_A           52 LDREGWFSVTPEKIAEHIAGRVSQSF-----KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIA  126 (241)
T ss_dssp             CCHHHHHHCCCHHHHHHHHHHHHHHS-----CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCG
T ss_pred             ecccceeecCHHHHHHHHHHHhhhcc-----CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            344466655444 3444444444332     378999999999999999998889999999999999999999999998 


Q ss_pred             CcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC
Q 043853          115 SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG  149 (222)
Q Consensus       115 ~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~  149 (222)
                      ++++++++|+.++...     ..||+|+++||...
T Consensus       127 ~~~~~~~~d~~~~~~~-----~~~D~v~~~~~~~~  156 (241)
T 3gdh_A          127 DKIEFICGDFLLLASF-----LKADVVFLSPPWGG  156 (241)
T ss_dssp             GGEEEEESCHHHHGGG-----CCCSEEEECCCCSS
T ss_pred             cCeEEEECChHHhccc-----CCCCEEEECCCcCC
Confidence            4799999999887632     48999999998543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.53  E-value=3.4e-13  Score=110.45  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...++ ++++++++|+.+.+..   ..+.||+|+++.
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~v~~~~  144 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH---LETPVDLILFHA  144 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG---CSSCEEEEEEES
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh---cCCCceEEEECc
Confidence            467999999999999999998888999999999999999999998888 4699999999887632   125899999975


Q ss_pred             CC--CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          146 NR--PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       146 p~--~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..  ..-...+++.+.+ ++|+|.+++..
T Consensus       145 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          145 VLEWVADPRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             CGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhcccCHHHHHHHHHHHcCCCeEEEEEE
Confidence            41  1112455555544 78999988765

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.53  E-value=5.7e-14  Score=122.65  Aligned_cols=147  Identities=20%  Similarity=0.245  Sum_probs=100.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|+.+..+++..   .+++|+|+|+.+++.+++|++.+|+++++++++|+.+....+.  .+.||+|++
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~--~~~fD~Vl~  336 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIG--EEVADKVLL  336 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSC--SSCEEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhc--cCCCCEEEE
Confidence            47899999999999999998742   5899999999999999999999999889999999987653221  147999999


Q ss_pred             CCCCCCcc------------------------HHHHHHHHh-CCCCcEE-EEeeCc--cchHhhHHHhhccCCCCccCCC
Q 043853          144 DPNRPGMH------------------------MKLIKFLLK-LKAPRIV-YVSCNP--ATCARDLDYLCHGVGDQNIKGC  195 (222)
Q Consensus       144 ~pp~~~~~------------------------~~~~~~l~~-l~~~~~v-~~~~~~--~~~~~~~~~l~~~~~~~~~~~~  195 (222)
                      |||+.+..                        ..+++.+.. ++|+|.+ |.+|..  ......+..+.+.      ..+
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~------~~~  410 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV------HPE  410 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH------CSS
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh------CCC
Confidence            99975542                        344554444 6787766 555533  3333344444330      225


Q ss_pred             eEEeEeee----------eccCCCCCcee--EEEEEEe
Q 043853          196 YKLKSLQP----------VDMFPHTPHIE--CVCLLEL  221 (222)
Q Consensus       196 ~~~~~~~~----------~~~~p~~~~~~--~v~~~~~  221 (222)
                      |++..+.+          +.++|+..+.+  -+++|+|
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k  448 (450)
T 2yxl_A          411 FKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEK  448 (450)
T ss_dssp             CEECCCCSSSEECSSTTCEEECHHHHSSCCEEEEEEEC
T ss_pred             CEEeecccccccccCCCeEEECCCCCCCCceEEEEEEE
Confidence            66655432          45667654433  2455554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.53  E-value=4.7e-14  Score=120.64  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---------------------------------------
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---------------------------------------   89 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---------------------------------------   89 (222)
                      +.+.+...+..+....  ++..++|++||+|++++.+|..+                                       
T Consensus       178 l~e~LAaall~l~~~~--~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  255 (384)
T 3ldg_A          178 IKENMAAAIILLSNWF--PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI  255 (384)
T ss_dssp             CCHHHHHHHHHHTTCC--TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CcHHHHHHHHHHhCCC--CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence            5566666666666544  37899999999999999777532                                       


Q ss_pred             -CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCC---Cc-------cHHHHHH
Q 043853           90 -KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP---GM-------HMKLIKF  157 (222)
Q Consensus        90 -~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~---~~-------~~~~~~~  157 (222)
                       .+++|+|+|+.+++.|++|++.+|+++ +++.++|+.++...     ..||+|++|||+.   +.       ...+.+.
T Consensus       256 ~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-----~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~  330 (384)
T 3ldg_A          256 QLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-----KINGVLISNPPYGERLLDDKAVDILYNEMGET  330 (384)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-----CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-----CCcCEEEECCchhhccCCHHHHHHHHHHHHHH
Confidence             249999999999999999999999976 99999999987542     3799999999953   21       1222233


Q ss_pred             HHhCCCCcEEEEeeCccchHhhH
Q 043853          158 LLKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       158 l~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                      ++. .+++.+++-+....+.+.+
T Consensus       331 lk~-~~g~~~~iit~~~~l~~~~  352 (384)
T 3ldg_A          331 FAP-LKTWSQFILTNDTDFEQKF  352 (384)
T ss_dssp             HTT-CTTSEEEEEESCTTHHHHH
T ss_pred             Hhh-CCCcEEEEEECCHHHHHHh
Confidence            333 3466666555554444444

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.53  E-value=4.1e-13  Score=108.65  Aligned_cols=144  Identities=17%  Similarity=0.152  Sum_probs=98.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH-----------------cCCCcEEEEeCchhchhh
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL-----------------NNISNATFVQGDLNKIGG  129 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~-----------------~~~~~v~~~~~d~~~~~~  129 (222)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|+++...                 ....+++++++|+.++..
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~  147 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR  147 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence            467999999999999999999888999999999999999876531                 012469999999988765


Q ss_pred             hcCCCCCCCcEEEECCCCC----CccHHHHHHHHh-CCCCcEEEEee-C--------c--cchHhhHHHhhccCCCCccC
Q 043853          130 DFGNAFPKPDIVISDPNRP----GMHMKLIKFLLK-LKAPRIVYVSC-N--------P--ATCARDLDYLCHGVGDQNIK  193 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~----~~~~~~~~~l~~-l~~~~~v~~~~-~--------~--~~~~~~~~~l~~~~~~~~~~  193 (222)
                      ..   .+.||+|++.....    .....++..+.+ ++|+|.+++.+ .        +  .....++..+.        .
T Consensus       148 ~~---~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l--------~  216 (252)
T 2gb4_A          148 AN---IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLF--------G  216 (252)
T ss_dssp             GC---CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHH--------T
T ss_pred             cc---CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHh--------h
Confidence            31   14799999754211    122345555544 79999886432 1        0  01123444443        3


Q ss_pred             CCeEEeEeeeeccCCC-------CCceeEEEEEEe
Q 043853          194 GCYKLKSLQPVDMFPH-------TPHIECVCLLEL  221 (222)
Q Consensus       194 ~~~~~~~~~~~~~~p~-------~~~~~~v~~~~~  221 (222)
                      .+|++......+.+..       ....+.+..|.|
T Consensus       217 ~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  251 (252)
T 2gb4_A          217 TKCSMQCLEEVDALEERHKAWGLDYLFEKLYLLTE  251 (252)
T ss_dssp             TTEEEEEEEEEECCCGGGTTTTCSCCEEEEEEEEE
T ss_pred             CCeEEEEEeccccchhhhhhcCcchhhheeEEEec
Confidence            4698888877665442       334677777765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.53  E-value=3.2e-13  Score=108.12  Aligned_cols=111  Identities=21%  Similarity=0.124  Sum_probs=86.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++...+++++|+++.+++.|+++...+++ +++++..+|+.+...    +...||+|++++
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~v~~~~  166 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV----PEGIFHAAFVDV  166 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC----CTTCBSEEEECS
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc----CCCcccEEEECC
Confidence            478999999999999999888777999999999999999999999888 569999999987541    124799999998


Q ss_pred             CCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHh
Q 043853          146 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       146 p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      |..  ..-+....+.++++|.+++.+.......++...
T Consensus       167 ~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  202 (248)
T 2yvl_A          167 REP--WHYLEKVHKSLMEGAPVGFLLPTANQVIKLLES  202 (248)
T ss_dssp             SCG--GGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHH
T ss_pred             cCH--HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Confidence            733  222333344589999998888754444444433

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.52  E-value=2.8e-13  Score=108.57  Aligned_cols=117  Identities=16%  Similarity=0.147  Sum_probs=86.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.+++.+++.++  +|+|+|+|+.+++.|++|++.+++++ +++.++|+.+....    .+.||+|++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~----~~~~D~Ivi   96 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK----KDAIDTIVI   96 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG----GGCCCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc----cccccEEEE
Confidence            478999999999999999998764  89999999999999999999999976 99999999886542    125999876


Q ss_pred             CCCCCCccHHHHHHHH-----hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeE
Q 043853          144 DPNRPGMHMKLIKFLL-----KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS  200 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~-----~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  200 (222)
                          .++...++..+.     .+++++.++++...  -...+...+.       +.||.+..
T Consensus        97 ----agmGg~lI~~IL~~~~~~L~~~~~lIlq~~~--~~~~lr~~L~-------~~Gf~i~~  145 (244)
T 3gnl_A           97 ----AGMGGTLIRTILEEGAAKLAGVTKLILQPNI--AAWQLREWSE-------QNNWLITS  145 (244)
T ss_dssp             ----EEECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHH-------HHTEEEEE
T ss_pred             ----eCCchHHHHHHHHHHHHHhCCCCEEEEEcCC--ChHHHHHHHH-------HCCCEEEE
Confidence                244444333322     26677777777643  3344443332       56777644

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.52  E-value=1.2e-13  Score=120.42  Aligned_cols=114  Identities=19%  Similarity=0.203  Sum_probs=86.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|+.++.+|+..   ..|+|+|+|+.+++.+++|++.+|++ ++++++|+.++.....   +.||+|++
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~---~~FD~Il~  176 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFG---TYFHRVLL  176 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHC---SCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhcc---ccCCEEEE
Confidence            47899999999999999988642   48999999999999999999999998 9999999988764222   47999999


Q ss_pred             CCCCCCcc------------------------HHHHHHHHh-CCCCcEE-EEeeC--ccchHhhHHHhh
Q 043853          144 DPNRPGMH------------------------MKLIKFLLK-LKAPRIV-YVSCN--PATCARDLDYLC  184 (222)
Q Consensus       144 ~pp~~~~~------------------------~~~~~~l~~-l~~~~~v-~~~~~--~~~~~~~~~~l~  184 (222)
                      |||+.+..                        ..+++.+.. ++|+|.+ |.+|.  +..-...+..+.
T Consensus       177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l  245 (464)
T 3m6w_A          177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL  245 (464)
T ss_dssp             ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHH
Confidence            99964321                        344444433 6887775 55553  344444455554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.52  E-value=1.4e-13  Score=107.71  Aligned_cols=144  Identities=14%  Similarity=0.080  Sum_probs=95.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc------------CCCcEEEEeCchhchhhhcCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN------------NISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~------------~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|+++....            ...+++++++|+.+++...   
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~---   98 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD---   98 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH---
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc---
Confidence            4789999999999999999988889999999999999999876431            1346899999998876431   


Q ss_pred             CCCCcEEEECCCCCCc----cHHHHHHHH-hCCCCcEE-EEeeCcc----------chHhhHHHhhccCCCCccCCCeEE
Q 043853          135 FPKPDIVISDPNRPGM----HMKLIKFLL-KLKAPRIV-YVSCNPA----------TCARDLDYLCHGVGDQNIKGCYKL  198 (222)
Q Consensus       135 ~~~fD~ii~~pp~~~~----~~~~~~~l~-~l~~~~~v-~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~  198 (222)
                      .+.||+|++......+    ...+++.+. .++|+|.+ ++.....          ....++..+.        ..||++
T Consensus        99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~--------~~gf~i  170 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVM--------SGNWEV  170 (203)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTS--------CSSEEE
T ss_pred             CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHh--------cCCcEE
Confidence            0379999975421111    123444444 48999973 3332211          0123444443        338999


Q ss_pred             eEeeeeccCCCCC---------ceeEEEEEEe
Q 043853          199 KSLQPVDMFPHTP---------HIECVCLLEL  221 (222)
Q Consensus       199 ~~~~~~~~~p~~~---------~~~~v~~~~~  221 (222)
                      ..+...+.....+         ..+.+..|+|
T Consensus       171 ~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~  202 (203)
T 1pjz_A          171 TKVGGQDTLHSSARGLKAGLERMDEHVYVLER  202 (203)
T ss_dssp             EEEEESSCTTTCHHHHHHTCSSCCEEEEEEEE
T ss_pred             EEeccccchhcchhhhhcCcchhheeEEEEEe
Confidence            8888776544322         2466665554

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.52  E-value=1.8e-13  Score=109.41  Aligned_cols=141  Identities=12%  Similarity=0.041  Sum_probs=99.8

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.|++++...+..+++++.+|+.++...    .+.||+|+++.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE----PDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC----SSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCC----CCCEEEEEEcc
Confidence            4789999999999999988876 459999999999999999998776544699999998776532    24799999985


Q ss_pred             CCCCc----cHHHHHHHH-hCCCCcEEEEeeCcc-----------c---hHhhHHHhhccCCCCccCCCeEEeEeeeecc
Q 043853          146 NRPGM----HMKLIKFLL-KLKAPRIVYVSCNPA-----------T---CARDLDYLCHGVGDQNIKGCYKLKSLQPVDM  206 (222)
Q Consensus       146 p~~~~----~~~~~~~l~-~l~~~~~v~~~~~~~-----------~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (222)
                      ....+    ...+++.+. .++|+|.+++.....           .   ...++..+.+       +.||++........
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~aGf~~~~~~~~~~  227 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC-------SAGLSLLAEERQEN  227 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHH-------HTTCCEEEEEECCS
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHH-------HcCCeEEEeeecCC
Confidence            31111    124445443 378999988754211           0   1233443333       67899999988888


Q ss_pred             CCCCCceeEEEE
Q 043853          207 FPHTPHIECVCL  218 (222)
Q Consensus       207 ~p~~~~~~~v~~  218 (222)
                      +|.....-.+.+
T Consensus       228 ~~~~~~~v~~~~  239 (241)
T 2ex4_A          228 LPDEIYHVYSFA  239 (241)
T ss_dssp             CCTTSCEEEEEE
T ss_pred             Ccchhhhhhhhe
Confidence            887554433433

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.52  E-value=6.2e-14  Score=120.03  Aligned_cols=94  Identities=22%  Similarity=0.364  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--------------------------------------
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--------------------------------------   89 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--------------------------------------   89 (222)
                      ++.+.+...+..+....  ++..|||+|||+|++++.++..+                                      
T Consensus       178 pl~e~lAa~ll~~~~~~--~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~  255 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPWK--AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE  255 (385)
T ss_dssp             CCCHHHHHHHHHTSCCC--TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred             CCcHHHHHHHHHhhCCC--CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence            34666666666665443  47899999999999999877542                                      


Q ss_pred             --CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853           90 --KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP  148 (222)
Q Consensus        90 --~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~  148 (222)
                        .+|+|+|+|+.+++.|++|+..++++ ++++.++|+.++...     ..||+|++|||+.
T Consensus       256 ~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-----~~~D~Iv~NPPyg  312 (385)
T 3ldu_A          256 SKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-----DEFGFIITNPPYG  312 (385)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-----CBSCEEEECCCCC
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-----CCCcEEEECCCCc
Confidence              36999999999999999999999997 499999999887542     4799999999953

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.52  E-value=4.8e-13  Score=107.71  Aligned_cols=120  Identities=24%  Similarity=0.211  Sum_probs=89.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHc-CCCcEEEEeCchhchhhh
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLN-NISNATFVQGDLNKIGGD  130 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~-~~~~v~~~~~d~~~~~~~  130 (222)
                      ..+...+...  ++.+|||+|||+|.++..+++.   ..+++++|+++.+++.|+++++.+ +.+++++.++|+.+... 
T Consensus        86 ~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~-  162 (258)
T 2pwy_A           86 SAMVTLLDLA--PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL-  162 (258)
T ss_dssp             HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC-
T ss_pred             HHHHHHcCCC--CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC-
Confidence            3445554433  4789999999999999999886   469999999999999999999988 76679999999987622 


Q ss_pred             cCCCCCCCcEEEECCCCCCccHHHHHH-HHhCCCCcEEEEeeCcc-chHhhHHHh
Q 043853          131 FGNAFPKPDIVISDPNRPGMHMKLIKF-LLKLKAPRIVYVSCNPA-TCARDLDYL  183 (222)
Q Consensus       131 ~~~~~~~fD~ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~~~~-~~~~~~~~l  183 (222)
                         +.+.||+|++++|..   ..+++. .+.++++|.+++.+... ........+
T Consensus       163 ---~~~~~D~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l  211 (258)
T 2pwy_A          163 ---EEAAYDGVALDLMEP---WKVLEKAALALKPDRFLVAYLPNITQVLELVRAA  211 (258)
T ss_dssp             ---CTTCEEEEEEESSCG---GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHH
T ss_pred             ---CCCCcCEEEECCcCH---HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence               124799999998743   233443 34478999888777554 333444444

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.52  E-value=8.9e-14  Score=110.40  Aligned_cols=140  Identities=18%  Similarity=0.078  Sum_probs=98.5

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++..++  +++++.+|+.+....   
T Consensus        59 ~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~---  131 (231)
T 1vbf_A           59 GIFMLDELDLH--KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEE---  131 (231)
T ss_dssp             HHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGG---
T ss_pred             HHHHHHhcCCC--CCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccccccc---
Confidence            33444544433  47899999999999999999877899999999999999999998766  799999999873221   


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCC
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTP  211 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~  211 (222)
                       .+.||+|+++.+...+...   ....++|+|.+++.+.+...... ..+..      ....|......+..++|...
T Consensus       132 -~~~fD~v~~~~~~~~~~~~---~~~~L~pgG~l~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~  198 (231)
T 1vbf_A          132 -EKPYDRVVVWATAPTLLCK---PYEQLKEGGIMILPIGVGRVQKL-YKVIK------KGNSPSLENLGEVMFGRIGG  198 (231)
T ss_dssp             -GCCEEEEEESSBBSSCCHH---HHHTEEEEEEEEEEECSSSSEEE-EEEEC------CTTSCEEEEEEEECCCBCCS
T ss_pred             -CCCccEEEECCcHHHHHHH---HHHHcCCCcEEEEEEcCCCccEE-EEEEE------cCCeeEEEEeccEEEEEcCC
Confidence             2479999999865544433   33457899999988865432111 11110      13456666666666666443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.52  E-value=4.4e-14  Score=121.22  Aligned_cols=125  Identities=17%  Similarity=0.159  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--------------------------------------
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--------------------------------------   89 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--------------------------------------   89 (222)
                      ++.+.+...+..++...  ++..+||++||+|++++.+|..+                                      
T Consensus       184 pl~e~lAa~ll~l~~~~--~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~  261 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWH--PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYD  261 (393)
T ss_dssp             SCCHHHHHHHHHHSCCC--TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             CCcHHHHHHHHHHhCCC--CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhccc
Confidence            45666666666666544  37899999999999999777542                                      


Q ss_pred             --CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCC----------ccHHHHH
Q 043853           90 --KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG----------MHMKLIK  156 (222)
Q Consensus        90 --~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~----------~~~~~~~  156 (222)
                        .+++|+|+|+.+++.|++|++.+|+++ +++.++|+.++...     ..||+|++|||+..          +...+.+
T Consensus       262 ~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-----~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~  336 (393)
T 3k0b_A          262 QPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-----DEYGVVVANPPYGERLEDEEAVRQLYREMGI  336 (393)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-----CCSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-----CCCCEEEECCCCccccCCchhHHHHHHHHHH
Confidence              249999999999999999999999975 99999999887542     47999999999532          1222333


Q ss_pred             HHHhCCCCcEEEEeeCccchHhhH
Q 043853          157 FLLKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       157 ~l~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                      .++. .+++.+++-+....+.+.+
T Consensus       337 ~lk~-~~g~~~~iit~~~~l~~~~  359 (393)
T 3k0b_A          337 VYKR-MPTWSVYVLTSYELFEEVY  359 (393)
T ss_dssp             HHHT-CTTCEEEEEECCTTHHHHH
T ss_pred             HHhc-CCCCEEEEEECCHHHHHHh
Confidence            4444 3466666555544444433

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.51  E-value=2.7e-13  Score=109.30  Aligned_cols=103  Identities=11%  Similarity=0.067  Sum_probs=82.1

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCC---CCCCcE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNA---FPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~---~~~fD~  140 (222)
                      ..+|||+|||+|..++.+++.   ..+++++|+|+.+++.|+++++..++. +++++.+|+.+....+...   .+.||+
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  159 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  159 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence            679999999999999999876   469999999999999999999999885 5999999998765433100   247999


Q ss_pred             EEECCCCCCccHHHHHH-HHhCCCCcEEEEee
Q 043853          141 VISDPNRPGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      |+++.+.... ..+++. .+.++|+|+++++.
T Consensus       160 V~~d~~~~~~-~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          160 IFVDADKDNY-LNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             EEECSCSTTH-HHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEcCchHHH-HHHHHHHHHhCCCCeEEEEec
Confidence            9999875554 444444 45589999988653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.51  E-value=8.1e-14  Score=112.66  Aligned_cols=111  Identities=22%  Similarity=0.241  Sum_probs=85.3

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+.++++++.+|+.+++.    
T Consensus        26 ~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~----   99 (260)
T 1vl5_A           26 LAKLMQIAALK--GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF----   99 (260)
T ss_dssp             HHHHHHHHTCC--SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS----
T ss_pred             HHHHHHHhCCC--CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC----
Confidence            34444544433  478999999999999999998888999999999999999999999888889999999988653    


Q ss_pred             CCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          134 AFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       134 ~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +.+.||+|+++..   ..+. ..++..+ +.++|+|.+++..
T Consensus       100 ~~~~fD~V~~~~~l~~~~d~-~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          100 TDERFHIVTCRIAAHHFPNP-ASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             CTTCEEEEEEESCGGGCSCH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEEEhhhhHhcCCH-HHHHHHHHHHcCCCCEEEEEE
Confidence            2258999999753   2222 4555554 4489999988753

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.51  E-value=4e-13  Score=106.94  Aligned_cols=142  Identities=15%  Similarity=0.072  Sum_probs=100.4

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ..+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+. .+++++++|+.++...     ..||+|++...
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~fD~v~~~~~  141 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT-----ELFDLIFDYVF  141 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS-----SCEEEEEEESS
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC-----CCeeEEEEChh
Confidence            45999999999999999988778999999999999999999876543 3599999999886532     47999998654


Q ss_pred             CC----CccHHHHHHHHh-CCCCcEEEEeeCcc----------chHhhHHHhhccCCCCccCCCeEEeEeeeecc-CCCC
Q 043853          147 RP----GMHMKLIKFLLK-LKAPRIVYVSCNPA----------TCARDLDYLCHGVGDQNIKGCYKLKSLQPVDM-FPHT  210 (222)
Q Consensus       147 ~~----~~~~~~~~~l~~-l~~~~~v~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~p~~  210 (222)
                      ..    .....+++.+.+ ++|+|.+++...+.          ....++..+.+       +.||++..+..... .+..
T Consensus       142 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~Gf~~~~~~~~~~~~~~~  214 (235)
T 3lcc_A          142 FCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLV-------PIGFKAVSVEENPHAIPTR  214 (235)
T ss_dssp             TTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHG-------GGTEEEEEEEECTTCCTTT
T ss_pred             hhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHH-------HcCCeEEEEEecCCccccc
Confidence            21    123455555544 89999988755321          11234444443       67899988776542 3333


Q ss_pred             CceeEEEEEEe
Q 043853          211 PHIECVCLLEL  221 (222)
Q Consensus       211 ~~~~~v~~~~~  221 (222)
                      ...+.+.++++
T Consensus       215 ~g~e~~~~~~~  225 (235)
T 3lcc_A          215 KGKEKLGRWKK  225 (235)
T ss_dssp             TTSCEEEEEEE
T ss_pred             cCHHHHhhhhh
Confidence            44566655543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.51  E-value=1.1e-13  Score=109.79  Aligned_cols=103  Identities=18%  Similarity=0.031  Sum_probs=81.8

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCC--CCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAF--PKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~--~~fD~i  141 (222)
                      +.+|||+|||+|..++.+++.   ..+++++|+++.+++.|+++++.+++. +++++++|+.+....+....  +.||+|
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            679999999999999999875   459999999999999999999999884 59999999987654332111  479999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +++++......-+......++++|++++.
T Consensus       150 ~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          150 VVDADKENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            99998655433344444558999988874

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.51  E-value=3.3e-13  Score=110.34  Aligned_cols=109  Identities=20%  Similarity=0.178  Sum_probs=84.3

Q ss_pred             CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++.+|||+|||+|.+++.+++.   ..+++++|+|+.+++.|++|++.+++ +++++..+|+.+...     .+.||+|+
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~V~  186 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD-----EKDVDALF  186 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS-----CCSEEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc-----CCccCEEE
Confidence            4789999999999999998876   45999999999999999999999988 469999999987622     24799999


Q ss_pred             ECCCCCCccHHHHHH-HHhCCCCcEEEEeeCcc-chHhhHHHh
Q 043853          143 SDPNRPGMHMKLIKF-LLKLKAPRIVYVSCNPA-TCARDLDYL  183 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~~~~-~~~~~~~~l  183 (222)
                      +++|..   ..+++. .+.++++|.+++.+... ......+.+
T Consensus       187 ~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l  226 (277)
T 1o54_A          187 LDVPDP---WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKL  226 (277)
T ss_dssp             ECCSCG---GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             ECCcCH---HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence            999844   233333 34478999988777643 333334444

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.51  E-value=6.9e-14  Score=111.02  Aligned_cols=131  Identities=15%  Similarity=0.186  Sum_probs=97.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc-C-------CeEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEeCchhchhhhcCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-V-------KHVYGYEVVPQAISDACRNAKLNN-----ISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~-------~~v~gvD~~~~~i~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~  133 (222)
                      ++.+|||+|||+|.++..+++. .       .+++++|+++.+++.|++++...+     .++++++.+|+.+....   
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---  160 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP---  160 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG---
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc---
Confidence            4789999999999999988874 2       499999999999999999998776     56799999999873221   


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCC
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPH  209 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~  209 (222)
                       ...||+|+++.+...+...   ....++++|.+++.+.+......+..+.+     ..+++|+...+.++.++|.
T Consensus       161 -~~~fD~I~~~~~~~~~~~~---~~~~LkpgG~lvi~~~~~~~~~~l~~~~~-----~~~~~~~~~~l~~~~~~p~  227 (227)
T 1r18_A          161 -NAPYNAIHVGAAAPDTPTE---LINQLASGGRLIVPVGPDGGSQYMQQYDK-----DANGKVEMTRLMGVMYVPL  227 (227)
T ss_dssp             -GCSEEEEEECSCBSSCCHH---HHHTEEEEEEEEEEESCSSSCEEEEEEEE-----CTTSCEEEEEEEEECCCCC
T ss_pred             -CCCccEEEECCchHHHHHH---HHHHhcCCCEEEEEEecCCCceEEEEEEE-----cCCCcEEEEEeccEEEeeC
Confidence             1479999999875554433   33446899999988875333333322221     1145788888888888874

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.50  E-value=1.9e-13  Score=108.20  Aligned_cols=135  Identities=21%  Similarity=0.243  Sum_probs=98.1

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCC-----CcEEEEeCchhchhhhcCCCCCC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNI-----SNATFVQGDLNKIGGDFGNAFPK  137 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~  137 (222)
                      .++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..++.     ++++++.+|+.+....    ...
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~  151 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE----EAP  151 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG----GCC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc----CCC
Confidence            357899999999999999988753   4999999999999999999988663     5699999999764322    247


Q ss_pred             CcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCc
Q 043853          138 PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPH  212 (222)
Q Consensus       138 fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  212 (222)
                      ||+|+++.+...+...   ....++|+|.++++..+......+..+.+     ..++.|+...+..+.+.|....
T Consensus       152 fD~i~~~~~~~~~~~~---~~~~LkpgG~lv~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~f~p~~~~  218 (226)
T 1i1n_A          152 YDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDK-----LQDGSIKMKPLMGVIYVPLTDK  218 (226)
T ss_dssp             EEEEEECSBBSSCCHH---HHHTEEEEEEEEEEESCTTSCEEEEEEEE-----CTTSCEEEEEEEEECCCBCCCH
T ss_pred             cCEEEECCchHHHHHH---HHHhcCCCcEEEEEEecCCCceEEEEEEE-----cCCCcEEEEEcCceEEEeccCC
Confidence            9999999876555433   33446899999888765332222222211     1145788888888888887653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.49  E-value=3.9e-13  Score=105.65  Aligned_cols=101  Identities=19%  Similarity=0.144  Sum_probs=80.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.++..+++..   .+++|+|+|+.+++.|++++...++++++++.+|+.+...    ..+.||+|++
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD~v~~  112 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL----PDNTVDFIFM  112 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS----CSSCEEEEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC----CCCCeeEEEe
Confidence            47899999999999999998765   5999999999999999999999998889999999987653    2257999999


Q ss_pred             CCCCC--CccHHHHHHHH-hCCCCcEEEEee
Q 043853          144 DPNRP--GMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~--~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      +....  .-...+++.+. .++|+|.+++..
T Consensus       113 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A          113 AFTFHELSEPLKFLEELKRVAKPFAYLAIID  143 (219)
T ss_dssp             ESCGGGCSSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ehhhhhcCCHHHHHHHHHHHhCCCeEEEEEE
Confidence            76411  11245555554 478999888764

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.49  E-value=3.6e-13  Score=110.84  Aligned_cols=96  Identities=23%  Similarity=0.272  Sum_probs=75.7

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~  132 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++..++. ++++++++|+.+...   
T Consensus        17 ~~~i~~~~~~~--~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~---   91 (285)
T 1zq9_A           17 INSIIDKAALR--PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL---   91 (285)
T ss_dssp             HHHHHHHTCCC--TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC---
T ss_pred             HHHHHHhcCCC--CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc---
Confidence            34455554433  478999999999999999998888999999999999999999987766 469999999987643   


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHH
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKF  157 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~  157 (222)
                         ..||+|++|+|+....+.+...
T Consensus        92 ---~~fD~vv~nlpy~~~~~~~~~~  113 (285)
T 1zq9_A           92 ---PFFDTCVANLPYQISSPFVFKL  113 (285)
T ss_dssp             ---CCCSEEEEECCGGGHHHHHHHH
T ss_pred             ---hhhcEEEEecCcccchHHHHHH
Confidence               2699999999965443333333

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.49  E-value=1e-12  Score=105.73  Aligned_cols=101  Identities=24%  Similarity=0.260  Sum_probs=81.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++..+ +++|+|+|+.+++.|++++..+++++ ++++++|+.+++.    +.+.||+|+++
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD~v~~~  121 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF----QNEELDLIWSE  121 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS----CTTCEEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC----CCCCEEEEEec
Confidence            467999999999999999998765 99999999999999999999999876 9999999977653    23589999987


Q ss_pred             CCCCC-ccHHHHHHHHh-CCCCcEEEEee
Q 043853          145 PNRPG-MHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~~-~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..... -...+++.+.+ ++|+|.+++++
T Consensus       122 ~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          122 GAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             SCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            64221 13455555544 78999988775

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.49  E-value=7.9e-13  Score=105.34  Aligned_cols=113  Identities=17%  Similarity=0.187  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      ..+++.+.+.....++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+. +++++++|+.+.+..  
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~--   99 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN--   99 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS--
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc--
Confidence            34445555433323578999999999999999998888999999999999999999988776 699999999886532  


Q ss_pred             CCCCCCcEEEECC-CC--C---CccHHHHHHHHh-CCCCcEEEEee
Q 043853          133 NAFPKPDIVISDP-NR--P---GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       133 ~~~~~fD~ii~~p-p~--~---~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                         +.||+|+++. ..  -   .....+++.+.+ ++|+|.+++++
T Consensus       100 ---~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          100 ---RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             ---CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence               4799999976 31  1   122344454444 78999888754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.49  E-value=3.2e-13  Score=105.88  Aligned_cols=98  Identities=16%  Similarity=0.079  Sum_probs=80.2

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +.+|||+|||+|..++.+++.   ..+++++|+|+.+++.|+++++..++++ ++++++|+.+.....   .+ ||+|++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~-fD~v~~  132 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ---RD-IDILFM  132 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC---CS-EEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC---CC-CCEEEE
Confidence            679999999999999999876   4599999999999999999999888864 999999998764432   24 999999


Q ss_pred             CCCCCCccHHHHHHHH-hCCCCcEEEEe
Q 043853          144 DPNRPGMHMKLIKFLL-KLKAPRIVYVS  170 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~-~l~~~~~v~~~  170 (222)
                      +.+.... ..+++.+. .++|+|+++++
T Consensus       133 ~~~~~~~-~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          133 DCDVFNG-ADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             ETTTSCH-HHHHHHHGGGEEEEEEEEEE
T ss_pred             cCChhhh-HHHHHHHHHhcCCCeEEEEE
Confidence            9775544 45555554 47899988874

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.49  E-value=9.3e-13  Score=106.86  Aligned_cols=101  Identities=25%  Similarity=0.285  Sum_probs=81.4

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+|||+|.++..+++... +++|+|+|+.+++.|+++++..++++ ++++++|+.+++.    +.+.||+|++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~i~~  120 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF----RNEELDLIWS  120 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC----CTTCEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC----CCCCEEEEEE
Confidence            3578999999999999999988754 99999999999999999999999865 9999999987653    2258999999


Q ss_pred             CCCC--CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          144 DPNR--PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~--~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ....  .+ ...+++.+.+ ++|+|.+++.+
T Consensus       121 ~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          121 EGAIYNIG-FERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             SSCGGGTC-HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCceecC-HHHHHHHHHHHcCCCCEEEEEE
Confidence            8752  22 2455555544 78999988765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.48  E-value=9.1e-13  Score=108.90  Aligned_cols=108  Identities=13%  Similarity=0.021  Sum_probs=83.6

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFG  132 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~  132 (222)
                      +.+.+.+..  .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++...+++ +++++.+|+.++     
T Consensus        62 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----  134 (302)
T 3hem_A           62 KLALDKLNL--EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----  134 (302)
T ss_dssp             HHHHHTTCC--CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----
T ss_pred             HHHHHHcCC--CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----
Confidence            334444433  34789999999999999999886 679999999999999999999999987 599999999876     


Q ss_pred             CCCCCCcEEEECCC-----CC------CccHHHHHHHH-hCCCCcEEEEee
Q 043853          133 NAFPKPDIVISDPN-----RP------GMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       133 ~~~~~fD~ii~~pp-----~~------~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                        .+.||+|++...     ..      .....+++.+. .++|+|.+++..
T Consensus       135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence              148999998643     11      11245555554 489999988766

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.48  E-value=3.7e-13  Score=107.80  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=83.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHH------cCCCcEEEEeCchhc-hhhhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKL------NNISNATFVQGDLNK-IGGDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~------~~~~~v~~~~~d~~~-~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.+++.+|+..  ..++|+|+|+.+++.|+++++.      .+.+|++++++|+.+ +...+.  .+.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~--~~~  123 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQ  123 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC--TTC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC--CcC
Confidence            46789999999999999999864  4899999999999999998865      456789999999987 332121  247


Q ss_pred             CcEEEECCCCC----------CccHHHHHHHHh-CCCCcEEEEeeCccchHhh
Q 043853          138 PDIVISDPNRP----------GMHMKLIKFLLK-LKAPRIVYVSCNPATCARD  179 (222)
Q Consensus       138 fD~ii~~pp~~----------~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~  179 (222)
                      ||.|+++.|..          .....+++.+.+ |+++|.+++.++.......
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~  176 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDW  176 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHH
Confidence            99998865421          122456666544 8999999988766544443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.48  E-value=3.5e-13  Score=108.41  Aligned_cols=113  Identities=20%  Similarity=0.168  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhh
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGG  129 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~  129 (222)
                      ...+.+...+...  ++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++++..+++ +++++++|+.+.+.
T Consensus        23 ~~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~  100 (256)
T 1nkv_A           23 EKYATLGRVLRMK--PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA  100 (256)
T ss_dssp             HHHHHHHHHTCCC--TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred             HHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence            3345555555433  4789999999999999998875 569999999999999999999998885 69999999988653


Q ss_pred             hcCCCCCCCcEEEECCC--CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          130 DFGNAFPKPDIVISDPN--RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                           .+.||+|++...  ...-...+++.+.+ ++|+|.+++..
T Consensus       101 -----~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          101 -----NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             -----SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             -----CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence                 247999998543  11123556666654 78999888754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.48  E-value=2.4e-12  Score=101.97  Aligned_cols=103  Identities=20%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|.++..+++.   ..+++|+|+|+.+++.++++++.+  ++++++++|+.+...... ..+.||+|+
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~-~~~~~D~v~  148 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRA-LVPKVDVIF  148 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTT-TCCCEEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhc-ccCCceEEE
Confidence            35789999999999999999875   259999999999999999998765  579999999987431111 114799999


Q ss_pred             ECCCCCCccHHHHHH-HHhCCCCcEEEEee
Q 043853          143 SDPNRPGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                      +++|.......++.. .+.++|+|.+++..
T Consensus       149 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          149 EDVAQPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999854433342444 45589999988764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.48  E-value=4.2e-13  Score=107.89  Aligned_cols=114  Identities=16%  Similarity=0.114  Sum_probs=85.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHc--------CCCcEEEEeCchhchhhhcCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLN--------NISNATFVQGDLNKIGGDFGNAFP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~--------~~~~v~~~~~d~~~~~~~~~~~~~  136 (222)
                      ++.+|||+|||+|.+++.+++.++  +++|+|+|+.+++.|+++++.+        ++++++++++|+.+...... +..
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~-~~~  127 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF-EKG  127 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS-CTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc-ccc
Confidence            467999999999999999998753  8999999999999999999887        77789999999987433221 224


Q ss_pred             CCcEEEECCCCC----------CccHHHHHHHH-hCCCCcEEEEeeCccchHhhHH
Q 043853          137 KPDIVISDPNRP----------GMHMKLIKFLL-KLKAPRIVYVSCNPATCARDLD  181 (222)
Q Consensus       137 ~fD~ii~~pp~~----------~~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~  181 (222)
                      .+|.|+++.|..          .....++..+. .++++|.+++.++...+...+.
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~  183 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMV  183 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHH
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHH
Confidence            788887654321          12245666554 4899999998877655544443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.48  E-value=3.1e-13  Score=108.28  Aligned_cols=103  Identities=15%  Similarity=0.059  Sum_probs=82.1

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC---CCCCcE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA---FPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~---~~~fD~  140 (222)
                      ..+|||+|||+|..++.+++.   ..+++++|+|+.+++.|+++++..++++ ++++.+|+.+....+...   .+.||+
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  150 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF  150 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence            679999999999999999875   4699999999999999999999999864 999999998875433100   247999


Q ss_pred             EEECCCCCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          141 VISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      |+++.+.... ..+++.+ ..++|+|+++++.
T Consensus       151 I~~d~~~~~~-~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          151 GFVDADKPNY-IKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEECSCGGGH-HHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCchHHH-HHHHHHHHHhcCCCeEEEEec
Confidence            9999875443 4444544 4589999888753

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.47  E-value=3.6e-14  Score=114.11  Aligned_cols=103  Identities=13%  Similarity=0.017  Sum_probs=81.9

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCC--CCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGN--AFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~--~~~~fD~i  141 (222)
                      +.+|||+|||+|..++.+++.   ..+|+++|+++.+++.|+++++..+++ +++++.+|+.+....+..  ..+.||+|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            679999999999999999874   459999999999999999999999986 599999999887654310  02479999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +++.+.......+....+.++|+|++++.
T Consensus       141 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          141 FIDADKTNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEESCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCChHHhHHHHHHHHHhcCCCeEEEEE
Confidence            99987544433333344558999998874

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.47  E-value=2.5e-13  Score=108.36  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=81.3

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCC--CCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAF--PKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~--~~fD~i  141 (222)
                      +.+|||+|||+|..++.+++.   ..+++++|+++.+++.|+++++..++++ ++++.+|+.+....+....  +.||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            679999999999999999875   3499999999999999999999988864 9999999977654432222  479999


Q ss_pred             EECCCCCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          142 ISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +++.+.... ..+++.+ ..++|+|++++..
T Consensus       153 ~~d~~~~~~-~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          153 FIDADKRNY-PRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             EECSCGGGH-HHHHHHHHHTEEEEEEEEEEC
T ss_pred             EECCCHHHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            999874433 3444444 5578999988753

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.47  E-value=1.9e-12  Score=118.35  Aligned_cols=160  Identities=13%  Similarity=0.151  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHc------CCCcEE
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLN------NISNAT  118 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~------~~~~v~  118 (222)
                      +......+++.+.+...  ++.+|||+|||+|.++..+++.+   .+|+|+|+|+.|++.|++++...      +.++++
T Consensus       704 PL~eqRle~LLelL~~~--~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVe  781 (950)
T 3htx_A          704 PLSKQRVEYALKHIRES--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT  781 (950)
T ss_dssp             CHHHHHHHHHHHHHHHS--CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEE
T ss_pred             hHHHHHHHHHHHHhccc--CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceE
Confidence            34444556666655433  37899999999999999999876   59999999999999999977642      566799


Q ss_pred             EEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----HHHHHHH-HhCCCCcEEEEeeCccchHhhHH------------
Q 043853          119 FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----MKLIKFL-LKLKAPRIVYVSCNPATCARDLD------------  181 (222)
Q Consensus       119 ~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~------------  181 (222)
                      ++++|+.+++..    .+.||+|++.....-+.    ..+++.+ +.++|+ .+++++........+.            
T Consensus       782 fiqGDa~dLp~~----d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd  856 (950)
T 3htx_A          782 LYDGSILEFDSR----LHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNS  856 (950)
T ss_dssp             EEESCTTSCCTT----SCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC----------
T ss_pred             EEECchHhCCcc----cCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhccccccccccc
Confidence            999999887542    35799999975422222    1244443 447888 7776663322211111            


Q ss_pred             --------------------------HhhccCCCCccCCCeEEeEeeeecc-CCCCCceeEEEEEEe
Q 043853          182 --------------------------YLCHGVGDQNIKGCYKLKSLQPVDM-FPHTPHIECVCLLEL  221 (222)
Q Consensus       182 --------------------------~l~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~v~~~~~  221 (222)
                                                .++.       ..+|.+.....-+. +|...+.+.+.+|.|
T Consensus       857 ~~~~~~fRh~DHrFEWTReEFr~Wae~LAe-------r~GYsVefvGVGDg~ep~vG~~TQiAVFtR  916 (950)
T 3htx_A          857 EPQLPKFRNHDHKFEWTREQFNQWASKLGK-------RHNYSVEFSGVGGSGEVEPGFASQIAIFRR  916 (950)
T ss_dssp             --CCSSCSCSSCSCCBCHHHHHHHHHHHHH-------HTTEEEEEEEESSCSSSTTCCSEEEEEEEE
T ss_pred             ccccccccccCcceeecHHHHHHHHHHHHH-------hcCcEEEEEccCCCCCCCCCCccEEEEEEE
Confidence                                      1221       44788877776666 678889999999987

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.47  E-value=5.3e-13  Score=103.10  Aligned_cols=99  Identities=22%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+.+++++..+|+.+.+.     .+.||+|+++...
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v~~~~~l  107 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-----DRQYDFILSTVVL  107 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-----CCCEEEEEEESCG
T ss_pred             CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-----CCCceEEEEcchh
Confidence            67999999999999999998878999999999999999999998888789999999988643     2579999998642


Q ss_pred             C----CccHHHHHHHHh-CCCCcEEEEee
Q 043853          148 P----GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       148 ~----~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .    .....+++.+.+ ++|+|.+++.+
T Consensus       108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          108 MFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             GGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            1    123455555544 78999866543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.47  E-value=2.4e-13  Score=108.25  Aligned_cols=101  Identities=12%  Similarity=0.234  Sum_probs=81.7

Q ss_pred             CCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +.+|||+|||+|..+..+++.  ..+++++|+++.+++.|+++++..+++ +++++.+|+.+...... ..+.||+|+++
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~  133 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE-LYPLFDVLFID  133 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT-TSCCEEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc-cCCCccEEEEC
Confidence            679999999999999999886  469999999999999999999999886 49999999988644321 12479999999


Q ss_pred             CCCCCccHHHHHHH-HhCCCCcEEEEe
Q 043853          145 PNRPGMHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       145 pp~~~~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                      ++.... ..+++.+ ..++++|.++++
T Consensus       134 ~~~~~~-~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          134 AAKGQY-RRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             GGGSCH-HHHHHHHGGGEEEEEEEEEE
T ss_pred             CCHHHH-HHHHHHHHHHcCCCeEEEEE
Confidence            875543 4555554 447899998876

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.47  E-value=1.4e-12  Score=108.40  Aligned_cols=100  Identities=13%  Similarity=-0.009  Sum_probs=81.2

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++++.++++ +++++.+|+.+.+.    +.+.||+|++.
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~V~~~  192 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF----DKGAVTASWNN  192 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC----CTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC----CCCCEeEEEEC
Confidence            4789999999999999999886 789999999999999999999999986 59999999987642    22589999986


Q ss_pred             CC--CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          145 PN--RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       145 pp--~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ..  ..+ ...+++.+. .++|+|.+++.+
T Consensus       193 ~~l~~~~-~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          193 ESTMYVD-LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             SCGGGSC-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CchhhCC-HHHHHHHHHHHcCCCcEEEEEE
Confidence            53  223 355555554 489999887665

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.47  E-value=2.3e-13  Score=110.48  Aligned_cols=123  Identities=10%  Similarity=-0.061  Sum_probs=82.3

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+.+.+.+...  ++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|++++..+.+ ...+...+.. .....  
T Consensus        34 ~~~il~~l~l~--~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v-~~~~~~~~~~-~~~~~--  107 (261)
T 3iv6_A           34 RENDIFLENIV--PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCV-TIDLLDITAE-IPKEL--  107 (261)
T ss_dssp             HHHHHHTTTCC--TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCC-EEEECCTTSC-CCGGG--
T ss_pred             HHHHHHhcCCC--CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccc-eeeeeecccc-ccccc--
Confidence            34444544433  478999999999999999999888999999999999999999865411 1333222220 01111  


Q ss_pred             CCCCCcEEEECCCCCC----ccHHHHHHH-HhCCCCcEEEEeeCccchHhhHHHhh
Q 043853          134 AFPKPDIVISDPNRPG----MHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLC  184 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~----~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l~  184 (222)
                       .+.||+|+++..-..    -...++..+ +.+ |+|.+++++......++...+.
T Consensus       108 -~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~  161 (261)
T 3iv6_A          108 -AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIE  161 (261)
T ss_dssp             -TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHH
T ss_pred             -CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHH
Confidence             147999999864211    112334433 347 9999999998877777765443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.47  E-value=7e-13  Score=104.57  Aligned_cols=99  Identities=26%  Similarity=0.254  Sum_probs=78.4

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-  146 (222)
                      +.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++.+.++ .+++++++|+.+...    +.+.||+|+++++ 
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~----~~~~~D~v~~~~~~  113 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF----EDKTFDYVIFIDSI  113 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS----CTTCEEEEEEESCG
T ss_pred             CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC----CCCcEEEEEEcCch
Confidence            6799999999999999999888899999999999999999998877 579999999987542    1247999999877 


Q ss_pred             -CCCc--cHHHHHHHH-hCCCCcEEEEee
Q 043853          147 -RPGM--HMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       147 -~~~~--~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                       ....  ...+++.+. .++|+|.+++..
T Consensus       114 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          114 VHFEPLELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             GGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence             3321  133444443 378988887654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.46  E-value=2.1e-13  Score=107.02  Aligned_cols=114  Identities=17%  Similarity=0.175  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG  128 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~  128 (222)
                      ..+.+.+.+...+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+  +++++++|+.+..
T Consensus        35 ~~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~  110 (216)
T 3ofk_A           35 ERERHTQLLRLSLSSG--AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFS  110 (216)
T ss_dssp             HHHHHHHHHHHHTTTS--SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCC
T ss_pred             HHHHHHHHHHHHcccC--CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCC
Confidence            3345455555554333  36799999999999999999888899999999999999999987543  6999999998876


Q ss_pred             hhcCCCCCCCcEEEECCCCCCc-----cHHHHHHH-HhCCCCcEEEEee
Q 043853          129 GDFGNAFPKPDIVISDPNRPGM-----HMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~pp~~~~-----~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .     .+.||+|+++.....+     ...+++.+ +.++|+|.+++++
T Consensus       111 ~-----~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          111 T-----AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             C-----SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             C-----CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            2     2589999997541111     12334444 3478999998865

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.46  E-value=7e-13  Score=105.98  Aligned_cols=100  Identities=19%  Similarity=0.205  Sum_probs=81.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++...+++++++.++|+.+++.    +.+.||+|++...
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~v~~~~~   96 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF----PDDSFDIITCRYA   96 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS----CTTCEEEEEEESC
T ss_pred             CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC----CCCcEEEEEECCc
Confidence            478999999999999999998888999999999999999999999888889999999987643    2257999998753


Q ss_pred             ---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          147 ---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       147 ---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                         ... ...++..+ +.++|+|.+++..
T Consensus        97 l~~~~~-~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           97 AHHFSD-VRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             GGGCSC-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhccC-HHHHHHHHHHHcCCCcEEEEEE
Confidence               222 24555554 4479999888754

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.46  E-value=2.9e-12  Score=102.23  Aligned_cols=142  Identities=15%  Similarity=0.096  Sum_probs=94.0

Q ss_pred             CCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           64 RDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        64 ~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ...++.+|||+|||+|+++..+++.   ..+|+|+|+++.+++.+.+.++..  +|+.++++|+....... ...+.||+
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~-~~~~~~D~  149 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYK-SVVENVDV  149 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTT-TTCCCEEE
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhh-ccccceEE
Confidence            3446899999999999999998875   349999999999986665555443  47999999997643211 11247999


Q ss_pred             EEECCCCCCccHHHHHHHH-hCCCCcEEEEeeCc---------cch-HhhHHHhhccCCCCccCCCeEEeEeeeeccCCC
Q 043853          141 VISDPNRPGMHMKLIKFLL-KLKAPRIVYVSCNP---------ATC-ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPH  209 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~  209 (222)
                      |++|.+.......+...+. .|+|+|.+++++.+         ... ......+.        +.+|++...  .++.|.
T Consensus       150 I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~--------~~gf~~~~~--~~l~p~  219 (232)
T 3id6_C          150 LYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLE--------NSNFETIQI--INLDPY  219 (232)
T ss_dssp             EEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHH--------HTTEEEEEE--EECTTT
T ss_pred             EEecCCChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHH--------HCCCEEEEE--eccCCC
Confidence            9999875433233344444 58999998876422         122 22334443        567887774  456675


Q ss_pred             CC-ceeEEEE
Q 043853          210 TP-HIECVCL  218 (222)
Q Consensus       210 ~~-~~~~v~~  218 (222)
                      .. |.-.+..
T Consensus       220 ~~~h~~v~~~  229 (232)
T 3id6_C          220 DKDHAIVLSK  229 (232)
T ss_dssp             CSSCEEEEEE
T ss_pred             cCceEEEEEE
Confidence            44 5555543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.46  E-value=5.7e-13  Score=113.82  Aligned_cols=114  Identities=18%  Similarity=0.139  Sum_probs=81.9

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-C-CeEEEEeCCHHHHHHHHHHH-------HHcCC--CcEEEEeC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-V-KHVYGYEVVPQAISDACRNA-------KLNNI--SNATFVQG  122 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~-~~v~gvD~~~~~i~~a~~n~-------~~~~~--~~v~~~~~  122 (222)
                      +..+.+.+...  ++.+|||+|||+|.+++.+|.. + .+++|||+++.+++.|++++       +.+|+  .+++++++
T Consensus       162 i~~il~~l~l~--~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          162 VAQMIDEIKMT--DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHCCC--TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            34444555444  4889999999999999988864 3 36999999999999999875       34565  46999999


Q ss_pred             chhchhhhcCCCCCCCcEEEECCCCC--CccHHHHHHHHhCCCCcEEEEee
Q 043853          123 DLNKIGGDFGNAFPKPDIVISDPNRP--GMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       123 d~~~~~~~~~~~~~~fD~ii~~pp~~--~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      |+.+.+....  ...||+|+++++.-  .....+.+.++.|+|||.++++.
T Consensus       240 D~~~lp~~d~--~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          240 DFLSEEWRER--IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             CTTSHHHHHH--HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             cccCCccccc--cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEee
Confidence            9988764210  12699999998732  23333444445589999888553

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.46  E-value=6.3e-13  Score=115.88  Aligned_cols=144  Identities=19%  Similarity=0.186  Sum_probs=99.7

Q ss_pred             CCCeEEEEecccchhHHHHhhc---------------CCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhh
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---------------VKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGG  129 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---------------~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~  129 (222)
                      ++.+|+|+|||+|++++.+++.               ..+++|+|+++.+++.|+.|+..+++.  ++++.++|......
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            4679999999999999987753               258999999999999999999999885  68899999876543


Q ss_pred             hcCCCCCCCcEEEECCCCCCcc-------------------HHHHHH-HHhCCCCcEEEEeeCcc-----chHhhHHH-h
Q 043853          130 DFGNAFPKPDIVISDPNRPGMH-------------------MKLIKF-LLKLKAPRIVYVSCNPA-----TCARDLDY-L  183 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~-------------------~~~~~~-l~~l~~~~~v~~~~~~~-----~~~~~~~~-l  183 (222)
                      .     ..||+|++|||.....                   ..++.. +..++++|.+.+.....     .....++. +
T Consensus       251 ~-----~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L  325 (445)
T 2okc_A          251 S-----TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL  325 (445)
T ss_dssp             S-----SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred             c-----CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHH
Confidence            2     3799999999943211                   134443 44578887764443211     12233432 3


Q ss_pred             hccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          184 CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                      .+       ...+.....-|-.+|+.+..-.+|.+|.+.
T Consensus       326 ~~-------~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~  357 (445)
T 2okc_A          326 LQ-------DFNLHTILRLPTGIFYAQGVKANVLFFSKG  357 (445)
T ss_dssp             HH-------HEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred             Hh-------cCcEEEEEeCCCCCccCCCCCEEEEEEECC
Confidence            22       223444444466788887888888888763

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=6.1e-13  Score=103.40  Aligned_cols=123  Identities=15%  Similarity=0.103  Sum_probs=90.7

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++     .++++++++|+.+++..    .+.||+|++....
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~----~~~fD~v~~~~~l  112 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDS----PKRWAGLLAWYSL  112 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGS----CCCEEEEEEESSS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccC----CCCeEEEEehhhH
Confidence            67999999999999999998888999999999999999987     34689999999886532    2589999996531


Q ss_pred             ----CCccHHHHHHHHh-CCCCcEEEEeeCcc---------------chHhhHHHhhccCCCCccCCCeEEeEeeeecc
Q 043853          148 ----PGMHMKLIKFLLK-LKAPRIVYVSCNPA---------------TCARDLDYLCHGVGDQNIKGCYKLKSLQPVDM  206 (222)
Q Consensus       148 ----~~~~~~~~~~l~~-l~~~~~v~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (222)
                          ......+++.+.+ ++|+|.++++....               ....++..+++       +.||++........
T Consensus       113 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          113 IHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALE-------TAGFQVTSSHWDPR  184 (203)
T ss_dssp             TTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHH-------HTTEEEEEEEECTT
T ss_pred             hcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHH-------HCCCcEEEEEecCC
Confidence                1123455555544 78999988776221               11334444433       67999998876554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.46  E-value=3.2e-13  Score=108.01  Aligned_cols=103  Identities=15%  Similarity=0.080  Sum_probs=80.8

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC---------
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA---------  134 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~---------  134 (222)
                      +.+|||+|||+|..+..+++.   ..+++++|+++.+++.|+++++..+.++ ++++.+|+.+....+...         
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            679999999999999999876   4699999999999999999999998876 999999997754322100         


Q ss_pred             ---C-CCCcEEEECCCCCCccHHHHHH-HHhCCCCcEEEEee
Q 043853          135 ---F-PKPDIVISDPNRPGMHMKLIKF-LLKLKAPRIVYVSC  171 (222)
Q Consensus       135 ---~-~~fD~ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~  171 (222)
                         . +.||+|+++...... ..+++. ...++++|++++..
T Consensus       141 f~~~~~~fD~I~~~~~~~~~-~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADKENY-PNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCCSTTCEEEEEECSCGGGH-HHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCCCcCEEEEeCCHHHH-HHHHHHHHHHcCCCeEEEEEc
Confidence               1 479999999764433 344444 45589999988764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.46  E-value=2.7e-13  Score=115.38  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=77.4

Q ss_pred             CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +++|||+|||+|.+++.+|+.+ .+|+|+|.|+ +++.|+++++.|++++ ++++++|+.++...     ++||+|++.+
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-----e~~DvivsE~  157 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-----EQVDAIVSEW  157 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-----SCEEEEECCC
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-----ccccEEEeec
Confidence            7899999999999999888865 5899999996 8899999999999976 99999999887432     4899999976


Q ss_pred             C-----CCCccHHHHHHHHh-CCCCcEEE
Q 043853          146 N-----RPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       146 p-----~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      -     ..++...++....+ |+|+|+++
T Consensus       158 ~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          158 MGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             CBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccccchhhhHHHHHHhhCCCCceEC
Confidence            3     34455666665543 78887765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.46  E-value=5.3e-13  Score=109.35  Aligned_cols=99  Identities=19%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++..+++ +++++++|+.+...     .+.||+|+++.+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-----~~~fD~i~~~~~  193 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI-----QENYDFIVSTVV  193 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC-----CSCEEEEEECSS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc-----cCCccEEEEccc
Confidence            378999999999999999998888999999999999999999999988 79999999988654     258999999875


Q ss_pred             CC----CccHHHHHHHHh-CCCCcEEEEee
Q 043853          147 RP----GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       147 ~~----~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..    .....+++.+.+ ++++|.+++.+
T Consensus       194 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          194 FMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             GGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            21    222355555544 78999876654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.45  E-value=1.3e-12  Score=106.35  Aligned_cols=100  Identities=22%  Similarity=0.237  Sum_probs=81.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++...++++++++.+|+.+.+..    .+.||+|+++
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~~fD~v~~~  112 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFE----DSSFDHIFVC  112 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSC----TTCEEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCC----CCCeeEEEEe
Confidence            4789999999999999999887  459999999999999999999999988899999999876532    2589999987


Q ss_pred             CC---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          145 PN---RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       145 pp---~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..   ... ...+++.+.+ ++|+|.+++..
T Consensus       113 ~~l~~~~~-~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          113 FVLEHLQS-PEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             SCGGGCSC-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhcCC-HHHHHHHHHHHcCCCcEEEEEE
Confidence            54   122 2455555544 79999887653

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.45  E-value=5.9e-13  Score=113.66  Aligned_cols=113  Identities=23%  Similarity=0.272  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchh
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIG  128 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~  128 (222)
                      ..+.+.+......  .++.+|||+|||+|.+++.+++.+. +|+|+|+| .+++.|+++++.+++++ ++++++|+.++.
T Consensus        49 ~~~~~~i~~~~~~--~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  125 (376)
T 3r0q_C           49 DAYFNAVFQNKHH--FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS  125 (376)
T ss_dssp             HHHHHHHHTTTTT--TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred             HHHHHHHHhcccc--CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC
Confidence            3334444443322  3478999999999999999988765 99999999 99999999999999876 999999998875


Q ss_pred             hhcCCCCCCCcEEEECCC-----CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          129 GDFGNAFPKPDIVISDPN-----RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~pp-----~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      ..     ++||+|++++.     .......++..+ +.|+|+|+++++.
T Consensus       126 ~~-----~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          126 LP-----EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             CS-----SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             cC-----CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            42     47999999873     223345566666 5589999887543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.45  E-value=3.3e-12  Score=108.92  Aligned_cols=103  Identities=17%  Similarity=0.083  Sum_probs=80.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhc-hhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK-IGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+| |+|.+++.+++.+  .+++|+|+|+.+++.|++|++.+|+++++++++|+.+ ++...   .+.||+|++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~---~~~fD~Vi~  247 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYA---LHKFDTFIT  247 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTT---SSCBSEEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhc---cCCccEEEE
Confidence            468999999 9999999998765  4999999999999999999999998789999999988 33211   247999999


Q ss_pred             CCCCCCc-cHHHHHHH-HhCCCCc-EEEEeeCc
Q 043853          144 DPNRPGM-HMKLIKFL-LKLKAPR-IVYVSCNP  173 (222)
Q Consensus       144 ~pp~~~~-~~~~~~~l-~~l~~~~-~v~~~~~~  173 (222)
                      |||.... ...+++.+ +.++|+| ++++++..
T Consensus       248 ~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          248 DPPETLEAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             CCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            9995311 13334433 4478988 55666655

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.45  E-value=1.6e-12  Score=104.27  Aligned_cols=133  Identities=14%  Similarity=0.107  Sum_probs=94.7

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.|++++...  .+++++++|+.+++.    +.+.||+|++..
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~----~~~~fD~v~~~~  166 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL----PPNTYDLIVIQW  166 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC----CSSCEEEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC----CCCCeEEEEEcc
Confidence            4789999999999999988865 558999999999999999987654  469999999987643    224799999976


Q ss_pred             CCCCc----cHHHHHHHH-hCCCCcEEEEeeCcc---------------chHhhHHHhhccCCCCccCCCeEEeEeeeec
Q 043853          146 NRPGM----HMKLIKFLL-KLKAPRIVYVSCNPA---------------TCARDLDYLCHGVGDQNIKGCYKLKSLQPVD  205 (222)
Q Consensus       146 p~~~~----~~~~~~~l~-~l~~~~~v~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  205 (222)
                      ....+    ...+++.+. .++|+|.+++.....               .....+..+++       +.||++.......
T Consensus       167 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~aGf~~~~~~~~~  239 (254)
T 1xtp_A          167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFN-------ESGVRVVKEAFQE  239 (254)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHH-------HHTCCEEEEEECT
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHH-------HCCCEEEEeeecC
Confidence            42211    234444443 478999988776310               01123343332       5689999888777


Q ss_pred             cCCCCCc
Q 043853          206 MFPHTPH  212 (222)
Q Consensus       206 ~~p~~~~  212 (222)
                      .+|....
T Consensus       240 ~~~~~~~  246 (254)
T 1xtp_A          240 EWPTDLF  246 (254)
T ss_dssp             TCCTTSC
T ss_pred             CCCchhh
Confidence            7776543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.44  E-value=2.5e-13  Score=116.56  Aligned_cols=80  Identities=21%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc--CCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN--NISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +.+|||+|||+|..++.+++.+.+|+|+|+|+.+++.|++|++.+  |+++++++++|+.++.....  ...||+|++||
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~--~~~fDvV~lDP  171 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIK--TFHPDYIYVDP  171 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHH--HHCCSEEEECC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhcc--CCCceEEEECC
Confidence            689999999999999999998889999999999999999999998  88779999999988643221  13799999999


Q ss_pred             CCCC
Q 043853          146 NRPG  149 (222)
Q Consensus       146 p~~~  149 (222)
                      |+.+
T Consensus       172 Prr~  175 (410)
T 3ll7_A          172 ARRS  175 (410)
T ss_dssp             EEC-
T ss_pred             CCcC
Confidence            9543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.44  E-value=9.5e-13  Score=107.44  Aligned_cols=111  Identities=22%  Similarity=0.158  Sum_probs=85.0

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHc-C--CCcEEEEeCchhch
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLN-N--ISNATFVQGDLNKI  127 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~-~--~~~v~~~~~d~~~~  127 (222)
                      ...+...+...  ++.+|||+|||+|.++..+++.   ..+++++|+++.+++.|++|++.+ +  .++++++++|+.+.
T Consensus        88 ~~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           88 AAQIVHEGDIF--PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  165 (280)
T ss_dssp             HHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHcCCC--CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence            34455554433  4789999999999999999875   469999999999999999999887 6  56799999999876


Q ss_pred             hhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                      ..    +.+.||+|++++|..   ..+++.+ +.++++|.+++.+..
T Consensus       166 ~~----~~~~~D~v~~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          166 EL----PDGSVDRAVLDMLAP---WEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             CC----CTTCEEEEEEESSCG---GGGHHHHHHHEEEEEEEEEEESS
T ss_pred             CC----CCCceeEEEECCcCH---HHHHHHHHHhCCCCCEEEEEeCC
Confidence            32    124799999998733   2344444 447899998877754

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.44  E-value=9.5e-14  Score=112.73  Aligned_cols=82  Identities=26%  Similarity=0.284  Sum_probs=68.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCH-------HHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP-------QAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKP  138 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~-------~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~f  138 (222)
                      ++.+|||+|||+|.+++.+|..+.+|+|+|+|+       .+++.|++|++.+++.+ ++++++|+.++...+....+.|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            367999999999999999998888999999999       99999999999888866 9999999988754322100379


Q ss_pred             cEEEECCCCC
Q 043853          139 DIVISDPNRP  148 (222)
Q Consensus       139 D~ii~~pp~~  148 (222)
                      |+|++||++.
T Consensus       163 D~V~~dP~~~  172 (258)
T 2r6z_A          163 DIVYLDPMYP  172 (258)
T ss_dssp             SEEEECCCC-
T ss_pred             cEEEECCCCC
Confidence            9999999743

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.44  E-value=1.5e-12  Score=103.68  Aligned_cols=96  Identities=17%  Similarity=0.147  Sum_probs=76.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++...    +++++++|+.+...     .+.||+|++.-.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~-----~~~fD~v~~~~~  112 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL-----PRRYDNIVLTHV  112 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC-----SSCEEEEEEESC
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc-----CCcccEEEEhhH
Confidence            367899999999999999998888999999999999999988642    69999999988632     257999998653


Q ss_pred             --CCCccHHHHHHHH-h-CCCCcEEEEee
Q 043853          147 --RPGMHMKLIKFLL-K-LKAPRIVYVSC  171 (222)
Q Consensus       147 --~~~~~~~~~~~l~-~-l~~~~~v~~~~  171 (222)
                        .-.-...+++.+. + ++|+|.+++++
T Consensus       113 l~~~~~~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          113 LEHIDDPVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhcCHHHHHHHHHHHhcCCCCEEEEEc
Confidence              1111256666666 4 78999988776

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.44  E-value=1.8e-12  Score=106.93  Aligned_cols=99  Identities=17%  Similarity=0.146  Sum_probs=77.8

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI---SNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+.   .+++++++|+.+++.     .+.||+|++.
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD~v~~~  157 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-----DKRFGTVVIS  157 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-----SCCEEEEEEC
T ss_pred             CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-----CCCcCEEEEC
Confidence            45999999999999999998888999999999999999999988764   469999999988654     2589998865


Q ss_pred             CC---CCC--ccHHHHHHHH-hCCCCcEEEEee
Q 043853          145 PN---RPG--MHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       145 pp---~~~--~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ..   ...  ....+++.+. .++|+|.+++++
T Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          158 SGSINELDEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            21   111  1244455444 478999988766

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.44  E-value=2.2e-12  Score=104.75  Aligned_cols=117  Identities=18%  Similarity=0.169  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhc
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNK  126 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~  126 (222)
                      ....+.+.+.+.+...  ++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++...+++ +++++.+|+.+
T Consensus        45 ~~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  122 (273)
T 3bus_A           45 ATDRLTDEMIALLDVR--SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD  122 (273)
T ss_dssp             HHHHHHHHHHHHSCCC--TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc
Confidence            3444455555555433  4789999999999999988874 669999999999999999999998876 49999999987


Q ss_pred             hhhhcCCCCCCCcEEEECCCCC--CccHHHHHHHHh-CCCCcEEEEee
Q 043853          127 IGGDFGNAFPKPDIVISDPNRP--GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       127 ~~~~~~~~~~~fD~ii~~pp~~--~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .+.    +.+.||+|++.....  .-...+++.+.+ ++|+|.+++..
T Consensus       123 ~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          123 LPF----EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             CCS----CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCC----CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            643    225799999875421  123555666554 78999887665

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.44  E-value=2.8e-12  Score=101.41  Aligned_cols=101  Identities=23%  Similarity=0.281  Sum_probs=79.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-----NATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...++.     ++++..+|+.+.+.    ..+.||+|
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~v  105 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF----HDSSFDFA  105 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS----CTTCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC----CCCceeEE
Confidence            4789999999999999999988889999999999999999999877762     48999999987653    23589999


Q ss_pred             EECCCCCCc--cH---HHHHHHH-hCCCCcEEEEee
Q 043853          142 ISDPNRPGM--HM---KLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~~~--~~---~~~~~l~-~l~~~~~v~~~~  171 (222)
                      +++.....+  ..   .+++.+. .++|+|.+++..
T Consensus       106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            997642111  12   4555554 478999988764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.44  E-value=1.4e-12  Score=110.04  Aligned_cols=130  Identities=19%  Similarity=0.253  Sum_probs=95.2

Q ss_pred             CeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHH
Q 043853           32 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNA  109 (222)
Q Consensus        32 ~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~  109 (222)
                      +..+...++.|.+.......   +.+.+.+...  .+.+|||+|||+|.++..+++.+  .+++++|+|+.+++.|++++
T Consensus       166 ~~~~~~~~gvf~~~~~d~~~---~~ll~~l~~~--~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~  240 (343)
T 2pjd_A          166 GLTVKTLPGVFSRDGLDVGS---QLLLSTLTPH--TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL  240 (343)
T ss_dssp             TEEEEECTTCTTSSSCCHHH---HHHHHHSCTT--CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH
T ss_pred             ceEEEecCCccCCCCCcHHH---HHHHHhcCcC--CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            56777778888876543322   2333443222  35689999999999999998875  38999999999999999999


Q ss_pred             HHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC-c------cHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          110 KLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG-M------HMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       110 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~-~------~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                      ..+++. ++++.+|+.+..      .+.||+|+++||... .      ...+++.+.+ ++|+|.+++..+.
T Consensus       241 ~~~~~~-~~~~~~d~~~~~------~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          241 AANGVE-GEVFASNVFSEV------KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             HHTTCC-CEEEECSTTTTC------CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             HHhCCC-CEEEEccccccc------cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            998875 678899987643      147999999998542 1      1344444433 7899998877643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.43  E-value=1.5e-12  Score=102.44  Aligned_cols=103  Identities=22%  Similarity=0.112  Sum_probs=74.9

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+|||+|..+..+++..  .+|+|+|+|+.+++.+.++++..  .++.++.+|+.+........ +.||+|++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~-~~fD~V~~  132 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIV-EKVDLIYQ  132 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence            357899999999999999888764  59999999999988777776643  46899999987642111111 47999999


Q ss_pred             CCCCCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          144 DPNRPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +.+.......+++.+ +.|+|+|.++++.
T Consensus       133 ~~~~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          133 DIAQKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            965433222324444 4589999988774

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.43  E-value=8.8e-13  Score=115.80  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=69.6

Q ss_pred             CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|+.++.+|+.   ...|+|+|+|+.+++.+++|++.+|+++++++++|+.++.....   +.||.|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~---~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVP---EMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHST---TCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhcc---ccCCEEEE
Confidence            5789999999999999999875   25899999999999999999999999889999999988754221   47999999


Q ss_pred             CCCCCC
Q 043853          144 DPNRPG  149 (222)
Q Consensus       144 ~pp~~~  149 (222)
                      |||+.+
T Consensus       194 D~PcSg  199 (479)
T 2frx_A          194 DAPCSG  199 (479)
T ss_dssp             ECCCCC
T ss_pred             CCCcCC
Confidence            999653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.43  E-value=5.2e-13  Score=110.24  Aligned_cols=99  Identities=19%  Similarity=0.162  Sum_probs=76.2

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      +.+.+.+.+...  ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++.  +.++++++++|+.++.... 
T Consensus        38 i~~~Iv~~l~~~--~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~~-  112 (295)
T 3gru_A           38 FVNKAVESANLT--KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLNK-  112 (295)
T ss_dssp             HHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGGG-
T ss_pred             HHHHHHHhcCCC--CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCccc-
Confidence            344455555433  37899999999999999999888899999999999999999987  3457999999998865431 


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHHHH
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~l~  159 (222)
                         ..||.|++|+|+....+-+...+.
T Consensus       113 ---~~fD~Iv~NlPy~is~pil~~lL~  136 (295)
T 3gru_A          113 ---LDFNKVVANLPYQISSPITFKLIK  136 (295)
T ss_dssp             ---SCCSEEEEECCGGGHHHHHHHHHH
T ss_pred             ---CCccEEEEeCcccccHHHHHHHHh
Confidence               369999999996544333333443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.43  E-value=1e-12  Score=102.74  Aligned_cols=114  Identities=18%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchh
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIG  128 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~  128 (222)
                      ..+.+.+.+.+...   ..+|||+|||+|.++..+++. ..+++|+|+|+.+++.|+++++..++. +++++++|+.+.+
T Consensus        30 ~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  106 (219)
T 3dlc_A           30 PIIAENIINRFGIT---AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP  106 (219)
T ss_dssp             HHHHHHHHHHHCCC---EEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS
T ss_pred             HHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC
Confidence            34445555555433   239999999999999999886 459999999999999999999998875 5999999998865


Q ss_pred             hhcCCCCCCCcEEEECCC--CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          129 GDFGNAFPKPDIVISDPN--RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      .    +.+.||+|+++..  .......+++.+. .++|+|.+++..
T Consensus       107 ~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          107 I----EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             S----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C----CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            3    2257999999864  1122345555554 489999988864

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.42  E-value=1.8e-12  Score=109.19  Aligned_cols=109  Identities=22%  Similarity=0.295  Sum_probs=82.1

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhh
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGD  130 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~  130 (222)
                      +.+.+...+...  ++.+|||+|||+|.+++.+++.+. +++|+|+|+ +++.|+++++.++. ++++++++|+.++.. 
T Consensus        52 ~~~~i~~~~~~~--~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-  127 (340)
T 2fyt_A           52 YRDFIYQNPHIF--KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL-  127 (340)
T ss_dssp             HHHHHHHCGGGT--TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC-
T ss_pred             HHHHHHhhhhhc--CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC-
Confidence            334555544333  378999999999999999988654 999999997 99999999999998 469999999987643 


Q ss_pred             cCCCCCCCcEEEECC-C----CCCccHHHHHHH-HhCCCCcEEE
Q 043853          131 FGNAFPKPDIVISDP-N----RPGMHMKLIKFL-LKLKAPRIVY  168 (222)
Q Consensus       131 ~~~~~~~fD~ii~~p-p----~~~~~~~~~~~l-~~l~~~~~v~  168 (222)
                         +.++||+|++++ +    .......++..+ +.++|+|.++
T Consensus       128 ---~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          128 ---PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ---SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ---CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence               124799999987 2    122334455555 3478998876

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.42  E-value=4.1e-12  Score=97.43  Aligned_cols=129  Identities=22%  Similarity=0.226  Sum_probs=89.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.++++.     ++++++++|+.+...    +.+.||+|+++++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~----~~~~~D~i~~~~~  116 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQI----SETDFDLIVSAGN  116 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCC----CCCCEEEEEECCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCC----CCCceeEEEECCc
Confidence            4789999999999999999988889999999999999999875     358899999987542    1247999999854


Q ss_pred             CCC-----ccHHHHHHHH-hCCCCcEEEEeeCccc--hHhhHHHhhccCCCCccCCCeEEeEeeee-ccCCCCC
Q 043853          147 RPG-----MHMKLIKFLL-KLKAPRIVYVSCNPAT--CARDLDYLCHGVGDQNIKGCYKLKSLQPV-DMFPHTP  211 (222)
Q Consensus       147 ~~~-----~~~~~~~~l~-~l~~~~~v~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~p~~~  211 (222)
                      .-.     ....+++.+. .++++|.+++......  ...++..+.+       +.||++...... +..|...
T Consensus       117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~-------~~Gf~~~~~~~~~~~~~~~~  183 (195)
T 3cgg_A          117 VMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAE-------RVGLELENAFESWDLKPFVQ  183 (195)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHH-------HHTEEEEEEESSTTCCBCCT
T ss_pred             HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHH-------HcCCEEeeeecccccCcCCC
Confidence            211     1134444443 3789999887664321  2233333332       568888776433 3444433

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.41  E-value=5.2e-12  Score=99.24  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=75.2

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++      .++++..+|+.++..........||+|+++...
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l  126 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANFAL  126 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECchh
Confidence            58999999999999999998888999999999999999987      347888999888733222233469999987542


Q ss_pred             -CCccHHHHHHHH-hCCCCcEEEEee
Q 043853          148 -PGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       148 -~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                       ......+++.+. .++|+|.++++.
T Consensus       127 ~~~~~~~~l~~~~~~L~pgG~l~~~~  152 (227)
T 3e8s_A          127 LHQDIIELLSAMRTLLVPGGALVIQT  152 (227)
T ss_dssp             CSSCCHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhhHHHHHHHHHHHhCCCeEEEEEe
Confidence             122345556554 478999988766

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.41  E-value=3.8e-12  Score=105.85  Aligned_cols=99  Identities=13%  Similarity=0.039  Sum_probs=79.0

Q ss_pred             CCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++...++++ +++..+|+.+++       +.||+|++
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~fD~v~~  161 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-------EPVDRIVS  161 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-------CCCSEEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-------CCcCEEEE
Confidence            34789999999999999998876 7799999999999999999999888754 999999997753       37999998


Q ss_pred             CCCCC----CccHHHHHHH-HhCCCCcEEEEee
Q 043853          144 DPNRP----GMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~----~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .....    .....+++.+ +.++|+|.+++..
T Consensus       162 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          162 IEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             ESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            74311    1224555555 4489999988765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.41  E-value=1.1e-12  Score=110.88  Aligned_cols=98  Identities=22%  Similarity=0.281  Sum_probs=79.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++++.+++++ ++++++|+.++...    .++||+|+++
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~fD~Iis~  140 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELP----VEKVDIIISE  140 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SSCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCC----CCceEEEEEc
Confidence            378999999999999999988754 999999995 9999999999999876 99999999887432    2589999998


Q ss_pred             CC-----CCCccHHHHHHH-HhCCCCcEEEE
Q 043853          145 PN-----RPGMHMKLIKFL-LKLKAPRIVYV  169 (222)
Q Consensus       145 pp-----~~~~~~~~~~~l-~~l~~~~~v~~  169 (222)
                      +.     .......++..+ +.++|+|+++.
T Consensus       141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          141 WMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            73     334456666666 44899998763

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.41  E-value=6.4e-12  Score=102.84  Aligned_cols=97  Identities=11%  Similarity=0.122  Sum_probs=77.8

Q ss_pred             CCCeEEEEecccchhHHHHh-hcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la-~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..++ +.+.+++|+|+|+.+++.|++++...+.. ++++..+|+.+++       +.||+|++.
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~fD~v~~~  136 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-------EPVDRIVSI  136 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-------CCCSEEEEE
T ss_pred             CcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-------CCeeEEEEe
Confidence            47899999999999999888 45669999999999999999999988775 5999999997653       379999987


Q ss_pred             CC-----CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          145 PN-----RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp-----~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      ..     ... ...+++.+ +.++|+|.+++..
T Consensus       137 ~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          137 GAFEHFGHER-YDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             SCGGGTCTTT-HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CchhhcChHH-HHHHHHHHHHhcCCCCEEEEEE
Confidence            42     122 34555555 4489999988765

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.41  E-value=2.8e-12  Score=111.31  Aligned_cols=81  Identities=22%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+|||+|+.+..+++..  .+++|+|+|+.+++.+++|++.+++. ++++++|+.+....+.  .+.||.|++
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~~~~--~~~fD~Vl~  321 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCG--EQQFDRILL  321 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHT--TCCEEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchhhcc--cCCCCEEEE
Confidence            347899999999999999998765  59999999999999999999999884 8999999988753222  247999999


Q ss_pred             CCCCCC
Q 043853          144 DPNRPG  149 (222)
Q Consensus       144 ~pp~~~  149 (222)
                      |||+.+
T Consensus       322 D~Pcsg  327 (429)
T 1sqg_A          322 DAPCSA  327 (429)
T ss_dssp             ECCCCC
T ss_pred             eCCCCc
Confidence            999654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.41  E-value=1.4e-12  Score=112.51  Aligned_cols=153  Identities=14%  Similarity=0.093  Sum_probs=97.9

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN  116 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~  116 (222)
                      +.|+. +....+.    +.+.+..  .++.+|||+|||+|.+++.+++.   ..+++|+|+++.+++.|         .+
T Consensus        19 g~~~T-P~~l~~~----~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~   82 (421)
T 2ih2_A           19 GRVET-PPEVVDF----MVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PW   82 (421)
T ss_dssp             --CCC-CHHHHHH----HHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TT
T ss_pred             ceEeC-CHHHHHH----HHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CC
Confidence            44554 3444444    4444432  23569999999999999988874   45999999999999887         36


Q ss_pred             EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----------H---------------------HHHHH-HHhCCCC
Q 043853          117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----------M---------------------KLIKF-LLKLKAP  164 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----------~---------------------~~~~~-l~~l~~~  164 (222)
                      ++++++|+.+...     .+.||+|++|||+....          .                     .+++. +..++++
T Consensus        83 ~~~~~~D~~~~~~-----~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~  157 (421)
T 2ih2_A           83 AEGILADFLLWEP-----GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG  157 (421)
T ss_dssp             EEEEESCGGGCCC-----SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEE
T ss_pred             CcEEeCChhhcCc-----cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCC
Confidence            8999999987642     24799999999953211          1                     22332 3347888


Q ss_pred             cEEEEeeCcc----chHhhHHHhhccCCCCccCCCe-EEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          165 RIVYVSCNPA----TCARDLDYLCHGVGDQNIKGCY-KLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       165 ~~v~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                      |.+.+.....    .....+..+..       +.++ .+..+.  ..|+.+..-.++..++++
T Consensus       158 G~~~~i~p~~~l~~~~~~~lr~~l~-------~~~~~~i~~l~--~~F~~~~~~~~il~~~k~  211 (421)
T 2ih2_A          158 GVLVFVVPATWLVLEDFALLREFLA-------REGKTSVYYLG--EVFPQKKVSAVVIRFQKS  211 (421)
T ss_dssp             EEEEEEEEGGGGTCGGGHHHHHHHH-------HHSEEEEEEEE--SCSTTCCCCEEEEEEESS
T ss_pred             CEEEEEEChHHhcCccHHHHHHHHH-------hcCCeEEEECC--CCCCCCCccEEEEEEEeC
Confidence            8776554322    12233433321       3444 344333  778888877888887763

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.41  E-value=3.7e-12  Score=104.76  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHh----cCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCc
Q 043853           50 AEVLYKLIEDCA----GLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGD  123 (222)
Q Consensus        50 ~~~~~~~i~~~~----~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d  123 (222)
                      .....+.+.+.+    ...  ++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++++..+++ +++++++|
T Consensus        63 ~~~~~~~l~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  140 (297)
T 2o57_A           63 SLRTDEWLASELAMTGVLQ--RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS  140 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhhccCCC--CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence            333445555554    333  4789999999999999998876 669999999999999999999988885 59999999


Q ss_pred             hhchhhhcCCCCCCCcEEEECCC---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          124 LNKIGGDFGNAFPKPDIVISDPN---RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       124 ~~~~~~~~~~~~~~fD~ii~~pp---~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      +.+.+.    +.+.||+|++...   ... ...+++.+.+ ++|+|.+++..
T Consensus       141 ~~~~~~----~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          141 FLEIPC----EDNSYDFIWSQDAFLHSPD-KLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             TTSCSS----CTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCC----CCCCEeEEEecchhhhcCC-HHHHHHHHHHHcCCCeEEEEEE
Confidence            988653    2257999998753   122 3455555544 79999888765

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.41  E-value=3.6e-12  Score=102.38  Aligned_cols=98  Identities=20%  Similarity=0.207  Sum_probs=77.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++..   ..+++++++|+.+++.    +.+.||+|++..
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~----~~~~fD~v~~~~  116 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI----EPDAYNVVLSSL  116 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC----CTTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC----CCCCeEEEEEch
Confidence            478999999999999999988776 99999999999999998865   3469999999987653    235899999976


Q ss_pred             CC--CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          146 NR--PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       146 p~--~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..  ..-...+++.+.+ ++|+|.++++.
T Consensus       117 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          117 ALHYIASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence            41  1123455555544 89999998863

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.40  E-value=4e-12  Score=113.27  Aligned_cols=165  Identities=19%  Similarity=0.239  Sum_probs=107.7

Q ss_pred             CCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--------------------CCeEEEEeCC
Q 043853           39 ANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--------------------VKHVYGYEVV   98 (222)
Q Consensus        39 ~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--------------------~~~v~gvD~~   98 (222)
                      .+.||.+ ......++    +.+.  +.++.+|+|++||+|++++.+++.                    ...++|+|++
T Consensus       148 ~G~fyTP-~~iv~~mv----~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid  220 (541)
T 2ar0_A          148 AGQYFTP-RPLIKTII----HLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV  220 (541)
T ss_dssp             --CCCCC-HHHHHHHH----HHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC
T ss_pred             CCeeeCC-HHHHHHHH----HHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCC
Confidence            3566643 45544444    3333  234679999999999999877643                    1379999999


Q ss_pred             HHHHHHHHHHHHHcCCCc-----EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----------------HHHHHH
Q 043853           99 PQAISDACRNAKLNNISN-----ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----------------MKLIKF  157 (222)
Q Consensus        99 ~~~i~~a~~n~~~~~~~~-----v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----------------~~~~~~  157 (222)
                      +.+++.|+.|+..+++.+     +.+.++|.......   ....||+|++|||+....                ..++..
T Consensus       221 ~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~---~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~  297 (541)
T 2ar0_A          221 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE---NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH  297 (541)
T ss_dssp             HHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH---TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccc---cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHH
Confidence            999999999999988875     88999998765432   124799999999954321                134444


Q ss_pred             -HHhCCCCcEEEEeeCccc-----hHhhHH-HhhccCCCCccCCC-eEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          158 -LLKLKAPRIVYVSCNPAT-----CARDLD-YLCHGVGDQNIKGC-YKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       158 -l~~l~~~~~v~~~~~~~~-----~~~~~~-~l~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                       +..++++|.+.+-+....     ....++ .+.        +.+ ..-...-|..+|+.+....+|.+|.+
T Consensus       298 ~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~--------~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k  361 (541)
T 2ar0_A          298 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLM--------DKCHLHTILRLPTGIFYAQGVKTNVLFFTK  361 (541)
T ss_dssp             HHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHH--------HHEEEEEEEECCSSCSSSCSCCEEEEEEEE
T ss_pred             HHHHhCCCCEEEEEecCcceecCcHHHHHHHHHh--------hcCCEEEEEEcCcCcccCCCCcEEEEEEEC
Confidence             445788777654443221     123333 332        222 22222335678988888899999986

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.40  E-value=6.3e-13  Score=106.36  Aligned_cols=101  Identities=10%  Similarity=-0.033  Sum_probs=77.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||||||+|..+..+++.. .++++||+||.+++.|+++....+. +++++.+|+.+....+.  .+.||.|+.|+
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~--~~~FD~i~~D~  136 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLP--DGHFDGILYDT  136 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSC--TTCEEEEEECC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhccccc--ccCCceEEEee
Confidence            47899999999999999998764 4899999999999999999887665 58999999988765443  25799999987


Q ss_pred             CCCC-------ccHHHHHHH-HhCCCCcEEEEe
Q 043853          146 NRPG-------MHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       146 p~~~-------~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                      ....       ....+++.+ +.|+|||++.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            4211       123444444 448999987643

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.40  E-value=7.7e-12  Score=103.98  Aligned_cols=82  Identities=11%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||+|||+|+.++.+++.   ..+|+|+|+++.+++.+++|++.+|+++++++++|+.++..... ....||.|+
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~-~~~~fD~Vl  179 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP-RYHEVHYIL  179 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG-GGTTEEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcccc-ccCCCCEEE
Confidence            34789999999999999998874   35999999999999999999999999889999999988653211 013699999


Q ss_pred             ECCCCC
Q 043853          143 SDPNRP  148 (222)
Q Consensus       143 ~~pp~~  148 (222)
                      +|||+.
T Consensus       180 ~D~PcS  185 (309)
T 2b9e_A          180 LDPSCS  185 (309)
T ss_dssp             ECCCCC
T ss_pred             EcCCcC
Confidence            999954

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.40  E-value=6.7e-12  Score=105.43  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=80.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN--NI--SNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +..+|||+|||+|.++..+++.  ..+++++|+|+.+++.|++++...  ++  ++++++.+|+.++.....  .+.||+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~--~~~fDl  197 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA--EGSYDA  197 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC--TTCEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhcc--CCCccE
Confidence            4679999999999999999876  359999999999999999998753  33  469999999988754321  247999


Q ss_pred             EEECCCCCC-----c-cHHHHHHHHh-CCCCcEEEEee
Q 043853          141 VISDPNRPG-----M-HMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~-----~-~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      |++|++...     + ...+.+.+.+ |+++|++++.+
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            999986211     1 3566666544 89999998864

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.40  E-value=1.5e-12  Score=103.39  Aligned_cols=110  Identities=21%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  131 (222)
                      ++.+...+.. ..++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++...+  +++++++|+.+.+.. 
T Consensus        32 ~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~-  107 (234)
T 3dtn_A           32 YGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE-  107 (234)
T ss_dssp             HHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC-
T ss_pred             HHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC-
Confidence            3445555432 235789999999999999999887  5599999999999999999986554  799999999887543 


Q ss_pred             CCCCCCCcEEEECCCCCCccH----HHHHHHH-hCCCCcEEEEee
Q 043853          132 GNAFPKPDIVISDPNRPGMHM----KLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp~~~~~~----~~~~~l~-~l~~~~~v~~~~  171 (222)
                          +.||+|+++.....+..    .+++.+. .++|+|.+++..
T Consensus       108 ----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          108 ----EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             ----SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                48999999875222221    2455554 489999988765

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.40  E-value=1.4e-12  Score=105.67  Aligned_cols=90  Identities=11%  Similarity=0.005  Sum_probs=70.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++..  .++++++++|+.++......
T Consensus        18 ~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~   93 (255)
T 3tqs_A           18 LQKIVSAIHPQ--KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVK   93 (255)
T ss_dssp             HHHHHHHHCCC--TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSC
T ss_pred             HHHHHHhcCCC--CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhc
Confidence            34455555433  378999999999999999998888999999999999999999864  45799999999887543211


Q ss_pred             CCCCCcEEEECCCCC
Q 043853          134 AFPKPDIVISDPNRP  148 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~  148 (222)
                      ...+|| |++|+|+.
T Consensus        94 ~~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           94 TDKPLR-VVGNLPYN  107 (255)
T ss_dssp             CSSCEE-EEEECCHH
T ss_pred             cCCCeE-EEecCCcc
Confidence            123577 99999964

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.39  E-value=3.9e-12  Score=102.05  Aligned_cols=99  Identities=29%  Similarity=0.266  Sum_probs=77.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+. +++++++|+.+....     +.||+|++...
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~-----~~fD~v~~~~~  114 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK-----NEFDAVTMFFS  114 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC-----SCEEEEEECSS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC-----CCccEEEEcCC
Confidence            467999999999999999998888999999999999999999988776 599999999886432     47999997532


Q ss_pred             ---CC--CccHHHHHHH-HhCCCCcEEEEee
Q 043853          147 ---RP--GMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       147 ---~~--~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                         ..  .....+++.+ +.++|+|.++++.
T Consensus       115 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence               11  1123344444 3478999988764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.39  E-value=4.7e-12  Score=98.29  Aligned_cols=98  Identities=17%  Similarity=0.091  Sum_probs=77.9

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      + +|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++....+. ++++.++|+.+...    +.+.||+|++....
T Consensus        31 ~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----~~~~fD~v~~~~~~  104 (202)
T 2kw5_A           31 G-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI----VADAWEGIVSIFCH  104 (202)
T ss_dssp             S-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC----CTTTCSEEEEECCC
T ss_pred             C-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC----CcCCccEEEEEhhc
Confidence            5 999999999999999998778999999999999999999988777 69999999987642    22579999986542


Q ss_pred             CC--ccHHHHHHHHh-CCCCcEEEEee
Q 043853          148 PG--MHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       148 ~~--~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..  ....+++.+.+ ++|+|.+++.+
T Consensus       105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          105 LPSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             CCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            21  12344444444 78999988775

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.39  E-value=2.7e-12  Score=101.79  Aligned_cols=117  Identities=10%  Similarity=0.039  Sum_probs=82.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCC-CCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA-FPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++     .++++++++|+.+....   . .+.||+|++++
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~---~~~~~fD~v~~~~  119 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPA---GLGAPFGLIVSRR  119 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCT---TCCCCEEEEEEES
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCC---cCCCCEEEEEeCC
Confidence            478999999999999999998888999999999999999998     34689999999543221   1 25899999985


Q ss_pred             CCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853          146 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       146 p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  202 (222)
                      .......   +..+.++|+|.++......+...-...+.        +.||+.....
T Consensus       120 ~~~~~l~---~~~~~LkpgG~l~~~~~~~~~~~~~~~l~--------~~Gf~~~~~~  165 (226)
T 3m33_A          120 GPTSVIL---RLPELAAPDAHFLYVGPRLNVPEVPERLA--------AVGWDIVAED  165 (226)
T ss_dssp             CCSGGGG---GHHHHEEEEEEEEEEESSSCCTHHHHHHH--------HTTCEEEEEE
T ss_pred             CHHHHHH---HHHHHcCCCcEEEEeCCcCCHHHHHHHHH--------HCCCeEEEEE
Confidence            4333222   33344689998884433333333333332        4566655544

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.39  E-value=8.5e-13  Score=107.04  Aligned_cols=105  Identities=18%  Similarity=0.224  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  131 (222)
                      .+++++.+..    +...+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++      .++++++++|+.+++.  
T Consensus        28 ~l~~~l~~~~----~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~--   95 (257)
T 4hg2_A           28 ALFRWLGEVA----PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGL--   95 (257)
T ss_dssp             HHHHHHHHHS----SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCC--
T ss_pred             HHHHHHHHhc----CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcc--
Confidence            4556666654    235689999999999999999988999999999999998864      2479999999988754  


Q ss_pred             CCCCCCCcEEEECCC--CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          132 GNAFPKPDIVISDPN--RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp--~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                        +.+.||+|++.-.  +... ..++..+. .|+|+|++.+.+
T Consensus        96 --~~~sfD~v~~~~~~h~~~~-~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           96 --PPASVDVAIAAQAMHWFDL-DRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             --CSSCEEEEEECSCCTTCCH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred             --cCCcccEEEEeeehhHhhH-HHHHHHHHHHcCCCCEEEEEE
Confidence              2358999999753  2232 44555554 489999876554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.38  E-value=3e-12  Score=117.28  Aligned_cols=127  Identities=22%  Similarity=0.242  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--------------------------------------
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--------------------------------------   89 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--------------------------------------   89 (222)
                      ++.+.+...+..++...  ++..++|++||+|++++.+|..+                                      
T Consensus       173 pl~e~LAa~ll~~~~~~--~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~  250 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQ--PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARK  250 (703)
T ss_dssp             SSCHHHHHHHHHHTTCC--TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCC--CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhh
Confidence            46666777777766433  37789999999999999776531                                      


Q ss_pred             ------CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCC---c-------cH
Q 043853           90 ------KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG---M-------HM  152 (222)
Q Consensus        90 ------~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~---~-------~~  152 (222)
                            .+++|+|+|+.+++.|+.|+..+|+++ +++.++|+.++.....  .+.||+|++|||+..   .       ..
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~--~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~  328 (703)
T 3v97_A          251 GLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLP--KGPYGTVLSNPPYGERLDSEPALIALHS  328 (703)
T ss_dssp             HHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCT--TCCCCEEEECCCCCC---CCHHHHHHHH
T ss_pred             ccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccc--cCCCCEEEeCCCccccccchhHHHHHHH
Confidence                  379999999999999999999999987 9999999988643211  127999999999532   1       22


Q ss_pred             HHHHHHHhCCCCcEEEEeeCccchHh
Q 043853          153 KLIKFLLKLKAPRIVYVSCNPATCAR  178 (222)
Q Consensus       153 ~~~~~l~~l~~~~~v~~~~~~~~~~~  178 (222)
                      .+.+.++.+.+++.+++-+....+.+
T Consensus       329 ~l~~~lk~~~~g~~~~ilt~~~~l~~  354 (703)
T 3v97_A          329 LLGRIMKNQFGGWNLSLFSASPDLLS  354 (703)
T ss_dssp             HHHHHHHHHCTTCEEEEEESCHHHHH
T ss_pred             HHHHHHHhhCCCCeEEEEeCCHHHHH
Confidence            23334444567777776665534433

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.38  E-value=3.7e-12  Score=106.76  Aligned_cols=110  Identities=29%  Similarity=0.376  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhh
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGG  129 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~  129 (222)
                      .+.+.+.......  ++.+|||+|||+|.+++.+++.+ .+++|+|+| .+++.|+++++.+++++ ++++++|+.++..
T Consensus        25 ~y~~ai~~~~~~~--~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  101 (328)
T 1g6q_1           25 SYRNAIIQNKDLF--KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL  101 (328)
T ss_dssp             HHHHHHHHHHHHH--TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred             HHHHHHHhhHhhc--CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC
Confidence            3344444333323  36799999999999999888865 499999999 59999999999999864 9999999988643


Q ss_pred             hcCCCCCCCcEEEECCCC-----CCccHHHHHHH-HhCCCCcEEE
Q 043853          130 DFGNAFPKPDIVISDPNR-----PGMHMKLIKFL-LKLKAPRIVY  168 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~-----~~~~~~~~~~l-~~l~~~~~v~  168 (222)
                      .    .++||+|+++++.     ......++..+ +.++|+|.++
T Consensus       102 ~----~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          102 P----FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             S----SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             C----CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            1    2479999998752     22234555555 4478998876

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.38  E-value=3.2e-11  Score=107.25  Aligned_cols=173  Identities=16%  Similarity=0.156  Sum_probs=112.2

Q ss_pred             CCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-----CCeEEEEeCCHHHHHHHHHHHHHcC
Q 043853           39 ANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-----VKHVYGYEVVPQAISDACRNAKLNN  113 (222)
Q Consensus        39 ~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-----~~~v~gvD~~~~~i~~a~~n~~~~~  113 (222)
                      .+.||. +......+++++....  .+.++.+|+|++||+|++.+.+++.     ...++|+|+++.++..|+.|+..+|
T Consensus       196 ~G~fyT-P~~Vv~lmv~ll~~~~--~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  272 (542)
T 3lkd_A          196 AGEFYT-PQPVAKLMTQIAFLGR--EDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG  272 (542)
T ss_dssp             CSSCCC-CHHHHHHHHHHHHTTC--TTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCeecc-cHHHHHHHHHHHhccc--CCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC
Confidence            355664 4666666655543211  1234779999999999999977764     3489999999999999999999999


Q ss_pred             C--CcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc-------------------------HHHHH-HHHhCC-CC
Q 043853          114 I--SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH-------------------------MKLIK-FLLKLK-AP  164 (222)
Q Consensus       114 ~--~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~-------------------------~~~~~-~l~~l~-~~  164 (222)
                      +  +++.+.++|........ ....+||+|++|||+....                         -.++. .+..++ ++
T Consensus       273 i~~~~~~I~~gDtL~~d~p~-~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g  351 (542)
T 3lkd_A          273 VPIENQFLHNADTLDEDWPT-QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN  351 (542)
T ss_dssp             CCGGGEEEEESCTTTSCSCC-SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred             CCcCccceEecceecccccc-cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence            8  46899999987652110 1225799999999942100                         11333 344578 88


Q ss_pred             cEEEEeeCccch-----HhhHH-HhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          165 RIVYVSCNPATC-----ARDLD-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       165 ~~v~~~~~~~~~-----~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                      |.+.+-+....+     ...++ .+.+       .....-.-.-|-.+|..+..-.+|.+|.|+
T Consensus       352 Gr~a~VlP~g~Lf~~~~~~~iRk~Lle-------~~~l~~II~LP~~lF~~t~i~t~Ilvl~K~  408 (542)
T 3lkd_A          352 GVMAIVLPHGVLFRGNAEGTIRKALLE-------EGAIDTVIGLPANIFFNTSIPTTVIILKKN  408 (542)
T ss_dssp             CEEEEEEETHHHHCCTHHHHHHHHHHH-------TTCEEEEEECCSSCSSSCCCCEEEEEECSS
T ss_pred             eeEEEEecchHhhCCchhHHHHHHHHh-------CCceeEEEEccccccCCCCCcEEEEEEecC
Confidence            876444322211     23333 3321       223333333366889988889999998763

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.38  E-value=6.2e-12  Score=98.30  Aligned_cols=95  Identities=17%  Similarity=0.191  Sum_probs=74.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++      ++++..+|+.+++.     .+.||+|+++..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~-----~~~fD~v~~~~~  111 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLDA-----IDAYDAVWAHAC  111 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC-----CSCEEEEEECSC
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCCC-----CCcEEEEEecCc
Confidence            4779999999999999999988889999999999999999987      46788899887652     258999999864


Q ss_pred             CCC----ccHHHHHHHH-hCCCCcEEEEeeC
Q 043853          147 RPG----MHMKLIKFLL-KLKAPRIVYVSCN  172 (222)
Q Consensus       147 ~~~----~~~~~~~~l~-~l~~~~~v~~~~~  172 (222)
                      ...    ....+++.+. .++|+|.++++..
T Consensus       112 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          112 LLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            211    1234444443 4789999987763

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.38  E-value=2.7e-12  Score=108.44  Aligned_cols=111  Identities=21%  Similarity=0.254  Sum_probs=81.3

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhh
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGD  130 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~  130 (222)
                      +.+.+...+...  ++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.|+++++.++++ +++++.+|+.++...
T Consensus        38 y~~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  114 (348)
T 2y1w_A           38 YQRAILQNHTDF--KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP  114 (348)
T ss_dssp             HHHHHHHTGGGT--TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             HHHHHHhccccC--CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC
Confidence            344454444333  37899999999999999888764 4999999996 889999999999984 699999999886422


Q ss_pred             cCCCCCCCcEEEECCCCC----CccHHHHHHH-HhCCCCcEEEEee
Q 043853          131 FGNAFPKPDIVISDPNRP----GMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       131 ~~~~~~~fD~ii~~pp~~----~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                           ++||+|+++++..    ......+..+ +.|+|+|.++++.
T Consensus       115 -----~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          115 -----EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             -----SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             -----CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence                 4799999997621    1112333333 3478999887543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.37  E-value=4.6e-12  Score=102.02  Aligned_cols=100  Identities=17%  Similarity=0.017  Sum_probs=77.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++ ..+.+++++..+|+.+++.    +.+.||+|++...
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~----~~~~fD~v~~~~~  113 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL----PDESVHGVIVVHL  113 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS----CTTCEEEEEEESC
T ss_pred             CCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC----CCCCeeEEEECCc
Confidence            4789999999999999999988889999999999999999998 4444579999999987642    2257999999754


Q ss_pred             C--CCccHHHHHHH-HhCCCCcEEEEee
Q 043853          147 R--PGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       147 ~--~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .  ..-...+++.+ +.++|+|.+++..
T Consensus       114 l~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          114 WHLVPDWPKVLAEAIRVLKPGGALLEGW  141 (263)
T ss_dssp             GGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHCCCCcEEEEEe
Confidence            1  11124555555 4478999887764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.37  E-value=5.3e-12  Score=103.56  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=84.5

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC----CcEEEEeCchhchh
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI----SNATFVQGDLNKIG  128 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~----~~v~~~~~d~~~~~  128 (222)
                      +.+++...+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+.    .++.+..+|+.+++
T Consensus        45 ~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           45 YKAWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHHHHHT--TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHhccc--CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            334455544333  367999999999999999998888999999999999999998855433    35889999998876


Q ss_pred             hhcCCCCCCCcEEEEC-CC---CCC------ccHHHHHHHH-hCCCCcEEEEeeC
Q 043853          129 GDFGNAFPKPDIVISD-PN---RPG------MHMKLIKFLL-KLKAPRIVYVSCN  172 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~-pp---~~~------~~~~~~~~l~-~l~~~~~v~~~~~  172 (222)
                      ..+ -..+.||+|++. ..   ...      ....+++.+. .++|+|.++++..
T Consensus       123 ~~~-~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          123 KDV-PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             HHS-CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccc-ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            332 123589999996 22   111      1344555554 4799999887764

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.37  E-value=1.5e-12  Score=103.90  Aligned_cols=101  Identities=10%  Similarity=-0.046  Sum_probs=75.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++... +++|+|+|+.+++.|+++.+..+ .+++++++|+.+....+.  .+.||+|+++.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~--~~~fD~V~~d~  136 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLP--DGHFDGILYDT  136 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSC--TTCEEEEEECC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccC--CCceEEEEECC
Confidence            478999999999999999987544 89999999999999999988766 469999999988733222  25799999932


Q ss_pred             -C----CCC--ccHHHHHHH-HhCCCCcEEEEe
Q 043853          146 -N----RPG--MHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       146 -p----~~~--~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                       +    ...  ....+++.+ +.|+|+|.+++.
T Consensus       137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence             1    111  111334434 448999988754

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.37  E-value=9.3e-12  Score=99.10  Aligned_cols=108  Identities=16%  Similarity=0.221  Sum_probs=80.8

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      +.+++...+    .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.++++.   ...+++++++|+.+.+.   
T Consensus        43 ~~~~l~~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~---  112 (242)
T 3l8d_A           43 IIPFFEQYV----KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF---  112 (242)
T ss_dssp             HHHHHHHHS----CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS---
T ss_pred             HHHHHHHHc----CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC---
Confidence            344454443    24779999999999999999988889999999999999999875   23469999999988653   


Q ss_pred             CCCCCCcEEEECCCC--CCccHHHHHHHH-hCCCCcEEEEee
Q 043853          133 NAFPKPDIVISDPNR--PGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~--~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                       +.+.||+|++....  ..-...+++.+. .++|+|.++++.
T Consensus       113 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          113 -ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             -CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence             23589999987541  122235555554 478999988765

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.37  E-value=2.9e-12  Score=100.71  Aligned_cols=96  Identities=18%  Similarity=0.090  Sum_probs=75.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++.    .+++++++|+.+++..     +.||+|+++..
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~-----~~fD~v~~~~~  115 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP-----TSIDTIVSTYA  115 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC-----SCCSEEEEESC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC-----CCeEEEEECcc
Confidence            47899999999999999999888899999999999999998865    4689999999886542     48999999864


Q ss_pred             CCCcc--H--HHHHHHH-hCCCCcEEEEee
Q 043853          147 RPGMH--M--KLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       147 ~~~~~--~--~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ...+.  .  .+++.+. .++|+|.+++..
T Consensus       116 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          116 FHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             GGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            22111  1  1455544 489999988774

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.37  E-value=6.3e-12  Score=100.33  Aligned_cols=128  Identities=14%  Similarity=0.106  Sum_probs=89.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++        ++++.+|+.+....+.  .+.||+|++.-.
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~--~~~fD~i~~~~~  110 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLP--DKYLDGVMISHF  110 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSC--TTCBSEEEEESC
T ss_pred             CCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcC--CCCeeEEEECCc
Confidence            468999999999999999988888999999999999999876        6899999988643322  258999998653


Q ss_pred             C--CC--ccHHHHHHHH-hCCCCcEEEEeeC-ccchH-----------------hhHHHhhccCCCCccCCCeEEeEeee
Q 043853          147 R--PG--MHMKLIKFLL-KLKAPRIVYVSCN-PATCA-----------------RDLDYLCHGVGDQNIKGCYKLKSLQP  203 (222)
Q Consensus       147 ~--~~--~~~~~~~~l~-~l~~~~~v~~~~~-~~~~~-----------------~~~~~l~~~~~~~~~~~~~~~~~~~~  203 (222)
                      .  -.  ....+++.+. .++|+|.++++.. +....                 .++..+.+       +.||++.....
T Consensus       111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------~aGf~~~~~~~  183 (240)
T 3dli_A          111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILE-------YLGFRDVKIEF  183 (240)
T ss_dssp             GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHH-------HHTCEEEEEEE
T ss_pred             hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHH-------HCCCeEEEEEE
Confidence            1  11  1245555554 4899998887662 22211                 22333332       56888888777


Q ss_pred             eccCCCCC
Q 043853          204 VDMFPHTP  211 (222)
Q Consensus       204 ~~~~p~~~  211 (222)
                      ...++...
T Consensus       184 ~~~~~~~~  191 (240)
T 3dli_A          184 FEECEELT  191 (240)
T ss_dssp             ECCCCTTT
T ss_pred             eccCcccc
Confidence            66555433

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.36  E-value=3.9e-12  Score=110.03  Aligned_cols=113  Identities=17%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             HHHHhcCCCCCCCeEEEEecccchhHHHHhhc-C-CeEEEEeCCHHHHHHH-------HHHHHHcC--CCcEEEEeCchh
Q 043853           57 IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-V-KHVYGYEVVPQAISDA-------CRNAKLNN--ISNATFVQGDLN  125 (222)
Q Consensus        57 i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~-~~v~gvD~~~~~i~~a-------~~n~~~~~--~~~v~~~~~d~~  125 (222)
                      +.+.+...  ++.+|||+|||+|.+++.+|+. + .+++|+|+++.+++.|       +++++..|  ..+++++++|..
T Consensus       234 ml~~l~l~--~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~  311 (433)
T 1u2z_A          234 VYQQCQLK--KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  311 (433)
T ss_dssp             HHHHTTCC--TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence            44444433  4789999999999999999874 3 4899999999999999       99999888  567999998654


Q ss_pred             chhhhcCCCCCCCcEEEECCCCC--CccHHHHHHHHhCCCCcEEEEee
Q 043853          126 KIGGDFGNAFPKPDIVISDPNRP--GMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp~~--~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      .....+....+.||+|+++....  .....+.+..+.+++||.+++..
T Consensus       312 ~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          312 VDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             TTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            21100000013799999975421  11122223334489999988763

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.36  E-value=8.7e-13  Score=103.81  Aligned_cols=100  Identities=10%  Similarity=0.067  Sum_probs=72.8

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHH----HHHHcCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACR----NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~----n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.|++.+.+    +....+.++++++++|+.+++..    .+. |.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~----~~~-d~  101 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL----SGV-GE  101 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC----CCE-EE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC----CCC-CE
Confidence            4789999999999999999987  4599999999998886433    33345677899999999886532    123 77


Q ss_pred             EEECCCCCCcc-------HHHHHHH-HhCCCCcEEEEee
Q 043853          141 VISDPNRPGMH-------MKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~~~-------~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      ++...+.....       ..+++.+ +.++|+|.++++.
T Consensus       102 v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          102 LHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            76655432221       3444544 4479999998865

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.36  E-value=4e-12  Score=101.25  Aligned_cols=108  Identities=17%  Similarity=0.118  Sum_probs=80.7

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      +.+++...+    .++.+|||+|||+|.++..+++. .+++|+|+|+.+++.|++++...+. +++++++|+.+.+..  
T Consensus        23 ~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~--   94 (243)
T 3d2l_A           23 WVAWVLEQV----EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNR-HVDFWVQDMRELELP--   94 (243)
T ss_dssp             HHHHHHHHS----CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCGGGCCCS--
T ss_pred             HHHHHHHHc----CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCC-ceEEEEcChhhcCCC--
Confidence            344455544    23579999999999999999887 8999999999999999999987763 699999999876432  


Q ss_pred             CCCCCCcEEEECC-C--CC---CccHHHHHHH-HhCCCCcEEEEee
Q 043853          133 NAFPKPDIVISDP-N--RP---GMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       133 ~~~~~fD~ii~~p-p--~~---~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                         +.||+|++.. .  .-   .....+++.+ +.++|+|.+++++
T Consensus        95 ---~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           95 ---EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             ---SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence               4799999865 2  11   1123344444 3478999988765

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.36  E-value=2.6e-12  Score=103.60  Aligned_cols=99  Identities=17%  Similarity=0.114  Sum_probs=76.6

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++...  ++++++++|+.+.+.    +.+.||+|++..
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~----~~~~fD~v~~~~  128 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF----PENNFDLIYSRD  128 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC----CTTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC----CCCcEEEEeHHH
Confidence            4789999999999999999886 779999999999999999987654  579999999988643    235899999975


Q ss_pred             CCC----CccHHHHHHHH-hCCCCcEEEEee
Q 043853          146 NRP----GMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       146 p~~----~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ...    .....+++.+. .++|+|.+++..
T Consensus       129 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          129 AILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            311    11234444443 478999988765

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.36  E-value=4.5e-12  Score=106.44  Aligned_cols=110  Identities=22%  Similarity=0.196  Sum_probs=79.4

Q ss_pred             HHHHhcCCCCCCCeEEEEecccchhHHHHhhc-C--CeEEEEeCCHHHHHHHHHHHHHcC-----------CCcEEEEeC
Q 043853           57 IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-V--KHVYGYEVVPQAISDACRNAKLNN-----------ISNATFVQG  122 (222)
Q Consensus        57 i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~--~~v~gvD~~~~~i~~a~~n~~~~~-----------~~~v~~~~~  122 (222)
                      +...+...  ++.+|||+|||+|.++..+++. +  .+++|+|+++.+++.|++|+...+           .+++++..+
T Consensus        97 ~l~~l~~~--~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~  174 (336)
T 2b25_A           97 ILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  174 (336)
T ss_dssp             HHHHHTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence            44444333  4789999999999999999875 3  699999999999999999998632           246999999


Q ss_pred             chhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       123 d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                      |+.+....+.  .+.||+|++++|....   +++.+ +.++|+|.+++....
T Consensus       175 d~~~~~~~~~--~~~fD~V~~~~~~~~~---~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          175 DISGATEDIK--SLTFDAVALDMLNPHV---TLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             CTTCCC---------EEEEEECSSSTTT---THHHHGGGEEEEEEEEEEESS
T ss_pred             ChHHcccccC--CCCeeEEEECCCCHHH---HHHHHHHhcCCCcEEEEEeCC
Confidence            9987642221  1369999999874422   33433 447899988876644

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.36  E-value=4.7e-12  Score=104.69  Aligned_cols=103  Identities=19%  Similarity=0.158  Sum_probs=78.2

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHH--cC--CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKL--NN--ISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~--~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ++.+|||+|||+|.++..+++.  ..+++++|+|+.+++.|++++..  .+  .++++++.+|+.++....   .+.||+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~  166 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF---KNEFDV  166 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC---SSCEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC---CCCceE
Confidence            3579999999999999999876  35999999999999999999865  22  346999999998865432   247999


Q ss_pred             EEECCCCC--C-----ccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          141 VISDPNRP--G-----MHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       141 ii~~pp~~--~-----~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      |++|++..  +     ....+.+.+.+ ++|+|++++.+.
T Consensus       167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            99998633  1     22556665544 899999887653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.36  E-value=6.2e-12  Score=103.09  Aligned_cols=98  Identities=19%  Similarity=0.235  Sum_probs=78.2

Q ss_pred             CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.++..+++.   +.+++|+|+|+.+++.|++++...+. +++++++|+.+++..     +.||+|++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~-----~~fD~v~~   95 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN-----DKYDIAIC   95 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS-----SCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcC-----CCeeEEEE
Confidence            4789999999999999999876   46999999999999999999987665 799999999886532     47999999


Q ss_pred             CCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          144 DPN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      ...   ... ...+++.+ +.++|+|.+++..
T Consensus        96 ~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           96 HAFLLHMTT-PETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             ESCGGGCSS-HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CChhhcCCC-HHHHHHHHHHHcCCCCEEEEEe
Confidence            764   122 24555555 4478999887554

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.36  E-value=2e-12  Score=113.68  Aligned_cols=114  Identities=20%  Similarity=0.273  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhch
Q 043853           50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKI  127 (222)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~  127 (222)
                      ++.+.+.+...+...  ++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ +++.|+++++.++++ +++++++|+.++
T Consensus       143 t~~~~~~il~~l~~~--~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~  219 (480)
T 3b3j_A          143 TGTYQRAILQNHTDF--KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV  219 (480)
T ss_dssp             HHHHHHHHHHTGGGT--TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             HHHHHHHHHHhhhhc--CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC
Confidence            344444455544322  36899999999999999888764 4999999998 999999999999984 699999999875


Q ss_pred             hhhcCCCCCCCcEEEECCCCC-CccHHHHHHH----HhCCCCcEEEEee
Q 043853          128 GGDFGNAFPKPDIVISDPNRP-GMHMKLIKFL----LKLKAPRIVYVSC  171 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l----~~l~~~~~v~~~~  171 (222)
                      ...     ++||+|+++++.. .......+.+    +.|+|+|.++++.
T Consensus       220 ~~~-----~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          220 SLP-----EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CCS-----SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             ccC-----CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            321     4799999998711 1112233332    3478999887443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.35  E-value=3.9e-12  Score=99.24  Aligned_cols=101  Identities=11%  Similarity=0.045  Sum_probs=76.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++...  .++++++++|+.++..    +.+.||+|++++
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~----~~~~fD~v~~~~  115 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF----PSASFDVVLEKG  115 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS----CSSCEEEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC----CCCcccEEEECc
Confidence            477999999999999999988765 899999999999999998763  3468999999987632    224799999876


Q ss_pred             CCCC-----------------ccHHHHHHHH-hCCCCcEEEEeeCc
Q 043853          146 NRPG-----------------MHMKLIKFLL-KLKAPRIVYVSCNP  173 (222)
Q Consensus       146 p~~~-----------------~~~~~~~~l~-~l~~~~~v~~~~~~  173 (222)
                      +...                 ....+++.+. .++|+|.+++....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             HHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             chhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            4211                 1134444443 37899988766643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.34  E-value=9.9e-12  Score=103.14  Aligned_cols=102  Identities=17%  Similarity=0.126  Sum_probs=77.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKL--NNI--SNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~--~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +..+|||+|||+|.++..+++..  .+++++|+|+.+++.|++++..  .++  ++++++.+|+.++....   .+.||+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~---~~~fD~  171 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN---QDAFDV  171 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC---SSCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC---CCCceE
Confidence            46799999999999999998764  5999999999999999999875  233  46999999998865432   257999


Q ss_pred             EEECCCCCC------ccHHHHHHH-HhCCCCcEEEEee
Q 043853          141 VISDPNRPG------MHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~------~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      |++|++...      ....+.+.+ +.|+|+|++++..
T Consensus       172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            999987421      113445544 4489999988765

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1e-11  Score=102.38  Aligned_cols=114  Identities=17%  Similarity=0.190  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh---cCCeEEEEeCCHHHHHHHHHHHHHc--CCCcEEEEeCchhc
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR---WVKHVYGYEVVPQAISDACRNAKLN--NISNATFVQGDLNK  126 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~---~~~~v~gvD~~~~~i~~a~~n~~~~--~~~~v~~~~~d~~~  126 (222)
                      .+.+.+.....   .++.+|||+|||+|.++..+++   .+.+++|+|+|+.+++.|+++++..  ..++++++++|+.+
T Consensus        24 ~~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           24 DFYKMIDEYHD---GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             HHHHHHHHHCC---SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             HHHHHHHHHhc---CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence            34455555432   3478999999999999999994   4669999999999999999999886  23569999999988


Q ss_pred             hhhhc--CCCCCCCcEEEECCC--CCCccHHHHHHHHh-CCCCcEEEE
Q 043853          127 IGGDF--GNAFPKPDIVISDPN--RPGMHMKLIKFLLK-LKAPRIVYV  169 (222)
Q Consensus       127 ~~~~~--~~~~~~fD~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~  169 (222)
                      +....  ....+.||+|++...  .. -...+++.+.+ ++|+|.+++
T Consensus       101 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          101 FKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence            76431  001147999999764  22 23455555544 789999876

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.33  E-value=8.5e-12  Score=102.40  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=78.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHc--C---------CCcEEEEeCchhchhhhcCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLN--N---------ISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~--~---------~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      ++.+|||+|||+|.++..+++. ..+++++|+|+.+++.|++++ ..  +         .++++++.+|+.++...    
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~----  149 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----  149 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc----
Confidence            3679999999999999998876 349999999999999999998 33  2         34699999999887543    


Q ss_pred             CCCCcEEEECCCCC-----Cc-cHHHHHHHHh-CCCCcEEEEee
Q 043853          135 FPKPDIVISDPNRP-----GM-HMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       135 ~~~fD~ii~~pp~~-----~~-~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .+.||+|++|+|..     .+ ...+.+.+.+ ++|+|++++.+
T Consensus       150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            24799999998732     11 3555665544 79999988764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.32  E-value=7.5e-12  Score=102.13  Aligned_cols=98  Identities=12%  Similarity=-0.026  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+.+.+.+...+  + +|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..   .+++++++|+.++..... 
T Consensus        36 ~~~Iv~~~~~~~--~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~-  108 (271)
T 3fut_A           36 LRRIVEAARPFT--G-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV-  108 (271)
T ss_dssp             HHHHHHHHCCCC--S-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS-
T ss_pred             HHHHHHhcCCCC--C-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc-
Confidence            334455554433  6 999999999999999999888999999999999999998762   469999999988754311 


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHHh
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLLK  160 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~  160 (222)
                        ..+|.|++|+|+.-..+-+...+..
T Consensus       109 --~~~~~iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          109 --PQGSLLVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             --CTTEEEEEEECSSCCHHHHHHHHHH
T ss_pred             --cCccEEEecCcccccHHHHHHHhcC
Confidence              2589999999976554444444444

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.32  E-value=4.5e-11  Score=96.10  Aligned_cols=97  Identities=11%  Similarity=0.052  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      +.+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++..  .++++++++|+.++...  
T Consensus        18 ~~~~i~~~~~~~--~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~--   91 (244)
T 1qam_A           18 NIDKIMTNIRLN--EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFP--   91 (244)
T ss_dssp             HHHHHHTTCCCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCC--
T ss_pred             HHHHHHHhCCCC--CCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCcc--
Confidence            344454544332  478999999999999999998889999999999999999998864  34799999999887542  


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHHH
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKFL  158 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~l  158 (222)
                       ....| .|++|+|+... ..++..+
T Consensus        92 -~~~~~-~vv~nlPy~~~-~~~l~~~  114 (244)
T 1qam_A           92 -KNQSY-KIFGNIPYNIS-TDIIRKI  114 (244)
T ss_dssp             -SSCCC-EEEEECCGGGH-HHHHHHH
T ss_pred             -cCCCe-EEEEeCCcccC-HHHHHHH
Confidence             11245 78999997543 3343333

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.32  E-value=1.1e-11  Score=101.52  Aligned_cols=103  Identities=15%  Similarity=0.064  Sum_probs=79.8

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN--NI--SNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +..+|||+|||+|.++..+++.  ..+++++|+|+.+++.|++++...  +.  ++++++.+|+.++....   .++||+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~fD~  151 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS---ENQYDV  151 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC---CSCEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC---CCCeeE
Confidence            4679999999999999998876  359999999999999999998642  23  46999999998875432   257999


Q ss_pred             EEECCCCCC------ccHHHHHHH-HhCCCCcEEEEeeC
Q 043853          141 VISDPNRPG------MHMKLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       141 ii~~pp~~~------~~~~~~~~l-~~l~~~~~v~~~~~  172 (222)
                      |++|++...      ...++.+.+ +.|+|+|++++.+.
T Consensus       152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            999987421      124555555 44899999987753

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.32  E-value=2.7e-12  Score=106.30  Aligned_cols=101  Identities=20%  Similarity=0.155  Sum_probs=79.3

Q ss_pred             CCCCeEEEEecccchhHHHHh-hc--CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLA-RW--VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la-~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++.+|||+|||+|.++..++ ..  ..+++|+|+|+.+++.|++++...++.+ ++++++|+.+.+..     +.||+|
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~fD~v  191 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-----EGYDLL  191 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-----SCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-----CCeEEE
Confidence            357899999999999999885 22  4599999999999999999999888865 99999999886542     489999


Q ss_pred             EECCCCC---CccH--HHHHHHH-hCCCCcEEEEee
Q 043853          142 ISDPNRP---GMHM--KLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~---~~~~--~~~~~l~-~l~~~~~v~~~~  171 (222)
                      +++.+..   +...  .+++.+. .++|+|.+++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            9987521   2111  2445444 489999998776

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.32  E-value=1.8e-11  Score=99.48  Aligned_cols=112  Identities=20%  Similarity=0.199  Sum_probs=79.5

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHH------HHHHHHHHHHHcCCC-cEEEEeCc-h
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQ------AISDACRNAKLNNIS-NATFVQGD-L  124 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~------~i~~a~~n~~~~~~~-~v~~~~~d-~  124 (222)
                      .+.+.+...  ++.+|||+|||+|.++..+++..   .+++|+|+|+.      +++.|+++++..+++ +++++.+| .
T Consensus        34 ~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  111 (275)
T 3bkx_A           34 AIAEAWQVK--PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHTCC--TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred             HHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            344444333  47899999999999999998763   69999999997      999999999988874 69999998 3


Q ss_pred             hchhhhcCCCCCCCcEEEECCCC--CCccHHHHHHHHhCC-CCcEEEEee
Q 043853          125 NKIGGDFGNAFPKPDIVISDPNR--PGMHMKLIKFLLKLK-APRIVYVSC  171 (222)
Q Consensus       125 ~~~~~~~~~~~~~fD~ii~~pp~--~~~~~~~~~~l~~l~-~~~~v~~~~  171 (222)
                      ......+  +.+.||+|++....  ......+.+.++.+. ++|.+++..
T Consensus       112 ~~~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          112 SDDLGPI--ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TTCCGGG--TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             hhccCCC--CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            2211111  22579999997641  111234666666654 488887654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.32  E-value=8.4e-13  Score=104.99  Aligned_cols=100  Identities=14%  Similarity=0.070  Sum_probs=76.2

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCC-HHHHHHH---HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVV-PQAISDA---CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~-~~~i~~a---~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ++.+|||+|||+|.++..+++.  ..+|+|+|+| +.|++.|   ++++...+++++++.++|+.+++....   +.+|.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~---d~v~~  100 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELK---NIADS  100 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGT---TCEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhcc---CeEEE
Confidence            4789999999999999999853  4589999999 6666666   888888888889999999988854321   46788


Q ss_pred             EEECCCCCCc-------cHHHHHHHHh-CCCCcEEEE
Q 043853          141 VISDPNRPGM-------HMKLIKFLLK-LKAPRIVYV  169 (222)
Q Consensus       141 ii~~pp~~~~-------~~~~~~~l~~-l~~~~~v~~  169 (222)
                      +.+++|....       ...++..+.+ ++|+|.+++
T Consensus       101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            8888764321       1334555544 799999887

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.32  E-value=2.7e-11  Score=101.23  Aligned_cols=102  Identities=19%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKL--NNI--SNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~--~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ++.+|||+|||+|.++..+++.  ..+++++|+|+.+++.|++++..  ++.  ++++++.+|+.++....   .+.||+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fDv  192 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDV  192 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc---CCCceE
Confidence            3579999999999999999876  45999999999999999999875  222  46999999998865432   247999


Q ss_pred             EEECCCCC-----Cc-cHHHHHHHHh-CCCCcEEEEee
Q 043853          141 VISDPNRP-----GM-HMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~-----~~-~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      |++|++..     .+ ...+.+.+.+ ++|+|++++..
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            99998521     11 1566666544 79999988765

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.32  E-value=4.5e-12  Score=102.49  Aligned_cols=95  Identities=20%  Similarity=0.155  Sum_probs=74.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC-
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP-  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p-  145 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++..     +++++++|+.+++.     .+.||+|++.. 
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-----~~~fD~v~~~~~  119 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL-----GRRFSAVTCMFS  119 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-----SCCEEEEEECTT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-----cCCcCEEEEcCc
Confidence            46799999999999999999888899999999999999998753     68999999988654     25899999975 


Q ss_pred             CCCC-----ccHHHHHHHH-hCCCCcEEEEee
Q 043853          146 NRPG-----MHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       146 p~~~-----~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ...-     ....+++.+. .++|+|.++++.
T Consensus       120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          120 SIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            3111     1223444443 378999999864

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.31  E-value=8.4e-12  Score=95.96  Aligned_cols=103  Identities=14%  Similarity=0.053  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchh
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIG  128 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~  128 (222)
                      .++..+...+    ++..+|||+|||+|.+++.++..  ..+++|+|+|+.|++.+++|+..+|+. ++++  .|..+..
T Consensus        38 ~fY~~~~~~l----~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~  111 (200)
T 3fzg_A           38 DFYTYVFGNI----KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV  111 (200)
T ss_dssp             HHHHHHHHHS----CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH
T ss_pred             HHHHHHHhhc----CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC
Confidence            3444455544    23679999999999999999665  339999999999999999999999997 4776  5554432


Q ss_pred             hhcCCCCCCCcEEEECCC------CCCccHHHHHHHHhCCCCcEEE
Q 043853          129 GDFGNAFPKPDIVISDPN------RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~pp------~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      .     ...||+|++.--      +.+.   ..+.+..++++++++
T Consensus       112 ~-----~~~~DvVLa~k~LHlL~~~~~a---l~~v~~~L~pggvfI  149 (200)
T 3fzg_A          112 Y-----KGTYDVVFLLKMLPVLKQQDVN---ILDFLQLFHTQNFVI  149 (200)
T ss_dssp             T-----TSEEEEEEEETCHHHHHHTTCC---HHHHHHTCEEEEEEE
T ss_pred             C-----CCCcChhhHhhHHHhhhhhHHH---HHHHHHHhCCCCEEE
Confidence            2     247999988642      2222   224455578887665

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.30  E-value=1.4e-11  Score=95.94  Aligned_cols=100  Identities=19%  Similarity=0.106  Sum_probs=74.5

Q ss_pred             CCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++. .+++.+.+++|+|+|+.+++.|++++...+. +++++++|+.+.+.    +.+.||+|++..
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----~~~~fD~v~~~~   97 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPF----KDESMSFVYSYG   97 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCS----CTTCEEEEEECS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCC----CCCceeEEEEcC
Confidence            36899999999999855 4455667999999999999999999987763 68999999987642    224799999875


Q ss_pred             CCCC----ccHHHHHHH-HhCCCCcEEEEee
Q 043853          146 NRPG----MHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       146 p~~~----~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      ....    ....+++.+ +.++|+|.++++.
T Consensus        98 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           98 TIFHMRKNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            3111    123444444 3378999988765

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.30  E-value=2.1e-12  Score=106.51  Aligned_cols=106  Identities=21%  Similarity=0.255  Sum_probs=74.7

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCC------------------------------
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNI------------------------------  114 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~------------------------------  114 (222)
                      ++.+|||+|||+|.+++.+++.  ..+++|+|+|+.+++.|+++++..+.                              
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            4789999999999999999986  45999999999999999999776542                              


Q ss_pred             ----------------------------CcEEEEeCchhchhhhc-CCCCCCCcEEEECCCCCC--------ccHHHHHH
Q 043853          115 ----------------------------SNATFVQGDLNKIGGDF-GNAFPKPDIVISDPNRPG--------MHMKLIKF  157 (222)
Q Consensus       115 ----------------------------~~v~~~~~d~~~~~~~~-~~~~~~fD~ii~~pp~~~--------~~~~~~~~  157 (222)
                                                  .++++.++|+......+ ....+.||+|++......        ....+++.
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        26999999987543211 112358999999754100        11233443


Q ss_pred             H-HhCCCCcEEEEeeC
Q 043853          158 L-LKLKAPRIVYVSCN  172 (222)
Q Consensus       158 l-~~l~~~~~v~~~~~  172 (222)
                      + +.|+|+|.+++...
T Consensus       206 ~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             HHHHEEEEEEEEEECC
T ss_pred             HHHHhCCCcEEEEecC
Confidence            3 34899999998753

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.30  E-value=7.8e-12  Score=101.46  Aligned_cols=115  Identities=10%  Similarity=0.011  Sum_probs=75.1

Q ss_pred             HHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcC--C-------------------
Q 043853           57 IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNN--I-------------------  114 (222)
Q Consensus        57 i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~--~-------------------  114 (222)
                      +.+++.....++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++++.+.  +                   
T Consensus        45 ~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~  124 (263)
T 2a14_A           45 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRW  124 (263)
T ss_dssp             HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGH
T ss_pred             HHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcch
Confidence            333333233457899999999998888766554 479999999999999999876542  0                   


Q ss_pred             --------CcEE-EEeCchhchhhhcCCCCCCCcEEEECCC------CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          115 --------SNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPN------RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       115 --------~~v~-~~~~d~~~~~~~~~~~~~~fD~ii~~pp------~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                              .+++ ++++|+.+.........+.||+|++.--      ...-...++..+.+ |+|||.++++.
T Consensus       125 ~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          125 EEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                    1243 8899998742110001247999999632      11111234444434 89999988775

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.30  E-value=1.2e-11  Score=103.12  Aligned_cols=102  Identities=16%  Similarity=0.111  Sum_probs=80.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHH--cC---CCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKL--NN---ISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~--~~---~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      +..+|||+|||+|.++..+++.  ..+++++|+|+.+++.|++++..  .+   .++++++.+|+.++....   .+.||
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD  153 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---EERYD  153 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---CCCEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc---CCCcc
Confidence            3579999999999999999876  45999999999999999999865  22   356999999998865432   25799


Q ss_pred             EEEECCCCCC---c------cHHHHHHHHh-CCCCcEEEEee
Q 043853          140 IVISDPNRPG---M------HMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~~~---~------~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      +|+++++...   -      ...+.+.+.+ |+|+|++++.+
T Consensus       154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            9999987432   1      3566666654 78999988765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.30  E-value=1.7e-11  Score=95.90  Aligned_cols=96  Identities=20%  Similarity=0.114  Sum_probs=74.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++    .+.++++++++|+.++.     ..+.||+|+++..
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~~~  116 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT-----PDRQWDAVFFAHW  116 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC-----CSSCEEEEEEESC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC-----CCCceeEEEEech
Confidence            36799999999999999999888899999999999999988    55667999999998762     2358999999753


Q ss_pred             CCCcc----HHHHHHHH-hCCCCcEEEEee
Q 043853          147 RPGMH----MKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       147 ~~~~~----~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ...+.    ..+++.+. .++|+|.+++..
T Consensus       117 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          117 LAHVPDDRFEAFWESVRSAVAPGGVVEFVD  146 (218)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            11111    34444443 478988887664

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.30  E-value=1.8e-11  Score=97.86  Aligned_cols=102  Identities=17%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-CCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-AFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++..   ..+++++++|+.+......- ....||+|+++.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~  132 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIHSEIGDANIYMRT  132 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccccccCccEEEEcc
Confidence            47799999999999999999888899999999999999999872   33699999999886542100 002489999875


Q ss_pred             CCC--C--ccHHHHHHHH-hCCCCcEEEEee
Q 043853          146 NRP--G--MHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       146 p~~--~--~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ...  .  ....+++.+. .++|+|.+++..
T Consensus       133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            311  1  2245555554 479999866554

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.29  E-value=2.9e-11  Score=100.32  Aligned_cols=104  Identities=21%  Similarity=0.145  Sum_probs=78.2

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc----CCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN----NISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ++.+|||+|||+|.++..+++.  ..+++++|+|+.+++.|++++...    ..++++++.+|+.++....  ..+.||+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--~~~~fDv  172 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT--PDNTYDV  172 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS--CTTCEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc--cCCceeE
Confidence            4679999999999999999876  359999999999999999987431    2346999999998876431  1257999


Q ss_pred             EEECCCCCC-----c-cHHHHHHHHh-CCCCcEEEEeeC
Q 043853          141 VISDPNRPG-----M-HMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       141 ii~~pp~~~-----~-~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      |++|++...     + ...+++.+.+ |+|+|++++.+.
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE  211 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            999986321     1 1455665544 899999887654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.29  E-value=1.5e-11  Score=97.86  Aligned_cols=98  Identities=18%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++...   .+++++++|+.+.+.    +.+.||+|++..
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~----~~~~fD~v~~~~  115 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL----PQDSFDLAYSSL  115 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC----CTTCEEEEEEES
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC----CCCCceEEEEec
Confidence            478999999999999999988776 999999999999999987643   358999999987642    225799999876


Q ss_pred             CC--CCccHHHHHHHH-hCCCCcEEEEee
Q 043853          146 NR--PGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       146 p~--~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ..  ......+++.+. .++|+|.++++.
T Consensus       116 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          116 ALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence            41  112345555554 478999988765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.28  E-value=3.8e-11  Score=96.69  Aligned_cols=106  Identities=14%  Similarity=0.043  Sum_probs=76.0

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCC-----------------------------C
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNI-----------------------------S  115 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~-----------------------------~  115 (222)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++...+.                             .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            3568999999999999998888776 999999999999999998865431                             1


Q ss_pred             cE-EEEeCchhchhhhcCCCCCCCcEEEECCCCC----C--ccHHHHHHHHh-CCCCcEEEEee
Q 043853          116 NA-TFVQGDLNKIGGDFGNAFPKPDIVISDPNRP----G--MHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       116 ~v-~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~----~--~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ++ ++.++|+.+.........+.||+|++.....    .  ....++..+.+ ++|+|.+++..
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            27 8999999876431111124799999865311    1  22344444443 78999988765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.28  E-value=7.8e-12  Score=103.52  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-CCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-AFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|+++..+++..  .+++|+|+|+.+++.|++|++.++ ++++++++|+.++...+.. ....||.|++
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~  104 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGILM  104 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEEEE
Confidence            47899999999999999998763  699999999999999999998887 6799999999887532211 1137999999


Q ss_pred             CCCCC
Q 043853          144 DPNRP  148 (222)
Q Consensus       144 ~pp~~  148 (222)
                      |||..
T Consensus       105 D~gvS  109 (301)
T 1m6y_A          105 DLGVS  109 (301)
T ss_dssp             ECSCC
T ss_pred             cCccc
Confidence            99854

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=1.2e-11  Score=100.20  Aligned_cols=106  Identities=18%  Similarity=0.132  Sum_probs=77.4

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      +.+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++.      +++++++|+.+++.   
T Consensus        22 ~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---   90 (261)
T 3ege_A           22 IVNAIINLLNLP--KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLAL---   90 (261)
T ss_dssp             HHHHHHHHHCCC--TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCS---
T ss_pred             HHHHHHHHhCCC--CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCC---
Confidence            344455555433  4789999999999999999987789999999999999887654      69999999987653   


Q ss_pred             CCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCcE-EEEeeC
Q 043853          133 NAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPRI-VYVSCN  172 (222)
Q Consensus       133 ~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~-v~~~~~  172 (222)
                       +.+.||+|++...   ... ...+++.+ +.++ +|. ++++.+
T Consensus        91 -~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           91 -PDKSVDGVISILAIHHFSH-LEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             -CTTCBSEEEEESCGGGCSS-HHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             -CCCCEeEEEEcchHhhccC-HHHHHHHHHHHhC-CcEEEEEEcC
Confidence             2358999999764   222 24555554 4478 884 444444

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.28  E-value=3e-11  Score=100.30  Aligned_cols=107  Identities=16%  Similarity=0.069  Sum_probs=77.9

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHc-------CCCcEEEEeCchhchhh--hcCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLN-------NISNATFVQGDLNKIGG--DFGNAFP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~-------~~~~v~~~~~d~~~~~~--~~~~~~~  136 (222)
                      ++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.|+++....       +..+++++++|+.+...  .+..+.+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            4679999999999999988864 559999999999999999998765       33469999999987641  1211224


Q ss_pred             CCcEEEECCCCCCc------cHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          137 KPDIVISDPNRPGM------HMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       137 ~fD~ii~~pp~~~~------~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                      .||+|+++......      ...++..+.+ ++|+|.+++++..
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            79999997642111      1345555544 7899998877643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.27  E-value=3e-11  Score=91.11  Aligned_cols=93  Identities=14%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++     .+++++..+| ..+      +.+.||+|+++..
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~------~~~~~D~v~~~~~   84 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----FDSVITLSDP-KEI------PDNSVDFILFANS   84 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGS------CTTCEEEEEEESC
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCC------CCCceEEEEEccc
Confidence            477999999999999999988766999999999999999998     4478999999 222      2258999998764


Q ss_pred             CC--CccHHHHHHHH-hCCCCcEEEEee
Q 043853          147 RP--GMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       147 ~~--~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ..  .-...+++.+. .++|+|.+++..
T Consensus        85 l~~~~~~~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           85 FHDMDDKQHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             STTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccCHHHHHHHHHHhcCCCCEEEEEE
Confidence            21  12345555554 478999887664

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.27  E-value=1.2e-11  Score=101.42  Aligned_cols=102  Identities=21%  Similarity=0.149  Sum_probs=78.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++...+.. +++++++|+.+.+..   ..+.||+|+++
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~v~~~  140 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD---LGKEFDVISSQ  140 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC---CSSCEEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC---CCCCcCEEEEC
Confidence            478999999999999998887654 9999999999999999999888774 599999999876431   12579999987


Q ss_pred             CCC----C--CccHHHHHHHHh-CCCCcEEEEee
Q 043853          145 PNR----P--GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       145 pp~----~--~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ...    .  .....+++.+.+ ++|+|.+++..
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            531    1  112344444433 78999888765

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.27  E-value=2.5e-11  Score=103.73  Aligned_cols=104  Identities=25%  Similarity=0.307  Sum_probs=78.3

Q ss_pred             CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHc-----C-C--CcEEEEeCchhchhhhc--CC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLN-----N-I--SNATFVQGDLNKIGGDF--GN  133 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~-----~-~--~~v~~~~~d~~~~~~~~--~~  133 (222)
                      ++.+|||+|||+|.++..+++.   ..+++|+|+|+.+++.|+++++.+     | .  ++++++++|+.++....  .-
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            4789999999999999988875   349999999999999999998765     3 2  47999999998763210  11


Q ss_pred             CCCCCcEEEECCC---CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          134 AFPKPDIVISDPN---RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       134 ~~~~fD~ii~~pp---~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      +.+.||+|+++..   ... ...+++.+. .|+|+|.++++.
T Consensus       163 ~~~~fD~V~~~~~l~~~~d-~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTN-KLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEEEccchhcCCC-HHHHHHHHHHHcCCCCEEEEEE
Confidence            2358999999874   122 345555554 489999988764

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.27  E-value=9.9e-12  Score=100.64  Aligned_cols=91  Identities=20%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc-------C-C-CcEEEEeCchh
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN-------N-I-SNATFVQGDLN  125 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~-------~-~-~~v~~~~~d~~  125 (222)
                      +.+.+.+...+....+|||+|||+|..++.++..+.+|+++|+++.+++.++++++..       + + ++++++++|+.
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~  155 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence            3344445444312279999999999999999987779999999999887777776532       2 3 46999999999


Q ss_pred             chhhhcCCCCCCCcEEEECCCCC
Q 043853          126 KIGGDFGNAFPKPDIVISDPNRP  148 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp~~  148 (222)
                      ++...+.   +.||+|++|||+.
T Consensus       156 ~~L~~~~---~~fDvV~lDP~y~  175 (258)
T 2oyr_A          156 TALTDIT---PRPQVVYLDPMFP  175 (258)
T ss_dssp             HHSTTCS---SCCSEEEECCCCC
T ss_pred             HHHHhCc---ccCCEEEEcCCCC
Confidence            8765443   3699999999854

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=1.7e-11  Score=99.98  Aligned_cols=95  Identities=23%  Similarity=0.197  Sum_probs=74.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++.     +++++..+|+.+++.     .+.||+|++...
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-----~~~fD~v~~~~~  126 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV-----DKPLDAVFSNAM  126 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC-----SSCEEEEEEESC
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc-----CCCcCEEEEcch
Confidence            4789999999999999999887779999999999999999875     468899999987653     147999999764


Q ss_pred             C--CCccHHHHHHH-HhCCCCcEEEEee
Q 043853          147 R--PGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       147 ~--~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .  -.-...++..+ +.++|+|.+++..
T Consensus       127 l~~~~d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          127 LHWVKEPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhCcCHHHHHHHHHHhcCCCcEEEEEe
Confidence            1  11124555555 4489999988765

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.27  E-value=2.4e-11  Score=100.77  Aligned_cols=103  Identities=14%  Similarity=0.069  Sum_probs=72.1

Q ss_pred             CCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC------cEEEEeCch------hchhhhcCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNIS------NATFVQGDL------NKIGGDFGN  133 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~------~v~~~~~d~------~~~~~~~~~  133 (222)
                      ++.+|||+|||+|..+..++. .+.+|+|+|+|+.|++.|++.....+..      ++++.+.|+      .++....  
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~--  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF--  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC--
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc--
Confidence            468999999999987765544 4569999999999999999998776543      267888877      3222111  


Q ss_pred             CCCCCcEEEECCC------CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          134 AFPKPDIVISDPN------RPGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       134 ~~~~fD~ii~~pp------~~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      +.+.||+|++.-.      .... ..++..+.+ |+|||.+++++.
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~-~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHY-ATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTH-HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHHHH-HHHHHHHHHHcCCCCEEEEEeC
Confidence            2258999987531      1122 455555544 899999987764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.26  E-value=4.1e-11  Score=98.43  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=80.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ++.+|||+|||+|.++..+++..  .+++++|+|+.+++.|++++...+    .++++++.+|+.++....   .+.||+
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~  154 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDV  154 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceE
Confidence            46799999999999999998763  599999999999999999986542    346999999998875432   257999


Q ss_pred             EEECCCCC-----Cc-cHHHHHHHHh-CCCCcEEEEeeC
Q 043853          141 VISDPNRP-----GM-HMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       141 ii~~pp~~-----~~-~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      |++|++..     .+ ...+.+.+.+ ++|+|++++.+.
T Consensus       155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            99987522     11 1466666544 899999887753

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.26  E-value=4.6e-11  Score=106.38  Aligned_cols=164  Identities=15%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-----------------CCeEEEEeCCHHHH
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-----------------VKHVYGYEVVPQAI  102 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-----------------~~~v~gvD~~~~~i  102 (222)
                      +.|| ++......+++.    +...   ..+|+|++||||++.+.+++.                 ...++|+|+++.++
T Consensus       225 G~fy-TP~~Vv~lmv~l----l~p~---~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~  296 (544)
T 3khk_A          225 GQYY-TPKSIVTLIVEM----LEPY---KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW  296 (544)
T ss_dssp             TTTC-CCHHHHHHHHHH----HCCC---SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH
T ss_pred             CeEe-CCHHHHHHHHHH----HhcC---CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH
Confidence            3455 345555554443    3221   239999999999999876532                 24799999999999


Q ss_pred             HHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-------------------------c-----
Q 043853          103 SDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-------------------------H-----  151 (222)
Q Consensus       103 ~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-------------------------~-----  151 (222)
                      ..|+.|+..++++. +.+.++|....+..   ...+||+|++|||....                         .     
T Consensus       297 ~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~---~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~  373 (544)
T 3khk_A          297 KLAAMNMVIRGIDFNFGKKNADSFLDDQH---PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNA  373 (544)
T ss_dssp             HHHHHHHHHTTCCCBCCSSSCCTTTSCSC---TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCT
T ss_pred             HHHHHHHHHhCCCcccceeccchhcCccc---ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcch
Confidence            99999999998853 55588887654321   12479999999995421                         0     


Q ss_pred             -HHHHH-HHHhCCCCcEEEEeeCcc------chHhhHH-HhhccCCCCccCCC-eEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          152 -MKLIK-FLLKLKAPRIVYVSCNPA------TCARDLD-YLCHGVGDQNIKGC-YKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       152 -~~~~~-~l~~l~~~~~v~~~~~~~------~~~~~~~-~l~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                       -.++. .+..++++|.+.+-+...      .....++ .+.        +.+ ..-+-.-|-.+|..+..-.+|.+|.|
T Consensus       374 ~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Ll--------e~~~l~aII~LP~~lF~~t~i~t~Ilvl~K  445 (544)
T 3khk_A          374 NFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLV--------EQDLVECMVALPGQLFTNTQIPACIWFLTK  445 (544)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHH--------HTTCEEEEEECCTTBCCSCSSCEEEEEEES
T ss_pred             hHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHH--------hCCcHhEEEECCCCCCCCCCCCeEEEEEec
Confidence             12334 345578877754333211      1223343 332        333 33333345678998888999999986


Q ss_pred             C
Q 043853          222 S  222 (222)
Q Consensus       222 ~  222 (222)
                      .
T Consensus       446 ~  446 (544)
T 3khk_A          446 D  446 (544)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.26  E-value=1.9e-11  Score=101.56  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=79.4

Q ss_pred             CeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           69 EIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      .+|||||||+|.++..+++.  ..+++++|+|+.+++.|++++.....++++++.+|+.++.....  .+.||+|++|.+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT--PASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC--TTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc--CCCCCEEEECCC
Confidence            39999999999999998874  34899999999999999999865544579999999998865432  247999999864


Q ss_pred             CCC------ccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          147 RPG------MHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       147 ~~~------~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      ...      ...++.+.+.+ |+++|++++.+.
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            211      12566666644 899999876664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.26  E-value=2e-11  Score=98.16  Aligned_cols=95  Identities=20%  Similarity=0.264  Sum_probs=75.1

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.++++     .++++++.+|+.+++.     .+.||+|+++
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~-----~~~fD~v~~~  102 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP-----AQKADLLYAN  102 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC-----SSCEEEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc-----cCCcCEEEEe
Confidence            4689999999999999999886  67999999999999999987     3468999999987651     2579999997


Q ss_pred             CCC--CCccHHHHHHHH-hCCCCcEEEEee
Q 043853          145 PNR--PGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~--~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ...  ..-...+++.+. .++|+|.+++++
T Consensus       103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          103 AVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             SCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            641  112345555554 478999988776

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.25  E-value=2.1e-10  Score=104.78  Aligned_cols=104  Identities=13%  Similarity=0.205  Sum_probs=73.0

Q ss_pred             ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-----CeEEEEeCCHHHHHHH--HHHHHHc-
Q 043853           41 SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-----KHVYGYEVVPQAISDA--CRNAKLN-  112 (222)
Q Consensus        41 ~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-----~~v~gvD~~~~~i~~a--~~n~~~~-  112 (222)
                      +-+.++......+++++.........++.+|+|+|||+|.+++.+++..     .+++|+|+++.+++.|  +.|+..+ 
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            3344557777776666444443222347899999999999999888754     2799999999999999  7776553 


Q ss_pred             ---CCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853          113 ---NISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus       113 ---~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                         +++...+...|..+....   ....||+|++|||+
T Consensus       375 LlhGi~~~~I~~dD~L~~~~~---~~~kFDVVIgNPPY  409 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNPE---DFANVSVVVMNPPY  409 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCGG---GGTTEEEEEECCBC
T ss_pred             hhcCCCcceEEecchhccccc---ccCCCCEEEECCCc
Confidence               333346667777653221   12479999999996

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.24  E-value=1.6e-11  Score=98.29  Aligned_cols=96  Identities=13%  Similarity=0.112  Sum_probs=72.6

Q ss_pred             CCeEEEEecccchhHHHHhhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch--hhhcCCCCCCCc
Q 043853           68 SEIVLDLFCGTGTIGLTLARW------VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI--GGDFGNAFPKPD  139 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~------~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~fD  139 (222)
                      +.+|||+|||+|..+..+++.      ..+|+|+|+|+.+++.|+.    . .++++++++|+.+.  .....  ...||
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~l~~~~--~~~fD  154 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTTFEHLR--EMAHP  154 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGGGGGGS--SSCSS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHHHHhhc--cCCCC
Confidence            579999999999999999876      4699999999999998871    1 24699999999875  22111  12699


Q ss_pred             EEEECCCCCCccHHHHHHHH--hCCCCcEEEEee
Q 043853          140 IVISDPNRPGMHMKLIKFLL--KLKAPRIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~--~l~~~~~v~~~~  171 (222)
                      +|+++...... ..++..+.  .++++|+++++.
T Consensus       155 ~I~~d~~~~~~-~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          155 LIFIDNAHANT-FNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             EEEEESSCSSH-HHHHHHHHHHTCCTTCEEEECS
T ss_pred             EEEECCchHhH-HHHHHHHHHhhCCCCCEEEEEe
Confidence            99988764433 45555543  689999998753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.24  E-value=1.9e-11  Score=101.81  Aligned_cols=102  Identities=20%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN--NI--SNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +..+|||+|||+|.++..+++.  ..+++++|+|+.+++.|++++...  ++  ++++++.+|+.++...   ..+.||+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~  184 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDV  184 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceE
Confidence            3579999999999999999876  359999999999999999998653  32  4699999999886543   1257999


Q ss_pred             EEECCCCC-----Ccc-HHHHHHHH-hCCCCcEEEEee
Q 043853          141 VISDPNRP-----GMH-MKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~-----~~~-~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      |++|++..     .+. ..+.+.+. .|+|+|++++..
T Consensus       185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            99998521     111 45555554 489999998875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.22  E-value=6.7e-11  Score=96.89  Aligned_cols=98  Identities=11%  Similarity=-0.048  Sum_probs=70.6

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCe----EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH----VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG  129 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~----v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~  129 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++..+++.+.+    ++|+|+|+.+++.++++.    .++++++++|+.++..
T Consensus        31 ~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           31 IDAIVAAIRPE--RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDF  104 (279)
T ss_dssp             HHHHHHHHCCC--TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCG
T ss_pred             HHHHHHhcCCC--CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCCh
Confidence            33444544433  3789999999999999999987766    999999999999999983    3469999999988754


Q ss_pred             hcCCC-C-CCCcEEEECCCCCCccHHHHHHH
Q 043853          130 DFGNA-F-PKPDIVISDPNRPGMHMKLIKFL  158 (222)
Q Consensus       130 ~~~~~-~-~~fD~ii~~pp~~~~~~~~~~~l  158 (222)
                      ....+ . .....|++|+|+.-. ..++..+
T Consensus       105 ~~~~~~~~~~~~~vv~NlPY~is-s~il~~l  134 (279)
T 3uzu_A          105 GSIARPGDEPSLRIIGNLPYNIS-SPLLFHL  134 (279)
T ss_dssp             GGGSCSSSSCCEEEEEECCHHHH-HHHHHHH
T ss_pred             hHhcccccCCceEEEEccCcccc-HHHHHHH
Confidence            31111 0 134689999996432 3444333

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.22  E-value=3.6e-11  Score=95.37  Aligned_cols=95  Identities=22%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC-
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP-  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p-  145 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++.     ++++++++|+.+...     .+.||+|++.. 
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-----~~~~D~v~~~~~  109 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-----GRKFSAVVSMFS  109 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-----SSCEEEEEECTT
T ss_pred             CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-----CCCCcEEEEcCc
Confidence            4689999999999999999887779999999999999999874     468999999987643     24799999533 


Q ss_pred             C--CC---CccHHHHHHHH-hCCCCcEEEEee
Q 043853          146 N--RP---GMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       146 p--~~---~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      .  .-   .....+++.+. .++|+|.++++.
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          110 SVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            1  11   11234444443 378999988875

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.21  E-value=5.7e-11  Score=92.68  Aligned_cols=94  Identities=18%  Similarity=0.050  Sum_probs=71.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+  ...+++|+|+|+.+++.++++.     ++++++++|+.+.+.    +.+.||+|++...
T Consensus        36 ~~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----~~~~fD~v~~~~~  104 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF----PGESFDVVLLFTT  104 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS----CSSCEEEEEEESC
T ss_pred             CCCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC----CCCcEEEEEEcCh
Confidence            5789999999999999887  3339999999999999999886     468999999987643    2247999998764


Q ss_pred             CC--CccHHHHHHHH-hCCCCcEEEEee
Q 043853          147 RP--GMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       147 ~~--~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ..  .....+++.+. .++|+|.++++.
T Consensus       105 l~~~~~~~~~l~~~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A          105 LEFVEDVERVLLEARRVLRPGGALVVGV  132 (211)
T ss_dssp             TTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            21  12345555554 478999888765

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.21  E-value=1e-10  Score=94.27  Aligned_cols=98  Identities=13%  Similarity=0.093  Sum_probs=72.0

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  131 (222)
                      +.+.+.+.+...  ++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.++++    +..+++++++|+.++....
T Consensus        19 i~~~iv~~~~~~--~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           19 VLKKIAEELNIE--EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHTTCC--TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHhcCCC--CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhH
Confidence            344455555433  3789999999999999999987 47999999999999999987    2346999999998875432


Q ss_pred             CCCCCCCcEEEECCCCCCccHHHHHHHH
Q 043853          132 GNAFPKPDIVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp~~~~~~~~~~~l~  159 (222)
                      ..  + ...|++|+|+....+-+...+.
T Consensus        93 ~~--~-~~~vv~NlPy~i~~~il~~ll~  117 (249)
T 3ftd_A           93 LG--K-ELKVVGNLPYNVASLIIENTVY  117 (249)
T ss_dssp             SC--S-SEEEEEECCTTTHHHHHHHHHH
T ss_pred             cc--C-CcEEEEECchhccHHHHHHHHh
Confidence            11  1 3489999998654333344443

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.20  E-value=1.4e-10  Score=93.74  Aligned_cols=95  Identities=17%  Similarity=0.089  Sum_probs=73.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++..    .+  ++++|+.+++.    +.+.||+|++...
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~----~~~~fD~v~~~~~  123 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPF----PSGAFEAVLALGD  123 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCS----CTTCEEEEEECSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCC----CCCCEEEEEEcch
Confidence            46899999999999999999888899999999999999998754    22  88889877642    2257999999753


Q ss_pred             ----CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          147 ----RPGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       147 ----~~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                          ... ...+++.+.+ ++|+|.++++..
T Consensus       124 ~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          124 VLSYVEN-KDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             HHHHCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhcccc-HHHHHHHHHHHcCCCeEEEEEeC
Confidence                122 3555555544 789999887653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.19  E-value=6.2e-11  Score=106.31  Aligned_cols=76  Identities=24%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +-+|||+|||.|.++..+|+.+.+|+|||.++.+++.|+..+...+.-++++.++++.++.....  .+.||+|++.-
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~v~~~e  142 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALE--EGEFDLAIGLS  142 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCC--TTSCSEEEEES
T ss_pred             CCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhcc--CCCccEEEECc
Confidence            46999999999999999999999999999999999999999998876579999999998854322  24799999864

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.19  E-value=7.3e-10  Score=98.42  Aligned_cols=101  Identities=15%  Similarity=0.158  Sum_probs=74.6

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---------------CCeEEEEeCCHHHHHH
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---------------VKHVYGYEVVPQAISD  104 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---------------~~~v~gvD~~~~~i~~  104 (222)
                      +.||. +.+....    +.+++.  +.++.+|+|.+||||++.+.+.+.               ...++|+|+++.++..
T Consensus       197 GqfyT-P~~Vv~l----mv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~l  269 (530)
T 3ufb_A          197 GEFYT-PRPVVRF----MVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLL  269 (530)
T ss_dssp             CCCCC-CHHHHHH----HHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHH
T ss_pred             ceECC-cHHHHHH----HHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHH
Confidence            56664 3455444    444443  234779999999999999866542               1369999999999999


Q ss_pred             HHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853          105 ACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus       105 a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      |+-|+..+|++...+..+|....+.....+..+||+|++|||.
T Consensus       270 a~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          270 VQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPF  312 (530)
T ss_dssp             HHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCS
T ss_pred             HHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCC
Confidence            9999999998777888999876543322223479999999995

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.19  E-value=4.9e-10  Score=86.70  Aligned_cols=120  Identities=16%  Similarity=0.182  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG  128 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~  128 (222)
                      ..-.+.++.... ... .++.+|||+|||+|.++..+++...+|+|+|+++..           ..++++++++|+.+..
T Consensus         9 a~~KL~ei~~~~-~~~-~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~   75 (191)
T 3dou_A            9 AAFKLEFLLDRY-RVV-RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EIAGVRFIRCDIFKET   75 (191)
T ss_dssp             HHHHHHHHHHHH-CCS-CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CCTTCEEEECCTTSSS
T ss_pred             HHHHHHHHHHHc-CCC-CCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cCCCeEEEEccccCHH
Confidence            344445544443 222 247899999999999999999888899999999741           2457999999987743


Q ss_pred             hh------cC-CCCCCCcEEEECCCCC--Ccc-----------HHHHHH-HHhCCCCcEEEEeeCccchHhhHH
Q 043853          129 GD------FG-NAFPKPDIVISDPNRP--GMH-----------MKLIKF-LLKLKAPRIVYVSCNPATCARDLD  181 (222)
Q Consensus       129 ~~------~~-~~~~~fD~ii~~pp~~--~~~-----------~~~~~~-l~~l~~~~~v~~~~~~~~~~~~~~  181 (222)
                      ..      +. ...+.||+|++|++..  +..           ..+++. ...|+|+|.+++..........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~  149 (191)
T 3dou_A           76 IFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFI  149 (191)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHH
T ss_pred             HHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHH
Confidence            11      00 0002799999998532  210           122222 234899999887664333333333

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.18  E-value=6.8e-10  Score=90.97  Aligned_cols=104  Identities=11%  Similarity=0.046  Sum_probs=68.9

Q ss_pred             CCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHc-----------------CC-------------C
Q 043853           67 GSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLN-----------------NI-------------S  115 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~-----------------~~-------------~  115 (222)
                      ++.+|||+|||+|.....++. .+.+|+|+|+|+.|++.|+++++..                 +.             .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            478999999999996655544 3669999999999999999865421                 10             0


Q ss_pred             cEEEEeCchhc-hhhhc-CCCCCCCcEEEECCCC----CC--ccHHHHHHHHh-CCCCcEEEEe
Q 043853          116 NATFVQGDLNK-IGGDF-GNAFPKPDIVISDPNR----PG--MHMKLIKFLLK-LKAPRIVYVS  170 (222)
Q Consensus       116 ~v~~~~~d~~~-~~~~~-~~~~~~fD~ii~~pp~----~~--~~~~~~~~l~~-l~~~~~v~~~  170 (222)
                      .++++.+|+.+ .+... ..+.+.||+|+++...    ..  -...++..+.+ |+|+|.+++.
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            15678889877 32110 1112469999998631    11  12344444443 7899998875

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.18  E-value=5.8e-10  Score=88.96  Aligned_cols=140  Identities=16%  Similarity=0.109  Sum_probs=86.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEE-eCchhchh-hhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFV-QGDLNKIG-GDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~-~~d~~~~~-~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++..     ++... ..++.... ..+.  ...||.+.+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~d~~~~  109 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE-----RVVVMEQFNFRNAVLADFE--QGRPSFTSI  109 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT-----TEEEECSCCGGGCCGGGCC--SCCCSEEEE
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc-----cccccccceEEEeCHhHcC--cCCCCEEEE
Confidence            46799999999999999888876 499999999999999877532     23222 22332221 1111  113566666


Q ss_pred             CCCCCCccHHHHHHH-HhCCCCcEEEEeeCccc---------------------hHhhHHHhhccCCCCccCCCeEEeEe
Q 043853          144 DPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPAT---------------------CARDLDYLCHGVGDQNIKGCYKLKSL  201 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~~~~~~~  201 (222)
                      |.....+ ..++..+ +.++|+|.+++...+..                     ...++..+++       +.||++..+
T Consensus       110 D~v~~~l-~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~-------~aGf~v~~~  181 (232)
T 3opn_A          110 DVSFISL-DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTAT-------QLGFSVKGL  181 (232)
T ss_dssp             CCSSSCG-GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHH-------HHTEEEEEE
T ss_pred             EEEhhhH-HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHH-------HCCCEEEEE
Confidence            6654444 3444444 45899998887643211                     0112222222       568998887


Q ss_pred             eeeccCCCCCceeEEEEEEe
Q 043853          202 QPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       202 ~~~~~~p~~~~~~~v~~~~~  221 (222)
                      ......-....++-++.++|
T Consensus       182 ~~~pi~g~~gn~e~l~~~~~  201 (232)
T 3opn_A          182 TFSPIKGGAGNVEFLVHLLK  201 (232)
T ss_dssp             EECSSCBTTTBCCEEEEEEE
T ss_pred             EEccCCCCCCCHHHHHHHhh
Confidence            76554444556777776665

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.16  E-value=3.4e-10  Score=88.99  Aligned_cols=89  Identities=15%  Similarity=0.062  Sum_probs=68.3

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|.++..+++.    +|+|+|+.+++.++++       +++++.+|+.+.+.    +.+.||+|++....
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~~~fD~v~~~~~l  112 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-------GVFVLKGTAENLPL----KDESFDFALMVTTI  112 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS----CTTCEEEEEEESCG
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-------CCEEEEcccccCCC----CCCCeeEEEEcchH
Confidence            679999999999999988765    9999999999999986       47899999877642    22479999987541


Q ss_pred             --CCccHHHHHHHH-hCCCCcEEEEee
Q 043853          148 --PGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       148 --~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                        ..-...+++.+. .++|+|.++++.
T Consensus       113 ~~~~~~~~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          113 CFVDDPERALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             GGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence              111245555554 478999888765

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.16  E-value=1.7e-09  Score=91.72  Aligned_cols=99  Identities=17%  Similarity=0.101  Sum_probs=75.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.++..+++..  .+++++|+ +.+++.|++++...++. +++++.+|+.+...      ..||+|++
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~D~v~~  254 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP------VTADVVLL  254 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS------CCEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC------CCCCEEEE
Confidence            46899999999999999998864  48999999 99999999999998886 59999999976221      24999998


Q ss_pred             CCCCCCcc----HHHHHHHHh-CCCCcEEEEeeC
Q 043853          144 DPNRPGMH----MKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       144 ~pp~~~~~----~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      ........    ..+++.+.+ ++|+|.+++...
T Consensus       255 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          255 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            75421111    245555543 789997776543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.15  E-value=7.1e-10  Score=83.28  Aligned_cols=95  Identities=16%  Similarity=0.092  Sum_probs=68.6

Q ss_pred             CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh-----h-cCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG-----D-FGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~-----~-~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.   ..+++|+|+++ +++.          .++++.++|+.+...     . +  +.+.
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~--~~~~   88 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV--GDSK   88 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH--TTCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC--CCCc
Confidence            4779999999999999988876   25999999998 6532          468999999987641     0 1  1247


Q ss_pred             CcEEEECCCCCCc--c-----------HHHHHHH-HhCCCCcEEEEeeCcc
Q 043853          138 PDIVISDPNRPGM--H-----------MKLIKFL-LKLKAPRIVYVSCNPA  174 (222)
Q Consensus       138 fD~ii~~pp~~~~--~-----------~~~~~~l-~~l~~~~~v~~~~~~~  174 (222)
                      ||+|++++|....  .           ..+++.+ +.++++|.+++.....
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            9999999874321  1           3444444 3478999988766433

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.14  E-value=7.1e-11  Score=95.39  Aligned_cols=91  Identities=10%  Similarity=-0.039  Sum_probs=66.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCe--EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF  131 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~--v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  131 (222)
                      .+.+.+.+...  ++.+|||+|||+|.++. +++ +.+  ++|+|+|+.+++.+++++...  ++++++++|+.++...-
T Consensus        10 ~~~iv~~~~~~--~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~   83 (252)
T 1qyr_A           10 IDSIVSAINPQ--KGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             HHHHHHHHCCC--TTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHH
T ss_pred             HHHHHHhcCCC--CcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHH
Confidence            34444444433  37799999999999999 765 567  999999999999999887542  47999999998864321


Q ss_pred             CCC-CCCCcEEEECCCCCCc
Q 043853          132 GNA-FPKPDIVISDPNRPGM  150 (222)
Q Consensus       132 ~~~-~~~fD~ii~~pp~~~~  150 (222)
                      ..+ .+..+.|++|+|+...
T Consensus        84 ~~~~~~~~~~vvsNlPY~i~  103 (252)
T 1qyr_A           84 LAEKMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             HHHHHTSCEEEEEECCTTTH
T ss_pred             hhcccCCceEEEECCCCCcc
Confidence            000 0145899999997643

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.12  E-value=4e-10  Score=88.50  Aligned_cols=96  Identities=22%  Similarity=0.246  Sum_probs=71.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.++++.       .++..+|+.+....+  +.+.||+|+++..
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~--~~~~fD~v~~~~~  102 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPY--EEEQFDCVIFGDV  102 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCS--CTTCEEEEEEESC
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCC--CCCccCEEEECCh
Confidence            5789999999999999999877779999999999999998753       378889987643222  2257999998753


Q ss_pred             C--CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          147 R--PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       147 ~--~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .  ..-...+++.+.+ ++++|.++++.
T Consensus       103 l~~~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A          103 LEHLFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             GGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            1  1112455555544 78999888765

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.12  E-value=4.5e-09  Score=89.28  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.|++++...++. ++++..+|+.+...      ..||+|++
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p------~~~D~v~~  274 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIP------DGADVYLI  274 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC------SSCSEEEE
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCC------CCceEEEh
Confidence            468999999999999999988754  8999999 99999999999988874 59999999973211      26999988


Q ss_pred             CCCCCCcc-H---HHHHHHHh-CCCCcEEEEee
Q 043853          144 DPNRPGMH-M---KLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~-~---~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .-...... .   .+++.+.+ ++|+|.+++..
T Consensus       275 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          275 KHVLHDWDDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             hhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            65311111 1   45555544 78999887644

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.12  E-value=2e-09  Score=88.42  Aligned_cols=98  Identities=15%  Similarity=0.010  Sum_probs=67.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEE-EEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||||.++..+++.+ .+|+|+|+|+.|++.+.++     .+++. +...|+..+..... +...||+++++
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~-----~~rv~~~~~~ni~~l~~~~l-~~~~fD~v~~d  158 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ-----DDRVRSMEQYNFRYAEPVDF-TEGLPSFASID  158 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT-----CTTEEEECSCCGGGCCGGGC-TTCCCSEEEEC
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CcccceecccCceecchhhC-CCCCCCEEEEE
Confidence            46799999999999999888764 5999999999999986443     12333 33455544432211 12249999998


Q ss_pred             CCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          145 PNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       145 pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      .....+..-+.+..+.++|+|.+++.
T Consensus       159 ~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          159 VSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             eeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            76555533333344558999988766

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.11  E-value=6.7e-10  Score=89.89  Aligned_cols=93  Identities=20%  Similarity=0.188  Sum_probs=71.9

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|+++.     .++.+..+|+.+++.    ..+.||+|++.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----~~~~fD~v~~~  155 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF----SDTSMDAIIRI  155 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB----CTTCEEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC----CCCceeEEEEe
Confidence            4679999999999999999876  569999999999999998874     358899999977643    12479999987


Q ss_pred             CCCCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853          145 PNRPGMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       145 pp~~~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      ....    .+.+..+.++|+|.+++...
T Consensus       156 ~~~~----~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          156 YAPC----KAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             SCCC----CHHHHHHHEEEEEEEEEEEE
T ss_pred             CChh----hHHHHHHhcCCCcEEEEEEc
Confidence            5422    13333445789998877664

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.10  E-value=3.7e-09  Score=89.35  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=75.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ +.+++.|+++++..++++ ++++.+|+.+.+.      ..+|+|++
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~D~v~~  262 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY------PEADAVLF  262 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC------CCCSEEEE
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC------CCCCEEEE
Confidence            478999999999999999988754  9999999 999999999999988865 9999999987532      23599988


Q ss_pred             CCCCCCc----cHHHHHHHHh-CCCCcEEEEee
Q 043853          144 DPNRPGM----HMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~----~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .......    ...+++.+.+ ++|+|.+++..
T Consensus       263 ~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          263 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             echhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6542111    2344555544 78998886543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.08  E-value=2.1e-10  Score=93.20  Aligned_cols=95  Identities=15%  Similarity=-0.015  Sum_probs=74.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH----cCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL----NNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~----~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      +..+|||+|||+|.++..+++...+++++|+|+.+++.|++++..    ...++++++.+|+.++.       ++||+|+
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-------~~fD~Ii  144 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-------KKYDLIF  144 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-------CCEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-------hhCCEEE
Confidence            457999999999999998776546999999999999999987643    12346999999998865       3799999


Q ss_pred             ECCCCCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          143 SDPNRPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ++.+..   ..+.+.+. .|+|+|++.+..
T Consensus       145 ~d~~dp---~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          145 CLQEPD---IHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             ESSCCC---HHHHHHHHTTEEEEEEEEEEE
T ss_pred             ECCCCh---HHHHHHHHHhcCCCcEEEEEc
Confidence            997532   23555554 489999988754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.08  E-value=1.4e-11  Score=98.95  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=69.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      +.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++.  ..++++++++|+.++...   .
T Consensus        19 ~~i~~~~~~~--~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~---~   91 (245)
T 1yub_A           19 NQIIKQLNLK--ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP---N   91 (245)
T ss_dssp             HHHHHHCCCC--SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC---C
T ss_pred             HHHHHhcCCC--CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc---c
Confidence            3444554433  47899999999999999999888899999999999999998875  335699999999887532   1


Q ss_pred             CCCCcEEEECCCCCCc
Q 043853          135 FPKPDIVISDPNRPGM  150 (222)
Q Consensus       135 ~~~fD~ii~~pp~~~~  150 (222)
                      .+.| .|++|||+...
T Consensus        92 ~~~f-~vv~n~Py~~~  106 (245)
T 1yub_A           92 KQRY-KIVGNIPYHLS  106 (245)
T ss_dssp             SSEE-EEEEECCSSSC
T ss_pred             CCCc-EEEEeCCcccc
Confidence            1367 89999997654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.06  E-value=5.6e-09  Score=85.24  Aligned_cols=102  Identities=11%  Similarity=0.028  Sum_probs=73.5

Q ss_pred             CCeEEEEeccc---chhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh-------cCCCC
Q 043853           68 SEIVLDLFCGT---GTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD-------FGNAF  135 (222)
Q Consensus        68 ~~~vlDlg~G~---G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~-------~~~~~  135 (222)
                      ..+|||+|||+   |.++..+++.  ..+|+++|+||.|++.|++++..  .++++++++|+.+....       ..-+.
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            47999999999   9887666554  35999999999999999998843  24699999999764211       00112


Q ss_pred             CCCcEEEECCC-----CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          136 PKPDIVISDPN-----RPGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       136 ~~fD~ii~~pp-----~~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      +.||+|++..-     .. ....++..+.+ ++|+|.++++..
T Consensus       156 ~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             TSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence            37999998752     22 23556666554 899999887763

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.06  E-value=7.3e-10  Score=89.06  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=73.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|||+|||+|.+++.++...  .+++++|+|+.+++.+++|+..+|++ .++...|...-...     ..||++++.
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p~-----~~~DvaL~l  205 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRLD-----EPADVTLLL  205 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCCC-----SCCSEEEET
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCCC-----CCcchHHHH
Confidence            36799999999999999887653  49999999999999999999999986 88999988665432     589999997


Q ss_pred             CC-------CCCccHHHHHHHHhCCCCcEEE
Q 043853          145 PN-------RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       145 pp-------~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      -.       +.+   ...+.+..++++++++
T Consensus       206 kti~~Le~q~kg---~g~~ll~aL~~~~vvV  233 (281)
T 3lcv_B          206 KTLPCLETQQRG---SGWEVIDIVNSPNIVV  233 (281)
T ss_dssp             TCHHHHHHHSTT---HHHHHHHHSSCSEEEE
T ss_pred             HHHHHhhhhhhH---HHHHHHHHhCCCCEEE
Confidence            53       222   2225666678888766

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.02  E-value=1.3e-09  Score=91.93  Aligned_cols=98  Identities=18%  Similarity=0.167  Sum_probs=74.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++.+|||+|||+|.++..+++..+  +++++|+ +.+++.|++++...+++ +++++.+|+.+...      ..||+|++
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~D~v~~  255 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP------RKADAIIL  255 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS------SCEEEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC------CCccEEEE
Confidence            468999999999999999987653  8999999 99999999999998886 59999999976321      24999988


Q ss_pred             CCCCCCcc----HHHHHHHHh-CCCCcEEEEee
Q 043853          144 DPNRPGMH----MKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~----~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ........    ..+++.+.. ++|+|.+++..
T Consensus       256 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          256 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  288 (360)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            65421111    245555544 78998877653

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.02  E-value=1.1e-09  Score=91.29  Aligned_cols=99  Identities=18%  Similarity=0.245  Sum_probs=74.9

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++.  ..+++++|++ .+++.|++++...++++ ++++.+|+.+...  .   +.||+|++
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~---~~~D~v~~  238 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY--G---NDYDLVLL  238 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC--C---SCEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC--C---CCCcEEEE
Confidence            4689999999999999999876  4599999999 99999999999888864 9999999987532  1   24999998


Q ss_pred             CCCCCCc----cHHHHHHHHh-CCCCcEEEEee
Q 043853          144 DPNRPGM----HMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~----~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .-.-...    ...+++.+.+ ++|+|.+++..
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            5431111    1344444433 78888776544

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.02  E-value=3.7e-09  Score=88.36  Aligned_cols=98  Identities=14%  Similarity=0.028  Sum_probs=74.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.|++++...++. ++++..+|+.+..     + ..||+|++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----p-~~~D~v~~  241 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL-----P-AGAGGYVL  241 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----C-CSCSEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC-----C-CCCcEEEE
Confidence            467999999999999999987643  8999999 99999999999988874 5999999997421     1 26999988


Q ss_pred             CCCCCCc----cHHHHHHHHh-CCCCcEEEEee
Q 043853          144 DPNRPGM----HMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~----~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .-.-...    ...+++.+.+ ++|+|.+++..
T Consensus       242 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          242 SAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             ehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6431111    1344454433 78999887654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.02  E-value=3.1e-09  Score=90.06  Aligned_cols=101  Identities=14%  Similarity=0.053  Sum_probs=75.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++..  .+++++|+ |.+++.|++++...++. +++++.+|+.+....+.   +.||+|++
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p---~~~D~v~~  254 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP---TGFDAVWM  254 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC---CCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC---CCcCEEEE
Confidence            46799999999999999998754  48999999 99999999999888774 59999999987420111   37999988


Q ss_pred             CCCCCCcc----HHHHHHHH-hCCCCcEEEEee
Q 043853          144 DPNRPGMH----MKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~----~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      .-.-....    ..+++.+. .++|+|.+++..
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            64321111    23444443 489999887644

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.01  E-value=2.8e-09  Score=84.78  Aligned_cols=92  Identities=20%  Similarity=0.249  Sum_probs=72.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      +..+|||+|||+|.+++.+. ....++|+|+|+.+++.+++++..++. +..+..+|....+..     ..||++++.-.
T Consensus       105 ~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~-----~~~DvvLllk~  177 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPA-----EAGDLALIFKL  177 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCC-----CBCSEEEEESC
T ss_pred             CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCC-----CCcchHHHHHH
Confidence            46799999999999999887 566999999999999999999998885 589999999765532     47999988731


Q ss_pred             -------CCCccHHHHHHHHhCCCCcEEE
Q 043853          147 -------RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       147 -------~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                             ..+   ...+.+..++++++++
T Consensus       178 lh~LE~q~~~---~~~~ll~aL~~~~vvV  203 (253)
T 3frh_A          178 LPLLEREQAG---SAMALLQSLNTPRMAV  203 (253)
T ss_dssp             HHHHHHHSTT---HHHHHHHHCBCSEEEE
T ss_pred             HHHhhhhchh---hHHHHHHHhcCCCEEE
Confidence                   222   2235555678887665

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.01  E-value=1.5e-09  Score=89.12  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             CCCeEEEEecccchhHHHH----hhcC--Ce--EEEEeCCHHHHHHHHHHHHHc-CCCcE--EEEeCchhchhhhcC--C
Q 043853           67 GSEIVLDLFCGTGTIGLTL----ARWV--KH--VYGYEVVPQAISDACRNAKLN-NISNA--TFVQGDLNKIGGDFG--N  133 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~l----a~~~--~~--v~gvD~~~~~i~~a~~n~~~~-~~~~v--~~~~~d~~~~~~~~~--~  133 (222)
                      ++.+|||+|||+|.++..+    +...  ..  ++|+|.|+.|++.|++++... +++++  .+..+++.++...+.  -
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            4679999999999876532    2222  33  399999999999999998754 55554  556777766542110  0


Q ss_pred             CCCCCcEEEECCC---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          134 AFPKPDIVISDPN---RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       134 ~~~~fD~ii~~pp---~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      +.+.||+|++.-.   ..+. ..++..+.+ |+|+|.+++..
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~-~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDI-PATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCH-HHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCceeEEEEeeeeeecCCH-HHHHHHHHHHcCCCcEEEEEE
Confidence            1257999998753   2232 455555544 79999887653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.99  E-value=1e-08  Score=79.13  Aligned_cols=93  Identities=23%  Similarity=0.322  Sum_probs=64.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcC----CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh-------------
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV----KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG-------------  129 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~----~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~-------------  129 (222)
                      ++.+|||+|||+|.++..+++..    .+++|+|+|+.+           ..++++++++|+.+...             
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccccc
Confidence            46899999999999999998753    589999999831           23568999999977540             


Q ss_pred             ----------hcCCCCCCCcEEEECCCCC--Cc---cH--------HHHHHH-HhCCCCcEEEEeeC
Q 043853          130 ----------DFGNAFPKPDIVISDPNRP--GM---HM--------KLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       130 ----------~~~~~~~~fD~ii~~pp~~--~~---~~--------~~~~~l-~~l~~~~~v~~~~~  172 (222)
                                .+  +...||+|+++++..  +.   ..        .++..+ +.++|+|.+++...
T Consensus        91 ~~~~~~~~~~~~--~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A           91 NNSVDYKLKEIL--QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             -CHHHHHHHHHH--TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhHHHHHhhc--CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence                      01  124799999987522  11   10        123333 34789999887553

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.97  E-value=2e-09  Score=90.65  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=75.9

Q ss_pred             CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ..+|||+|||+|.++..+++..  .+++++|+ +.+++.|++++...++.+ ++++.+|+.+......   ..||+|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG---GAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT---CCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC---CCccEEEEe
Confidence            6899999999999999998864  48999999 889999999999888764 9999999987642111   369999986


Q ss_pred             CCCCCcc----HHHHHHHHh-CCCCcEEEEee
Q 043853          145 PNRPGMH----MKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~~~~----~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..-....    ..+++.+.+ ++|+|.+++..
T Consensus       256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          256 DCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            5321111    345555543 78988887644

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.96  E-value=6.3e-10  Score=90.41  Aligned_cols=98  Identities=10%  Similarity=0.030  Sum_probs=78.1

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +..+||+++|||.+++.+...+.+++.+|.++..++..++|++.  .+++++++.|.......+..+..+||+|++|||+
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY  169 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY  169 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred             CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence            45789999999999997776668999999999999999999864  3469999999988766544444579999999997


Q ss_pred             C--CccHHHHHHHHh---CCCCcEE
Q 043853          148 P--GMHMKLIKFLLK---LKAPRIV  167 (222)
Q Consensus       148 ~--~~~~~~~~~l~~---l~~~~~v  167 (222)
                      .  +....+++.+..   ..+.|++
T Consensus       170 e~k~~~~~vl~~L~~~~~r~~~Gi~  194 (283)
T 2oo3_A          170 ERKEEYKEIPYAIKNAYSKFSTGLY  194 (283)
T ss_dssp             CSTTHHHHHHHHHHHHHHHCTTSEE
T ss_pred             CCCcHHHHHHHHHHHhCccCCCeEE
Confidence            5  466677766654   3566654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.95  E-value=1e-08  Score=79.82  Aligned_cols=113  Identities=16%  Similarity=0.142  Sum_probs=80.5

Q ss_pred             CCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEeCchhch--------------hh
Q 043853           68 SEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNI---SNATFVQGDLNKI--------------GG  129 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~---~~v~~~~~d~~~~--------------~~  129 (222)
                      .++|||+||  |+-++.+|+. ..+|+++|.+++..+.|+++++..|+   ++++++.+|+.+.              ..
T Consensus        31 a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~  108 (202)
T 3cvo_A           31 AEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP  108 (202)
T ss_dssp             CSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred             CCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence            679999998  5777788875 57999999999999999999999996   4599999997543              11


Q ss_pred             hc------CCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEee-CccchHhhHHHhh
Q 043853          130 DF------GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC-NPATCARDLDYLC  184 (222)
Q Consensus       130 ~~------~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~-~~~~~~~~~~~l~  184 (222)
                      .+      .....+||+||+|-...  ...+...+..++++|++++.- -.......+..+.
T Consensus       109 ~~~~~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~  168 (202)
T 3cvo_A          109 DYPLAVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDDYSQRRWQHQVEEFL  168 (202)
T ss_dssp             HHHHGGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHH
T ss_pred             HHhhhhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHH
Confidence            10      01125799999997533  244555667789999886543 1333344455554

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.94  E-value=1.6e-09  Score=93.35  Aligned_cols=96  Identities=10%  Similarity=0.131  Sum_probs=69.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcE--EEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA--TFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v--~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++    +++..  .+...+...++..    .+.||+|++.
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~----~~~fD~I~~~  178 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT----EGPANVIYAA  178 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH----HCCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC----CCCEEEEEEC
Confidence            478999999999999999998888999999999999999876    44321  1223444444321    2479999987


Q ss_pred             CC---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          145 PN---RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       145 pp---~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      -.   ... ...+++.+.+ ++|+|.++++.
T Consensus       179 ~vl~h~~d-~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          179 NTLCHIPY-VQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             SCGGGCTT-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChHHhcCC-HHHHHHHHHHHcCCCeEEEEEe
Confidence            53   122 3455555544 79999998865

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.94  E-value=3.3e-09  Score=86.59  Aligned_cols=101  Identities=14%  Similarity=0.139  Sum_probs=68.6

Q ss_pred             CCeEEEEecccch----hHHHHhhc-C-----CeEEEEeCCHHHHHHHHHHHHH-----------------------cC-
Q 043853           68 SEIVLDLFCGTGT----IGLTLARW-V-----KHVYGYEVVPQAISDACRNAKL-----------------------NN-  113 (222)
Q Consensus        68 ~~~vlDlg~G~G~----~~~~la~~-~-----~~v~gvD~~~~~i~~a~~n~~~-----------------------~~-  113 (222)
                      ..+|||+|||||.    +++.+++. .     .+|+|+|+|+.|++.|++++..                       .+ 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            5799999999998    55556553 2     3899999999999999997510                       01 


Q ss_pred             --C-----CcEEEEeCchhchhhhcCCCCCCCcEEEECCCC----CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          114 --I-----SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR----PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       114 --~-----~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~----~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                        +     ++++|.++|+.+.+..   ..+.||+|+|.--.    ......++..+.. |+|+|++++..
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~---~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYN---VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCC---CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             eeechhhcccCeEEecccCCCCCC---cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence              0     2489999999874221   12479999994320    0112344554443 79999998754

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.93  E-value=3.5e-09  Score=77.46  Aligned_cols=106  Identities=13%  Similarity=0.154  Sum_probs=79.2

Q ss_pred             CCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccc-hhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853           39 ANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG-TIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN  116 (222)
Q Consensus        39 ~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G-~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~  116 (222)
                      .++..+....+.+.+.+++.+..    .++.+|||+|||.| ..+..|++ .+..|+++|++|.+++             
T Consensus        11 ~~~~~~~~~~m~e~LaeYI~~~~----~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------------   73 (153)
T 2k4m_A           11 SSGLVPRGSHMWNDLAVYIIRCS----GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------------   73 (153)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHS----CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------------
T ss_pred             cCCcccchhhHHHHHHHHHHhcC----CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------------
Confidence            45566666678888888887765    23569999999999 59999997 6779999999998877             


Q ss_pred             EEEEeCchhchhhhcCCCCCCCcEE-EECCCCCCccHHHHHHHHhCCCCcEE
Q 043853          117 ATFVQGDLNKIGGDFGNAFPKPDIV-ISDPNRPGMHMKLIKFLLKLKAPRIV  167 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~~~~~fD~i-i~~pp~~~~~~~~~~~l~~l~~~~~v  167 (222)
                        +++.|+++.....-   ..||+| -++|| .++++.+++..+.....-++
T Consensus        74 --~v~dDiF~P~~~~Y---~~~DLIYsirPP-~El~~~i~~lA~~v~adliI  119 (153)
T 2k4m_A           74 --IVRDDITSPRMEIY---RGAALIYSIRPP-AEIHSSLMRVADAVGARLII  119 (153)
T ss_dssp             --EECCCSSSCCHHHH---TTEEEEEEESCC-TTTHHHHHHHHHHHTCEEEE
T ss_pred             --eEEccCCCCccccc---CCcCEEEEcCCC-HHHHHHHHHHHHHcCCCEEE
Confidence              88899987544321   279999 77777 46777777777665543333

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.92  E-value=2.2e-08  Score=76.86  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-----------CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEE-eCchhchhhh----
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-----------KHVYGYEVVPQAISDACRNAKLNNISNATFV-QGDLNKIGGD----  130 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-----------~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~-~~d~~~~~~~----  130 (222)
                      ++.+|||+|||+|.++..+++..           .+++|+|+|+.+           ..++++++ .+|+.+....    
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHHH
Confidence            47899999999999999998763           689999999831           23568899 9998664321    


Q ss_pred             -cCCCCCCCcEEEECCCCC--Ccc-----------HHHHHH-HHhCCCCcEEEEeeCc
Q 043853          131 -FGNAFPKPDIVISDPNRP--GMH-----------MKLIKF-LLKLKAPRIVYVSCNP  173 (222)
Q Consensus       131 -~~~~~~~fD~ii~~pp~~--~~~-----------~~~~~~-l~~l~~~~~v~~~~~~  173 (222)
                       .. +...||+|+++++..  +..           ..+++. .+.++|+|.+++....
T Consensus        91 ~~~-~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           91 EVL-PGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             HHS-GGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             Hhc-CCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence             00 113799999987422  111           133333 3448999998877543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.89  E-value=6e-09  Score=87.01  Aligned_cols=96  Identities=14%  Similarity=0.066  Sum_probs=73.0

Q ss_pred             CeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           69 EIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .+|||+|||+|..+..+++..  .+++++|+ +.+++.|++++...++. +++++.+|+.+. .  .   ..||+|++..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~---~~~D~v~~~~  241 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE-V--P---SNGDIYLLSR  241 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC-C--C---SSCSEEEEES
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC-C--C---CCCCEEEEch
Confidence            799999999999999998764  48999999 99999999998877654 599999999772 1  1   3699999865


Q ss_pred             CCCCc-c---HHHHHHHH-hCCCCcEEEEee
Q 043853          146 NRPGM-H---MKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       146 p~~~~-~---~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ..... .   ..+++.+. .++|+|.+++..
T Consensus       242 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            42111 1   24445443 389999887664

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.89  E-value=2.4e-08  Score=84.10  Aligned_cols=130  Identities=16%  Similarity=0.206  Sum_probs=89.3

Q ss_pred             CCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ..+++|++||.|++++.+...+   ..+.++|+++.+++..+.|..     +..++++|+.++...... ...+|+++.+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~-~~~~D~l~~g   75 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFD-RLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHH-HHCCSEEEEC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcC-cCCcCEEEEc
Confidence            3589999999999999888765   379999999999999999964     345788999887532110 0159999999


Q ss_pred             CCC----------------CCccHHHHHHHHhCC--CCcEEE--Eee--CccchHhhHHHhhccCCCCccCCCeEEeE--
Q 043853          145 PNR----------------PGMHMKLIKFLLKLK--APRIVY--VSC--NPATCARDLDYLCHGVGDQNIKGCYKLKS--  200 (222)
Q Consensus       145 pp~----------------~~~~~~~~~~l~~l~--~~~~v~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--  200 (222)
                      ||+                ..+..++++.+..++  |.-+++  +.+  +..++...++.|.        +.||.+..  
T Consensus        76 pPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~--------~~GY~v~~~v  147 (343)
T 1g55_A           76 PPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIE--------NCGFQYQEFL  147 (343)
T ss_dssp             CC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHH--------HTTEEEEEEE
T ss_pred             CCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHH--------HCCCeeEEEE
Confidence            992                234456667777777  877777  333  2334444555554        56777665  


Q ss_pred             eeeecc-CCCCC
Q 043853          201 LQPVDM-FPHTP  211 (222)
Q Consensus       201 ~~~~~~-~p~~~  211 (222)
                      +...++ .|++=
T Consensus       148 l~a~~~GvPQ~R  159 (343)
T 1g55_A          148 LSPTSLGIPNSR  159 (343)
T ss_dssp             ECGGGGTCSCCC
T ss_pred             EEHHHCCCCCcc
Confidence            444455 66554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.84  E-value=1.8e-08  Score=85.15  Aligned_cols=82  Identities=20%  Similarity=0.077  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEeCchhchhhhcCCCCC
Q 043853           65 DDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNI------SNATFVQGDLNKIGGDFGNAFP  136 (222)
Q Consensus        65 ~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~  136 (222)
                      +.++.+|||++||.|+-+..++....  .++++|+|+.-++.+++|++..+.      .++.+...|...+....   .+
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~---~~  222 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE---GD  222 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS---TT
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc---cc
Confidence            34589999999999999998887654  799999999999999999998765      35899999998876432   24


Q ss_pred             CCcEEEECCCCCC
Q 043853          137 KPDIVISDPNRPG  149 (222)
Q Consensus       137 ~fD~ii~~pp~~~  149 (222)
                      .||.|++|+|.++
T Consensus       223 ~fD~VLlDaPCSg  235 (359)
T 4fzv_A          223 TYDRVLVDVPCTT  235 (359)
T ss_dssp             CEEEEEEECCCCC
T ss_pred             cCCEEEECCccCC
Confidence            7999999999654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.84  E-value=1.6e-09  Score=88.58  Aligned_cols=97  Identities=16%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH-HcCCC-cEEEE--eCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK-LNNIS-NATFV--QGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~-~~~~~-~v~~~--~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++.. ..... +++++  ++|+.+++      .+.||+|+
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~------~~~fD~Vv  153 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME------PFQADTVL  153 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC------CCCCSEEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC------CCCcCEEE
Confidence            4789999999999999999887 7999999998 5433322110 00111 58899  99998854      24799999


Q ss_pred             ECCCCCCcc-----H---HHHHHH-HhCCCCc--EEEEee
Q 043853          143 SDPNRPGMH-----M---KLIKFL-LKLKAPR--IVYVSC  171 (222)
Q Consensus       143 ~~pp~~~~~-----~---~~~~~l-~~l~~~~--~v~~~~  171 (222)
                      ++.......     .   .+++.+ +.++|+|  .+++..
T Consensus       154 sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          154 CDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             ECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             ECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            987511101     0   234444 3478888  666544

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.82  E-value=1.6e-09  Score=88.00  Aligned_cols=97  Identities=16%  Similarity=0.183  Sum_probs=64.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH-cCCC-cEEEE--eCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL-NNIS-NATFV--QGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~-~~~~-~v~~~--~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .... +++++  ++|+.+++      ...||+|+
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~------~~~fD~V~  145 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP------VERTDVIM  145 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC------CCCCSEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC------CCCCcEEE
Confidence            4789999999999999999887 8999999998 53333221000 0011 58888  99998754      14799999


Q ss_pred             ECCCCC-Ccc----H---HHHHHH-HhCCCCc--EEEEee
Q 043853          143 SDPNRP-GMH----M---KLIKFL-LKLKAPR--IVYVSC  171 (222)
Q Consensus       143 ~~pp~~-~~~----~---~~~~~l-~~l~~~~--~v~~~~  171 (222)
                      ++.... +..    .   .+++.+ +.++|+|  .+++..
T Consensus       146 sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          146 CDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             ECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            987511 110    1   134444 3478999  776654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.79  E-value=4.1e-08  Score=79.79  Aligned_cols=104  Identities=12%  Similarity=0.001  Sum_probs=68.0

Q ss_pred             CCeEEEEeccc--chhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCC--CCCCc-
Q 043853           68 SEIVLDLFCGT--GTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPD-  139 (222)
Q Consensus        68 ~~~vlDlg~G~--G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~fD-  139 (222)
                      ..+|||+|||+  +..+..+++.   ..+|+++|.||.|++.|+.++...+..+++++++|+.+...-+..+  ...|| 
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence            46899999997  4455555442   3599999999999999999886544346999999998863211100  01233 


Q ss_pred             ----EEEECCC--C-CCc--cHHHHHHH-HhCCCCcEEEEee
Q 043853          140 ----IVISDPN--R-PGM--HMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       140 ----~ii~~pp--~-~~~--~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                          .|+++.-  + ...  ...++..+ ..++||+.+.++.
T Consensus       159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence                4666542  1 111  13455555 4489999988774

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.78  E-value=3.5e-09  Score=87.77  Aligned_cols=96  Identities=17%  Similarity=0.115  Sum_probs=65.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeC----CHHHHHHHHHHHHHcCCCcEEEEeC-chhchhhhcCCCCCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEV----VPQAISDACRNAKLNNISNATFVQG-DLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~----~~~~i~~a~~n~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~fD~i  141 (222)
                      ++.+|||+|||+|.++..+++. .+|+|+|+    ++.+++.+.  ++..+.++++++++ |+.+++.      ..||+|
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~~------~~fD~V  152 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIPP------ERCDTL  152 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSCC------CCCSEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCCc------CCCCEE
Confidence            4789999999999999999987 68999999    554432211  11112246999999 8876532      479999


Q ss_pred             EECCCCC-Ccc----H---HHHHHH-HhCCCCcEEEEee
Q 043853          142 ISDPNRP-GMH----M---KLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~-~~~----~---~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +++.+.. +..    .   .++..+ +.|+|+|.+.+..
T Consensus       153 ~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          153 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            9986532 111    1   233333 4589999877654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.77  E-value=2.4e-08  Score=77.88  Aligned_cols=107  Identities=14%  Similarity=0.105  Sum_probs=72.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..++   .+++|+|+|+.               ++++.++|+.+.+.    +.+.||+|++...
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~---------------~~~~~~~d~~~~~~----~~~~fD~v~~~~~  124 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR---NPVHCFDLASL---------------DPRVTVCDMAQVPL----EDESVDVAVFCLS  124 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC---SCEEEEESSCS---------------STTEEESCTTSCSC----CTTCEEEEEEESC
T ss_pred             CCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC---------------CceEEEeccccCCC----CCCCEeEEEEehh
Confidence            46799999999999998774   68999999987               35688899877542    2247999998764


Q ss_pred             CC-CccHHHHHHHH-hCCCCcEEEEeeCccc--hHhhHHHhhccCCCCccCCCeEEeEee
Q 043853          147 RP-GMHMKLIKFLL-KLKAPRIVYVSCNPAT--CARDLDYLCHGVGDQNIKGCYKLKSLQ  202 (222)
Q Consensus       147 ~~-~~~~~~~~~l~-~l~~~~~v~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~  202 (222)
                      .. .-...+++.+. .++|+|.+++......  ...++..+.+       ..||++....
T Consensus       125 l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~-------~~Gf~~~~~~  177 (215)
T 2zfu_A          125 LMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVT-------KLGFKIVSKD  177 (215)
T ss_dssp             CCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHH-------HTTEEEEEEE
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHH-------HCCCEEEEEe
Confidence            21 22245555544 4789999887653321  2233443332       5678777643

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.76  E-value=6e-08  Score=82.58  Aligned_cols=95  Identities=23%  Similarity=0.258  Sum_probs=72.2

Q ss_pred             CeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC----CCCCCCcEEEE
Q 043853           69 EIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG----NAFPKPDIVIS  143 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~----~~~~~fD~ii~  143 (222)
                      .+++|++||.|++++.+.+.+. .+.++|+++.+++..+.|.     ++..++++|+.++.....    .....+|+|+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g   77 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG   77 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence            4799999999999998877655 6779999999999999885     357888999988743211    01247999999


Q ss_pred             CCCCCC---------------ccHHHHHHHHhCCCCcEEE
Q 043853          144 DPNRPG---------------MHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       144 ~pp~~~---------------~~~~~~~~l~~l~~~~~v~  168 (222)
                      +||+.+               +...+++.+..++|.-+++
T Consensus        78 gpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~  117 (376)
T 3g7u_A           78 GPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLA  117 (376)
T ss_dssp             CCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             cCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEE
Confidence            999432               3455666777788887777

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.71  E-value=8.5e-08  Score=86.63  Aligned_cols=100  Identities=22%  Similarity=0.257  Sum_probs=70.7

Q ss_pred             CCeEEEEecccchhHH---HHhhc-C-----------CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhc
Q 043853           68 SEIVLDLFCGTGTIGL---TLARW-V-----------KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDF  131 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~---~la~~-~-----------~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~  131 (222)
                      ...|+|+|||+|.++.   .+++. +           .+|+|||.|+.++..++.... |+..+ |+++++|+.++....
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            4689999999999974   23321 1           299999999988877666554 77766 999999999986410


Q ss_pred             -CCCCCCCcEEEECCCC----CCccHHHHHHHHh-CCCCcEEE
Q 043853          132 -GNAFPKPDIVISDPNR----PGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       132 -~~~~~~fD~ii~~pp~----~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                       ....+++|+||+-.--    .++.++.++...+ |+|+|+++
T Consensus       489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence             0012589999998751    2244566665544 78888865

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.71  E-value=2e-08  Score=85.60  Aligned_cols=95  Identities=18%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             CCCeEEEEecc------cchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh--cCCCC
Q 043853           67 GSEIVLDLFCG------TGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAF  135 (222)
Q Consensus        67 ~~~~vlDlg~G------~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~--~~~~~  135 (222)
                      +..+|||+|||      +|+.++.+++.   ..+|+|+|+|+.|.         ...++++++++|+.+.+..  +....
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d  286 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY  286 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence            46799999999      78888877653   45999999999973         1235799999999886432  10001


Q ss_pred             CCCcEEEECCCCC-CccHHHHHHH-HhCCCCcEEEEe
Q 043853          136 PKPDIVISDPNRP-GMHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       136 ~~fD~ii~~pp~~-~~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                      +.||+|+++-... .-....++.+ +.|+|+|+++++
T Consensus       287 ~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          287 GPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             CCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEE
Confidence            4799999975421 0012333333 347899988875

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.70  E-value=3.1e-08  Score=80.42  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=62.6

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-CCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-AFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~ii~~p  145 (222)
                      ++..++|.+||.|+.+..+++...+++|+|.||.+++.|++ ++.   ++++++++|..++...+.. ..+.+|.|++|+
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~DL   97 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGVERVDGILADL   97 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCCCCcCEEEeCC
Confidence            47899999999999999998876799999999999999998 543   4799999999887543221 124799999987


Q ss_pred             C
Q 043853          146 N  146 (222)
Q Consensus       146 p  146 (222)
                      .
T Consensus        98 G   98 (285)
T 1wg8_A           98 G   98 (285)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.70  E-value=3.7e-08  Score=80.91  Aligned_cols=86  Identities=26%  Similarity=0.322  Sum_probs=59.1

Q ss_pred             CCCCeEEEEeccc------chhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEE-EeCchhchhhhcCCCC
Q 043853           66 DGSEIVLDLFCGT------GTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATF-VQGDLNKIGGDFGNAF  135 (222)
Q Consensus        66 ~~~~~vlDlg~G~------G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~-~~~d~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+      |.  ..+++.   ..+|+|+|+++.             ++++++ +++|+.+....     
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~-----  121 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTA-----  121 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCS-----
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCcc-----
Confidence            3578999999955      66  333332   359999999987             135788 99999876432     


Q ss_pred             CCCcEEEECCCCC-------------CccHHHHHHH-HhCCCCcEEEEee
Q 043853          136 PKPDIVISDPNRP-------------GMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       136 ~~fD~ii~~pp~~-------------~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +.||+|++|++..             .+...+++.+ +.|+|+|.+++..
T Consensus       122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4799999986421             1123445544 3489999988755

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.69  E-value=3.7e-07  Score=73.75  Aligned_cols=107  Identities=17%  Similarity=0.096  Sum_probs=72.3

Q ss_pred             CCCeEEEEecccchhHHHHhhc-------C-------CeEEEEeCCH---HHHH-----------HHHHHHHH-------
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-------V-------KHVYGYEVVP---QAIS-----------DACRNAKL-------  111 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-------~-------~~v~gvD~~~---~~i~-----------~a~~n~~~-------  111 (222)
                      +..+|||+|+|+|..++.+++.       .       .+++++|..|   +.+.           .|+.+++.       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999998875432       2       2899999887   4443           66776654       


Q ss_pred             -----c--CCCcEEEEeCchhchhhhcCCC-CCCCcEEEECC--CCCC---ccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          112 -----N--NISNATFVQGDLNKIGGDFGNA-FPKPDIVISDP--NRPG---MHMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       112 -----~--~~~~v~~~~~d~~~~~~~~~~~-~~~fD~ii~~p--p~~~---~~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                           .  +..+++++.+|+.+....+... ...||+|+.|+  |...   ....+++.+.+ ++|+|++..-+..
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa  215 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA  215 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC
Confidence                 1  2235889999999876554210 12799999997  4322   24566666655 7898887754433

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.67  E-value=1.2e-07  Score=85.30  Aligned_cols=94  Identities=18%  Similarity=0.191  Sum_probs=68.4

Q ss_pred             CCeEEEEecccchhHH---HHhhc-CC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcE
Q 043853           68 SEIVLDLFCGTGTIGL---TLARW-VK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~---~la~~-~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      ...|+|+|||+|.+..   .+++. +.  +|+|||.|| +...|++..+.|+..+ |+++++|++++...     +++|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-----EKVDI  431 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-----EKADI  431 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-----SCEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-----cccCE
Confidence            4689999999999844   33332 33  789999997 5667888999999876 99999999997542     58999


Q ss_pred             EEECCC-----CCCccHHHHHHHHh-CCCCcEEE
Q 043853          141 VISDPN-----RPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       141 ii~~pp-----~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      ||+-+=     ...+ ..++....+ |+|+|+++
T Consensus       432 IVSEwMG~fLl~E~m-levL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          432 IVSELLGSFADNELS-PECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EECCCCBTTBGGGCH-HHHHHHHGGGEEEEEEEE
T ss_pred             EEEEcCcccccccCC-HHHHHHHHHhcCCCcEEc
Confidence            999763     2222 344444433 67887765

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.66  E-value=1.8e-07  Score=78.98  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=69.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|+|+|||+|.++..+++..+  +++..|. |.+++.|++++...+.++++++.+|+.+.+.      ..+|++++.
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~------~~~D~~~~~  251 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL------PEADLYILA  251 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC------CCCSEEEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC------CCceEEEee
Confidence            467999999999999999998876  6777786 8999999998876666679999999976422      357998775


Q ss_pred             CC---CCC-ccHHHHHHHH-hCCCCcEEEEee
Q 043853          145 PN---RPG-MHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       145 pp---~~~-~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      --   +.+ ....+++.+. .++|+|.+++..
T Consensus       252 ~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          252 RVLHDWADGKCSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             eecccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence            42   111 0123444443 388988776544

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.65  E-value=2.6e-07  Score=77.69  Aligned_cols=95  Identities=15%  Similarity=0.126  Sum_probs=64.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ +.++.  +++++..+.. +++++.+|+.+..     +  .||+|++
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~-----p--~~D~v~~  253 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV-----P--HADVHVL  253 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC-----C--CCSEEEE
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC-----C--CCcEEEE
Confidence            478999999999999999988654  7899999 45555  3333333333 5999999996321     1  6999988


Q ss_pred             CCCCCCc-c---HHHHHHHHh-CCCCcEEEEee
Q 043853          144 DPNRPGM-H---MKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~-~---~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ...-... .   ..+++.+.+ ++|+|.+++..
T Consensus       254 ~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          254 KRILHNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             ehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6531111 1   345555544 89999887654

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.59  E-value=3.6e-07  Score=74.88  Aligned_cols=102  Identities=16%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc-----CCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN-----NISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      +.++||=+|.|.|+.+..+.+.  ..+++.+|+++..++.+++.+...     .-++++++.+|+.++...   ..++||
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~---~~~~yD  159 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ---TSQTFD  159 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC---SSCCEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh---ccccCC
Confidence            4689999999999999988875  359999999999999999987542     234699999999998754   235899


Q ss_pred             EEEECCCC------CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          140 IVISDPNR------PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~------~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      +|+.|.+.      .-...++.+.+++ |+|+|++...+
T Consensus       160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            99999752      1133566666654 89999887654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.57  E-value=1e-07  Score=80.19  Aligned_cols=91  Identities=21%  Similarity=0.247  Sum_probs=66.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|||+|||+|.++..+++..  .+++++|+ +.+++.|++      .++++++.+|+.+ ..      ..||+|++.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~------p~~D~v~~~  253 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SI------PNADAVLLK  253 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CC------CCCSEEEEE
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CC------CCccEEEee
Confidence            46799999999999999998764  38999999 999998875      2459999999976 21      149999886


Q ss_pred             CCCCCc--cH--HHHHHHHh-CCC---CcEEEEee
Q 043853          145 PNRPGM--HM--KLIKFLLK-LKA---PRIVYVSC  171 (222)
Q Consensus       145 pp~~~~--~~--~~~~~l~~-l~~---~~~v~~~~  171 (222)
                      -.-...  ..  .+++.+.+ ++|   +|.+++..
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            531111  11  44444433 788   88876654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.55  E-value=2.7e-07  Score=78.22  Aligned_cols=91  Identities=22%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.|+++      ++++++.+|+.+ +.  .   .. |+|++.
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~--p---~~-D~v~~~  268 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GV--P---KG-DAIFIK  268 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CC--C---CC-SEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CC--C---CC-CEEEEe
Confidence            468999999999999999988654  8999999 9999887642      469999999976 22  1   12 999886


Q ss_pred             CCCCCcc----HHHHHHHH-hCCCCcEEEEee
Q 043853          145 PNRPGMH----MKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~~~~----~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      -.-....    ..+++.+. .++|+|.+++..
T Consensus       269 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          269 WICHDWSDEHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             SCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            5311111    23444443 489999877644

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.54  E-value=2e-07  Score=79.09  Aligned_cols=90  Identities=20%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ +.+++.|++      .++++++.+|+.+ +.      ..||+|++.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~------~~~D~v~~~  274 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SV------PQGDAMILK  274 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CC------CCEEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CC------CCCCEEEEe
Confidence            468999999999999999988754  7888899 999988875      2469999999976 22      138999986


Q ss_pred             CCCCCc--cH--HHHHHHHh-CCCCcEEEEe
Q 043853          145 PNRPGM--HM--KLIKFLLK-LKAPRIVYVS  170 (222)
Q Consensus       145 pp~~~~--~~--~~~~~l~~-l~~~~~v~~~  170 (222)
                      -.-...  ..  .+++.+.+ ++|+|.+++.
T Consensus       275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            531111  11  44454443 7899887765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.53  E-value=2e-07  Score=76.76  Aligned_cols=58  Identities=29%  Similarity=0.358  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN  112 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~  112 (222)
                      .+++.+.....   .++..|||+|||+|..++++++.+.+++|+|+++.+++.|+++++..
T Consensus       223 ~l~~~~i~~~~---~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          223 ELAERLVRMFS---FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHC---CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            34444444433   34789999999999999999998999999999999999999999764

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.51  E-value=3.5e-07  Score=77.47  Aligned_cols=91  Identities=22%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.|++.      ++++++.+|+.+ +..     .. |+|++.
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p-----~~-D~v~~~  266 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFK-EVP-----SG-DTILMK  266 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCC-----CC-SEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCC-CCC-----CC-CEEEeh
Confidence            468999999999999999988654  8999999 8998887642      469999999987 321     12 999885


Q ss_pred             CCCCCc----cHHHHHHHH-hCCCCcEEEEee
Q 043853          145 PNRPGM----HMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~~~----~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      -.....    ...+++.+. .++|+|.+++..
T Consensus       267 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          267 WILHDWSDQHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            431111    123444443 389999887644

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.50  E-value=2e-07  Score=78.61  Aligned_cols=91  Identities=22%  Similarity=0.264  Sum_probs=65.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ +.+++.|++      .++++++.+|+.+ +.      ..||+|++.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~------~~~D~v~~~  258 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SI------PSADAVLLK  258 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CC------CCCSEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CC------CCceEEEEc
Confidence            357999999999999999988754  8999999 789887764      3469999999976 22      259999987


Q ss_pred             CCCCCcc----HHHHHHHHh-CCC---CcEEEEee
Q 043853          145 PNRPGMH----MKLIKFLLK-LKA---PRIVYVSC  171 (222)
Q Consensus       145 pp~~~~~----~~~~~~l~~-l~~---~~~v~~~~  171 (222)
                      -......    ..+++.+.+ ++|   +|.+++..
T Consensus       259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            5411111    144444433 788   88776543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.49  E-value=7.8e-07  Score=72.66  Aligned_cols=102  Identities=11%  Similarity=0.036  Sum_probs=74.4

Q ss_pred             CCeEEEEecccchhHHHHhhc-------CCeEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW-------VKHVYGYEVVP--------------------------QAISDACRNAKLNNI  114 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~-------~~~v~gvD~~~--------------------------~~i~~a~~n~~~~~~  114 (222)
                      ...|||+|+..|+.++.++..       ..+++++|...                          ..++.+++|++..|+
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            469999999999999877642       45899999631                          147889999999998


Q ss_pred             --CcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          115 --SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       115 --~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                        ++++++.||+.+....+.  ..+||+|++|-.........++.+ ..+.+||+++++-
T Consensus       187 ~~~~I~li~Gda~etL~~~~--~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPTAP--IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             CSTTEEEEESCHHHHSTTCC--CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CcCceEEEEeCHHHHHhhCC--CCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcC
Confidence              469999999988776543  247999999974211112334443 3378889887654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.46  E-value=1e-06  Score=73.54  Aligned_cols=92  Identities=21%  Similarity=0.231  Sum_probs=70.8

Q ss_pred             CCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ..+++|++||+|++++.+...+. .+.++|+++.+++..+.|....     .  ++|+.++.....   ..+|+++.+||
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~--~~Di~~~~~~~~---~~~D~l~~gpP   80 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P--EGDITQVNEKTI---PDHDILCAGFP   80 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C--BSCGGGSCGGGS---CCCSEEEEECC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C--cCCHHHcCHhhC---CCCCEEEECCC
Confidence            46899999999999998876544 7889999999999999997421     1  689888765422   36999999998


Q ss_pred             ----------------CCCccHHHHHHHHhCCCCcEEEE
Q 043853          147 ----------------RPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       147 ----------------~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                                      +..+...+++.+..++|.-+++-
T Consensus        81 CQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~E  119 (327)
T 2c7p_A           81 CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFME  119 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEE
T ss_pred             CCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEe
Confidence                            22355677777877888766653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.41  E-value=4e-07  Score=73.57  Aligned_cols=49  Identities=20%  Similarity=0.355  Sum_probs=43.1

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI  114 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~  114 (222)
                      .++..|||++||+|+.++++++.+.+++|+|+++.+++.|+++++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            3578999999999999999998899999999999999999999986654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=98.38  E-value=4.1e-06  Score=69.73  Aligned_cols=92  Identities=24%  Similarity=0.288  Sum_probs=71.2

Q ss_pred             CeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853           69 EIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-  146 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-  146 (222)
                      .+|||++||.|++++.+.+.+- -+.++|+++.+++..+.|..      -+++.+|+.++.....   ...|+++..|| 
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~---~~~D~l~ggpPC   71 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF---PKCDGIIGGPPS   71 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS---CCCSEEECCCCG
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC---CcccEEEecCCC
Confidence            3799999999999998877554 67799999999999888852      3678899988765422   47999999998 


Q ss_pred             ---------------CCCccHHHHHHHHhCCCCcEEEE
Q 043853          147 ---------------RPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       147 ---------------~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                                     +..+...+++.+..++|.-+++-
T Consensus        72 Q~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~E  109 (331)
T 3ubt_Y           72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAE  109 (331)
T ss_dssp             GGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEE
T ss_pred             CCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEee
Confidence                           22345667777777888776663

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=98.27  E-value=4.2e-06  Score=68.82  Aligned_cols=93  Identities=18%  Similarity=0.186  Sum_probs=68.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKH---VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~---v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ...+++|++||.|++++.+.+.+.+   +.++|+++.+++..+.|..     +..++.+|+.++..........+|+++.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~~~~~Dll~g   89 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQEWGPFDLVIG   89 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHHTCCCSEEEE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcccCCcCEEEe
Confidence            4668999999999999988776543   6999999999998888752     4568889998875431111136999999


Q ss_pred             CCCC-----------------CCccHHHHHHHHhCCCC
Q 043853          144 DPNR-----------------PGMHMKLIKFLLKLKAP  164 (222)
Q Consensus       144 ~pp~-----------------~~~~~~~~~~l~~l~~~  164 (222)
                      .||.                 ..+..++++.+..++|.
T Consensus        90 gpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~  127 (295)
T 2qrv_A           90 GSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPK  127 (295)
T ss_dssp             CCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred             cCCCccccccCccccccccccchhHHHHHHHHHHhCcc
Confidence            9981                 23445667777777776

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.25  E-value=3e-06  Score=71.64  Aligned_cols=106  Identities=17%  Similarity=0.089  Sum_probs=75.7

Q ss_pred             CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHc-----CC---CcEEEEeCchhchhhhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLN-----NI---SNATFVQGDLNKIGGDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~-----~~---~~v~~~~~d~~~~~~~~~~~~~~  137 (222)
                      +.++||=+|.|.|+.+..+.+. ..+++.+|++|..++.|++.+...     ..   ++++++.+|+.++........++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            4689999999999999987764 358999999999999999875321     11   24899999999887543222357


Q ss_pred             CcEEEECCCC---C----Cc-----cHHHHHHHH-hCCCCcEEEEeeC
Q 043853          138 PDIVISDPNR---P----GM-----HMKLIKFLL-KLKAPRIVYVSCN  172 (222)
Q Consensus       138 fD~ii~~pp~---~----~~-----~~~~~~~l~-~l~~~~~v~~~~~  172 (222)
                      ||+|+.|.+.   .    +.     ..++.+.++ .|+++|++...++
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~  332 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN  332 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            9999998531   1    11     134444444 3889998876554

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=98.22  E-value=5.7e-06  Score=69.18  Aligned_cols=94  Identities=17%  Similarity=0.214  Sum_probs=70.7

Q ss_pred             CeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           69 EIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      -+++|++||.|++++.+.+.+   .-+.++|+++.+++..+.|..     +..++.+|+.++....... ..+|+++..|
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~-~~~D~l~ggp   77 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKK-WNVDTILMSP   77 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHH-TTCCEEEECC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhcc-CCCCEEEecC
Confidence            479999999999999887755   358899999999999988863     3457788988775421110 2699999999


Q ss_pred             C----------------CCCccHHHHHHHHhCC-CCcEEE
Q 043853          146 N----------------RPGMHMKLIKFLLKLK-APRIVY  168 (222)
Q Consensus       146 p----------------~~~~~~~~~~~l~~l~-~~~~v~  168 (222)
                      |                +..+...+++.+..++ |.-+++
T Consensus        78 PCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vl  117 (333)
T 4h0n_A           78 PCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILM  117 (333)
T ss_dssp             CCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEE
T ss_pred             CCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEE
Confidence            8                2345667888887786 766555

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.20  E-value=9.1e-06  Score=68.38  Aligned_cols=73  Identities=18%  Similarity=0.057  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCCC----CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhc
Q 043853           53 LYKLIEDCAGLRDD----GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK  126 (222)
Q Consensus        53 ~~~~i~~~~~~~~~----~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~  126 (222)
                      +++.|.+.++....    ++..|||+|.|.|.+|..|++.  ..+++++|+|+..+...++.. .  .++++++++|+.+
T Consensus        40 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l~  116 (353)
T 1i4w_A           40 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPYD  116 (353)
T ss_dssp             HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTTC
T ss_pred             HHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCccc
Confidence            34445555443321    3589999999999999999875  569999999999999998876 2  3579999999977


Q ss_pred             hh
Q 043853          127 IG  128 (222)
Q Consensus       127 ~~  128 (222)
                      +.
T Consensus       117 ~~  118 (353)
T 1i4w_A          117 WS  118 (353)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.12  E-value=1.7e-06  Score=65.23  Aligned_cols=85  Identities=7%  Similarity=0.051  Sum_probs=61.4

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .++.+|||+|||.              +++|+|+.|++.|+++...    ++++.++|+.+++... -+.+.||+|++.-
T Consensus        11 ~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~-~~~~~fD~V~~~~   71 (176)
T 2ld4_A           11 SAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSA-HKESSFDIILSGL   71 (176)
T ss_dssp             CTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGC-CCSSCEEEEEECC
T ss_pred             CCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCcccc-CCCCCEeEEEECC
Confidence            4589999999996              2399999999999988642    4889999998875410 0125799999964


Q ss_pred             C--C--CCccHHHHHHHH-hCCCCcEEEEe
Q 043853          146 N--R--PGMHMKLIKFLL-KLKAPRIVYVS  170 (222)
Q Consensus       146 p--~--~~~~~~~~~~l~-~l~~~~~v~~~  170 (222)
                      .  .  ... ..+++.+. .++|+|.+++.
T Consensus        72 ~l~~~~~~~-~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           72 VPGSTTLHS-AEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             STTCCCCCC-HHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhcccCH-HHHHHHHHHHCCCCEEEEEE
Confidence            3  1  233 55555554 48999998874

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.12  E-value=5.5e-06  Score=69.81  Aligned_cols=92  Identities=14%  Similarity=0.138  Sum_probs=63.8

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .+++++||+||..|+++..+++.+..|+|||..+-. ...      ...++|+++++|+.++...    ..++|+|++|.
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~-~~l------~~~~~V~~~~~d~~~~~~~----~~~~D~vvsDm  278 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMA-QSL------MDTGQVTWLREDGFKFRPT----RSNISWMVCDM  278 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCC-HHH------HTTTCEEEECSCTTTCCCC----SSCEEEEEECC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcC-hhh------ccCCCeEEEeCccccccCC----CCCcCEEEEcC
Confidence            358999999999999999999888899999986421 111      1235799999999886542    24799999997


Q ss_pred             CCC--CccHHHHHHHHhCCCCcEEE
Q 043853          146 NRP--GMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       146 p~~--~~~~~~~~~l~~l~~~~~v~  168 (222)
                      ...  +....+.+.+.....++.++
T Consensus       279 ~~~p~~~~~l~~~wl~~~~~~~aI~  303 (375)
T 4auk_A          279 VEKPAKVAALMAQWLVNGWCRETIF  303 (375)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCSEEEE
T ss_pred             CCChHHhHHHHHHHHhccccceEEE
Confidence            422  22233333444444455555

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=98.02  E-value=1.4e-05  Score=66.58  Aligned_cols=76  Identities=14%  Similarity=0.115  Sum_probs=57.7

Q ss_pred             CCeEEEEecccchhHHHHhhcC---CeE-EEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV---KHV-YGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~---~~v-~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .-+++|++||.|++++.+.+.+   ..+ .++|+++.+++..+.|...     . ++++|+.++....... ..+|+++.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~-~~~Dil~g   82 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIES-LNCNTWFM   82 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHH-TCCCEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhcc-CCCCEEEe
Confidence            4589999999999999888765   456 7999999999999999742     2 5678887764321100 26899999


Q ss_pred             CCCCCCc
Q 043853          144 DPNRPGM  150 (222)
Q Consensus       144 ~pp~~~~  150 (222)
                      .||..+.
T Consensus        83 gpPCQ~f   89 (327)
T 3qv2_A           83 SPPCQPY   89 (327)
T ss_dssp             CCCCTTC
T ss_pred             cCCccCc
Confidence            9995554

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.89  E-value=2.5e-05  Score=64.90  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=61.7

Q ss_pred             HHHHhcCCCCCCCeEEEEecccchhHHHHhhc-C--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           57 IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-V--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        57 i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      +.+.+...  ++..++|..||.|+.+..+++. +  .+++|+|.+|.+++.|+ ++   ..+++++++++..++...+..
T Consensus        49 vl~~L~i~--pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L~~  122 (347)
T 3tka_A           49 AVNGLNIR--PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYVAE  122 (347)
T ss_dssp             HHHHTCCC--TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHhhCCC--CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHHHh
Confidence            44444433  4789999999999999988875 2  48999999999999994 33   234699999999887543321


Q ss_pred             C-C-CCCcEEEECC
Q 043853          134 A-F-PKPDIVISDP  145 (222)
Q Consensus       134 ~-~-~~fD~ii~~p  145 (222)
                      . . +.+|.|+.|.
T Consensus       123 ~g~~~~vDgILfDL  136 (347)
T 3tka_A          123 RDLIGKIDGILLDL  136 (347)
T ss_dssp             TTCTTCEEEEEEEC
T ss_pred             cCCCCcccEEEECC
Confidence            1 1 2599999886

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.87  E-value=0.00027  Score=61.84  Aligned_cols=78  Identities=18%  Similarity=0.179  Sum_probs=57.6

Q ss_pred             CCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc-------------CC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF-------------GN  133 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~-------------~~  133 (222)
                      .-+++|++||.|++++.+.+.+. -+.++|+++.+++..+.|...  .++..++.+|+.++....             ..
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~  165 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ  165 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence            35899999999999998877554 589999999999988888621  123567789988775210             00


Q ss_pred             CCCCCcEEEECCCC
Q 043853          134 AFPKPDIVISDPNR  147 (222)
Q Consensus       134 ~~~~fD~ii~~pp~  147 (222)
                      ....+|+++..||+
T Consensus       166 ~~~~~Dvl~gGpPC  179 (482)
T 3me5_A          166 HIPEHDVLLAGFPC  179 (482)
T ss_dssp             HSCCCSEEEEECCC
T ss_pred             cCCCCCEEEecCCC
Confidence            11368999999983

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.77  E-value=2e-05  Score=65.59  Aligned_cols=63  Identities=25%  Similarity=0.375  Sum_probs=52.2

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG  129 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~  129 (222)
                      .++..|||.+||+|+.+++..+.+.+.+|+|+++..++.++++++..+.+ ...++.|+.++..
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~i~~  313 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNRILN  313 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHc
Confidence            35789999999999999999988999999999999999999998765543 5555666666543

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=97.74  E-value=0.00056  Score=63.37  Aligned_cols=54  Identities=15%  Similarity=0.202  Sum_probs=41.6

Q ss_pred             CCeEEEEecccchhHHHHhhcC-------CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhc
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV-------KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK  126 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~-------~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~  126 (222)
                      ..+||||+||.|++++.+.+.+       .-+.++|+++.+++..+.|..     +..+.+.|+.+
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp-----~~~~~~~di~~  272 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP-----QTEVRNEKADE  272 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT-----TSEEEESCHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC-----CCceecCcHHH
Confidence            4579999999999999776543       367899999999999988853     34555666543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.71  E-value=3.3e-05  Score=64.19  Aligned_cols=48  Identities=15%  Similarity=0.189  Sum_probs=41.1

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCH---HHHHHHHHHHHHcC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP---QAISDACRNAKLNN  113 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~---~~i~~a~~n~~~~~  113 (222)
                      .++..|||.+||+|+.+++..+.+.+.+|+|+++   ..++.++++++..+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            3578999999999999999999899999999999   99999999887554

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=97.59  E-value=0.00046  Score=65.25  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh-----c-------C
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD-----F-------G  132 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~-----~-------~  132 (222)
                      ..-+++|++||.|++++.+.+.+.  .+.++|+++.+++..+.|.     ++..++.+|+.++...     .       .
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhhc
Confidence            345899999999999998877664  6789999999999888874     3567888887654210     0       0


Q ss_pred             CCCCCCcEEEECCCCCC------------------ccHHHHHHHHhCCCCcEEEEe
Q 043853          133 NAFPKPDIVISDPNRPG------------------MHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~------------------~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      .....+|+|+..||..+                  +...+++.+..++|.-+++-.
T Consensus       614 p~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk~~llEN  669 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLEN  669 (1002)
T ss_dssp             CCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCSEEEEEE
T ss_pred             ccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCCCEEEEec
Confidence            01136899999999322                  223455666667887766633

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.18  E-value=0.003  Score=49.77  Aligned_cols=88  Identities=20%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-chh
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQG-DLN  125 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-d~~  125 (222)
                      ..-++.++.... .+.  ++..|+|+||+.|+++...+..  ...|+|+|+-+.-.+.= ..++..|-..++|.++ |+.
T Consensus        63 a~~KL~ei~ek~-~l~--~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~  138 (267)
T 3p8z_A           63 GSAKLQWFVERN-MVI--PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVF  138 (267)
T ss_dssp             HHHHHHHHHHTT-SSC--CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGG
T ss_pred             HHHHHHHHHHhc-CCC--CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEecccee
Confidence            334444433333 333  4779999999999999966653  34899999975432100 0001123334999999 986


Q ss_pred             chhhhcCCCCCCCcEEEECCC
Q 043853          126 KIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ....      .++|.|+||.-
T Consensus       139 ~~~~------~~~DtllcDIg  153 (267)
T 3p8z_A          139 YLPP------EKCDTLLCDIG  153 (267)
T ss_dssp             GCCC------CCCSEEEECCC
T ss_pred             ecCC------ccccEEEEecC
Confidence            5543      37999999973

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=97.16  E-value=0.0017  Score=63.02  Aligned_cols=96  Identities=14%  Similarity=0.130  Sum_probs=67.8

Q ss_pred             CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc------------CC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF------------GN  133 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~------------~~  133 (222)
                      ..+++|++||.|++++.+.+.+.  .+.++|+++.+++..+.|.     ++..++.+|+.++....            ..
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp  925 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQRLP  925 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCBCC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhhcc
Confidence            46899999999999999887664  5889999999999888874     34567788876553110            00


Q ss_pred             CCCCCcEEEECCCCCC------------------ccHHHHHHHHhCCCCcEEE
Q 043853          134 AFPKPDIVISDPNRPG------------------MHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~------------------~~~~~~~~l~~l~~~~~v~  168 (222)
                      ....+|+++..||..+                  +...+++.+..++|.-+++
T Consensus       926 ~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rPk~fv~  978 (1330)
T 3av4_A          926 QKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLL  978 (1330)
T ss_dssp             CTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCCSEEEE
T ss_pred             ccCccceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcCcEEEE
Confidence            1136899999999322                  1223555666678876665

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.15  E-value=0.0013  Score=56.46  Aligned_cols=58  Identities=17%  Similarity=0.026  Sum_probs=47.6

Q ss_pred             CCCCeEEEEecccchhHHHHh-hcC---CeEEEEeCCHHHHHHHHHHHHH--c-CC-CcEEEEeCc
Q 043853           66 DGSEIVLDLFCGTGTIGLTLA-RWV---KHVYGYEVVPQAISDACRNAKL--N-NI-SNATFVQGD  123 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la-~~~---~~v~gvD~~~~~i~~a~~n~~~--~-~~-~~v~~~~~d  123 (222)
                      .++..++|+||+.|..++.++ +..   .+|+++|-+|...+.+++|++.  | +. +++++++.-
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~a  290 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG  290 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeE
Confidence            457899999999999999877 433   5899999999999999999998  3 45 567766543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.10  E-value=0.00026  Score=57.25  Aligned_cols=87  Identities=22%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeC-ch
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQG-DL  124 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~-d~  124 (222)
                      .+-+|.++.... .+.  ++.+|||||||.|+++..+++.  ...+.|+|+...+...+... ...+. + +.+... |+
T Consensus        75 AAfKL~ei~eK~-~Lk--~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv  149 (282)
T 3gcz_A           75 GSAKLRWMEERG-YVK--PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDV  149 (282)
T ss_dssp             HHHHHHHHHHTT-SCC--CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCG
T ss_pred             HHHHHHHHHHhc-CCC--CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcch
Confidence            444555544443 333  4679999999999999977753  33788999975432222110 00111 3 333322 44


Q ss_pred             hchhhhcCCCCCCCcEEEECCC
Q 043853          125 NKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus       125 ~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ..+.      ..++|+|++|..
T Consensus       150 ~~l~------~~~~DvVLSDmA  165 (282)
T 3gcz_A          150 FNME------VIPGDTLLCDIG  165 (282)
T ss_dssp             GGSC------CCCCSEEEECCC
T ss_pred             hhcC------CCCcCEEEecCc
Confidence            3322      258999999973

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.03  E-value=0.0018  Score=52.21  Aligned_cols=115  Identities=16%  Similarity=0.094  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN  125 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~  125 (222)
                      +.+-+|.++... ..+.  ++.+|||||||.|+++..+++.  ...+.|+|+.-.+....... ...+. ++..+.+++.
T Consensus        58 RaA~KL~ei~ek-~~l~--~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~d  132 (277)
T 3evf_A           58 RGTAKLRWFHER-GYVK--LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTD  132 (277)
T ss_dssp             THHHHHHHHHHT-TSSC--CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCC
T ss_pred             cHHHHHHHHHHh-CCCC--CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccce
Confidence            345555554444 3233  4679999999999999977754  34778888873221000000 00011 3344455442


Q ss_pred             chhhhcCCCCCCCcEEEECC-CCCCcc--H-----HHHHHH-HhCCCC-cEEEEee
Q 043853          126 KIGGDFGNAFPKPDIVISDP-NRPGMH--M-----KLIKFL-LKLKAP-RIVYVSC  171 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~p-p~~~~~--~-----~~~~~l-~~l~~~-~~v~~~~  171 (222)
                      ...  +  ...+||+|++|. |..+..  .     .+++.. ..|+|+ |.+++..
T Consensus       133 v~~--l--~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV  184 (277)
T 3evf_A          133 IHR--L--EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV  184 (277)
T ss_dssp             TTT--S--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             ehh--c--CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence            211  1  125799999997 322221  0     111222 237888 8776554

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.98  E-value=0.0031  Score=51.30  Aligned_cols=73  Identities=22%  Similarity=0.191  Sum_probs=48.0

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-chhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQG-DLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++..|||+||++|+++...+..  ...|+|+|+-..-.+.=+ .++..+-.-|.+..+ |+..+..      .++|+|+|
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~~------~~~D~ivc  166 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRPS------ECCDTLLC  166 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSCC------CCCSEEEE
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCCC------CCCCEEEE
Confidence            4679999999999999966643  338999999754111000 000111112888888 8866543      36999999


Q ss_pred             CCC
Q 043853          144 DPN  146 (222)
Q Consensus       144 ~pp  146 (222)
                      |.-
T Consensus       167 Dig  169 (321)
T 3lkz_A          167 DIG  169 (321)
T ss_dssp             CCC
T ss_pred             ECc
Confidence            985

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=96.86  E-value=0.0036  Score=53.53  Aligned_cols=44  Identities=18%  Similarity=0.036  Sum_probs=37.0

Q ss_pred             CCeEEEEecccchhHHHHhhcC---Ce----EEEEeCCHHHHHHHHHHHHH
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV---KH----VYGYEVVPQAISDACRNAKL  111 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~---~~----v~gvD~~~~~i~~a~~n~~~  111 (222)
                      .-+|+|++||.|++.+.+.+.+   .-    +.++|+++.+++.-+.|...
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            3589999999999999887644   34    88999999999999988853

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.85  E-value=0.00025  Score=56.56  Aligned_cols=71  Identities=23%  Similarity=0.180  Sum_probs=42.8

Q ss_pred             CCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHH-H-cCCCcEEEEeC-chhchhhhcCCCCCCCcE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAK-L-NNISNATFVQG-DLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~-~-~~~~~v~~~~~-d~~~~~~~~~~~~~~fD~  140 (222)
                      .++.+|+||||+.|+++..+++.  ...|.|.++.... . .. -+. . .|..=+.+.++ |+.+..      ..++|+
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~-P~~~~~~Gv~~i~~~~G~Df~~~~------~~~~Dv  142 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EE-PMLMQSYGWNIVTMKSGVDVFYKP------SEISDT  142 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CC-CCCCCSTTGGGEEEECSCCGGGSC------CCCCSE
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cC-CCcccCCCceEEEeeccCCccCCC------CCCCCE
Confidence            35899999999999999988876  3233343332210 0 00 000 0 11111466667 998743      137999


Q ss_pred             EEECC
Q 043853          141 VISDP  145 (222)
Q Consensus       141 ii~~p  145 (222)
                      |++|.
T Consensus       143 VLSDM  147 (269)
T 2px2_A          143 LLCDI  147 (269)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99997

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.44  E-value=0.0039  Score=50.73  Aligned_cols=48  Identities=33%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCH
Q 043853           49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVP   99 (222)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~   99 (222)
                      .+-.|.++...  .+.. ++.+|||+||+.|+++..+++.  ...+.|+|+..
T Consensus        66 aa~KL~ei~ek--~l~~-~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           66 GAAKIRWLHER--GYLR-ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             THHHHHHHHHH--TSCC-CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             HHHHHHHHHHh--CCCC-CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            34445554444  3332 5889999999999999988864  33788999974

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.38  E-value=0.026  Score=46.31  Aligned_cols=123  Identities=13%  Similarity=0.045  Sum_probs=72.2

Q ss_pred             CCeEEEEecccchhHHHHh----hcCC----eEEEEeCCH--------HHH-HHHHHHHHHc---CCCc--EEEEeCchh
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVK----HVYGYEVVP--------QAI-SDACRNAKLN---NISN--ATFVQGDLN  125 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~----~v~gvD~~~--------~~i-~~a~~n~~~~---~~~~--v~~~~~d~~  125 (222)
                      .-+|+|+|=|+|...+...    +..+    +.+++|..+        ... +..+......   .-.+  +++..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            3579999999999765322    1222    567888632        111 2222222221   1122  688899998


Q ss_pred             chhhhcCCCCCCCcEEEECC--CCCC---ccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEe
Q 043853          126 KIGGDFGNAFPKPDIVISDP--NRPG---MHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK  199 (222)
Q Consensus       126 ~~~~~~~~~~~~fD~ii~~p--p~~~---~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  199 (222)
                      +....+..  ..+|+++.|+  |...   ...++...+.+ +++++++..-|.....-+.+.           +.||.+.
T Consensus       177 ~~l~~l~~--~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag~VRR~L~-----------~aGF~V~  243 (308)
T 3vyw_A          177 KRIKEVEN--FKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSLSVRKSLL-----------TLGFKVG  243 (308)
T ss_dssp             HHGGGCCS--CCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCHHHHHHHH-----------HTTCEEE
T ss_pred             HHHhhhcc--cceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHH-----------HCCCEEE
Confidence            88776532  3699999997  4221   23567777765 578887765554433333333           4577777


Q ss_pred             Eeee
Q 043853          200 SLQP  203 (222)
Q Consensus       200 ~~~~  203 (222)
                      ...+
T Consensus       244 k~~G  247 (308)
T 3vyw_A          244 SSRE  247 (308)
T ss_dssp             EEEC
T ss_pred             ecCC
Confidence            6654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.23  E-value=0.075  Score=43.31  Aligned_cols=116  Identities=18%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEec------ccchhHHH-HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC
Q 043853           50 AEVLYKLIEDCAGLRDDGSEIVLDLFC------GTGTIGLT-LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG  122 (222)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~------G~G~~~~~-la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~  122 (222)
                      ...+++.+.. ..+..+-+++|||+|+      -.|+..+. +...+..++++|+.|-..           ..+ .++++
T Consensus        93 ytqlcqyl~~-~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqG  159 (344)
T 3r24_A           93 YTQLCQYLNT-LTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIG  159 (344)
T ss_dssp             HHHHHHHHTT-SCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEES
T ss_pred             HHHHHHHhcc-ccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEc
Confidence            3344555522 2233345899999997      45664332 212234899999986431           112 44999


Q ss_pred             chhchhhhcCCCCCCCcEEEECCC----------C--C-CccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHh
Q 043853          123 DLNKIGGDFGNAFPKPDIVISDPN----------R--P-GMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       123 d~~~~~~~~~~~~~~fD~ii~~pp----------~--~-~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      |..+....     .+||+|++|..          +  . .+.+.+++.... |+++|.+.+-.-..+-...+..+
T Consensus       160 D~~~~~~~-----~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~l  229 (344)
T 3r24_A          160 DCATVHTA-----NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKL  229 (344)
T ss_dssp             CGGGEEES-----SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHH
T ss_pred             cccccccC-----CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHH
Confidence            98664331     48999999963          1  1 234555555544 88999887666333333444444

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.07  E-value=0.043  Score=39.23  Aligned_cols=103  Identities=8%  Similarity=-0.114  Sum_probs=62.1

Q ss_pred             CCeEEEEeccc-chhHH-HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGT-GTIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~-G~~~~-~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ..+|+=+|||. |.... .+.+.+.+++++|.+++.++.+++    .   ++.++.+|..+...-........|++++..
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence            35788888763 22222 333456799999999998887764    2   467888988654211111123689998876


Q ss_pred             CCCCccHHHHHHHHhCCCCcEEEEeeCccchH
Q 043853          146 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCA  177 (222)
Q Consensus       146 p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~  177 (222)
                      |.......+...++.+.+...++.-.+.....
T Consensus        80 ~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~  111 (140)
T 3fwz_A           80 PNGYEAGEIVASARAKNPDIEIIARAHYDDEV  111 (140)
T ss_dssp             SCHHHHHHHHHHHHHHCSSSEEEEEESSHHHH
T ss_pred             CChHHHHHHHHHHHHHCCCCeEEEEECCHHHH
Confidence            64332333455566667776666555543333

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=95.86  E-value=0.11  Score=44.05  Aligned_cols=74  Identities=12%  Similarity=0.038  Sum_probs=44.0

Q ss_pred             CCeEEEEecccchhHHHHhhc-----------------CC--eEEEEeCC-----------HHHHHHHHHHHHHcCC-Cc
Q 043853           68 SEIVLDLFCGTGTIGLTLARW-----------------VK--HVYGYEVV-----------PQAISDACRNAKLNNI-SN  116 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~-----------------~~--~v~gvD~~-----------~~~i~~a~~n~~~~~~-~~  116 (222)
                      ..+|+|+||++|..++.+...                 .+  +++..|+-           |...+.+++   ..+. .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            478999999999999866533                 12  67777876           444443322   2221 12


Q ss_pred             EEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853          117 ATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      --++.+....+-..+- +.+.+|+|+++-
T Consensus       130 ~~f~~gvpgSFy~rlf-p~~S~d~v~Ss~  157 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLF-PEESMHFLHSCY  157 (384)
T ss_dssp             SEEEEECCSCTTSCCS-CTTCEEEEEEES
T ss_pred             ceEEEecchhhhhccC-CCCceEEEEecc
Confidence            3555555555433222 235899998864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.67  E-value=0.11  Score=36.92  Aligned_cols=103  Identities=12%  Similarity=0.017  Sum_probs=60.5

Q ss_pred             CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++++=+|+|  .++..++    +.+.+|+++|.+++.++.+++.       .+.++.+|..+...-.......+|+++.
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-------GFDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-------TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-------CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            3578888885  4554443    4567999999999988777542       3578888886642211111246899998


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhH
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                      ..|.......+...++.+. ...++...........+
T Consensus        77 ~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l  112 (141)
T 3llv_A           77 TGSDDEFNLKILKALRSVS-DVYAIVRVSSPKKKEEF  112 (141)
T ss_dssp             CCSCHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred             ecCCHHHHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence            8773332333444455556 44455444443333333

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.45  E-value=0.14  Score=38.06  Aligned_cols=98  Identities=15%  Similarity=0.069  Sum_probs=58.7

Q ss_pred             CCeEEEEeccc-chhHH-HHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh--hhcCCCCCCCcEEE
Q 043853           68 SEIVLDLFCGT-GTIGL-TLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG--GDFGNAFPKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~-G~~~~-~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~fD~ii  142 (222)
                      +.+|+=+|+|. |.... .+.+. +.+|+++|.+++.++.+++    .+   +.++.+|..+..  ... .....+|+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g---~~~~~gd~~~~~~l~~~-~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG---RNVISGDATDPDFWERI-LDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT---CCEEECCTTCHHHHHTB-CSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC---CCEEEcCCCCHHHHHhc-cCCCCCCEEE
Confidence            45788787753 22222 33445 6799999999988776653    23   456777765432  221 0124689998


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      ...|.......+...++.+.+...++...+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~  141 (183)
T 3c85_A          111 LAMPHHQGNQTALEQLQRRNYKGQIAAIAEY  141 (183)
T ss_dssp             ECCSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             EeCCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            8766433334445566667766666666554

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.31  E-value=0.13  Score=41.15  Aligned_cols=116  Identities=10%  Similarity=0.068  Sum_probs=68.8

Q ss_pred             CeEEEEecccchhHHHHhhc---------CCeEEEEeC-----CH----------------------HHHHHH---HHHH
Q 043853           69 EIVLDLFCGTGTIGLTLARW---------VKHVYGYEV-----VP----------------------QAISDA---CRNA  109 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~~---------~~~v~gvD~-----~~----------------------~~i~~a---~~n~  109 (222)
                      ..|+|+||-.|..+..++..         ..+++++|.     .+                      +.++..   +++.
T Consensus        71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~  150 (257)
T 3tos_A           71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS  150 (257)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred             CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence            48999999999988876531         258999992     11                      112211   1122


Q ss_pred             HHcCC--CcEEEEeCchhchhhhcC--CCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeC----ccchHhhH
Q 043853          110 KLNNI--SNATFVQGDLNKIGGDFG--NAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCN----PATCARDL  180 (222)
Q Consensus       110 ~~~~~--~~v~~~~~d~~~~~~~~~--~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~----~~~~~~~~  180 (222)
                      +..+.  ++++++.|++.+....+.  .+..++|++++|-.........++.+ ..+.+||+++++.-    ...+.+.+
T Consensus       151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~  230 (257)
T 3tos_A          151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAM  230 (257)
T ss_dssp             STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHH
T ss_pred             hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHH
Confidence            22343  469999999988765531  12347999999974211112233333 34688998887653    12344445


Q ss_pred             HHhh
Q 043853          181 DYLC  184 (222)
Q Consensus       181 ~~l~  184 (222)
                      ..+.
T Consensus       231 ~ef~  234 (257)
T 3tos_A          231 RKVL  234 (257)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            5554

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.17  E-value=0.061  Score=48.95  Aligned_cols=104  Identities=19%  Similarity=0.129  Sum_probs=63.7

Q ss_pred             CCeEEEEecccchhHHHHhhc----------C----CeEEEEeCCH---HHHHHHH-----------HHHHHc-----CC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW----------V----KHVYGYEVVP---QAISDAC-----------RNAKLN-----NI  114 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~----------~----~~v~gvD~~~---~~i~~a~-----------~n~~~~-----~~  114 (222)
                      .-+|+|+|-|+|...+...+.          .    -+++++|..|   ..+..|-           +.+...     |+
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            468999999999988855432          1    2689999944   4443322           111111     11


Q ss_pred             -----C----cEEEEeCchhchhhhcCCC-CCCCcEEEECCCCC-----CccHHHHHHHHh-CCCCcEEEEee
Q 043853          115 -----S----NATFVQGDLNKIGGDFGNA-FPKPDIVISDPNRP-----GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       115 -----~----~v~~~~~d~~~~~~~~~~~-~~~fD~ii~~pp~~-----~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                           +    .+++..||+.+....+... ...+|.++.|+...     -....+...+.. +++++.+...+
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                 1    3788999998887765311 24799999997421     123566666655 46666655333

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.10  E-value=0.22  Score=34.79  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=55.3

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +++|+=+|+  |.++..+    ++.+.+++.+|.++..++.+++.   .   ++.++.+|..+...-.......+|+|+.
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c---CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            457877776  5555433    34466899999998877655432   1   2456777764432110011236899998


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      ..|.......+...++.++++.++....++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~  105 (140)
T 1lss_A           76 VTGKEEVNLMSSLLAKSYGINKTIARISEI  105 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred             eeCCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence            876433223344455556766655544333

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.00  E-value=0.15  Score=39.20  Aligned_cols=94  Identities=18%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             EEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           71 VLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        71 vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      |+=+|+  |.++..+++    .+.+++.+|.+++.++...+.   .   ++.++.+|..+...-........|++++..+
T Consensus         3 iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   74 (218)
T 3l4b_C            3 VIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L---KATIIHGDGSHKEILRDAEVSKNDVVVILTP   74 (218)
T ss_dssp             EEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S---SSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred             EEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c---CCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence            444554  666655543    466999999999988765432   1   3678999987642111111247899988776


Q ss_pred             CCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853          147 RPGMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       147 ~~~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      .......+....+.+.+...++.-.+
T Consensus        75 ~d~~n~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           75 RDEVNLFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             CHHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             CcHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            43332233334444455555554443

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=94.82  E-value=0.04  Score=46.27  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=49.2

Q ss_pred             CCCeEEEEecccchhHHHHhhc----------------CC--eEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhch
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW----------------VK--HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKI  127 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~----------------~~--~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~  127 (222)
                      +.-+|+|+||++|..++.+...                .+  +|+..|+-......+-+.+....-. +-.++.+....+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3467999999999988755432                12  7889999888888777665432110 234555544443


Q ss_pred             hhhcCCCCCCCcEEEECC
Q 043853          128 GGDFGNAFPKPDIVISDP  145 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~p  145 (222)
                      -..+- +.+.+|+++++-
T Consensus       131 y~rlf-p~~S~d~v~Ss~  147 (359)
T 1m6e_X          131 YGRLF-PRNTLHFIHSSY  147 (359)
T ss_dssp             SSCCS-CTTCBSCEEEES
T ss_pred             hhccC-CCCceEEEEehh
Confidence            32222 235799998864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.76  E-value=0.29  Score=40.24  Aligned_cols=57  Identities=21%  Similarity=0.209  Sum_probs=39.4

Q ss_pred             cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc----------------cHHHHHHH-HhCCCCcEEEEeeCcc
Q 043853          116 NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM----------------HMKLIKFL-LKLKAPRIVYVSCNPA  174 (222)
Q Consensus       116 ~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~----------------~~~~~~~l-~~l~~~~~v~~~~~~~  174 (222)
                      ...++++|..+....+.  .+.||+|++|||+...                ...++..+ +.|+++|.+++.++..
T Consensus        14 ~~~ii~gD~~~~l~~l~--~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           14 NGSMYIGDSLELLESFP--EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SEEEEESCHHHHGGGSC--SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CceEEeCcHHHHHhhCC--CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            48899999988765443  3579999999996432                22333333 3378999999887643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.64  E-value=0.13  Score=43.90  Aligned_cols=97  Identities=11%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ..+|+=+|+|  .++..+    ...+..++.+|.+++.++.+++    .   ++.++.+|+.+...-........|+|++
T Consensus         4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~---g~~vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T---TCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C---CCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence            4567777775  444433    3446799999999999988864    2   3568999987753211112347899988


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      ..+.......+...++.+.|...++.-...
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            776544445556666677787666655544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.34  E-value=0.1  Score=42.34  Aligned_cols=56  Identities=11%  Similarity=0.107  Sum_probs=37.6

Q ss_pred             cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc---------------H-------HHHHHH-HhCCCCcEEEEeeC
Q 043853          116 NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH---------------M-------KLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       116 ~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~---------------~-------~~~~~l-~~l~~~~~v~~~~~  172 (222)
                      .++++++|+.+....+.  .+.||+|++|||+....               .       .++..+ +.|+++|.+++...
T Consensus        21 ~~~i~~gD~~~~l~~l~--~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           21 VHRLHVGDAREVLASFP--EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             CEEEEESCHHHHHTTSC--TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEECcHHHHHhhCC--CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            47999999998765443  25799999999964210               1       122222 23789999988876


Q ss_pred             c
Q 043853          173 P  173 (222)
Q Consensus       173 ~  173 (222)
                      .
T Consensus        99 d   99 (297)
T 2zig_A           99 D   99 (297)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=93.87  E-value=0.24  Score=41.75  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=17.8

Q ss_pred             CCCeEEEEecccchhHHHHhh
Q 043853           67 GSEIVLDLFCGTGTIGLTLAR   87 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~   87 (222)
                      +..+|+|+|||+|..++.++.
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~   72 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIID   72 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHH
Confidence            357899999999999997754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.42  E-value=0.48  Score=38.94  Aligned_cols=58  Identities=10%  Similarity=-0.053  Sum_probs=39.9

Q ss_pred             EEEE-eCchhchhhhcCCCCCCCcEEEECCCCCCc-------------cHHHHHH-HHhCCCCcEEEEeeCccch
Q 043853          117 ATFV-QGDLNKIGGDFGNAFPKPDIVISDPNRPGM-------------HMKLIKF-LLKLKAPRIVYVSCNPATC  176 (222)
Q Consensus       117 v~~~-~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-------------~~~~~~~-l~~l~~~~~v~~~~~~~~~  176 (222)
                      .+++ ++|..+....+.  .+.+|+|++|||+...             ....+.. .+.++++|.+++.++....
T Consensus        39 ~~l~i~gD~l~~L~~l~--~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~  111 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAKLP--DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQ  111 (319)
T ss_dssp             EEEEEECCHHHHHHTSC--TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCC
T ss_pred             ceEEECCcHHHHHHhCc--cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccc
Confidence            6788 999988876543  2479999999996432             1222233 2337899999998875433

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.40  E-value=0.051  Score=42.57  Aligned_cols=76  Identities=13%  Similarity=0.027  Sum_probs=45.6

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      ..+++|++||.|+ +  +.+.+-++             +.|.     +...++.+|+.++..........+|+++..||.
T Consensus        33 ~~~vidLFaGig~-G--l~~aGf~~-------------~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~DlliGG~PC   91 (230)
T 2qrv_B           33 PVRVLSLFEDIKK-E--LTSLGFLE-------------SGSD-----PGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPP   91 (230)
T ss_dssp             CCCEEEESSCCTT-T--TTTTTSCC-----------------------CCEEEESCCTTCCHHHHHHTCCCSEEEEECCC
T ss_pred             CceEEEeccChhH-H--HHHCCCch-------------hhcC-----CCCcEecCChhhCCHhHhcccCCCCEEEECCCC
Confidence            4579999999886 2  23333232             1222     223467899988753211111369999999994


Q ss_pred             CC---------ccHHHHHHHHhCCCC
Q 043853          148 PG---------MHMKLIKFLLKLKAP  164 (222)
Q Consensus       148 ~~---------~~~~~~~~l~~l~~~  164 (222)
                      .+         +..++.+.+..++|.
T Consensus        92 Q~FS~ag~rg~Lf~ef~Riv~~~rPk  117 (230)
T 2qrv_B           92 LGHTCDRPPSWYLFQFHRLLQYARPK  117 (230)
T ss_dssp             TTTSSCSCTHHHHHHHHHHHHHHCCC
T ss_pred             CcccccCCCchHHHHHHHHHHHHCcC
Confidence            33         556677777777776

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=93.27  E-value=0.14  Score=40.78  Aligned_cols=58  Identities=17%  Similarity=0.196  Sum_probs=38.7

Q ss_pred             EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc----------------cHHHHHHHH-hCCCCcEEEEeeCccch
Q 043853          117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM----------------HMKLIKFLL-KLKAPRIVYVSCNPATC  176 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~----------------~~~~~~~l~-~l~~~~~v~~~~~~~~~  176 (222)
                      .+++++|+.+....+.  .+.||+|++|||+..-                ...+++.+. .++++|.+|+...+...
T Consensus         5 ~~l~~gD~~~~l~~l~--~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~   79 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVE--NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNC   79 (260)
T ss_dssp             SSEEECCHHHHHHHSC--TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHH
T ss_pred             CeEEechHHHHHHhcc--ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHH
Confidence            4688999988776554  2479999999996422                123333333 37899999988654333

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.12  E-value=0.79  Score=36.58  Aligned_cols=78  Identities=18%  Similarity=0.064  Sum_probs=52.6

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch-h------hhcCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-G------GDFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~-~------~~~~~~~~  136 (222)
                      ++++|=.|++ |+++.++    ++.+.+|+.++.++...+.+.+.+...+-.++.++.+|+.+. .      .......+
T Consensus        12 ~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g   90 (311)
T 3o26_A           12 RRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFG   90 (311)
T ss_dssp             CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Confidence            5667766654 5555544    445779999999998888877777665545699999998775 1      11111113


Q ss_pred             CCcEEEECCC
Q 043853          137 KPDIVISDPN  146 (222)
Q Consensus       137 ~fD~ii~~pp  146 (222)
                      ..|++|.+.-
T Consensus        91 ~iD~lv~nAg  100 (311)
T 3o26_A           91 KLDILVNNAG  100 (311)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6899999863

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=92.88  E-value=0.085  Score=44.42  Aligned_cols=76  Identities=12%  Similarity=-0.038  Sum_probs=47.1

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      ..+++|++||.|+ +  +.+.+-++                  ..+.++..++.+|+.++..........+|+|+..||.
T Consensus       189 ~ikvidLFaGiGg-G--l~~aGf~v------------------~~N~~~~~~~~~DI~~i~~~~i~~~~~~DlliGG~PC  247 (386)
T 2pv0_B          189 PVRVLSLFEDIKK-E--LTSLGFLE------------------SGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPP  247 (386)
T ss_dssp             CCCEEEESSCCHH-H--HHHTTSSC------------------SSCCSCSEEEESCCTTCCHHHHHHSCCCSEEEEECCC
T ss_pred             CceeeEEeccCCh-h--HhhcCccH------------------HHcCCCCcEEeCChhhCCHhHhcccCCCCEEEECCCC
Confidence            3579999999995 3  33333332                  1222233567789887753211111369999999983


Q ss_pred             C---------CccHHHHHHHHhCCCC
Q 043853          148 P---------GMHMKLIKFLLKLKAP  164 (222)
Q Consensus       148 ~---------~~~~~~~~~l~~l~~~  164 (222)
                      .         .+..++.+.+..++|.
T Consensus       248 Q~FS~A~~Rg~Lf~ef~Riv~~~rPk  273 (386)
T 2pv0_B          248 LGHTCDRPPSWYLFQFHRLLQYARPK  273 (386)
T ss_dssp             TTTCSCSCTHHHHHHHHHHHHHHSCC
T ss_pred             CcccccCCcchHHHHHHHHHHHhCCC
Confidence            3         3556777777777775

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.72  E-value=0.45  Score=39.62  Aligned_cols=96  Identities=10%  Similarity=-0.010  Sum_probs=56.1

Q ss_pred             CCCCeEEEEeccc-chhHHHHhh-cCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLAR-WVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~-~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||-+|+|. |..++.+++ .+. +|+++|.++..++.+++    .|.+. +.....|+.+...... . +.+|+|
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~-~-gg~D~v  262 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT-D-GGVNFA  262 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-T-SCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc-C-CCCcEE
Confidence            3478999999874 666666665 344 79999999998888864    35542 1111123222222211 1 268998


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +-...   ....+...+..++++|.+.+.
T Consensus       263 id~~g---~~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          263 LESTG---SPEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EECSC---CHHHHHHHHHTEEEEEEEEEC
T ss_pred             EECCC---CHHHHHHHHHHHhcCCEEEEe
Confidence            87543   123344455666777665543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.52  E-value=0.93  Score=32.46  Aligned_cols=102  Identities=7%  Similarity=0.011  Sum_probs=57.2

Q ss_pred             CCeEEEEecccchhHHHHh----hcCCeEEEEeCC-HHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVV-PQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~-~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ..+++=+|+  |.++..++    +.+.+++.+|.+ +..++...+...    .++.++.+|..+...-........|+|+
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            346766665  55555444    346699999997 455544443321    2478899998654211111124689998


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEEeeCccc
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPAT  175 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~  175 (222)
                      +..+.......+...++.+.+...++...+...
T Consensus        77 ~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~  109 (153)
T 1id1_A           77 ALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             ECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             EecCChHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            876643333344444555655555555554433

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=92.51  E-value=0.6  Score=36.08  Aligned_cols=93  Identities=16%  Similarity=0.003  Sum_probs=55.5

Q ss_pred             CCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ..+++=+|+  |.++..+++.    +. ++.+|.++..++.++     .   ++.++.+|..+...-........|.+++
T Consensus         9 ~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S---GANFVHGDPTRVSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T---TCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c---CCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence            457887777  5666655542    34 999999988776554     1   4688999987542111111246899888


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      ..+.......+...++.+.+...++...
T Consensus        78 ~~~~d~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           78 DLESDSETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             CCSCHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             cCCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            7664333333444555567764454444

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.30  E-value=0.85  Score=37.70  Aligned_cols=93  Identities=15%  Similarity=0.077  Sum_probs=56.2

Q ss_pred             CCCeEEEEeccc-chhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCc---hhchhh---hcCCCCCC
Q 043853           67 GSEIVLDLFCGT-GTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGD---LNKIGG---DFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~-G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d---~~~~~~---~~~~~~~~  137 (222)
                      ++++||-.|+|. |..++.+++. +. +|+++|.++...+.+++    .|.+.  ++..+   ..++..   ... . ..
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~~i~~~~-~-~g  242 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADL--VLQISKESPQEIARKVEGQL-G-CK  242 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE--EEECSSCCHHHHHHHHHHHH-T-SC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCE--EEcCcccccchHHHHHHHHh-C-CC
Confidence            478999999863 5666666653 45 89999999988877754    46642  22221   112111   111 1 36


Q ss_pred             CcEEEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          138 PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       138 fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +|+++-...   ....+...+..++++|.+...
T Consensus       243 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          243 PEVTIECTG---AEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CSEEEECSC---CHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEECCC---ChHHHHHHHHHhcCCCEEEEE
Confidence            999987643   223345556667887776543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=92.11  E-value=0.45  Score=43.02  Aligned_cols=106  Identities=17%  Similarity=0.127  Sum_probs=65.5

Q ss_pred             CCeEEEEecccchhHHHHhhc------------CC--eEEEEeC---CHHHHHHHHH-----------HHHHc-----CC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW------------VK--HVYGYEV---VPQAISDACR-----------NAKLN-----NI  114 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~------------~~--~v~gvD~---~~~~i~~a~~-----------n~~~~-----~~  114 (222)
                      .-+|+|+|-|+|...+...+.            ..  +++++|.   +++.+..+-.           .....     ++
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            458999999999988744321            11  6899999   7776663322           22211     11


Q ss_pred             ---------CcEEEEeCchhchhhhcCCC-CCCCcEEEECCCCC-----CccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          115 ---------SNATFVQGDLNKIGGDFGNA-FPKPDIVISDPNRP-----GMHMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       115 ---------~~v~~~~~d~~~~~~~~~~~-~~~fD~ii~~pp~~-----~~~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                               -.+++..+|+.+....+... ...||+++.|+...     -....+...+.. +++++.+...+..
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~  221 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA  221 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence                     12678889998887765311 24799999997421     123555566655 5677776644444

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=91.88  E-value=0.55  Score=38.51  Aligned_cols=95  Identities=11%  Similarity=-0.051  Sum_probs=56.7

Q ss_pred             CCCCeEEEEeccc-chhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++++||-.|+|. |..++.+++. +.+|+++|.+++..+.+++    .|.+. +.....|..+......   +.+|+++
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~---g~~d~vi  237 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKEI---GGAHGVL  237 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHH---SSEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHhC---CCCCEEE
Confidence            3578899899863 6667766663 5699999999998887754    46542 1111223322222111   2689888


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      -...   ....+...+..++++|.+.+.
T Consensus       238 d~~g---~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          238 VTAV---SPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             ESSC---CHHHHHHHHHHEEEEEEEEEC
T ss_pred             EeCC---CHHHHHHHHHHhccCCEEEEe
Confidence            7643   223444455556777665543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=91.50  E-value=0.65  Score=38.08  Aligned_cols=92  Identities=17%  Similarity=0.038  Sum_probs=55.9

Q ss_pred             CeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           69 EIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .+++=+|+  |.++..+++    .+. ++.+|.+++.++ +++       .++.++.+|+.+...-........|.+++.
T Consensus       116 ~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-------~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~  184 (336)
T 1lnq_A          116 RHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR-------SGANFVHGDPTRVSDLEKANVRGARAVIVD  184 (336)
T ss_dssp             CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-------TTCEEEESCTTSHHHHHHTCSTTEEEEEEC
T ss_pred             CCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-------CCcEEEEeCCCCHHHHHhcChhhccEEEEc
Confidence            46777775  566665553    345 999999998887 553       247899999876532111123478888886


Q ss_pred             CCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          145 PNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      .+...........++.+.+...++...
T Consensus       185 ~~~d~~n~~~~~~ar~~~~~~~iiar~  211 (336)
T 1lnq_A          185 LESDSETIHCILGIRKIDESVRIIAEA  211 (336)
T ss_dssp             CSSHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred             CCccHHHHHHHHHHHHHCCCCeEEEEE
Confidence            653322233344455566764555444

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.39  E-value=0.41  Score=34.51  Aligned_cols=99  Identities=14%  Similarity=0.068  Sum_probs=55.9

Q ss_pred             CCCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-CCCCCcEE
Q 043853           67 GSEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-AFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~i  141 (222)
                      .+.+|+=+|+|  .++..    +.+.+.+|+.+|.++..++.++.   ..   ++.++.+|..+.. .+.. ....+|+|
T Consensus        18 ~~~~v~IiG~G--~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~---g~~~~~~d~~~~~-~l~~~~~~~ad~V   88 (155)
T 2g1u_A           18 KSKYIVIFGCG--RLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF---SGFTVVGDAAEFE-TLKECGMEKADMV   88 (155)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC---CSEEEESCTTSHH-HHHTTTGGGCSEE
T ss_pred             CCCcEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC---CCcEEEecCCCHH-HHHHcCcccCCEE
Confidence            46789988875  44433    33446699999999876554431   11   2456667754321 1111 12368999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEeeCcc
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA  174 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~  174 (222)
                      +...+.......+...++.+.+...++...+..
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           89 FAFTNDDSTNFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             EECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             EEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            887764433344444555555555565555443

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=91.35  E-value=0.63  Score=38.50  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcC---------------------CCcEEEEeCc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNN---------------------ISNATFVQGD  123 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~---------------------~~~v~~~~~d  123 (222)
                      +...|+.+|||..+....+....+  .++-+|. |+.++.-++.+...+                     -++.+++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            367999999999999998876433  6666666 888888888877652                     1458999999


Q ss_pred             hhch
Q 043853          124 LNKI  127 (222)
Q Consensus       124 ~~~~  127 (222)
                      +.+.
T Consensus       176 L~d~  179 (334)
T 1rjd_A          176 LNDI  179 (334)
T ss_dssp             TTCH
T ss_pred             CCCc
Confidence            9774

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.13  E-value=3.7  Score=32.28  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhh------hcCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      ++++|=.| |+|+++..++    +.+.+|+.++.++..++...+.++..+.+ ++.++.+|+.+...      .......
T Consensus        32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            45666665 5566665544    45679999999988887777767665543 48888899865431      0100113


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      .+|++|.+.
T Consensus       111 ~iD~vi~~A  119 (279)
T 1xg5_A          111 GVDICINNA  119 (279)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689998875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=90.95  E-value=0.99  Score=37.86  Aligned_cols=95  Identities=16%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +..||.++.+-|.+++.++...  ++.+.=|-..-..++.|+..|+++.  +++...  .+-      ....+|+++.-.
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~~--~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~------~~~~~~~v~~~l  108 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEHK--PYSIGDSYISELATRENLRLNGIDESSVKFLDS--TAD------YPQQPGVVLIKV  108 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGGC--CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSC------CCSSCSEEEEEC
T ss_pred             CCCEEEECCCCCHHHHhhccCC--ceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccc------cccCCCEEEEEc
Confidence            4679999999999999988643  3445447777788899999999864  555322  111      114799998887


Q ss_pred             CCC-CccHHHHHHH-HhCCCCcEEEEeeC
Q 043853          146 NRP-GMHMKLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       146 p~~-~~~~~~~~~l-~~l~~~~~v~~~~~  172 (222)
                      |+. ......+..+ ..+.++..+++...
T Consensus       109 pk~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          109 PKTLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             CSCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence            754 2222233333 33677777765553

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=90.62  E-value=1.6  Score=36.79  Aligned_cols=58  Identities=16%  Similarity=-0.025  Sum_probs=37.2

Q ss_pred             HHHHHHHHhcCCC-CCCCeEEEEecccchhHHHHhhc---------CCeEEEEeCCHHHHHHHHHHHH
Q 043853           53 LYKLIEDCAGLRD-DGSEIVLDLFCGTGTIGLTLARW---------VKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        53 ~~~~i~~~~~~~~-~~~~~vlDlg~G~G~~~~~la~~---------~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      +..++.+.....+ +..-.|+|+|+|+|.++.-+.+.         ..+++-||+||...+.=++.+.
T Consensus        65 la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           65 LGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             HHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            3445444333222 22347999999999998744321         1279999999988876555543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=90.43  E-value=1.4  Score=34.90  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=55.3

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      +++.+|=-|++.|.   .+..+++.+.+|+.+|.+++.++.+.+.++..+. ++.++.+|+.+...      ......++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            36777777766654   2335566788999999999999998888887765 58889999865431      11112247


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.|.
T Consensus        85 iDiLVNNA   92 (254)
T 4fn4_A           85 IDVLCNNA   92 (254)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            99999874

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.36  E-value=0.77  Score=36.44  Aligned_cols=78  Identities=14%  Similarity=0.042  Sum_probs=54.8

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~  137 (222)
                      +++++|=-|++.|.   .+..+++.+.+|+.+|.+++.++.+.+.+...+. ++..+.+|+.+..      .......++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            36777777766554   2335556688999999999999888888877665 5888888885542      112223457


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.|.
T Consensus        87 iDiLVNNA   94 (255)
T 4g81_D           87 VDILINNA   94 (255)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECC
Confidence            99999885

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=90.26  E-value=2.1  Score=35.20  Aligned_cols=97  Identities=10%  Similarity=-0.024  Sum_probs=55.5

Q ss_pred             CCCeEEEEeccc-chhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEe-CchhchhhhcCC--CCCCCcE
Q 043853           67 GSEIVLDLFCGT-GTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQ-GDLNKIGGDFGN--AFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~-G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~-~d~~~~~~~~~~--~~~~fD~  140 (222)
                      ++++||-.|+|. |..++.+++ .+.+|+++|.+++..+.+++    .|.+. +.... .+..+-......  ....+|+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~  243 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSAIGDLPNV  243 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhccccCCCCCE
Confidence            478999999763 555556665 35589999999998887764    46642 11110 222111111100  0136999


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ++-...   ....+...+..++++|.+...
T Consensus       244 vid~~g---~~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          244 TIDCSG---NEKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             EEECSC---CHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCC---CHHHHHHHHHHHhcCCEEEEE
Confidence            987653   122345556667887766543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=90.23  E-value=0.92  Score=33.88  Aligned_cols=95  Identities=13%  Similarity=-0.017  Sum_probs=53.8

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe--CchhchhhhcCCCCCCCcE
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ--GDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~fD~  140 (222)
                      .++++||-.|+  |.|.....+++ .+.+|+++|.+++..+.+++    .+.+. .+..  .+..+...... ....+|+
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~~-~~d~~~~~~~~~~~~~~-~~~~~D~  110 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVEY-VGDSRSVDFADEILELT-DGYGVDV  110 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCSE-EEETTCSTHHHHHHHHT-TTCCEEE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCE-EeeCCcHHHHHHHHHHh-CCCCCeE
Confidence            35789999984  44555554443 46799999999887776643    35432 1211  12211111111 1136999


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ++.+..    ...+...+..++++|.+...
T Consensus       111 vi~~~g----~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          111 VLNSLA----GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             EEECCC----THHHHHHHHTEEEEEEEEEC
T ss_pred             EEECCc----hHHHHHHHHHhccCCEEEEE
Confidence            997652    23445555667777766543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=89.68  E-value=1.1  Score=35.02  Aligned_cols=77  Identities=17%  Similarity=0.158  Sum_probs=49.4

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCch--hchh------hhcCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL--NKIG------GDFGNAF  135 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~--~~~~------~~~~~~~  135 (222)
                      ++++|=.|++ |+++.    .+++.+.+|+.++.++..++.+.+.+...+..++.++..|+  .+..      .......
T Consensus        12 ~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (252)
T 3f1l_A           12 DRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNY   90 (252)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhC
Confidence            5677766654 55554    44455779999999998888777766554433577888887  3321      1111122


Q ss_pred             CCCcEEEECC
Q 043853          136 PKPDIVISDP  145 (222)
Q Consensus       136 ~~fD~ii~~p  145 (222)
                      +..|+++.+.
T Consensus        91 g~id~lv~nA  100 (252)
T 3f1l_A           91 PRLDGVLHNA  100 (252)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            3789999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.63  E-value=2.8  Score=32.93  Aligned_cols=88  Identities=13%  Similarity=0.025  Sum_probs=59.1

Q ss_pred             CeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           69 EIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++||=.||  |.++..+++    .+.+|++++.++........       .+++++.+|+.++.      ...+|+||..
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~------~~~~d~vi~~   70 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS------LDGVTHLLIS   70 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC------CTTCCEEEEC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc------cCCCCEEEEC
Confidence            57999994  888776654    46699999998765443332       25899999998843      2468999887


Q ss_pred             CCCC----CccHHHHHHHHh--CCCCcEEEEee
Q 043853          145 PNRP----GMHMKLIKFLLK--LKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~----~~~~~~~~~l~~--l~~~~~v~~~~  171 (222)
                      ....    .....+++.+..  .+...++|+|+
T Consensus        71 a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           71 TAPDSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             CCccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            6421    122455566655  34467888886

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.43  E-value=2.1  Score=33.51  Aligned_cols=77  Identities=14%  Similarity=0.115  Sum_probs=52.8

Q ss_pred             CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCCC
Q 043853           68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPKP  138 (222)
Q Consensus        68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f  138 (222)
                      ++++|=.|++.|.   ++..+++.+.+|+.++.++..++.+.+.+...+. ++.++.+|+.+...      ......+..
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   89 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAYGRV   89 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            6678877765543   2234555678999999999988888887776553 58899999866431      111122478


Q ss_pred             cEEEECC
Q 043853          139 DIVISDP  145 (222)
Q Consensus       139 D~ii~~p  145 (222)
                      |+++.+.
T Consensus        90 d~lv~nA   96 (264)
T 3ucx_A           90 DVVINNA   96 (264)
T ss_dssp             SEEEECC
T ss_pred             cEEEECC
Confidence            9999875

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=89.17  E-value=1.1  Score=34.50  Aligned_cols=77  Identities=12%  Similarity=0.117  Sum_probs=50.3

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCch--hch------hhhcCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL--NKI------GGDFGNAF  135 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~--~~~------~~~~~~~~  135 (222)
                      ++++|=.|+ +|+++..+    ++.+.+|+.++.++..++.+.+.++..+..++.++..|+  .+.      ........
T Consensus        14 ~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~   92 (247)
T 3i1j_A           14 GRVILVTGA-ARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF   92 (247)
T ss_dssp             TCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence            566776665 45555544    445779999999999998888888776655577777766  221      11111111


Q ss_pred             CCCcEEEECC
Q 043853          136 PKPDIVISDP  145 (222)
Q Consensus       136 ~~fD~ii~~p  145 (222)
                      +..|++|.+.
T Consensus        93 g~id~lv~nA  102 (247)
T 3i1j_A           93 GRLDGLLHNA  102 (247)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            3689999875

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=89.07  E-value=1.3  Score=33.56  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=57.7

Q ss_pred             eEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           70 IVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +||=.| |+|.++..+++    .+.+|++++.++...+.         ..+++++.+|+.+....+......+|+||.+.
T Consensus         2 ~ilItG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a   71 (219)
T 3dqp_A            2 KIFIVG-STGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ---------YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVS   71 (219)
T ss_dssp             EEEEES-TTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC---------CTTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred             eEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCccchhh---------cCCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence            455444 67887776654    35699999998653221         14699999999872222222234699999876


Q ss_pred             CCC-------Cc--cHHHHHHHHhCCCCcEEEEeeC
Q 043853          146 NRP-------GM--HMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       146 p~~-------~~--~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      ...       ..  ...+++.+.....+.++++++.
T Consensus        72 g~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  107 (219)
T 3dqp_A           72 GSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTI  107 (219)
T ss_dssp             CCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             cCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            421       11  2355666655556688888873

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=88.88  E-value=1  Score=37.53  Aligned_cols=95  Identities=19%  Similarity=0.053  Sum_probs=55.6

Q ss_pred             CCCeEEEEeccc-chhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhh---cCCCCCCCc
Q 043853           67 GSEIVLDLFCGT-GTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGD---FGNAFPKPD  139 (222)
Q Consensus        67 ~~~~vlDlg~G~-G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~---~~~~~~~fD  139 (222)
                      ++++||=.|+|. |..++.+|+. +. +|+++|.++...+.+++    .|.+. +.....|+.+....   +. . +.+|
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~-~-gg~D  255 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLV-P-GGVD  255 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSS-T-TCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhcc-C-CCCC
Confidence            478898898753 5555566653 44 89999999998887765    45542 11112333222221   11 1 2699


Q ss_pred             EEEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ++|-..   +....+...+..++++|.+.+.
T Consensus       256 vvid~~---G~~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          256 VVIECA---GVAETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EEEECS---CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECC---CCHHHHHHHHHHhccCCEEEEE
Confidence            998753   2223444555566777766543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=88.85  E-value=2.1  Score=29.67  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=53.5

Q ss_pred             CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-CCCCCcEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-AFPKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~ii  142 (222)
                      .++|+=+|+  |.++..++    +.+.+++.+|.++..++.+++    .   ...++.+|..+.. .+.. ....+|+++
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~---~~~~~~~d~~~~~-~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y---ATHAVIANATEEN-ELLSLGIRNFEYVI   75 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----T---CSEEEECCTTCHH-HHHTTTGGGCSEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h---CCEEEEeCCCCHH-HHHhcCCCCCCEEE
Confidence            456888886  55555443    345689999999876554332    1   2356677765431 1111 123689999


Q ss_pred             ECCCCC-CccHHHHHHHHhCCCCcEEEEeeC
Q 043853          143 SDPNRP-GMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       143 ~~pp~~-~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      ...+.. .....+...++.+.+..++....+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~  106 (144)
T 2hmt_A           76 VAIGANIQASTLTTLLLKELDIPNIWVKAQN  106 (144)
T ss_dssp             ECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             ECCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            887643 222344455566677644443433

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=88.56  E-value=0.69  Score=37.96  Aligned_cols=96  Identities=10%  Similarity=0.039  Sum_probs=56.9

Q ss_pred             CCCCeEEEEecc--cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCG--TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G--~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||-.|+|  .|..++.+++ .+.+|+++|.++..++.+++    .|.+. +.....|..+...... ....+|++
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~-~~~g~Dvv  217 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELT-NGIGADAA  217 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHT-TTSCEEEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHh-CCCCCcEE
Confidence            358899999987  5666666655 46699999999888888765    35542 1111122222222211 12369999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +-+..    .......+..++++|.+...
T Consensus       218 id~~g----~~~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          218 IDSIG----GPDGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             EESSC----HHHHHHHHHTEEEEEEEEEC
T ss_pred             EECCC----ChhHHHHHHHhcCCCEEEEE
Confidence            87643    23334445556777766543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=88.26  E-value=0.7  Score=38.10  Aligned_cols=94  Identities=11%  Similarity=0.017  Sum_probs=53.4

Q ss_pred             CCCeEEEEeccc-chhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGT-GTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~-G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++++||=.|+|. |..++.+|+. +. +|+++|.+++.++.+++    .|.+. +.....|..+...... ....+|+++
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t-~g~g~D~v~  240 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGATDIINYKNGDIVEQILKAT-DGKGVDKVV  240 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCCEEECGGGSCHHHHHHHHT-TTCCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCceEEcCCCcCHHHHHHHHc-CCCCCCEEE
Confidence            478899888763 5556666654 44 89999999988887765    35542 1111223322222221 223699998


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEE
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      -.....   ..+...+..++++|.+.
T Consensus       241 d~~g~~---~~~~~~~~~l~~~G~~v  263 (352)
T 3fpc_A          241 IAGGDV---HTFAQAVKMIKPGSDIG  263 (352)
T ss_dssp             ECSSCT---THHHHHHHHEEEEEEEE
T ss_pred             ECCCCh---HHHHHHHHHHhcCCEEE
Confidence            654322   23344444556655544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.08  E-value=3.1  Score=32.04  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=51.9

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|+ +|+++..+    ++.+.+|+.++.++...+...+.++..+. ++.++.+|+.+...      ........
T Consensus         5 ~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            5 EKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            456666664 55555544    45577999999999988888777776654 58899999865421      11112246


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        83 id~li~~A   90 (247)
T 3lyl_A           83 IDILVNNA   90 (247)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999885

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=87.85  E-value=1.5  Score=35.65  Aligned_cols=93  Identities=17%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe---CchhchhhhcCCCCCCCc
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ---GDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~---~d~~~~~~~~~~~~~~fD  139 (222)
                      .++++||-.|+  |.|.....+++ .+.+|+++|.+++.++.+++    .+.+ ..+-.   .++.+.......  ..+|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~~~--~~~d  216 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGFD-AAFNYKTVNSLEEALKKASP--DGYD  216 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS-EEEETTSCSCHHHHHHHHCT--TCEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCc-EEEecCCHHHHHHHHHHHhC--CCCe
Confidence            34789999997  45555555544 46699999999888777733    3443 22221   222222222221  3699


Q ss_pred             EEEECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      +++.+..    ...+...+..++++|.+.+
T Consensus       217 ~vi~~~g----~~~~~~~~~~l~~~G~~v~  242 (333)
T 1v3u_A          217 CYFDNVG----GEFLNTVLSQMKDFGKIAI  242 (333)
T ss_dssp             EEEESSC----HHHHHHHHTTEEEEEEEEE
T ss_pred             EEEECCC----hHHHHHHHHHHhcCCEEEE
Confidence            9988753    1334445555677666543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.66  E-value=4.2  Score=30.95  Aligned_cols=94  Identities=18%  Similarity=0.068  Sum_probs=57.8

Q ss_pred             CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      +++||=.| |+|.++..++    +.+.+|++++.++...+....       .++ +++.+|+.+....   .....|+||
T Consensus        21 ~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~---~~~~~D~vi   89 (236)
T 3e8x_A           21 GMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-------RGASDIVVANLEEDFSH---AFASIDAVV   89 (236)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-------TTCSEEEECCTTSCCGG---GGTTCSEEE
T ss_pred             CCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-------CCCceEEEcccHHHHHH---HHcCCCEEE
Confidence            67777666 5666666554    346799999999776544332       147 8999998722221   224689999


Q ss_pred             ECCCCCC---c----------cHHHHHHHHhCCCCcEEEEeeC
Q 043853          143 SDPNRPG---M----------HMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       143 ~~pp~~~---~----------~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      .+.....   .          ...+++.+...+.+.++++++.
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  132 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV  132 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            8864211   0          1234444444456788888873

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=87.64  E-value=2.8  Score=34.64  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=57.2

Q ss_pred             CCCeEEEEe-cc-cchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLF-CG-TGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg-~G-~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++++||=.| +| .|..++.+|+.  +.+|+++|.+++-++.+++    .|.+.+--...|..+....+  ....+|+++
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~vi~~~~~~~~~v~~~--~~~g~Dvvi  244 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHHVIDHSKPLAAEVAAL--GLGAPAFVF  244 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSEEECTTSCHHHHHHTT--CSCCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCCHHHHHHHh--cCCCceEEE
Confidence            477888888 44 57777777764  6699999999988888764    56542211112222222222  224699888


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      -..   +....+...+..++++|.+.+.
T Consensus       245 d~~---g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          245 STT---HTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             ECS---CHHHHHHHHHHHSCTTCEEEEC
T ss_pred             ECC---CchhhHHHHHHHhcCCCEEEEE
Confidence            753   2222344556667887776644

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=87.63  E-value=2.5  Score=33.01  Aligned_cols=79  Identities=11%  Similarity=0.060  Sum_probs=53.6

Q ss_pred             CCCeEEEEec-ccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853           67 GSEIVLDLFC-GTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        67 ~~~~vlDlg~-G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      .++++|=.|+ |.|.   ++..+++.+.+|+.++.++...+.+.+.++..+..++.++.+|+.+...      ......+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            3567777776 4443   2235566678999999999988888777766554569999999866431      1111113


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      .+|++|.+.
T Consensus       101 ~id~li~~A  109 (266)
T 3o38_A          101 RLDVLVNNA  109 (266)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            689999886

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=87.54  E-value=1.9  Score=35.84  Aligned_cols=91  Identities=12%  Similarity=-0.004  Sum_probs=54.5

Q ss_pred             CCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe-----CchhchhhhcCCCCCCC
Q 043853           67 GSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQ-----GDLNKIGGDFGNAFPKP  138 (222)
Q Consensus        67 ~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~-----~d~~~~~~~~~~~~~~f  138 (222)
                      ++++||=+|+| .|..++.+|+. +. +|+++|.++..++.+++    .|.+.  ++.     .|+.+....+. . +.+
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~i~~~~-~-gg~  264 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVNE--FVNPKDHDKPIQEVIVDLT-D-GGV  264 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCCE--EECGGGCSSCHHHHHHHHT-T-SCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCcE--EEccccCchhHHHHHHHhc-C-CCC
Confidence            47889989886 35566666653 44 89999999988887753    46542  222     22222222222 1 269


Q ss_pred             cEEEECCCCCCccHHHHHHHHhCCCC-cEEE
Q 043853          139 DIVISDPNRPGMHMKLIKFLLKLKAP-RIVY  168 (222)
Q Consensus       139 D~ii~~pp~~~~~~~~~~~l~~l~~~-~~v~  168 (222)
                      |+++-...   ....+...+..++++ |.+.
T Consensus       265 D~vid~~g---~~~~~~~~~~~l~~g~G~iv  292 (378)
T 3uko_A          265 DYSFECIG---NVSVMRAALECCHKGWGTSV  292 (378)
T ss_dssp             SEEEECSC---CHHHHHHHHHTBCTTTCEEE
T ss_pred             CEEEECCC---CHHHHHHHHHHhhccCCEEE
Confidence            99987543   223455566667774 6554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=87.12  E-value=1.1  Score=38.63  Aligned_cols=71  Identities=14%  Similarity=0.101  Sum_probs=47.1

Q ss_pred             CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++|+=+|||  .++..+|+    .+..|+.+|.+++.++.+.+.+      ++..+.||+.+..--.....+..|++++
T Consensus         3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            4567666665  45554443    3458999999999998876643      4788999997753211112247899887


Q ss_pred             CCC
Q 043853          144 DPN  146 (222)
Q Consensus       144 ~pp  146 (222)
                      -.+
T Consensus        75 ~t~   77 (461)
T 4g65_A           75 VTN   77 (461)
T ss_dssp             CCS
T ss_pred             EcC
Confidence            543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=86.94  E-value=2.8  Score=34.72  Aligned_cols=92  Identities=8%  Similarity=-0.000  Sum_probs=54.8

Q ss_pred             CCCeEEEEecc-cchhHHHHhh-cCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-----chhchhhhcCCCCCCC
Q 043853           67 GSEIVLDLFCG-TGTIGLTLAR-WVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQG-----DLNKIGGDFGNAFPKP  138 (222)
Q Consensus        67 ~~~~vlDlg~G-~G~~~~~la~-~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-----d~~~~~~~~~~~~~~f  138 (222)
                      ++++||-+|+| .|..++.+|+ .+. +|+++|.++...+.+++    .|.+.  ++..     |+.+...... . +.+
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~i~~~t-~-gg~  262 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATE--CLNPKDYDKPIYEVICEKT-N-GGV  262 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHT-T-SCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcE--EEecccccchHHHHHHHHh-C-CCC
Confidence            47899999976 3555556665 355 89999999888877754    46542  2221     2222222221 1 269


Q ss_pred             cEEEECCCCCCccHHHHHHHHhCCCC-cEEEE
Q 043853          139 DIVISDPNRPGMHMKLIKFLLKLKAP-RIVYV  169 (222)
Q Consensus       139 D~ii~~pp~~~~~~~~~~~l~~l~~~-~~v~~  169 (222)
                      |+||-...   ....+...+..++++ |.+..
T Consensus       263 Dvvid~~g---~~~~~~~~~~~l~~~~G~iv~  291 (373)
T 1p0f_A          263 DYAVECAG---RIETMMNALQSTYCGSGVTVV  291 (373)
T ss_dssp             SEEEECSC---CHHHHHHHHHTBCTTTCEEEE
T ss_pred             CEEEECCC---CHHHHHHHHHHHhcCCCEEEE
Confidence            99987542   223445556667877 66553

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=86.89  E-value=3.2  Score=34.27  Aligned_cols=93  Identities=14%  Similarity=0.020  Sum_probs=55.1

Q ss_pred             CCCeEEEEe--cccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLF--CGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg--~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++++||-.|  .|.|..++.+++ .+.+|++++.+++.++.+++    .|.+.+ .....|+.+......  ...+|+++
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~--~~g~D~vi  236 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQEY--PEGVDVVY  236 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHC--TTCEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHhc--CCCCCEEE
Confidence            478999999  346767776665 35699999999888887765    455421 111122222222211  13689998


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      -....    ..+...+..++++|.+..
T Consensus       237 d~~g~----~~~~~~~~~l~~~G~iv~  259 (362)
T 2c0c_A          237 ESVGG----AMFDLAVDALATKGRLIV  259 (362)
T ss_dssp             ECSCT----HHHHHHHHHEEEEEEEEE
T ss_pred             ECCCH----HHHHHHHHHHhcCCEEEE
Confidence            76531    344445555676665543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=86.87  E-value=2.3  Score=34.75  Aligned_cols=97  Identities=9%  Similarity=0.011  Sum_probs=56.6

Q ss_pred             CCCCeEEEEeccc-chhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++++||=.|+|. |..++.+++.  +.+|+++|.+++..+.+++    .|.+.+--...|..+...... ....+|+++
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~v~~~t-~g~g~d~v~  244 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADAAVKSGAGAADAIRELT-GGQGATAVF  244 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSEEEECSTTHHHHHHHHH-GGGCEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcCCCcHHHHHHHHh-CCCCCeEEE
Confidence            3578999998863 5566666653  5699999999998887764    466532111122222211111 113689988


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      -...   -...+...+..++++|.+.+.
T Consensus       245 d~~G---~~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          245 DFVG---AQSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             ESSC---CHHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCC---CHHHHHHHHHHHhcCCEEEEE
Confidence            7643   222444555556776665543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=86.83  E-value=7.4  Score=30.18  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=47.3

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHc-CCCcEEEEeCchhchhh------hcCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLN-NISNATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~-~~~~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      ++++|=.|+ +|+++..+    ++.+.+|+.++.++...+.+.+.+... .-.++.++.+|+.+...      ......+
T Consensus         7 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            7 GKLAVVTAG-SSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            456666664 45555544    445779999999988777666555432 11158888899865421      1111223


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                       .|++|.+.
T Consensus        86 -id~lv~~A   93 (260)
T 2z1n_A           86 -ADILVYST   93 (260)
T ss_dssp             -CSEEEECC
T ss_pred             -CCEEEECC
Confidence             89999875

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=86.59  E-value=2.5  Score=35.49  Aligned_cols=98  Identities=10%  Similarity=0.005  Sum_probs=54.5

Q ss_pred             CCCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe---CchhchhhhcCCCCCCCc
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQ---GDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~---~d~~~~~~~~~~~~~~fD  139 (222)
                      .++++||=.|+| .|..++.+|+. +. +|+++|.++...+.+++    .|.+  .++.   .|+.+....+. ....+|
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~i~~~t-~g~g~D  284 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGAD--HVIDPTKENFVEAVLDYT-NGLGAK  284 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS--EEECTTTSCHHHHHHHHT-TTCCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC--EEEcCCCCCHHHHHHHHh-CCCCCC
Confidence            457889889875 24455555653 44 89999999998888865    3554  2232   23322222221 223699


Q ss_pred             EEEECCCCC-CccHHHHHHH-HhCCCCcEEEEe
Q 043853          140 IVISDPNRP-GMHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       140 ~ii~~pp~~-~~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                      ++|-..... .....+.+.+ ..++++|.+.+.
T Consensus       285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            998754321 0122333333 223777766543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=86.51  E-value=12  Score=30.59  Aligned_cols=96  Identities=14%  Similarity=-0.033  Sum_probs=56.3

Q ss_pred             CCCeEEEEeccc-chhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe-----CchhchhhhcCCCCCCC
Q 043853           67 GSEIVLDLFCGT-GTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQ-----GDLNKIGGDFGNAFPKP  138 (222)
Q Consensus        67 ~~~~vlDlg~G~-G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~-----~d~~~~~~~~~~~~~~f  138 (222)
                      ++++||=.|+|. |..++.+|+. +. .|+++|.+++..+.+++. .   ..-+.+..     .|+.+...... ....+
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~---~~~~~~~~~~~~~~~~~~~v~~~t-~g~g~  253 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C---PEVVTHKVERLSAEESAKKIVESF-GGIEP  253 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C---TTCEEEECCSCCHHHHHHHHHHHT-SSCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c---hhcccccccccchHHHHHHHHHHh-CCCCC
Confidence            478888888753 5566666653 44 499999999999998875 1   11133321     12222221111 12469


Q ss_pred             cEEEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          139 DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       139 D~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      |+++-...   -...+...+..++++|.+.+.
T Consensus       254 Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          254 AVALECTG---VESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             SEEEECSC---CHHHHHHHHHHSCTTCEEEEC
T ss_pred             CEEEECCC---ChHHHHHHHHHhcCCCEEEEE
Confidence            99987543   222345566667887776643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=86.30  E-value=1.7  Score=35.49  Aligned_cols=94  Identities=13%  Similarity=-0.007  Sum_probs=55.1

Q ss_pred             CCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++++||-.|+  |.|..++.+++ .+.+|++++.+++..+.+.+   ..|.+. +.....|..+......  ...+|+++
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vi  223 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKREC--PKGIDVFF  223 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHC--TTCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhc--CCCceEEE
Confidence            4889999998  45666666554 45699999999987777632   235532 1111223322222222  13699998


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      -+..    ...+...+..++++|.+.+
T Consensus       224 ~~~g----~~~~~~~~~~l~~~G~iv~  246 (336)
T 4b7c_A          224 DNVG----GEILDTVLTRIAFKARIVL  246 (336)
T ss_dssp             ESSC----HHHHHHHHTTEEEEEEEEE
T ss_pred             ECCC----cchHHHHHHHHhhCCEEEE
Confidence            7643    1344445555677776654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=86.22  E-value=3.3  Score=34.25  Aligned_cols=93  Identities=8%  Similarity=0.030  Sum_probs=54.6

Q ss_pred             CCCCeEEEEeccc-chhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-----chhchhhhcCCCCCC
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQG-----DLNKIGGDFGNAFPK  137 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-----d~~~~~~~~~~~~~~  137 (222)
                      .++++||-.|+|. |..++.+++. +. +|+++|.+++..+.+++    .|.+.  ++..     ++.+...... . ..
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~-~-~g  261 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATE--CVNPQDYKKPIQEVLTEMS-N-GG  261 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHT-T-SC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCce--EecccccchhHHHHHHHHh-C-CC
Confidence            3478999999753 5555566653 44 89999999888887753    45542  2221     2222222221 1 26


Q ss_pred             CcEEEECCCCCCccHHHHHHHHhCCCC-cEEEE
Q 043853          138 PDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYV  169 (222)
Q Consensus       138 fD~ii~~pp~~~~~~~~~~~l~~l~~~-~~v~~  169 (222)
                      +|+++-...   ....+...+..++++ |.+.+
T Consensus       262 ~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~  291 (374)
T 2jhf_A          262 VDFSFEVIG---RLDTMVTALSCCQEAYGVSVI  291 (374)
T ss_dssp             BSEEEECSC---CHHHHHHHHHHBCTTTCEEEE
T ss_pred             CcEEEECCC---CHHHHHHHHHHhhcCCcEEEE
Confidence            999987643   123445556667877 66543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=86.07  E-value=1.9  Score=32.30  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=53.9

Q ss_pred             eEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           70 IVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +||=.| |+|.++..++    +.+.+|++++.++...+...        ++++++.+|+.+.....   ...+|+||...
T Consensus         2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~D~~d~~~~~---~~~~d~vi~~a   69 (221)
T 3ew7_A            2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--------KDINILQKDIFDLTLSD---LSDQNVVVDAY   69 (221)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--------SSSEEEECCGGGCCHHH---HTTCSEEEECC
T ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--------CCCeEEeccccChhhhh---hcCCCEEEECC
Confidence            455444 5666666544    34679999999976544321        45889999998764321   13689998875


Q ss_pred             CCC--C------ccHHHHHHHHhCCCCcEEEEee
Q 043853          146 NRP--G------MHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       146 p~~--~------~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      ...  .      ....+++.+...+.+.++++++
T Consensus        70 g~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS  103 (221)
T 3ew7_A           70 GISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGG  103 (221)
T ss_dssp             CSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred             cCCccccchHHHHHHHHHHHHHhcCCceEEEEec
Confidence            321  1      1134444444444567777765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=86.03  E-value=2.9  Score=34.63  Aligned_cols=93  Identities=9%  Similarity=0.026  Sum_probs=54.8

Q ss_pred             CCCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-----chhchhhhcCCCCCC
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQG-----DLNKIGGDFGNAFPK  137 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-----d~~~~~~~~~~~~~~  137 (222)
                      .++++||-.|+| .|..++.+|+. +. +|+++|.++..++.+++    .|.+.  ++..     ++.+...... . +.
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~-~-~g  262 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGATD--FVNPNDHSEPISQVLSKMT-N-GG  262 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCCE--EECGGGCSSCHHHHHHHHH-T-SC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCce--EEeccccchhHHHHHHHHh-C-CC
Confidence            347899999875 25555566653 44 89999999988887764    45542  2211     2222221111 1 26


Q ss_pred             CcEEEECCCCCCccHHHHHHHHhCCCC-cEEEE
Q 043853          138 PDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYV  169 (222)
Q Consensus       138 fD~ii~~pp~~~~~~~~~~~l~~l~~~-~~v~~  169 (222)
                      +|++|-...   ....+...+..++++ |.+..
T Consensus       263 ~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~  292 (374)
T 1cdo_A          263 VDFSLECVG---NVGVMRNALESCLKGWGVSVL  292 (374)
T ss_dssp             BSEEEECSC---CHHHHHHHHHTBCTTTCEEEE
T ss_pred             CCEEEECCC---CHHHHHHHHHHhhcCCcEEEE
Confidence            999987643   223445556667877 66553

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=85.87  E-value=1.8  Score=35.94  Aligned_cols=91  Identities=18%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             CCCCeEEEEeccc-chhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++++||-.|+|. |..++.+|+ .+.+|+++|.++..++.+++    .|.+.  ++..+-.++.....   ..+|++|-
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~---~g~Dvvid  263 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGADE--VVNSRNADEMAAHL---KSFDFILN  263 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCSE--EEETTCHHHHHTTT---TCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCcE--EeccccHHHHHHhh---cCCCEEEE
Confidence            3578999999863 556666665 35689999999988888765    35542  22221112222211   36899887


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEE
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      .......   +...+..++++|.+.
T Consensus       264 ~~g~~~~---~~~~~~~l~~~G~iv  285 (369)
T 1uuf_A          264 TVAAPHN---LDDFTTLLKRDGTMT  285 (369)
T ss_dssp             CCSSCCC---HHHHHTTEEEEEEEE
T ss_pred             CCCCHHH---HHHHHHHhccCCEEE
Confidence            6542222   233344456665544

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=85.73  E-value=0.9  Score=36.58  Aligned_cols=77  Identities=23%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|+ +|+++..    +++.+.+|+.++.++..++.+.+.+...+..++.++.+|+.+...      ......+.
T Consensus        41 ~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           41 ARSVLVTGG-TKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            566666665 4555544    445577999999998887777776665554468999999876421      11111236


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|++|.+.
T Consensus       120 iD~lvnnA  127 (293)
T 3rih_A          120 LDVVCANA  127 (293)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=85.70  E-value=3.2  Score=34.28  Aligned_cols=93  Identities=8%  Similarity=-0.004  Sum_probs=54.9

Q ss_pred             CCCCeEEEEeccc-chhHHHHhh-cCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe-----CchhchhhhcCCCCCC
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLAR-WVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQ-----GDLNKIGGDFGNAFPK  137 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~-~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~-----~d~~~~~~~~~~~~~~  137 (222)
                      .++++||-.|+|. |..++.+|+ .+. +|+++|.+++..+.+++    .|.+.  ++.     .|+.+...... . ..
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~v~~~~-~-~g  260 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATE--CINPQDFSKPIQEVLIEMT-D-GG  260 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHHHHT-T-SC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCce--EeccccccccHHHHHHHHh-C-CC
Confidence            3478999998752 555555555 355 89999999988888764    35542  222     12222222221 1 26


Q ss_pred             CcEEEECCCCCCccHHHHHHHHhCCCC-cEEEE
Q 043853          138 PDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYV  169 (222)
Q Consensus       138 fD~ii~~pp~~~~~~~~~~~l~~l~~~-~~v~~  169 (222)
                      +|+++-...   ....+...+..++++ |.+.+
T Consensus       261 ~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~  290 (373)
T 2fzw_A          261 VDYSFECIG---NVKVMRAALEACHKGWGVSVV  290 (373)
T ss_dssp             BSEEEECSC---CHHHHHHHHHTBCTTTCEEEE
T ss_pred             CCEEEECCC---cHHHHHHHHHhhccCCcEEEE
Confidence            999987643   223445556667877 66553

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=85.32  E-value=8.8  Score=31.26  Aligned_cols=100  Identities=18%  Similarity=0.196  Sum_probs=60.3

Q ss_pred             CCeEEEEecccchhHHHHh----hc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      +++||=. .|+|.++..++    +. +. +|++++.++.......+.+.   ..+++++.+|+.+...- ......+|+|
T Consensus        21 ~k~vlVT-GatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l-~~~~~~~D~V   95 (344)
T 2gn4_A           21 NQTILIT-GGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN---DPRMRFFIGDVRDLERL-NYALEGVDIC   95 (344)
T ss_dssp             TCEEEEE-TTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC---CTTEEEEECCTTCHHHH-HHHTTTCSEE
T ss_pred             CCEEEEE-CCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc---CCCEEEEECCCCCHHHH-HHHHhcCCEE
Confidence            5667754 46787776554    34 55 99999999876655544332   23589999998765321 1011368999


Q ss_pred             EECCCCCCcc-----------------HHHHHHHHhCCCCcEEEEeeC
Q 043853          142 ISDPNRPGMH-----------------MKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       142 i~~pp~~~~~-----------------~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      |.........                 ..+++.+.....+.++++|+.
T Consensus        96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~  143 (344)
T 2gn4_A           96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD  143 (344)
T ss_dssp             EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred             EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence            9876422210                 123333444456688888874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=85.22  E-value=3.3  Score=34.32  Aligned_cols=93  Identities=8%  Similarity=-0.021  Sum_probs=54.6

Q ss_pred             CCCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe-----CchhchhhhcCCCCCC
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQ-----GDLNKIGGDFGNAFPK  137 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~-----~d~~~~~~~~~~~~~~  137 (222)
                      .++++||-.|+| .|..++.+|+. +. +|+++|.+++..+.+++    .|.+.  ++.     .|+.+...... . ..
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~v~~~~-~-~g  265 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATD--CLNPRELDKPVQDVITELT-A-GG  265 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHH-T-SC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCcE--EEccccccchHHHHHHHHh-C-CC
Confidence            347899999976 35555566653 44 89999999888877753    46542  221     12222221111 1 26


Q ss_pred             CcEEEECCCCCCccHHHHHHHHhCCCC-cEEEE
Q 043853          138 PDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYV  169 (222)
Q Consensus       138 fD~ii~~pp~~~~~~~~~~~l~~l~~~-~~v~~  169 (222)
                      +|++|-...   ....+...+..++++ |.+.+
T Consensus       266 ~Dvvid~~G---~~~~~~~~~~~l~~~~G~iv~  295 (376)
T 1e3i_A          266 VDYSLDCAG---TAQTLKAAVDCTVLGWGSCTV  295 (376)
T ss_dssp             BSEEEESSC---CHHHHHHHHHTBCTTTCEEEE
T ss_pred             ccEEEECCC---CHHHHHHHHHHhhcCCCEEEE
Confidence            999987542   223445556667877 66543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=85.15  E-value=5.4  Score=32.41  Aligned_cols=98  Identities=9%  Similarity=0.029  Sum_probs=56.1

Q ss_pred             CCCCeEEEEeccc-chhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||=.|+|. |.+++.+++.  ...++++|.+++-++.+++    .|.+. +.....|..+....+. ....+|++
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~-~~~g~d~v  233 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLR-ELRFNQLI  233 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHG-GGCSSEEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhc-ccCCcccc
Confidence            4588999998874 3344455553  3478899999988777764    56643 2222233333322211 12357887


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      +-.-   +....+...+..+++++.+.+..
T Consensus       234 ~d~~---G~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          234 LETA---GVPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             EECS---CSHHHHHHHHHHCCTTCEEEECC
T ss_pred             cccc---cccchhhhhhheecCCeEEEEEe
Confidence            7643   22234444566678877766443

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=85.12  E-value=1.8  Score=36.16  Aligned_cols=94  Identities=16%  Similarity=0.056  Sum_probs=54.8

Q ss_pred             CCCCeEEEEecc-cchhHHHHhhc-C-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC------chhchhhhcCCCCC
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLARW-V-KHVYGYEVVPQAISDACRNAKLNNISNATFVQG------DLNKIGGDFGNAFP  136 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~~-~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~------d~~~~~~~~~~~~~  136 (222)
                      .++++||-.|+| .|..++.+|+. + .+|++++.+++.++.+++    .|.+.  ++..      |+.+...... ...
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~v~~~~-~g~  266 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADL--TLNRRETSVEERRKAIMDIT-HGR  266 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHHHHT-TTS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCcE--EEeccccCcchHHHHHHHHh-CCC
Confidence            357899999965 45555666653 5 599999999988887763    46542  2222      2211111111 123


Q ss_pred             CCcEEEECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          137 KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       137 ~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      .+|++|-.....   ..+...+..++++|.+..
T Consensus       267 g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~  296 (380)
T 1vj0_A          267 GADFILEATGDS---RALLEGSELLRRGGFYSV  296 (380)
T ss_dssp             CEEEEEECSSCT---THHHHHHHHEEEEEEEEE
T ss_pred             CCcEEEECCCCH---HHHHHHHHHHhcCCEEEE
Confidence            699998765322   233444555677666553

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=85.07  E-value=1.9  Score=36.19  Aligned_cols=98  Identities=11%  Similarity=-0.020  Sum_probs=55.7

Q ss_pred             CCCCeEEEEeccc-chhHHHHhh-cCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCch-hchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLAR-WVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~-~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||-+|||. |.+++.+|+ .+. +|+++|.++..++.+++    .|.+-+.....|. .+...... ....+|++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~i~~~~~~~~~~~~~~~~-~g~g~Dvv  258 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGFETIDLRNSAPLRDQIDQIL-GKPEVDCG  258 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTCEEEETTSSSCHHHHHHHHH-SSSCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCcEEcCCCcchHHHHHHHHh-CCCCCCEE
Confidence            3488999999864 666776665 355 89999999998887754    4542111111222 11111111 11269999


Q ss_pred             EECCCCCCc-----------cHHHHHHHHhCCCCcEEE
Q 043853          142 ISDPNRPGM-----------HMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       142 i~~pp~~~~-----------~~~~~~~l~~l~~~~~v~  168 (222)
                      |-.......           ...+...+..++++|.+.
T Consensus       259 id~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv  296 (398)
T 2dph_A          259 VDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIG  296 (398)
T ss_dssp             EECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEE
T ss_pred             EECCCCccccccccccccccHHHHHHHHHHHhcCCEEE
Confidence            876532210           123445556667777654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=85.00  E-value=9.7  Score=29.96  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=48.3

Q ss_pred             CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~  137 (222)
                      ++++|=.| |+|+++..+++    .+.+|+.++.++...+.+.+.++..+. ++.++.+|+.+...-      .....+.
T Consensus        44 ~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           44 NKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-ceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            45666555 55666665553    456899999888877766666654443 488888988654211      0011136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      +|++|.+.
T Consensus       122 id~li~~A  129 (285)
T 2c07_A          122 VDILVNNA  129 (285)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=84.91  E-value=1.5  Score=36.05  Aligned_cols=88  Identities=16%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             CCCCeEEEEeccc-chhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++++||-.|+|. |..++.+++ .+.+|+++|.+++..+.+++    .|.+.+  + .+...+    .   ..+|+++-
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~v--~-~~~~~~----~---~~~D~vid  240 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVKHF--Y-TDPKQC----K---EELDFIIS  240 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCSEE--E-SSGGGC----C---SCEEEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCCee--c-CCHHHH----h---cCCCEEEE
Confidence            3578999998763 555566665 35699999999988887754    566532  2 333222    1   16899987


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ......   .+...+..++++|.+.+.
T Consensus       241 ~~g~~~---~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          241 TIPTHY---DLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             CCCSCC---CHHHHHTTEEEEEEEEEC
T ss_pred             CCCcHH---HHHHHHHHHhcCCEEEEE
Confidence            654322   233444455666665543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=84.85  E-value=2  Score=35.09  Aligned_cols=92  Identities=10%  Similarity=-0.023  Sum_probs=52.7

Q ss_pred             CCCeEEEEecc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++++||-.|+| .|..++.+++ .+.+|+++|.++..++.+++    .|.+.+ .....|+.+......   ..+|+++-
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~~---~~~d~vid  236 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKV---GGVHAAVV  236 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHH---SSEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHHh---CCCCEEEE
Confidence            47899999985 3555555554 35699999999998887754    455421 111112221111111   25899987


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEE
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      ...   ....+...+..++++|.+.
T Consensus       237 ~~g---~~~~~~~~~~~l~~~G~~v  258 (339)
T 1rjw_A          237 TAV---SKPAFQSAYNSIRRGGACV  258 (339)
T ss_dssp             SSC---CHHHHHHHHHHEEEEEEEE
T ss_pred             CCC---CHHHHHHHHHHhhcCCEEE
Confidence            643   2233444555566666554

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=84.66  E-value=3.3  Score=32.36  Aligned_cols=77  Identities=18%  Similarity=0.051  Sum_probs=51.8

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|+ +|+++..+    ++.+.+|+.++.++..++.+.+.++..+..++.++.+|+.+...      ......+.
T Consensus        10 ~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A           10 GRSVVVTGG-TKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            566666664 45555544    45577999999999988888777766554468999999866431      11111136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        89 id~lvnnA   96 (262)
T 3pk0_A           89 IDVVCANA   96 (262)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=84.57  E-value=13  Score=29.18  Aligned_cols=74  Identities=8%  Similarity=-0.007  Sum_probs=46.6

Q ss_pred             CeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCCC
Q 043853           69 EIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPKP  138 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f  138 (222)
                      +++|=.|+ +|+++.    .+++.+.+|+.++.++..++.+.+.+...  .++.++.+|+.+...      ......+..
T Consensus        22 k~vlVTGa-s~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGA-TSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK--TRVLPLTLDVRDRAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESST-TTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            46666665 444444    44455779999999988777665554322  358889999865421      111122468


Q ss_pred             cEEEECC
Q 043853          139 DIVISDP  145 (222)
Q Consensus       139 D~ii~~p  145 (222)
                      |++|.+.
T Consensus        99 D~lvnnA  105 (272)
T 2nwq_A           99 RGLINNA  105 (272)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            9999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=84.57  E-value=1.2  Score=36.61  Aligned_cols=93  Identities=11%  Similarity=-0.140  Sum_probs=52.5

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe---CchhchhhhcCCCCCCCc
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ---GDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~---~d~~~~~~~~~~~~~~fD  139 (222)
                      .++++||-.|+  |.|...+.+++ .+.+|+++|.++...+.+++    .+.+. .+-.   .++.+...... .. .+|
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~~-~~d~~~~~~~~~~~~~~~-~~-~~D  240 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGEV-FIDFTKEKDIVGAVLKAT-DG-GAH  240 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCCE-EEETTTCSCHHHHHHHHH-TS-CEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCce-EEecCccHhHHHHHHHHh-CC-CCC
Confidence            35789999998  45666665554 45699999999887776654    35431 1211   12222222111 11 689


Q ss_pred             EEEECCCCCCccHHHHHHHHhCCCCcEEE
Q 043853          140 IVISDPNRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      +++.+..   ....+...+..++++|.+.
T Consensus       241 ~vi~~~g---~~~~~~~~~~~l~~~G~iv  266 (347)
T 2hcy_A          241 GVINVSV---SEAAIEASTRYVRANGTTV  266 (347)
T ss_dssp             EEEECSS---CHHHHHHHTTSEEEEEEEE
T ss_pred             EEEECCC---cHHHHHHHHHHHhcCCEEE
Confidence            9988753   1123333444456666554

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=84.26  E-value=3.9  Score=32.01  Aligned_cols=77  Identities=21%  Similarity=0.185  Sum_probs=50.0

Q ss_pred             CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhh--hcCCCCCCCcE
Q 043853           68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGG--DFGNAFPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~--~~~~~~~~fD~  140 (222)
                      ++++|=.|+ +|+++..    +++.+.+|+.++.++...+.+.+.+...+. ..+.++..|+.+...  ......+..|+
T Consensus        10 ~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A           10 GKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            566776665 4555544    445577999999999888777776665432 247888888865421  11112247899


Q ss_pred             EEECC
Q 043853          141 VISDP  145 (222)
Q Consensus       141 ii~~p  145 (222)
                      ++.+.
T Consensus        89 lv~nA   93 (267)
T 3t4x_A           89 LINNL   93 (267)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=83.96  E-value=2.6  Score=34.48  Aligned_cols=94  Identities=11%  Similarity=0.057  Sum_probs=53.9

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||-.|+  |.|...+.+++ .+.+|++++.++..++.+++    .|.+.+ .....++.+...... ....+|++
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~-~~~~~d~v  239 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLT-GGKGADKV  239 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHT-TTTCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHh-CCCCceEE
Confidence            35789999998  46666666655 45699999999998888764    354321 111112212111111 12369999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEE
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      +-+.. ...   +...+..++++|.+.
T Consensus       240 i~~~g-~~~---~~~~~~~l~~~G~~v  262 (343)
T 2eih_A          240 VDHTG-ALY---FEGVIKATANGGRIA  262 (343)
T ss_dssp             EESSC-SSS---HHHHHHHEEEEEEEE
T ss_pred             EECCC-HHH---HHHHHHhhccCCEEE
Confidence            88764 222   333444456655544

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=83.86  E-value=5.2  Score=31.99  Aligned_cols=76  Identities=18%  Similarity=0.118  Sum_probs=52.0

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~  137 (222)
                      ++++|=.|++ |+++.    .+++.+.+|+.++.++..++.+.+.++..+. ++.++.+|+.+...-      .....+.
T Consensus        31 gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           31 GRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            5677777765 44554    4445577999999999998888877776654 588999998664311      1011136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|++|.+.
T Consensus       109 id~lvnnA  116 (301)
T 3tjr_A          109 VDVVFSNA  116 (301)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999885

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=83.84  E-value=3.9  Score=33.47  Aligned_cols=93  Identities=14%  Similarity=0.050  Sum_probs=52.6

Q ss_pred             CCCeEEEEe-cc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLF-CG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg-~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++++||=.| +| .|..++.+++ .+.+|++++.+++.++.+++    .|.+.+--...|..+.....  ....+|+++-
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~--~~~g~Dvv~d  223 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK----MGADIVLNHKESLLNQFKTQ--GIELVDYVFC  223 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH----HTCSEEECTTSCHHHHHHHH--TCCCEEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCcEEEECCccHHHHHHHh--CCCCccEEEE
Confidence            478888774 33 4555555555 35699999999998888876    35542211112222222222  1236999987


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEE
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      ...   -...+...+..++++|.+.
T Consensus       224 ~~g---~~~~~~~~~~~l~~~G~iv  245 (346)
T 3fbg_A          224 TFN---TDMYYDDMIQLVKPRGHIA  245 (346)
T ss_dssp             SSC---HHHHHHHHHHHEEEEEEEE
T ss_pred             CCC---chHHHHHHHHHhccCCEEE
Confidence            542   1122344555667777664

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=83.79  E-value=5.8  Score=30.94  Aligned_cols=77  Identities=10%  Similarity=-0.065  Sum_probs=51.2

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCcEEEEeCchhchhh------hcCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKL-NNISNATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~-~~~~~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      ++++|=.|++. +++.    .+++.+.+|+.++.++..++.+.+.+.. .+-.++.++.+|+.+...      ......+
T Consensus         8 ~k~~lVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            8 EAVAVVTGGSS-GIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            56777777554 4444    4445677999999999988887777765 443358899999866431      1111113


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.+.
T Consensus        87 ~id~lvnnA   95 (265)
T 3lf2_A           87 CASILVNNA   95 (265)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999885

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=83.61  E-value=2.7  Score=33.25  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|+ +|+++..+    ++.+.+|+.++.++...+...+.+...+  ++.++.+|+.+...      ......+.
T Consensus        29 ~k~vlVTGa-s~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (276)
T 2b4q_A           29 GRIALVTGG-SRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG--DCQAIPADLSSEAGARRLAQALGELSAR  105 (276)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            567776665 55555544    4457799999999887766655554333  58888888865421      11111236


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|++|.+.
T Consensus       106 iD~lvnnA  113 (276)
T 2b4q_A          106 LDILVNNA  113 (276)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=83.56  E-value=2.3  Score=34.66  Aligned_cols=95  Identities=15%  Similarity=0.041  Sum_probs=54.7

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||-.|+  |.|..++.+++ .+.+|++++.+++.++.+++    .|.+. +.....|..+...... ....+|++
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~~-~~~g~D~v  221 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKFT-NGKGVDAS  221 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHT-TTSCEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHHh-CCCCceEE
Confidence            45889999984  35556666655 45699999999988887755    45432 1111122222222211 12369999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      +-+...    ..+...+..++++|.+..
T Consensus       222 id~~g~----~~~~~~~~~l~~~G~iv~  245 (334)
T 3qwb_A          222 FDSVGK----DTFEISLAALKRKGVFVS  245 (334)
T ss_dssp             EECCGG----GGHHHHHHHEEEEEEEEE
T ss_pred             EECCCh----HHHHHHHHHhccCCEEEE
Confidence            876532    234444555666666553

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=83.43  E-value=7.5  Score=25.60  Aligned_cols=79  Identities=16%  Similarity=-0.080  Sum_probs=48.6

Q ss_pred             CCeEEEEecccchhHHHHh----hcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh--hhcCCCCCCCcE
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG--GDFGNAFPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~fD~  140 (222)
                      .++|+=+|+  |.++..++    +.+ .+++++|.++..++.++    .   .++.+...|..+..  ....   ..+|+
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---~~~~~~~~d~~~~~~~~~~~---~~~d~   72 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---MGVATKQVDAKDEAGLAKAL---GGFDA   72 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---TTCEEEECCTTCHHHHHHHT---TTCSE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---CCCcEEEecCCCHHHHHHHH---cCCCE
Confidence            467888888  55555433    345 68999999988776654    1   23567777775432  1111   36899


Q ss_pred             EEECCCCCCccHHHHHHHH
Q 043853          141 VISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~  159 (222)
                      |+...|.. ....+.+...
T Consensus        73 vi~~~~~~-~~~~~~~~~~   90 (118)
T 3ic5_A           73 VISAAPFF-LTPIIAKAAK   90 (118)
T ss_dssp             EEECSCGG-GHHHHHHHHH
T ss_pred             EEECCCch-hhHHHHHHHH
Confidence            99887633 2344444443

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=83.35  E-value=4.4  Score=32.02  Aligned_cols=76  Identities=14%  Similarity=0.177  Sum_probs=50.2

Q ss_pred             CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh--h----cCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG--D----FGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~--~----~~~~~~~  137 (222)
                      ++++|=.| |+|+++..++    +.+.+|++++.++..++...+.+...+..++.++.+|+.+...  .    .....+.
T Consensus        28 ~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           28 GKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            56777666 4566665444    4567999999999888777666665554468899999876421  1    0001136


Q ss_pred             CcEEEEC
Q 043853          138 PDIVISD  144 (222)
Q Consensus       138 fD~ii~~  144 (222)
                      +|++|.+
T Consensus       107 iD~li~n  113 (286)
T 1xu9_A          107 LDMLILN  113 (286)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            8999977

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=83.14  E-value=2.2  Score=34.62  Aligned_cols=96  Identities=16%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||-.|+  |.|..++.+++ .+.+|++++.+++.++.+++    .|.+. +.....|..+...... ....+|++
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~-~~~g~Dvv  213 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELT-DGKKCPVV  213 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-TTCCEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHh-CCCCceEE
Confidence            35789998883  35666665555 46699999999998888764    35432 1111122222222211 12369998


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +-+...    ..+...+..++++|.+.+.
T Consensus       214 id~~g~----~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          214 YDGVGQ----DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             EESSCG----GGHHHHHTTEEEEEEEEEC
T ss_pred             EECCCh----HHHHHHHHHhcCCCEEEEE
Confidence            876532    2344455556776665543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=82.98  E-value=2.9  Score=33.88  Aligned_cols=94  Identities=16%  Similarity=0.044  Sum_probs=53.3

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe--CchhchhhhcCCCCCCCcE
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ--GDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~fD~  140 (222)
                      .++++||-.|+  |.|...+.+++ .+.+|+++|.+++..+.+++    .+.+ ..+-.  .+..+...... ....+|+
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~-~~~~~D~  212 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW-QVINYREEDLVERLKEIT-GGKKVRV  212 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHT-TTCCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-EEEECCCccHHHHHHHHh-CCCCceE
Confidence            35789999983  45555555544 46699999999988887765    2443 21211  12211111111 1136999


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      ++-+..    ...+...+..++++|.+..
T Consensus       213 vi~~~g----~~~~~~~~~~l~~~G~iv~  237 (327)
T 1qor_A          213 VYDSVG----RDTWERSLDCLQRRGLMVS  237 (327)
T ss_dssp             EEECSC----GGGHHHHHHTEEEEEEEEE
T ss_pred             EEECCc----hHHHHHHHHHhcCCCEEEE
Confidence            988753    2334445555666665543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=82.93  E-value=6  Score=30.43  Aligned_cols=76  Identities=16%  Similarity=0.095  Sum_probs=51.3

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|+ +|+++..+    ++.+.+|+.++.++...+.+.+.+...+. ++.++.+|+.+...      ......+.
T Consensus         9 ~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            9 NKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            567776775 45555444    44577999999999988888777766543 58889999866431      11111136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|++|.+.
T Consensus        87 id~li~~A   94 (253)
T 3qiv_A           87 IDYLVNNA   94 (253)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999885

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=82.78  E-value=3.4  Score=32.17  Aligned_cols=75  Identities=11%  Similarity=-0.016  Sum_probs=51.4

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|++. +++.    .+++.+.+|+.++.++..++.+.+.++..+. ++.++.+|+.+...      ..... +.
T Consensus         7 ~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~-g~   83 (252)
T 3h7a_A            7 NATVAVIGAGD-YIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAH-AP   83 (252)
T ss_dssp             SCEEEEECCSS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHH-SC
T ss_pred             CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhh-CC
Confidence            56777666654 4444    4445677999999999888888877776653 58999999866431      11111 36


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        84 id~lv~nA   91 (252)
T 3h7a_A           84 LEVTIFNV   91 (252)
T ss_dssp             EEEEEECC
T ss_pred             ceEEEECC
Confidence            89999875

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=82.57  E-value=2.8  Score=33.10  Aligned_cols=76  Identities=13%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|+ +|+++..    +++.+.+|+.++.++..++.+.+.++..+. ++.++.+|+.+...      ........
T Consensus        26 gk~~lVTGa-s~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           26 GRTALVTGS-SRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TCEEEETTC-SSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            566776664 4555544    445577999999999988888777766554 58889999866431      11112236


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus       104 iD~lv~nA  111 (271)
T 4ibo_A          104 VDILVNNA  111 (271)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=82.49  E-value=2  Score=35.39  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||-.|+  |.|..++.+++ .+.+|++++.+++.++.+++    .|.+. +.....|..+......  ...+|++
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~--~~g~Dvv  239 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET--GQGVDII  239 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH--SSCEEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh--CCCceEE
Confidence            34788888753  35555555555 45699999999998888765    35542 1111222222222111  2369999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      +-....    ..+...+..++++|.+..
T Consensus       240 id~~g~----~~~~~~~~~l~~~G~iv~  263 (353)
T 4dup_A          240 LDMIGA----AYFERNIASLAKDGCLSI  263 (353)
T ss_dssp             EESCCG----GGHHHHHHTEEEEEEEEE
T ss_pred             EECCCH----HHHHHHHHHhccCCEEEE
Confidence            876542    234445555666666543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=82.31  E-value=5.9  Score=30.79  Aligned_cols=76  Identities=11%  Similarity=0.074  Sum_probs=51.3

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|++ |+++.    .+++.+.+|+.+|.++...+.+.+.++..+. ++.++.+|+.+...      ......+.
T Consensus        12 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           12 DAVAIVTGAA-AGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             TCEEEECSCS-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5667766655 44444    4445678999999999888888777776553 58889999866431      11111136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        90 id~lv~nA   97 (256)
T 3gaf_A           90 ITVLVNNA   97 (256)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=82.29  E-value=4.4  Score=32.25  Aligned_cols=90  Identities=17%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             CeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           69 EIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++||=.| |+|.++..+++    .+.+|++++.++...+ .         ++++++.+|+. . ..+......+|+||..
T Consensus         3 ~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~---------~~~~~~~~Dl~-~-~~~~~~~~~~d~Vih~   69 (311)
T 3m2p_A            3 LKIAVTG-GTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I---------NDYEYRVSDYT-L-EDLINQLNDVDAVVHL   69 (311)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCCC---------------CCEEEECCCC-H-HHHHHHTTTCSEEEEC
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C---------CceEEEEcccc-H-HHHHHhhcCCCEEEEc
Confidence            4566444 57777765543    4669999998843322 1         15788999986 3 2221112378999876


Q ss_pred             CCCCCc-------------cHHHHHHHHhCCCCcEEEEee
Q 043853          145 PNRPGM-------------HMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~~~-------------~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      ......             ...+++.+...+.++++|+|+
T Consensus        70 a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           70 AATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             CCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            431111             134555555556667899887

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=82.13  E-value=6.3  Score=34.59  Aligned_cols=70  Identities=13%  Similarity=-0.073  Sum_probs=45.6

Q ss_pred             CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ...++=+|+|  .++..+++    .+..++.+|.+++.++.+++.     . ++.++.+|+.+...-.......+|.+++
T Consensus       127 ~~hviI~G~g--~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~-----~-~~~~i~Gd~~~~~~L~~a~i~~a~~vi~  198 (565)
T 4gx0_A          127 RGHILIFGID--PITRTLIRKLESRNHLFVVVTDNYDQALHLEEQ-----E-GFKVVYGSPTDAHVLAGLRVAAARSIIA  198 (565)
T ss_dssp             CSCEEEESCC--HHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHS-----C-SSEEEESCTTCHHHHHHTTGGGCSEEEE
T ss_pred             CCeEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHh-----c-CCeEEEeCCCCHHHHHhcCcccCCEEEE
Confidence            4567766665  45554443    456899999999988877653     1 4689999996653221122246888888


Q ss_pred             CC
Q 043853          144 DP  145 (222)
Q Consensus       144 ~p  145 (222)
                      .+
T Consensus       199 t~  200 (565)
T 4gx0_A          199 NL  200 (565)
T ss_dssp             CS
T ss_pred             eC
Confidence            43

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=81.93  E-value=6  Score=30.63  Aligned_cols=77  Identities=13%  Similarity=0.095  Sum_probs=50.6

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHc--CCCcEEEEeCchhchhh------hcCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLN--NISNATFVQGDLNKIGG------DFGNAF  135 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~--~~~~v~~~~~d~~~~~~------~~~~~~  135 (222)
                      ++++|=.|++ |+++.    .+++.+.+|+.++.++..++.+.+.+...  +..++.++.+|+.+...      ......
T Consensus         7 ~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            7 KGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            5667766655 44444    44455779999999999888887777654  22458889999866421      111111


Q ss_pred             CCCcEEEECC
Q 043853          136 PKPDIVISDP  145 (222)
Q Consensus       136 ~~fD~ii~~p  145 (222)
                      +..|+++.+.
T Consensus        86 g~iD~lvnnA   95 (250)
T 3nyw_A           86 GAVDILVNAA   95 (250)
T ss_dssp             CCEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            3689998875

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=81.92  E-value=5.4  Score=31.55  Aligned_cols=77  Identities=17%  Similarity=0.169  Sum_probs=49.0

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeC-CHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEV-VPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~-~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      ++++|=.|++ |+++.    .+++.+.+|+.++. ++...+...+.+....-.++.++.+|+.+...      ......+
T Consensus        25 ~k~~lVTGas-~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  103 (281)
T 3v2h_A           25 TKTAVITGST-SGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG  103 (281)
T ss_dssp             TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence            5677777754 44554    44455779999998 67777666666654423358999999866421      1111123


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.+.
T Consensus       104 ~iD~lv~nA  112 (281)
T 3v2h_A          104 GADILVNNA  112 (281)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            789999875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=81.48  E-value=2.8  Score=34.36  Aligned_cols=93  Identities=17%  Similarity=0.032  Sum_probs=53.4

Q ss_pred             CCCeEEEEecc-cchhHHHHhh-cCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC---chhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCG-TGTIGLTLAR-WVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQG---DLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G-~G~~~~~la~-~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~fD~  140 (222)
                      ++++||-+|+| .|..++.+++ .+. +|+++|.++...+.+++    .|.+.  ++..   |+.+...... ....+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~~--~~~~~~~~~~~~v~~~~-~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGADY--VINPFEEDVVKEVMDIT-DGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCSE--EECTTTSCHHHHHHHHT-TTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCE--EECCCCcCHHHHHHHHc-CCCCCCE
Confidence            57899999985 3455555555 355 89999999988887764    35432  2222   2222211111 1236999


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      ++-....   ...+...+..++++|.+..
T Consensus       240 vid~~g~---~~~~~~~~~~l~~~G~iv~  265 (348)
T 2d8a_A          240 FLEFSGA---PKALEQGLQAVTPAGRVSL  265 (348)
T ss_dssp             EEECSCC---HHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            9876531   2334445555666665543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=81.43  E-value=3.1  Score=34.03  Aligned_cols=93  Identities=17%  Similarity=0.089  Sum_probs=54.9

Q ss_pred             CCCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe--CchhchhhhcCCCCCCCcE
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ--GDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~fD~  140 (222)
                      .++++||=.|+  |.|..++.+++ .+.+|++++.+++..+.+++    .|.+.  ++.  .+..+...... ....+|+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~~--v~~~~~~~~~~v~~~~-~~~g~Dv  230 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS----VGADI--VLPLEEGWAKAVREAT-GGAGVDM  230 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCSE--EEESSTTHHHHHHHHT-TTSCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCcE--EecCchhHHHHHHHHh-CCCCceE
Confidence            35889999987  45666666665 35699999999888877765    35542  222  23322222221 1236999


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      ++-.....    .+...+..++++|.+.+
T Consensus       231 vid~~g~~----~~~~~~~~l~~~G~iv~  255 (342)
T 4eye_A          231 VVDPIGGP----AFDDAVRTLASEGRLLV  255 (342)
T ss_dssp             EEESCC------CHHHHHHTEEEEEEEEE
T ss_pred             EEECCchh----HHHHHHHhhcCCCEEEE
Confidence            98765421    23444555666666553

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=81.43  E-value=6.1  Score=30.75  Aligned_cols=76  Identities=13%  Similarity=0.044  Sum_probs=51.5

Q ss_pred             CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~  137 (222)
                      ++++|=.|+ +|+++..++    +.+.+|+.++.++..++.+.+.+...+. ++.++.+|+.+...-      .....+.
T Consensus        29 ~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           29 GQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            567776665 555665444    4577999999999988888777776553 588999998654311      1111136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|++|.+.
T Consensus       107 id~lv~~A  114 (262)
T 3rkr_A          107 CDVLVNNA  114 (262)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=81.27  E-value=10  Score=30.48  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      .++||=.| |+|.++..+++    .+.+|++++.++.........+....    .++++++.+|+.+... +......+|
T Consensus        25 ~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~d  102 (351)
T 3ruf_A           25 PKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT-CEQVMKGVD  102 (351)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH-HHHHTTTCS
T ss_pred             CCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHH-HHHHhcCCC
Confidence            56777555 67777765543    46799999985432211111222111    0368999999876532 111113689


Q ss_pred             EEEECCCCCCc-----------------cHHHHHHHHhCCCCcEEEEee
Q 043853          140 IVISDPNRPGM-----------------HMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~~~~-----------------~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      +||........                 ...+++.+...+.+.++|+|+
T Consensus       103 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS  151 (351)
T 3ruf_A          103 HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS  151 (351)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             EEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence            99877532111                 112444555555668899887

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=81.07  E-value=8.9  Score=31.12  Aligned_cols=97  Identities=7%  Similarity=-0.065  Sum_probs=56.0

Q ss_pred             CCCCeEEEEecccch-hHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFCGTGT-IGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~-~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||=.|+|.++ +++.+++  .+.+|+++|.+++-.+.+++    .|.+. +.....|..+...... ....+|.+
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t-~g~g~d~~  236 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT-GGLGVQSA  236 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT-TSSCEEEE
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc-CCCCceEE
Confidence            347899999998654 4444444  35699999999987766654    45543 3444445443332222 12357777


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +.+..   -...+...+..++++|.+.+.
T Consensus       237 ~~~~~---~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          237 IVCAV---ARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             EECCS---CHHHHHHHHHTEEEEEEEEEC
T ss_pred             EEecc---CcchhheeheeecCCceEEEE
Confidence            76543   223444555556666665433

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=81.04  E-value=8.9  Score=30.44  Aligned_cols=77  Identities=13%  Similarity=0.109  Sum_probs=50.3

Q ss_pred             CCeEEEEecccchhHHHHh----hcCC---eEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhh------hcCC
Q 043853           68 SEIVLDLFCGTGTIGLTLA----RWVK---HVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGG------DFGN  133 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la----~~~~---~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~------~~~~  133 (222)
                      ++++|=.|++ |+++..++    +.+.   +|+.++.++..++.+.+.+.... -.++.++.+|+.+...      ....
T Consensus        33 ~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           33 KKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            5677777755 55554443    3344   89999999998888877776542 2258889999866431      1111


Q ss_pred             CCCCCcEEEECC
Q 043853          134 AFPKPDIVISDP  145 (222)
Q Consensus       134 ~~~~fD~ii~~p  145 (222)
                      ..+..|++|.+.
T Consensus       112 ~~g~iD~lVnnA  123 (287)
T 3rku_A          112 EFKDIDILVNNA  123 (287)
T ss_dssp             GGCSCCEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            224789999875

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=80.90  E-value=6.9  Score=30.86  Aligned_cols=76  Identities=18%  Similarity=0.160  Sum_probs=50.6

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|++ |+++.    .+++.+.+|+.++.++..++.+.+.++..+. ++.++.+|+.+...      ......+.
T Consensus        24 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           24 PQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             -CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5677777754 45554    4445677999999999888888777765543 48899999866431      11111136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|++|.+.
T Consensus       102 id~lv~nA  109 (279)
T 3sju_A          102 IGILVNSA  109 (279)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECC
Confidence            89999875

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=80.80  E-value=8.1  Score=31.19  Aligned_cols=77  Identities=14%  Similarity=0.098  Sum_probs=52.0

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhh------hcCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      ++++|=.|++ |+++.    .+++.+.+|+.++.++..++.+.+.+...+.. ++.++..|+.+...      ......+
T Consensus         8 ~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            8 GRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            5677777765 44444    44455779999999999888888777665542 58999999866421      1111113


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|++|.+.
T Consensus        87 ~id~lv~nA   95 (319)
T 3ioy_A           87 PVSILCNNA   95 (319)
T ss_dssp             CEEEEEECC
T ss_pred             CCCEEEECC
Confidence            689999885

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=80.73  E-value=8.5  Score=30.63  Aligned_cols=77  Identities=9%  Similarity=-0.113  Sum_probs=50.0

Q ss_pred             CCCeEEEEecccc-hhH----HHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCC
Q 043853           67 GSEIVLDLFCGTG-TIG----LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAF  135 (222)
Q Consensus        67 ~~~~vlDlg~G~G-~~~----~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~  135 (222)
                      .++++|=.|++.| +++    ..+++.+.+|+.++.++...+.+++.....+  ++.++.+|+.+...      ......
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            3678888887643 233    3556667899999999776666666555443  47888999866421      111112


Q ss_pred             CCCcEEEECC
Q 043853          136 PKPDIVISDP  145 (222)
Q Consensus       136 ~~fD~ii~~p  145 (222)
                      +..|++|.+.
T Consensus       108 g~iD~lVnnA  117 (293)
T 3grk_A          108 GKLDFLVHAI  117 (293)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            3789999875

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=80.54  E-value=4.8  Score=31.46  Aligned_cols=79  Identities=10%  Similarity=-0.042  Sum_probs=54.6

Q ss_pred             CCCeEEEEeccc--c--h-hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCC
Q 043853           67 GSEIVLDLFCGT--G--T-IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAF  135 (222)
Q Consensus        67 ~~~~vlDlg~G~--G--~-~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~  135 (222)
                      +++++|=-|+++  |  . .+..+++.+.+|+.++.++...+.+.+.++..+-.++.++..|+.+...      ......
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            478888888643  3  2 3345667788999999999888888887776655568888888865421      111122


Q ss_pred             CCCcEEEECC
Q 043853          136 PKPDIVISDP  145 (222)
Q Consensus       136 ~~fD~ii~~p  145 (222)
                      +..|+++.|.
T Consensus        85 G~iD~lvnnA   94 (256)
T 4fs3_A           85 GNIDGVYHSI   94 (256)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCCEEEecc
Confidence            4799998874

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=80.53  E-value=6.6  Score=30.81  Aligned_cols=76  Identities=12%  Similarity=0.047  Sum_probs=50.6

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|++ |+++.    .+++.+.+|+.++.++..++.+.+.++..+. ++.++.+|+.+...      ......+.
T Consensus         4 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            4 DKVILITGAS-GGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4566666655 44444    4445677999999999988888877776553 48888888865421      11111136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        82 iD~lVnnA   89 (264)
T 3tfo_A           82 IDVLVNNA   89 (264)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28

Probab=80.38  E-value=2.7  Score=33.84  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=32.5

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHH
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAI  102 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i  102 (222)
                      +.++...+.   ....+.+|++||+|.++..+..  .+++..|+++..+
T Consensus        25 ~~~i~~~lp---~~~~~yvEpF~GggaV~~~~~~--~~~i~ND~n~~Li   68 (284)
T 2dpm_A           25 LPVIRELIP---KTYNRYFEPFVGGGALFFDLAP--KDAVINDFNAELI   68 (284)
T ss_dssp             HHHHHHHSC---SSCSCEEETTCTTCHHHHHHCC--SEEEEEESCHHHH
T ss_pred             HHHHHHHhc---cccCEEEeecCCccHHHHhhhc--cceeeeecchHHH
Confidence            444555542   1246899999999999887643  5899999999885

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=80.30  E-value=7.7  Score=30.51  Aligned_cols=77  Identities=12%  Similarity=-0.006  Sum_probs=51.5

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhh------hcCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGG------DFGNAF  135 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~------~~~~~~  135 (222)
                      ++++|=.|+ +|+++.    .+++.+.+|+.+|.++...+.+.+.++..+..  ++.++.+|+.+...      ......
T Consensus        11 ~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           11 DRTYLVTGG-GSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            567776665 455554    44455779999999999888887777765542  48899999866431      111111


Q ss_pred             CCCcEEEECC
Q 043853          136 PKPDIVISDP  145 (222)
Q Consensus       136 ~~fD~ii~~p  145 (222)
                      +..|+++.+.
T Consensus        90 g~id~lv~nA   99 (281)
T 3svt_A           90 GRLHGVVHCA   99 (281)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            3689999875

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=80.11  E-value=4.4  Score=32.09  Aligned_cols=77  Identities=13%  Similarity=0.050  Sum_probs=49.7

Q ss_pred             CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|+ +|+++.++    ++.+.+|+.++.++..++.+.+.+...+-..+.++.+|+.+...      ......+.
T Consensus        33 gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  111 (281)
T 4dry_A           33 GRIALVTGG-GTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR  111 (281)
T ss_dssp             -CEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            566666664 45555544    44577999999999888877776655443346889999866431      11111136


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|++|.+.
T Consensus       112 iD~lvnnA  119 (281)
T 4dry_A          112 LDLLVNNA  119 (281)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1uwva2	358	c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransf	4e-49
d1wxxa2	318	c.66.1.51 (A:65-382) Hypothetical protein TTHA1280	4e-16
d2b78a2	317	c.66.1.51 (A:69-385) Hypothetical protein SMu776,	2e-14
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	2e-13
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	1e-12
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	1e-11
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	4e-10
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	5e-10
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	4e-09
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-08
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-07
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	4e-07
d2oyra1	250	c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi	2e-06
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	2e-06
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	9e-06
d1dcta_	324	c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a	1e-05
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	2e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	2e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	4e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	8e-05
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	1e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	2e-04
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	2e-04
d2f8la1	328	c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {	2e-04
d1dusa_	194	c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo	2e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	3e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	4e-04
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	8e-04
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	0.001

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} Length = 358

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

 Score =  162 bits (409), Expect = 4e-49
 Identities = 68/202 (33%), Positives = 96/202 (47%), Gaps = 12/202 (5%)

Query: 19  TLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGT 78
           T+ G+    ++  GL    S   F Q N    + +     +   ++    + VLDLFCG 
Sbjct: 167 TVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ--PEDRVLDLFCGM 223

Query: 79  GTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKP 138
           G   L LA     V G E VP  +    +NA+LN + N TF   +L +       A    
Sbjct: 224 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 283

Query: 139 DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKL 198
           D V+ DP R G    +++ ++KL+  RIVYVSCNPAT ARD + L         K  Y +
Sbjct: 284 DKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL--------KAGYTI 334

Query: 199 KSLQPVDMFPHTPHIECVCLLE 220
             L  +DMFPHT H+E + L  
Sbjct: 335 ARLAMLDMFPHTGHLESMVLFS 356

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

 Score = 73.4 bits (179), Expect = 4e-16
 Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 26/219 (11%)

Query: 14  GEEEYTLYGKSNITETLR----GLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRDDGS 68
           G   Y       + E ++     + + +   +  +T  +         +E   G R    
Sbjct: 93  GLPLYVRPLLGEVPERVQVQEGRVRYLVDLRAGQKTGAYLDQRENRLYMERFRGERAL-- 150

Query: 69  EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
               D+F   G   L LA   + V   +   +A+  A  NA+LN + N   ++ +   + 
Sbjct: 151 ----DVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL 206

Query: 129 GDFGNAFPKPDIVISDPNRPGMHM-----------KLIKFLLKLKAP--RIVYVSCNPAT 175
                   + D+V+ DP                  ++    +KL      +   SC+   
Sbjct: 207 RRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM 266

Query: 176 CARDLDYLCHGVGDQNIKGCYKLKSL-QPVDMFPHTPHI 213
                  +         +    ++   QP D  P   + 
Sbjct: 267 TEPLFYAMVAEAAQDAHRLLRVVEKRGQPFD-HPVLLNH 304

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

 Score = 68.7 bits (167), Expect = 2e-14
 Identities = 35/202 (17%), Positives = 64/202 (31%), Gaps = 27/202 (13%)

Query: 32  GLTFQISANSFFQTNTH--QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLA-RW 88
           G+++ +  N    T     Q +V  +LI   A       + VL+LF  T    +  A   
Sbjct: 112 GISYNVFLNDGLMTGIFLDQRQVRNELINGSAA-----GKTVLNLFSYTAAFSVAAAMGG 166

Query: 89  VKHVYGYEVVPQAISDACRNAKL--NNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146
                  ++  ++ + +  + +    +++N   V  D+              DI+I DP 
Sbjct: 167 AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPP 226

Query: 147 RPGM-----------HMKLIKFLLKLKAP--RIVYVSCNPATCARDLDYLCH-GVGDQNI 192
                          + KLI+  L++ +    I+  +                G G Q  
Sbjct: 227 SFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKH 286

Query: 193 KGCYKLKSLQPVDMFPHTPHIE 214
              Y      P D F      E
Sbjct: 287 T--YLDLQQLPSD-FAVNVQDE 305

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 65.7 bits (159), Expect = 2e-13
 Identities = 46/231 (19%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 1   MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
             N   S     + E E  L GK      ++    +   +   Q      +     +   
Sbjct: 81  EKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQRENRLALE 140

Query: 61  AGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNI-SNAT 118
             ++    + VLD+F  TG   +  A      V G +  P+AI  A  NAKLN +     
Sbjct: 141 KWVQPG--DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMK 198

Query: 119 FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH-----------MKLIKFLLKLKAP--R 165
           F+ G   +          K DIV+ DP     H             +    L L      
Sbjct: 199 FIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGI 258

Query: 166 IVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSL--QPVDMFPHTPHIE 214
           +V  SC+     +    +    G +  K    L+    Q  D  P     +
Sbjct: 259 LVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPD-HPILMASK 308

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 62.6 bits (151), Expect = 1e-12
 Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 14/140 (10%)

Query: 43  FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQA 101
           ++T  + A  L  L      +     ++V DL  GTG +         K V   EV  +A
Sbjct: 25  YRTPGNAASELLWLAYSLGDIEG---KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEA 81

Query: 102 ISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-HMKLIKFLLK 160
           +     N          F+        GD      + DIVI +P            FLLK
Sbjct: 82  VDVLIENLGEFKGKFKVFI--------GDVSEFNSRVDIVIMNPPFGSQRKHADRPFLLK 133

Query: 161 -LKAPRIVYVSCNPATCARD 179
             +   +VY         R 
Sbjct: 134 AFEISDVVYSIHLAKPEVRR 153

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 60.6 bits (146), Expect = 1e-11
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 29/178 (16%)

Query: 29  TLRGLTFQISANSFFQTNT------HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG 82
           +L G+ F     +F           H   +   +      L+      VL+LF  TG   
Sbjct: 94  SLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLK------VLNLFGYTGVAS 147

Query: 83  LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA--TFVQGDLNKIGGDFGNAFPKPDI 140
           L  A     V   +   +AI  A  N  L  +  A   ++  D  K            DI
Sbjct: 148 LVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207

Query: 141 VISDPNRPGMHMK------------LIKFLLKLKAPR---IVYVSCNPATCARDLDYL 183
           +++DP + G                ++    ++ +P+   +V  + +       +  L
Sbjct: 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHEL 265

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 55.6 bits (133), Expect = 4e-10
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 15/194 (7%)

Query: 26  ITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL 85
             E        ++   F   N  +   + K+ +          E+V+D+F G G + L +
Sbjct: 74  HVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPD--------ELVVDMFAGIGHLSLPI 125

Query: 86  A-RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144
           A      V   E  P        N  LN + +        N    DF        I++  
Sbjct: 126 AVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSA---YNMDNRDFPGENIADRILMGY 182

Query: 145 PNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPV 204
                 H  + K L   K   I++            +           +  Y ++ L  +
Sbjct: 183 V--VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPF-ETFKRITKEYGYDVEKLNEL 239

Query: 205 DMFPHTPHIECVCL 218
            +  + P +  V L
Sbjct: 240 KIKRYAPGVWHVVL 253

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.7 bits (131), Expect = 5e-10
 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 43  FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQA 101
           + T+   A      I +   +       V+D   G G +         + V  +++ P A
Sbjct: 27  YPTDASTAAYFLIEIYNDGNIGGR---SVIDAGTGNGILACGSYLLGAESVTAFDIDPDA 83

Query: 102 ISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKL 161
           I  A RN    N     F+  D+++I G +      P                I    + 
Sbjct: 84  IETAKRNCGGVN-----FMVADVSEISGKYDTWIMNP---PFGSVVKHSDRAFIDKAFET 135

Query: 162 KAPRIVYVSCNPAT 175
                +Y   N   
Sbjct: 136 S--MWIYSIGNAKA 147

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 69  EIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
           + VL L   +GT    ++  V     ++G E  P+ + +     +         + GD  
Sbjct: 75  KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV--PILGDAT 132

Query: 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATC 176
           K   ++    PK D++  D  +P     LI             +    +  
Sbjct: 133 KP-EEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRS 182

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 56  LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS 115
           LI   A    +  ++ +D+ CGTG + L LA  V+ VY  +  P+AIS    N + + + 
Sbjct: 24  LIMCLAEPGKN--DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG 81

Query: 116 -NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171
            N T ++GD      +     P  DI +   +   +   L     KLK    + V+ 
Sbjct: 82  DNVTLMEGDAP----EALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA 134

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 21/168 (12%), Positives = 50/168 (29%), Gaps = 9/168 (5%)

Query: 54  YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLN 112
              I     +  D  ++VLD+ CGTG + +  A+   K V G +                
Sbjct: 24  RDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNK 81

Query: 113 NISNATFVQGDLNKIG-GDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPR---IVY 168
                T ++G + ++            + +        M   ++    K  A        
Sbjct: 82  LEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141

Query: 169 VSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 216
           +         D++     +   +    +K+  ++   +      +E +
Sbjct: 142 ICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVI--PEAVVEVL 187

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 35/203 (17%), Positives = 63/203 (31%), Gaps = 40/203 (19%)

Query: 2   NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
            ++   V N SV + E     +    E     +F                 L   + D  
Sbjct: 104 RHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFD----------------LVAQMIDEI 147

Query: 62  GLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN------ 113
            + DD  ++ +DL  G G + L +A     KH YG E        A    +         
Sbjct: 148 KMTDD--DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY 205

Query: 114 ---ISNATFVQGDLNKIGGDFGNAFPKPDIVISD--PNRPGMHMKLIKFLLKLKAP--RI 166
               +  T  +GD      ++        ++  +     P +  +L +    +K    RI
Sbjct: 206 GKKHAEYTLERGDFLSE--EWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK-EGGRI 262

Query: 167 V----YVSCNPATCARDLDYLCH 185
           V    +   N    +R+L  +  
Sbjct: 263 VSSKPFAPLNFRINSRNLSDIGT 285

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 27/167 (16%), Positives = 47/167 (28%), Gaps = 22/167 (13%)

Query: 13  VGEEEYTLYGKSNITETLRGLTFQISANSF-FQTNTHQAEVLYKLIEDCAGLRDDGSEIV 71
           +  E   L  +         + F   A +   +    + E + K +    G++ D    V
Sbjct: 37  LTPEHLELRKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAV----GIKGDYLPDV 92

Query: 72  LDLFCGTGTIGLTLARWVKHVYGYEVVPQA---ISDACRNAKLNN------ISNATFVQG 122
           +D   G G     LA     V   E  P     + D       +             +  
Sbjct: 93  VDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152

Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPG-----MHMKLIKFLLKLKAP 164
                     +  P+P +V  DP  P      +  K ++    L  P
Sbjct: 153 SSLTA---LTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGP 196

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 21/110 (19%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 69  EIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK 126
           E VL L   +GT    LA       +Y  E   +         +  N  N   +  D +K
Sbjct: 58  ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASK 115

Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATC 176
                G    K D++  D  +      L          +   V    A  
Sbjct: 116 PWKYSGI-VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARS 164

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 9e-06
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 54  YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLN 112
              +     L  D  ++VLD+  GTG + +  A+   + V G E    +           
Sbjct: 22  RNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANK 79

Query: 113 NISNATFVQGDLNKI 127
                T ++G + ++
Sbjct: 80  LDHVVTIIKGKVEEV 94

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 27/162 (16%)

Query: 71  VLDLFCGTG--TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
           ++ LF G G   +G   A + + +   E          +  + N+  +A  ++GD++KI 
Sbjct: 3   LISLFSGAGGLDLGFQKAGF-RIICANEYDK----SIWKTYESNH--SAKLIKGDISKIS 55

Query: 129 GDFGNAFPKPDIVISDPNRP---------------GMHMKLIKFLLKLKAPRIVYVSCNP 173
            D    FPK D +I  P                  G        +LK K P         
Sbjct: 56  SD---EFPKCDGIIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK 112

Query: 174 ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 215
              A+  +        +     Y +  +              
Sbjct: 113 GMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRK 154

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 32  GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEI--VLDLFCGTGTIGLTLA--R 87
           GL+  I       T   +   ++ + +       D S +   +D+  G   I   L    
Sbjct: 24  GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL 83

Query: 88  WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK---IGGDFGNAFPKPDIVISD 144
              +    EV     + A +N + NN+S+   V     K   +      +    D  + +
Sbjct: 84  NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCN 143

Query: 145 P 145
           P
Sbjct: 144 P 144

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 53  LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAI 102
           L KL++  A L+ +  E VLD+  G G +    A +VK V  +++    +
Sbjct: 4   LAKLMQ-IAALKGN--EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDIL 50

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 9/107 (8%)

Query: 45  TNTHQAEVLYKLIE---DCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVP 99
           +N    E+L   +        L+    +  +DL  G G   +  A        +G E++ 
Sbjct: 193 SNYVYGELLPNFLSDVYQQCQLKKG--DTFMDLGSGVGNCVVQAALECGCALSFGCEIMD 250

Query: 100 QAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF--PKPDIVISD 144
            A        +        +     N       +     +   +I  
Sbjct: 251 DASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQ 297

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 22/142 (15%)

Query: 48  HQAEVLYK----LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQ 100
               + +     +I     +     + VL+   G+G + L L++ V     V  +EV   
Sbjct: 77  RGTAITFPKDINMILSMMDINP--GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD 134

Query: 101 AISDACRNAK-----------LNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG 149
               A +N K                N  F+  D++    D  +     D V  D   P 
Sbjct: 135 HHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSL--TFDAVALDMLNPH 192

Query: 150 MHMKLIKFLLKLKAPRIVYVSC 171
           + + +    LK      VYV  
Sbjct: 193 VTLPVFYPHLKHGGVCAVYVVN 214

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
           LR  G   VLD+ CGTG   + L      V   +   + +  A +    N      F + 
Sbjct: 52  LRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW-NRRKEPAFDKW 110

Query: 123 DL 124
            +
Sbjct: 111 VI 112

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 51  EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNA 109
                 I     L  D  +IVLD+ CGTG + +  A+   KHV G ++            
Sbjct: 24  LSYRNAIIQNKDLFKD--KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81

Query: 110 KLNNISNATFVQGDLN 125
                   T ++G L 
Sbjct: 82  LNGFSDKITLLRGKLE 97

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 2/95 (2%)

Query: 68  SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
              +L L    GT    +A       VY  E  P+ + +                  +  
Sbjct: 75  DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP 134

Query: 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160
           +   +           ++ PN+  + +K  K+ LK
Sbjct: 135 QEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLK 169

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 29  TLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW 88
            L+G+   I  N    T      ++  L+E     + + S  +LD  CGT  +  T+   
Sbjct: 82  LLKGMKHGIQVNHQM-TPDSIGFIVAYLLEKVIQKKKNVS--ILDPACGTANLLTTVINQ 138

Query: 89  VK-------HVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
           ++       H  G +V    IS A   A L         Q
Sbjct: 139 LELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ 178

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 26  ITETLRG--LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL 83
           + + LRG  L F+  +  F      +   +  L+E+   +  D  + +LDL CG G IG+
Sbjct: 14  VEDILRGKKLKFKTDSGVFSYGKVDKGTKI--LVEN---VVVDKDDDILDLGCGYGVIGI 68

Query: 84  TLARWVKHVYGYEVVPQAISDACRNAKLNN--ISNATFVQGDLNKIGGDFGNAFPKPDIV 141
            LA  VK     ++  +AI  A  N KLNN    +   V  DL +   D        +  
Sbjct: 69  ALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPP 128

Query: 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYL 183
           I         +   +    LK    ++V       A+ L   
Sbjct: 129 IRAGKEVLHRII-EEGKELLKDNGEIWVVIQTKQGAKSLAKY 169

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 18/151 (11%)

Query: 32  GLTFQI---SANSFFQTNTHQAEVLYK----LIEDCAGLRDDGSEIVLDLFCGTGTIGLT 84
           G +F +   S   F +      +++ +     I    GLR      +L++  G+G +   
Sbjct: 45  GKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPG--MDILEVGVGSGNMSSY 102

Query: 85  LARWVK---HVYGYEVVPQAISDACRN-AKLNNISNATFVQGDLNKIGGDFGNAFPKPDI 140
           +   +     +   E     +  A  N ++  +I N    + D+     D          
Sbjct: 103 ILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDA----- 157

Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171
           VI+D   P  H++ I  ++K  +    Y+  
Sbjct: 158 VIADIPDPWNHVQKIASMMKPGSVATFYLPN 188

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 55  KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQ 100
            L+   A  R +    VLD+  G G   L  + +V+   G +   +
Sbjct: 6   GLMIKTAECRAE--HRVLDIGAGAGHTALAFSPYVQECIGVDATKE 49

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 22/63 (34%)

Query: 48  HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACR 107
           HQ+EV   L +  + L       VL   CG       L+    HV G E+   A+     
Sbjct: 1   HQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFT 60

Query: 108 NAK 110
              
Sbjct: 61  ERG 63

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 27/118 (22%), Positives = 37/118 (31%), Gaps = 10/118 (8%)

Query: 60  CAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRN---AKLNN 113
                      VL+   G+G + L+L R V     V  YE        A RN        
Sbjct: 89  VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148

Query: 114 ISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171
             N   V  DL       G+     D  + D   P   +  +  LL      +VYV+ 
Sbjct: 149 PDNWRLVVSDLADSELPDGSV----DRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVAT 202

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 8/71 (11%)

Query: 63  LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVV-----PQAISDACRNAKLNNISNA 117
           L     +IVLD    TG  G+   R+       EV        A     RN  LN     
Sbjct: 41  LNILNPKIVLDALSATGIRGI---RFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 97

Query: 118 TFVQGDLNKIG 128
              +G     G
Sbjct: 98  RESKGRAILKG 108

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 18/113 (15%), Positives = 26/113 (23%), Gaps = 6/113 (5%)

Query: 44  QTNTHQAEV---LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQ 100
           +T  HQ +    L K ++     +      V    CG        A     V G E+   
Sbjct: 21  KTAFHQEQGHQLLKKHLDTFLKGKSGLR--VFFPLCGKAVEMKWFADRGHSVVGVEISEL 78

Query: 101 AISDACRNAKLNNISNATFVQGDLNKIGGDFGNA-FPKPDIVISDPNRPGMHM 152
            I +      L+                   GN       I        G   
Sbjct: 79  GIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFD 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	100.0
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.83
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.82
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.81
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.81
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.81
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.79
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.79
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.76
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.76
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.73
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.73
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.73
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.72
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.72
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.69
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.67
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.66
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.65
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.64
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.62
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.61
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.61
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.6
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.59
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.59
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.58
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.58
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.57
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.56
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.54
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.53
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.51
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.51
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.51
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.51
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.51
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.49
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.49
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.49
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.48
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.47
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.47
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.45
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.44
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.44
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.43
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.41
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.41
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.4
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.4
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.38
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.38
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.37
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.37
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.36
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.36
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.36
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.35
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.35
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.32
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.32
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.29
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.28
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.27
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.25
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.22
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.21
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.18
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.08
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.07
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.05
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.05
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.01
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.99
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.97
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.9
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.89
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.85
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.84
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.83
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.83
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.78
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.78
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.76
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.76
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.68
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.6
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.6
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.59
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.54
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.49
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.42
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.29
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	98.24
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	98.19
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	98.12
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.03
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.95
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.94
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.82
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.79
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.71
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.54
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.38
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.14
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.47
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.96
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.85
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.01
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.77
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.75
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.73
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.71
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.36
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.27
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	93.79
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.56
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.54
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.39
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	93.28
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.26
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.14
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.95
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.94
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.78
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.65
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.5
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.46
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.45
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.17
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.5
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.44
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.21
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.89
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.8
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.77
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.52
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.46
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.42
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.41
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	90.23
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.23
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.11
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.04
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.98
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.55
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.46
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	89.41
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	88.71
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.66
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.65
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.47
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	88.03
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	87.9
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	87.88
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	87.68
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	87.29
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.59
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.52
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.42
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	86.32
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	86.22
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.08
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.02
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.9
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.29
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	84.99
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.48
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	84.14
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	83.65
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.54
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	83.43
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	82.39
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	82.31
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	81.83
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	80.7
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	80.34
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	80.29
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.14

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-37  Score=260.24  Aligned_cols=194  Identities=35%  Similarity=0.499  Sum_probs=174.3

Q ss_pred             ceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEE
Q 043853           16 EEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGY   95 (222)
Q Consensus        16 ~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gv   95 (222)
                      ....++|+..+.+ ..|..|.+++++|+|.|...++.+++.+.+.+...+  +++|||++||+|.+++.+|+.+.+|+|+
T Consensus       164 ~~~~~~g~~~~~~-~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~--~~~vlDLycG~G~fsl~La~~~~~V~gv  240 (358)
T d1uwva2         164 ILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQP--EDRVLDLFCGMGNFTLPLATQAASVVGV  240 (358)
T ss_dssp             CCEEEECCCCEEE-ETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCT--TCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred             eEEeecCCceEEe-cCCEEEEECCchhhccchhhhhHHHHHHHHhhccCC--CceEEEecccccccchhccccccEEEec
Confidence            4567888766654 489999999999999999999999999999886444  7899999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccc
Q 043853           96 EVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPAT  175 (222)
Q Consensus        96 D~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~  175 (222)
                      |.++.+++.|++|++.|+++|++++.+|..+...........+|+|+.||||.|+. ++++.+...++..++|+||+|.|
T Consensus       241 E~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~-~~~~~l~~~~~~~ivYVSCnp~T  319 (358)
T d1uwva2         241 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPAT  319 (358)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH-HHHHHHHHHCCSEEEEEESCHHH
T ss_pred             cCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCccHH-HHHHHHHHcCCCEEEEEeCCHHH
Confidence            99999999999999999999999999999886544333335799999999999986 68888888899999999999999


Q ss_pred             hHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          176 CARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       176 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      +++|+..|.        +.||++..+.++||||+|+|+|+|++|+|
T Consensus       320 laRDl~~l~--------~~gy~l~~i~~~D~FP~T~HvE~v~~l~R  357 (358)
T d1uwva2         320 LARDSEALL--------KAGYTIARLAMLDMFPHTGHLESMVLFSR  357 (358)
T ss_dssp             HHHHHHHHH--------HTTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred             HHHHHHHHH--------HCCCeEeEEEEEecCCCCccEEEEEEEEe
Confidence            999999886        68999999999999999999999999987

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.83  E-value=1.1e-19  Score=149.71  Aligned_cols=188  Identities=21%  Similarity=0.204  Sum_probs=125.1

Q ss_pred             ceEEEeCCC---ceeeeecCeeEEEcCCccccCCH--HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-
Q 043853           16 EEYTLYGKS---NITETLRGLTFQISANSFFQTNT--HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-   89 (222)
Q Consensus        16 ~~~~~~g~~---~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-   89 (222)
                      ..+.++|..   .+...++|.+|.++...+..+..  ++.+....++...     .++++|||++||+|++++.++..+ 
T Consensus        93 ~~~~l~G~~~~~~~~v~E~Gl~f~vdl~~g~ktGlflDqR~~r~~l~~~~-----~~g~~VLdlf~~~G~~sl~aa~~ga  167 (317)
T d2b78a2          93 VSAHLYGQEAPEQFLILENGISYNVFLNDGLMTGIFLDQRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGA  167 (317)
T ss_dssp             CEEEEEESCCCSSEEEEETTEEEEECSSSSSCCSSCGGGHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTB
T ss_pred             cceEEecCCCCcceeeeeCCEEEEEEcccccccCCcHHHHHHHHHHHHHh-----hCCCceeecCCCCcHHHHHHHhCCC
Confidence            455677754   57788899999999765444332  2322222222222     247899999999999999887755 


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-----Cc------cHHHHH
Q 043853           90 KHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-----GM------HMKLIK  156 (222)
Q Consensus        90 ~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-----~~------~~~~~~  156 (222)
                      ..|+++|+|+.+++.|++|++.|+++  +++++++|+.++...+.....+||+|++|||.-     ..      ..+++.
T Consensus       168 ~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~  247 (317)
T d2b78a2         168 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIR  247 (317)
T ss_dssp             SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHH
T ss_pred             ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHH
Confidence            48999999999999999999999985  599999999998765544446899999999932     11      122333


Q ss_pred             H-HHhCCCCcEEEEeeCccchHhh-HH-HhhccCCCCccCCCeEEeE--eeeeccCCCCCce
Q 043853          157 F-LLKLKAPRIVYVSCNPATCARD-LD-YLCHGVGDQNIKGCYKLKS--LQPVDMFPHTPHI  213 (222)
Q Consensus       157 ~-l~~l~~~~~v~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~  213 (222)
                      . +..++|+|+++++|+...+..+ +. .+.++..    ..+.++..  ..+.| ||.++++
T Consensus       248 ~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~----~~~~~~~~~~~~~~D-fP~~~~~  304 (317)
T d2b78a2         248 QGLEILSENGLIIASTNAANMTVSQFKKQIEKGFG----KQKHTYLDLQQLPSD-FAVNVQD  304 (317)
T ss_dssp             HHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHT----TCCCEEEEEECCCTT-SCCCTTC
T ss_pred             HHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHH----HcCCeEEEeccCCCC-CCCCCCC
Confidence            2 3347899998877764333222 22 2111111    23444433  34666 8877764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=2.7e-19  Score=143.54  Aligned_cols=146  Identities=21%  Similarity=0.286  Sum_probs=108.5

Q ss_pred             ccccCceEEEeCCCce-eeeecCeeEEEcCC--ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh
Q 043853           11 TSVGEEEYTLYGKSNI-TETLRGLTFQISAN--SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR   87 (222)
Q Consensus        11 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~   87 (222)
                      .+...++.+++|...+ ...++|..|.+++.  .|++.+.....++.+    ..    .++++|||+|||+|.+++.+|+
T Consensus        56 ~~R~~~~~~l~G~~~~~~~~E~g~~~~~d~~~~~f~~~~~~er~ri~~----~~----~~g~~VlD~~aG~G~~~l~~a~  127 (260)
T d2frna1          56 ETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAK----VA----KPDELVVDMFAGIGHLSLPIAV  127 (260)
T ss_dssp             ------CEEEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHH----HC----CTTCEEEETTCTTTTTHHHHHH
T ss_pred             hhccccceecCCCCceeEEEecCeeEEeccccccEecCCHHHHHHHHh----hc----CCccEEEECcceEcHHHHHHHH
Confidence            3445567899998854 45568999999965  566655545444333    22    3589999999999999998887


Q ss_pred             cC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHH-HHHHhCCCC
Q 043853           88 WV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLI-KFLLKLKAP  164 (222)
Q Consensus        88 ~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~-~~l~~l~~~  164 (222)
                      .+ .+|+++|+||.+++.+++|++.|++++ ++++++|+.++...     ..||.|+++||...  ..++ ..+..++++
T Consensus       128 ~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~-----~~~D~Ii~~~p~~~--~~~l~~a~~~l~~g  200 (260)
T d2frna1         128 YGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-----NIADRILMGYVVRT--HEFIPKALSIAKDG  200 (260)
T ss_dssp             HTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-----SCEEEEEECCCSSG--GGGHHHHHHHEEEE
T ss_pred             hCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC-----CCCCEEEECCCCch--HHHHHHHHhhcCCC
Confidence            65 599999999999999999999999987 99999999887542     47999999988542  2333 355567899


Q ss_pred             cEEEEee
Q 043853          165 RIVYVSC  171 (222)
Q Consensus       165 ~~v~~~~  171 (222)
                      |++.+.+
T Consensus       201 G~lh~~~  207 (260)
T d2frna1         201 AIIHYHN  207 (260)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEe
Confidence            9875443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.81  E-value=2.8e-19  Score=137.60  Aligned_cols=147  Identities=26%  Similarity=0.305  Sum_probs=107.8

Q ss_pred             ceeeeecCeeEEE--cCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHH
Q 043853           25 NITETLRGLTFQI--SANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAI  102 (222)
Q Consensus        25 ~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i  102 (222)
                      .+...+.|..+.+  +++.|.+...+...+   .+.+.+..  .++++|||+|||+|.+++.+++.+++++++|+|+.++
T Consensus        13 ~~~~~~~g~~~~~~t~~gvF~~~~~d~~t~---lLi~~l~~--~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i   87 (194)
T d1dusa_          13 IVEDILRGKKLKFKTDSGVFSYGKVDKGTK---ILVENVVV--DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAI   87 (194)
T ss_dssp             EEEEEETTEEEEEEEETTSTTTTSCCHHHH---HHHHHCCC--CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHH
T ss_pred             EEEEEECCeeEEEEcCCCccCCCCcCHHHH---HHHHhCCc--CCCCeEEEEeecCChhHHHHHhhccccceeeeccccc
Confidence            4555667776665  578887765543322   23444433  3478999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---cHHHHHHH-HhCCCCcEEEEeeCccch
Q 043853          103 SDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---HMKLIKFL-LKLKAPRIVYVSCNPATC  176 (222)
Q Consensus       103 ~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---~~~~~~~l-~~l~~~~~v~~~~~~~~~  176 (222)
                      +.|++|++.+++++  +++..+|+.+...     .+.||+|+++||....   ...+++.+ +.++|+|.+++.+.....
T Consensus        88 ~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-----~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  162 (194)
T d1dusa_          88 KLAKENIKLNNLDNYDIRVVHSDLYENVK-----DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             HHHHHHHHHTTCTTSCEEEEECSTTTTCT-----TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             hhHHHHHHHhCCccceEEEEEcchhhhhc-----cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcCC
Confidence            99999999998864  8999999976432     2589999999995432   23334443 348999998887755544


Q ss_pred             HhhHH
Q 043853          177 ARDLD  181 (222)
Q Consensus       177 ~~~~~  181 (222)
                      ...+.
T Consensus       163 ~~~~~  167 (194)
T d1dusa_         163 AKSLA  167 (194)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=2.8e-20  Score=153.65  Aligned_cols=153  Identities=18%  Similarity=0.157  Sum_probs=113.5

Q ss_pred             CceEEEeCCC--ceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeE
Q 043853           15 EEEYTLYGKS--NITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHV   92 (222)
Q Consensus        15 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v   92 (222)
                      ...+.++|+.  .+...++|.+|.++...+..++....++..+.+....     .+++|||+|||+|++++.+|+++.+|
T Consensus        96 ~~~~~l~g~~~~~~~v~E~G~~f~v~l~~~~~tG~flDqr~~r~~~~~~-----~g~rVLDl~~gtG~~s~~~a~g~~~V  170 (318)
T d1wxxa2          96 LYVRPLLGEVPERVQVQEGRVRYLVDLRAGQKTGAYLDQRENRLYMERF-----RGERALDVFSYAGGFALHLALGFREV  170 (318)
T ss_dssp             CEEEEEESCCCSEEEEEETTEEEEEECSTTSCCCCCGGGHHHHHHGGGC-----CEEEEEEETCTTTHHHHHHHHHEEEE
T ss_pred             ceeeeecCCccceEEEEECCEEEEEechhccccccchhhhhhHHHHHHh-----CCCeeeccCCCCcHHHHHHHhcCCcE
Confidence            3456788875  5788999999999976554444433333333332222     37899999999999999999888899


Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc-----------HHHHHH-HHh
Q 043853           93 YGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH-----------MKLIKF-LLK  160 (222)
Q Consensus        93 ~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~-----------~~~~~~-l~~  160 (222)
                      +++|+|+.+++.|++|++.||+++++++++|+.++...+.....+||+|++|||.....           .+++.. +..
T Consensus       171 ~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~l  250 (318)
T d1wxxa2         171 VAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKL  250 (318)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHT
T ss_pred             EeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998899999999988665544456899999999943211           122222 233


Q ss_pred             CCCCcEEEEeeC
Q 043853          161 LKAPRIVYVSCN  172 (222)
Q Consensus       161 l~~~~~v~~~~~  172 (222)
                      ++|||+++.+++
T Consensus       251 LkpGG~Lv~~sc  262 (318)
T d1wxxa2         251 LKEGGILATASC  262 (318)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cCCCCEEEEEeC
Confidence            789888765544

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.9e-19  Score=145.12  Aligned_cols=146  Identities=20%  Similarity=0.196  Sum_probs=112.9

Q ss_pred             eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHH
Q 043853           27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISD  104 (222)
Q Consensus        27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~  104 (222)
                      ...++|..|.++++.|.|.  +.++.+++++.....   ..+.+|||+|||+|.+++.++...+  +++|+|+|+.+++.
T Consensus        73 ~~~F~~~~~~v~~~VlIPR--peTE~lv~~~l~~~~---~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~  147 (274)
T d2b3ta1          73 VREFWSLPLFVSPATLIPR--PDTECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSL  147 (274)
T ss_dssp             EEEETTEEEECCTTSCCCC--TTHHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHH
T ss_pred             cEEEeeeEEEEeccccccc--cchhhhhhhHhhhhc---ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhH
Confidence            4578999999999999984  677777877766543   2356899999999999999987654  99999999999999


Q ss_pred             HHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------------cHHHHHH
Q 043853          105 ACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------------HMKLIKF  157 (222)
Q Consensus       105 a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------------~~~~~~~  157 (222)
                      |++|++.+++++++++++|+.+....     .+||+|++|||+-..                           ...++..
T Consensus       148 A~~Na~~~~~~~v~~~~~d~~~~~~~-----~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~  222 (274)
T d2b3ta1         148 AQRNAQHLAIKNIHILQSDWFSALAG-----QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ  222 (274)
T ss_dssp             HHHHHHHHTCCSEEEECCSTTGGGTT-----CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH
T ss_pred             HHHHHHHhCcccceeeecccccccCC-----CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHH
Confidence            99999999998899999999775432     489999999994210                           1123333


Q ss_pred             HHh-CCCCcEEEEeeCccchHhhHHHh
Q 043853          158 LLK-LKAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       158 l~~-l~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      ... ++++|.+++..+.... ..+..+
T Consensus       223 a~~~L~~~G~l~lEig~~q~-~~v~~~  248 (274)
T d2b3ta1         223 SRNALVSGGFLLLEHGWQQG-EAVRQA  248 (274)
T ss_dssp             HGGGEEEEEEEEEECCSSCH-HHHHHH
T ss_pred             HHHhcCCCCEEEEEECchHH-HHHHHH
Confidence            322 6889999988876554 344433

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=4.9e-19  Score=141.44  Aligned_cols=154  Identities=16%  Similarity=0.153  Sum_probs=112.0

Q ss_pred             cCeeEEEcCC-ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHH
Q 043853           31 RGLTFQISAN-SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNA  109 (222)
Q Consensus        31 ~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~  109 (222)
                      ....+.++|+ +|-..+++.++..++++....    .++++|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|++|+
T Consensus        87 ~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~----~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na  162 (254)
T d2nxca1          87 AEIPLVIEPGMAFGTGHHETTRLALKALARHL----RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANA  162 (254)
T ss_dssp             SSEEEECCCC-----CCSHHHHHHHHHHHHHC----CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHH
T ss_pred             cceEEEEccccccCccccchhhHHHHHHHhhc----CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHH
Confidence            4577888887 555666667777777776654    35789999999999999999988889999999999999999999


Q ss_pred             HHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhhccCC
Q 043853          110 KLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLCHGVG  188 (222)
Q Consensus       110 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~~~~~  188 (222)
                      +.++++ +++.++|+.+....     ++||+|+++..... ...+.+.+. .++|+|.++++.-.......+...++   
T Consensus       163 ~~n~~~-~~~~~~d~~~~~~~-----~~fD~V~ani~~~~-l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~---  232 (254)
T d2nxca1         163 KRNGVR-PRFLEGSLEAALPF-----GPFDLLVANLYAEL-HAALAPRYREALVPGGRALLTGILKDRAPLVREAMA---  232 (254)
T ss_dssp             HHTTCC-CEEEESCHHHHGGG-----CCEEEEEEECCHHH-HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHH---
T ss_pred             HHcCCc-eeEEeccccccccc-----cccchhhhcccccc-HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHH---
Confidence            999985 78899998775432     48999999864322 244445443 48999999987533333444443332   


Q ss_pred             CCccCCCeEEeEee
Q 043853          189 DQNIKGCYKLKSLQ  202 (222)
Q Consensus       189 ~~~~~~~~~~~~~~  202 (222)
                          +.||++....
T Consensus       233 ----~~Gf~~~~~~  242 (254)
T d2nxca1         233 ----GAGFRPLEEA  242 (254)
T ss_dssp             ----HTTCEEEEEE
T ss_pred             ----HCCCEEEEEE
Confidence                5678776644

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.79  E-value=6.9e-19  Score=134.51  Aligned_cols=116  Identities=26%  Similarity=0.357  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhh
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGG  129 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~  129 (222)
                      +++...+...+..  .++++|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+...
T Consensus        19 ~eir~~il~~l~~--~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          19 MEVRCLIMCLAEP--GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC   96 (186)
T ss_dssp             HHHHHHHHHHHCC--CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred             HHHHHHHHHhcCC--CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc
Confidence            3333445555543  35899999999999999999998889999999999999999999999995 79999999988765


Q ss_pred             hcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853          130 DFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~  173 (222)
                      .    ...||.|+++.+.... ..+++.+ ..++|+|.+++.+..
T Consensus        97 ~----~~~~D~v~~~~~~~~~-~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          97 K----IPDIDIAVVGGSGGEL-QEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             T----SCCEEEEEESCCTTCH-HHHHHHHHHTEEEEEEEEEEECB
T ss_pred             c----cCCcCEEEEeCccccc-hHHHHHHHHHhCcCCEEEEEeec
Confidence            4    2479999999886554 4555554 458999988877654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.76  E-value=1.9e-18  Score=140.95  Aligned_cols=120  Identities=22%  Similarity=0.196  Sum_probs=95.3

Q ss_pred             ceeeeecCeeEEEcCCccccCCHH--HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHH
Q 043853           25 NITETLRGLTFQISANSFFQTNTH--QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAI  102 (222)
Q Consensus        25 ~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i  102 (222)
                      .+...++|++|.+++..+.+++.-  +... ++++.+.+... ..+.+|||+|||+|.+++.++..+.+|++||.|+.++
T Consensus        90 ~~~v~e~gl~f~v~~~~~~~tG~f~dqr~n-r~~~~~~~~~~-~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al  167 (309)
T d2igta1          90 TWPLSLLGVEFLGRFTAFRHVGVFPEQIVH-WEWLKNAVETA-DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAI  167 (309)
T ss_dssp             EEEEEETTEEEEEECCSSSCCSCCGGGHHH-HHHHHHHHHHS-SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             eEEEEEeEEEEEEeccCCCccccccchhHH-HHHHHHHHhhc-cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHH
Confidence            688899999999998655554432  2222 44444443211 2367999999999999999998888999999999999


Q ss_pred             HHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853          103 SDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus       103 ~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      +.|++|++.|++.+  ++++++|+.++.........+||+||+|||
T Consensus       168 ~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP  213 (309)
T d2igta1         168 GWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPP  213 (309)
T ss_dssp             HHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCC
T ss_pred             HHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCC
Confidence            99999999999863  999999999987655444468999999999

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=7e-18  Score=128.56  Aligned_cols=137  Identities=20%  Similarity=0.286  Sum_probs=106.9

Q ss_pred             eecCeeEEEcCCc-cccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH-hhcCCeEEEEeCCHHHHHHHH
Q 043853           29 TLRGLTFQISANS-FFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL-ARWVKHVYGYEVVPQAISDAC  106 (222)
Q Consensus        29 ~~~~~~~~~~~~~-f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l-a~~~~~v~gvD~~~~~i~~a~  106 (222)
                      ++.|..+..+.+. -.|+.....+.+..++...+     ++.+|||+|||+|.+++.+ ++++.+|++||.|+.+++.++
T Consensus         9 ~~kg~~l~~~~~~~~RPt~~~vre~lfn~l~~~~-----~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k   83 (183)
T d2fpoa1           9 QWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVI-----VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLI   83 (183)
T ss_dssp             GGTTCEEECCCC------CHHHHHHHHHHHHHHH-----TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             ccCCCEecCCCCCCcCcCcHHHHHHHHhhhhccc-----chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHH
Confidence            4667888877654 55655567777777776554     3679999999999999955 556679999999999999999


Q ss_pred             HHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHHHh---CCCCcEEEEeeCc
Q 043853          107 RNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFLLK---LKAPRIVYVSCNP  173 (222)
Q Consensus       107 ~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~~---l~~~~~v~~~~~~  173 (222)
                      +|++.++..+++++++|+.++...   ...+||+|++|||+. .....+++.+..   +++++++++.++.
T Consensus        84 ~N~~~~~~~~~~ii~~d~~~~l~~---~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1          84 KNLATLKAGNARVVNSNAMSFLAQ---KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             HHHHHTTCCSEEEECSCHHHHHSS---CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             HHHhhccccceeeeeecccccccc---cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            999999988899999999988654   235899999999954 566777777765   6789999987654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.6e-17  Score=125.24  Aligned_cols=138  Identities=15%  Similarity=0.142  Sum_probs=99.0

Q ss_pred             ecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHH
Q 043853           30 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNA  109 (222)
Q Consensus        30 ~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~  109 (222)
                      +.|.++..+. .-.|+.....+.+.+++...+    ..+.+|||+|||+|.+++.++..+.+++++|.|+.+++.+++|+
T Consensus         9 ~kg~~l~~~~-~~Rpt~~~v~e~lf~~l~~~~----~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~   83 (171)
T d1ws6a1           9 ARGVALKVPA-SARPSPVRLRKALFDYLRLRY----PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENV   83 (171)
T ss_dssp             GTTCEECCCT-TCCCCCHHHHHHHHHHHHHHC----TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHH
T ss_pred             ccCCEeCCCC-CCCCCcHHHHHHHHHHhhccc----cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHH
Confidence            4466666543 456666667777778877653    24779999999999999988877889999999999999999999


Q ss_pred             HHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHHHh--CCCCcEEEEeeCc
Q 043853          110 KLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFLLK--LKAPRIVYVSCNP  173 (222)
Q Consensus       110 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~~--l~~~~~v~~~~~~  173 (222)
                      +.+++.+ ++...+...+.........+||+|++|||+. ++...+...+..  +++++++++.+..
T Consensus        84 ~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1          84 RRTGLGA-RVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHTCCC-EEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             Hhhcccc-ceeeeehhcccccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            9999864 5555555443322222235799999999954 444444444432  6788888877643

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.73  E-value=3e-18  Score=126.83  Aligned_cols=104  Identities=19%  Similarity=0.191  Sum_probs=85.9

Q ss_pred             CCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++.+|||+|||+|.+++.++. +..+|+++|.|+.+++.+++|++.+++.+ ++++++|+.++.....   ++||+|++|
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~---~~fDiIf~D   90 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT---GRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC---SCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc---cccceeEec
Confidence            478999999999999996654 45699999999999999999999999876 9999999998765432   589999999


Q ss_pred             CCCC-CccHHHHHHHHh---CCCCcEEEEeeCc
Q 043853          145 PNRP-GMHMKLIKFLLK---LKAPRIVYVSCNP  173 (222)
Q Consensus       145 pp~~-~~~~~~~~~l~~---l~~~~~v~~~~~~  173 (222)
                      ||+. +.....++.+..   ++++++++++++.
T Consensus        91 PPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          91 PPYAKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            9953 445666666654   5788999988754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.3e-16  Score=128.04  Aligned_cols=149  Identities=19%  Similarity=0.301  Sum_probs=112.1

Q ss_pred             eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHH
Q 043853           27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDA  105 (222)
Q Consensus        27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a  105 (222)
                      ...|+|..|.++++.+.|.  +.++.+++++.+......  ..+++|+|||+|..++.+++. ..+|+++|+|+.+++.|
T Consensus        74 ~~~F~~~~f~v~~~vlIPR--peTE~lv~~~~~~~~~~~--~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A  149 (271)
T d1nv8a_          74 EKEFMGLSFLVEEGVFVPR--PETEELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIA  149 (271)
T ss_dssp             EEEETTEEEECCTTSCCCC--TTHHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHH
T ss_pred             cEEEeeeEEEEecCccCch--hhhhhhhhhhhhhhcccc--ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHH
Confidence            4577999999999999984  667888888777654332  568999999999999988764 34999999999999999


Q ss_pred             HHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------cHHHHHH-HHh-C
Q 043853          106 CRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------HMKLIKF-LLK-L  161 (222)
Q Consensus       106 ~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------~~~~~~~-l~~-l  161 (222)
                      ++|++.+++.+ +.+..+|+.+.....   .++||+|++|||+-..                     .-.+.+. +.. +
T Consensus       150 ~~Na~~~~~~~~~~i~~~~~~~~~~~~---~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L  226 (271)
T d1nv8a_         150 RKNAERHGVSDRFFVRKGEFLEPFKEK---FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD  226 (271)
T ss_dssp             HHHHHHTTCTTSEEEEESSTTGGGGGG---TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC
T ss_pred             HHHHHHcCCCceeEEeecccccccccc---cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhc
Confidence            99999999976 889999998765432   2489999999992110                     0122222 222 7


Q ss_pred             CCCcEEEEeeCccchHhhHHHh
Q 043853          162 KAPRIVYVSCNPATCARDLDYL  183 (222)
Q Consensus       162 ~~~~~v~~~~~~~~~~~~~~~l  183 (222)
                      +++|++++..++.+. ..+..+
T Consensus       227 ~~~G~l~~Eig~~Q~-~~v~~l  247 (271)
T d1nv8a_         227 TSGKIVLMEIGEDQV-EELKKI  247 (271)
T ss_dssp             CTTCEEEEECCTTCH-HHHTTT
T ss_pred             CCCCEEEEEECHHHH-HHHHHH
Confidence            899999998876443 344433

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=1.7e-17  Score=137.06  Aligned_cols=151  Identities=26%  Similarity=0.266  Sum_probs=107.7

Q ss_pred             cCceEEEeCCC--ceeeeecCeeEEEcC----CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh
Q 043853           14 GEEEYTLYGKS--NITETLRGLTFQISA----NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR   87 (222)
Q Consensus        14 ~~~~~~~~g~~--~~~~~~~~~~~~~~~----~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~   87 (222)
                      ......++|..  ....++++..|..+.    .+|+.......    .++...+    .++++|||+|||+|++++.++.
T Consensus        94 ~~~~~~l~g~~~~~~~v~e~~~~~~~~~~~~~tG~flDqr~~r----~~~~~~~----~~g~~VLDl~~g~G~~si~~a~  165 (324)
T d2as0a2          94 PEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQRENR----LALEKWV----QPGDRVLDVFTYTGGFAIHAAI  165 (324)
T ss_dssp             CCEEEEEEESCCCEEEEEETTEEEEEESSSSSSCCCSTTHHHH----HHHGGGC----CTTCEEEETTCTTTHHHHHHHH
T ss_pred             chhheeeccCCCceEEEEcCCEEEEecccccccCcccchhhHH----HHHHhhc----CCCCeeecccCcccchhhhhhh
Confidence            34455666665  355667888888774    35666433332    3333333    3478999999999999998887


Q ss_pred             cC-CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc-----------HHH
Q 043853           88 WV-KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH-----------MKL  154 (222)
Q Consensus        88 ~~-~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~-----------~~~  154 (222)
                      .+ .+|+++|+|+.+++.|++|++.||++ +++++++|+.++...+.....+||+|++|||.....           .++
T Consensus       166 ~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l  245 (324)
T d2as0a2         166 AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNV  245 (324)
T ss_dssp             TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHH
T ss_pred             cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHH
Confidence            65 48999999999999999999999996 599999999887765544446899999999943221           122


Q ss_pred             HHH-HHhCCCCcEEEEeeC
Q 043853          155 IKF-LLKLKAPRIVYVSCN  172 (222)
Q Consensus       155 ~~~-l~~l~~~~~v~~~~~  172 (222)
                      +.. +..++|||+++.+++
T Consensus       246 ~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         246 NFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             HHHHHTTEEEEEEEEEEEC
T ss_pred             HHHHHHHcCCCcEEEEEeC
Confidence            222 233789888765543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.72  E-value=9.1e-18  Score=127.74  Aligned_cols=140  Identities=16%  Similarity=0.190  Sum_probs=105.6

Q ss_pred             eecCeeEEEcCC-ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHh-hcCCeEEEEeCCHHHHHHHH
Q 043853           29 TLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDAC  106 (222)
Q Consensus        29 ~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la-~~~~~v~gvD~~~~~i~~a~  106 (222)
                      ++.|.++..+++ .-.|+.....+.+..++...     .++.+|||+|||+|.+++.++ +++.+|+++|.|+.+++.++
T Consensus         7 ~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~-----~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~   81 (182)
T d2fhpa1           7 EYGGRRLKALDGDNTRPTTDKVKESIFNMIGPY-----FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIK   81 (182)
T ss_dssp             TTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCSC-----CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             ccCCCEecCCCCCCcCcCcHHHHHHHHHHHHHh-----cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHH
Confidence            345666666554 44565556666666655322     247899999999999999555 45568999999999999999


Q ss_pred             HHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHHHh---CCCCcEEEEeeCc
Q 043853          107 RNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFLLK---LKAPRIVYVSCNP  173 (222)
Q Consensus       107 ~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~~---l~~~~~v~~~~~~  173 (222)
                      +|++.++.. +++++++|+.++...+.....+||+|++|||+. ......++.+..   +++++++++.++.
T Consensus        82 ~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1          82 ENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             HHhhhhhcccccccccccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            999998886 499999999988765443445899999999953 455677777654   6889999887643

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=1.9e-16  Score=124.66  Aligned_cols=110  Identities=20%  Similarity=0.217  Sum_probs=88.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+++.+.+.+++  +++|||+|||+|.++..+++.+.+++|+|+|+.|++.|++++..++.+++.++++|+.+++..   
T Consensus         5 ~~~l~~~~~~~~--~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~---   79 (234)
T d1xxla_           5 LGLMIKTAECRA--EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP---   79 (234)
T ss_dssp             HHHHHHHHTCCT--TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC---
T ss_pred             HHHHHHHhCCCC--CCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccccccccc---
Confidence            345666666555  899999999999999999998899999999999999999999999998899999999886532   


Q ss_pred             CCCCCcEEEECCC---CCCccHHHHHHHH-hCCCCcEEEEe
Q 043853          134 AFPKPDIVISDPN---RPGMHMKLIKFLL-KLKAPRIVYVS  170 (222)
Q Consensus       134 ~~~~fD~ii~~pp---~~~~~~~~~~~l~-~l~~~~~v~~~  170 (222)
                       ++.||+|++.-.   ..+ ...+++.+. .++|+|.+++.
T Consensus        80 -~~~fD~v~~~~~l~~~~d-~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          80 -DDSFDIITCRYAAHHFSD-VRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             -TTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             -ccccceeeeeceeecccC-HHHHHHHHHHeeCCCcEEEEE
Confidence             358999998643   122 345555554 48999987764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.67  E-value=2.7e-16  Score=123.15  Aligned_cols=108  Identities=21%  Similarity=0.233  Sum_probs=85.4

Q ss_pred             HHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCC
Q 043853           57 IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFP  136 (222)
Q Consensus        57 i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~  136 (222)
                      +.+.+.+.+  +++|||+|||+|.++..+++.+.+++|+|+|+.|++.|+++++..+.++++++++|+.+++..    .+
T Consensus         7 ll~~~~l~~--~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~----~~   80 (231)
T d1vl5a_           7 LMQIAALKG--NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT----DE   80 (231)
T ss_dssp             HHHHHTCCS--CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC----TT
T ss_pred             HHHhcCCCC--cCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccc----cc
Confidence            444555554  789999999999999999998899999999999999999999999998999999999887532    35


Q ss_pred             CCcEEEECCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          137 KPDIVISDPN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       137 ~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .||+|++.--   ..+. ..++..+ +.|+|+|.+++..
T Consensus        81 ~fD~v~~~~~l~~~~d~-~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          81 RFHIVTCRIAAHHFPNP-ASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             CEEEEEEESCGGGCSCH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccccccCCH-HHHHHHHHHhcCCCcEEEEEe
Confidence            8999988753   2233 3444444 4589999887654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=4.1e-15  Score=114.58  Aligned_cols=140  Identities=19%  Similarity=0.182  Sum_probs=94.9

Q ss_pred             ccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe
Q 043853           43 FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQ  121 (222)
Q Consensus        43 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~  121 (222)
                      |+++...+..++..+...-   ..++++|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|++|++.++. +.+++.
T Consensus        25 y~Tp~~~a~~~~~~~~~~~---dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~  100 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLG---DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFI  100 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTT---SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEE
T ss_pred             CCCCHHHHHHHHHHHHhcC---CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEE
Confidence            4456667666554333321   1247899999999999999877765 4999999999999999999998887 489999


Q ss_pred             CchhchhhhcCCCCCCCcEEEECCCCCC----ccHHHHHHHHhCCCCcEEEEeeCccchHhh-HHHhhccCCCCccCCCe
Q 043853          122 GDLNKIGGDFGNAFPKPDIVISDPNRPG----MHMKLIKFLLKLKAPRIVYVSCNPATCARD-LDYLCHGVGDQNIKGCY  196 (222)
Q Consensus       122 ~d~~~~~~~~~~~~~~fD~ii~~pp~~~----~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~  196 (222)
                      +|+.++.       .+||+|++|||+..    ....++....  .....+|.........++ +..+..       ..+|
T Consensus       101 ~d~~~~~-------~~fD~Vi~nPP~~~~~~~~d~~~l~~~~--~~~~~v~~ih~~~~~~~~~i~~~~~-------~~g~  164 (201)
T d1wy7a1         101 GDVSEFN-------SRVDIVIMNPPFGSQRKHADRPFLLKAF--EISDVVYSIHLAKPEVRRFIEKFSW-------EHGF  164 (201)
T ss_dssp             SCGGGCC-------CCCSEEEECCCCSSSSTTTTHHHHHHHH--HHCSEEEEEEECCHHHHHHHHHHHH-------HTTE
T ss_pred             CchhhhC-------CcCcEEEEcCccccccccccHHHHHHHH--hhcccchhcccchHHHHHHHHHHHh-------hcCc
Confidence            9987753       47999999999532    2233333332  334566655443333332 334432       5677


Q ss_pred             EEeEee
Q 043853          197 KLKSLQ  202 (222)
Q Consensus       197 ~~~~~~  202 (222)
                      .+....
T Consensus       165 ~i~~~~  170 (201)
T d1wy7a1         165 VVTHRL  170 (201)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            665543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.65  E-value=8.4e-16  Score=116.83  Aligned_cols=138  Identities=21%  Similarity=0.270  Sum_probs=102.1

Q ss_pred             ecCeeEEEcCC-ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH-hhcCCeEEEEeCCHHHHHHHHH
Q 043853           30 LRGLTFQISAN-SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL-ARWVKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        30 ~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l-a~~~~~v~gvD~~~~~i~~a~~  107 (222)
                      +.|.++..+.+ .-.|+.....+.+..++...+     ++.+|||++||||.+++.+ .+++..++.||.|+.+++.+++
T Consensus        10 ~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~~-----~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~   84 (183)
T d2ifta1          10 WRGRKLPVLNSEGLRPTGDRVKETLFNWLMPYI-----HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKK   84 (183)
T ss_dssp             TTTCEEECC---------CHHHHHHHHHHHHHH-----TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             cCCCEecCCCCCCcCcCcHHHHHHHHHHhhhhc-----ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhh
Confidence            56778887765 345555567777777776544     3679999999999999955 5666799999999999999999


Q ss_pred             HHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHHHh---CCCCcEEEEeeCc
Q 043853          108 NAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFLLK---LKAPRIVYVSCNP  173 (222)
Q Consensus       108 n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~~---l~~~~~v~~~~~~  173 (222)
                      |++..++++  ..+...|+.++..... ...+||+|++|||+. .....+++.+..   +++++++++.++.
T Consensus        85 Ni~~l~~~~~~~~~~~~d~~~~l~~~~-~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1          85 NLQTLKCSSEQAEVINQSSLDFLKQPQ-NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             HHHHTTCCTTTEEEECSCHHHHTTSCC-SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             HHhhhcccccccccccccccccccccc-cCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            999988754  8888999887765432 224799999999965 456777777765   5788999987644

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=2.2e-15  Score=115.34  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=81.4

Q ss_pred             ccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe
Q 043853           43 FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQ  121 (222)
Q Consensus        43 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~  121 (222)
                      |+++.+.+..++..+...-.   -++++|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|++|+     .++++++
T Consensus        27 y~T~~~~a~~~~~~~~~~~d---l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~   98 (197)
T d1ne2a_          27 YPTDASTAAYFLIEIYNDGN---IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-----GGVNFMV   98 (197)
T ss_dssp             CCCCHHHHHHHHHHHHHHTS---SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-----TTSEEEE
T ss_pred             CCCCHHHHHHHHHHHHHcCC---CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-----ccccEEE
Confidence            44567787776655544422   247899999999999999888765 58999999999999999985     3689999


Q ss_pred             CchhchhhhcCCCCCCCcEEEECCCCC----CccHHHHHHHHhCCCCcEEEEee
Q 043853          122 GDLNKIGGDFGNAFPKPDIVISDPNRP----GMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       122 ~d~~~~~~~~~~~~~~fD~ii~~pp~~----~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      +|+.++.       ++||+|++|||..    .....+++...  .....+|.-.
T Consensus        99 ~D~~~l~-------~~fD~Vi~NPPfg~~~~~~D~~fl~~a~--~~~~~iy~ih  143 (197)
T d1ne2a_          99 ADVSEIS-------GKYDTWIMNPPFGSVVKHSDRAFIDKAF--ETSMWIYSIG  143 (197)
T ss_dssp             CCGGGCC-------CCEEEEEECCCC-------CHHHHHHHH--HHEEEEEEEE
T ss_pred             EehhhcC-------CcceEEEeCcccchhhhhchHHHHHHHH--hcCCeEEEeh
Confidence            9997753       4799999999952    23344555443  3345666443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.62  E-value=1.2e-15  Score=120.83  Aligned_cols=112  Identities=17%  Similarity=0.204  Sum_probs=84.0

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      .+.+.+.+.....++.+|||+|||+|.++..+++.+.+++|+|.|+.|++.|+++++..+. +++++++|+.++...   
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~---   99 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN---   99 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS---
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc-cceeeccchhhhccc---
Confidence            3445555443444567999999999999999999999999999999999999999988877 599999999887532   


Q ss_pred             CCCCCcEEEECCC------CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          134 AFPKPDIVISDPN------RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       134 ~~~~fD~ii~~pp------~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                        ++||+|++...      ...-...+++.+.+ |+|+|.++++.
T Consensus       100 --~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         100 --RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             --CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence              47999987421      11111234444433 78999888765

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4e-15  Score=118.34  Aligned_cols=120  Identities=19%  Similarity=0.101  Sum_probs=93.3

Q ss_pred             eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCC---CCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHH
Q 043853           27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD---DGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQA  101 (222)
Q Consensus        27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~---~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~  101 (222)
                      -.+++|+.|.++++...|+ ++....+..++.+++....   .+..++||+|||+|.+++.++..  ..+++|+|+|+.+
T Consensus        19 l~~f~gl~~~v~~~~LiPr-~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~a   97 (250)
T d2h00a1          19 LREDFGLSIDIPLERLIPT-VPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMC   97 (250)
T ss_dssp             HHHHHCCCCCCCTTSCCCC-HHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHH
T ss_pred             HHHHcCceEEeCCCeecCC-CCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHH
Confidence            3467899999999999985 5556666777877764221   23468999999999999988875  5699999999999


Q ss_pred             HHHHHHHHHHcCCCc-EEEEeCchhchhhhcC--CCCCCCcEEEECCCC
Q 043853          102 ISDACRNAKLNNISN-ATFVQGDLNKIGGDFG--NAFPKPDIVISDPNR  147 (222)
Q Consensus       102 i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~--~~~~~fD~ii~~pp~  147 (222)
                      ++.|++|++.+++++ +.+.+.+..+......  ....+||+|++|||+
T Consensus        98 l~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY  146 (250)
T d2h00a1          98 FNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPF  146 (250)
T ss_dssp             HHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCC
T ss_pred             HHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcc
Confidence            999999999999976 8888877655432211  122479999999994

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.4e-15  Score=120.52  Aligned_cols=114  Identities=21%  Similarity=0.193  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhch
Q 043853           50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKI  127 (222)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~  127 (222)
                      ++..++.+.+.+.+.+  +++|||+|||+|..+..+++. +..++|+|+|+.+++.|+++++..++++ ++++++|+.++
T Consensus        18 ~~~~~~~l~~~~~l~p--g~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          18 TEEKYATLGRVLRMKP--GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CHHHHHHHHHHTCCCT--TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHHcCCCC--CCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            4445666777777665  899999999999999988875 5699999999999999999999999875 99999999886


Q ss_pred             hhhcCCCCCCCcEEEECCC---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          128 GGDFGNAFPKPDIVISDPN---RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~pp---~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      ..     .++||+|++.-.   ..+ ...+++.+.+ ++|+|.+++..
T Consensus        96 ~~-----~~~fD~v~~~~~~~~~~d-~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          96 VA-----NEKCDVAACVGATWIAGG-FAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             CC-----SSCEEEEEEESCGGGTSS-SHHHHHHHTTSEEEEEEEEEEE
T ss_pred             cc-----cCceeEEEEEehhhccCC-HHHHHHHHHHHcCcCcEEEEEe
Confidence            43     258999988542   122 3556666554 79999988764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.60  E-value=1.3e-14  Score=111.80  Aligned_cols=113  Identities=12%  Similarity=0.050  Sum_probs=90.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++..|||+|||+|.+++.+|+..+  .++|+|+++.++..|.++++..+++|+.++++|+..+...+.  .+.+|.|++.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~--~~~~d~v~i~  106 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYLN  106 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC--chhhhccccc
Confidence            467899999999999999998764  899999999999999999999999999999999988764433  3578887665


Q ss_pred             CC--C--------CCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHH
Q 043853          145 PN--R--------PGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLD  181 (222)
Q Consensus       145 pp--~--------~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~  181 (222)
                      -|  +        .-+.+.+++.+.+ |+|+|.+++.++.........
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~  154 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSL  154 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHH
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHH
Confidence            43  1        1123577777765 899999999988766665543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-14  Score=112.84  Aligned_cols=134  Identities=12%  Similarity=0.072  Sum_probs=96.3

Q ss_pred             CCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|.++..++. ...+|+|+|+|+.|++.|+++++..+.++++++++|+.++...    .+.||+|++.-
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~----~~~fD~I~~~~  135 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE----PDSYDVIWIQW  135 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC----SSCEEEEEEES
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccc----ccccccccccc
Confidence            468999999999999998764 4568999999999999999999888877899999999987542    25899999865


Q ss_pred             CCCCc----cHHHHHHHHh-CCCCcEEEEeeCc-----------cc---hHhhHHHhhccCCCCccCCCeEEeEeeeecc
Q 043853          146 NRPGM----HMKLIKFLLK-LKAPRIVYVSCNP-----------AT---CARDLDYLCHGVGDQNIKGCYKLKSLQPVDM  206 (222)
Q Consensus       146 p~~~~----~~~~~~~l~~-l~~~~~v~~~~~~-----------~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (222)
                      ...-+    ...++..+.+ ++|+|.+++....           ..   ....+..+.+       +.||++........
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~aGf~ii~~~~q~~  208 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC-------SAGLSLLAEERQEN  208 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHH-------HTTCCEEEEEECCS
T ss_pred             ccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHH-------HcCCEEEEEEEeCC
Confidence            31111    1234555544 7899988776421           01   1222333332       56899988887777


Q ss_pred             CCCCC
Q 043853          207 FPHTP  211 (222)
Q Consensus       207 ~p~~~  211 (222)
                      ||..-
T Consensus       209 fP~~~  213 (222)
T d2ex4a1         209 LPDEI  213 (222)
T ss_dssp             CCTTS
T ss_pred             CCcch
Confidence            88553

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=4.1e-15  Score=115.55  Aligned_cols=119  Identities=22%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853           48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI  127 (222)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~  127 (222)
                      ...+..+..+...+...-+++.+|||+|||+|.++..+++.+.+++|+|+|+.|++.|++++...+. ++.++.+|+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l   96 (226)
T d1ve3a1          18 QEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKL   96 (226)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccc-cccccccccccc
Confidence            3433434444444432223467999999999999999999888999999999999999999987765 478899999887


Q ss_pred             hhhcCCCCCCCcEEEECCCCCCc----cHHHHHHH-HhCCCCcEEEEee
Q 043853          128 GGDFGNAFPKPDIVISDPNRPGM----HMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~pp~~~~----~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +..    .+.||+|++.---.-+    ...+++.+ +.++|+|.+++..
T Consensus        97 ~~~----~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~  141 (226)
T d1ve3a1          97 SFE----DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF  141 (226)
T ss_dssp             CSC----TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccc----CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence            542    3589999886531111    12334444 4489999887665

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.58  E-value=1.1e-14  Score=117.52  Aligned_cols=113  Identities=18%  Similarity=0.119  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhh
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGG  129 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~  129 (222)
                      .+.+.+.....+.  ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....|++ +++++++|+.+++.
T Consensus        54 ~~~~~l~~~~~l~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~  131 (282)
T d2o57a1          54 WLASELAMTGVLQ--RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC  131 (282)
T ss_dssp             HHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHHHHhcCCC--CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence            3334443333333  4889999999999999999875 679999999999999999999999986 59999999988754


Q ss_pred             hcCCCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          130 DFGNAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .    .+.||+|++.-.   .... ..++..+ +.|+|+|.+++..
T Consensus       132 ~----~~sfD~V~~~~~l~h~~d~-~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         132 E----DNSYDFIWSQDAFLHSPDK-LKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             C----TTCEEEEEEESCGGGCSCH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred             c----ccccchhhccchhhhccCH-HHHHHHHHHhcCCCcEEEEEE
Confidence            2    358999988643   2233 3444544 4489999887654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=6.8e-15  Score=116.39  Aligned_cols=99  Identities=29%  Similarity=0.269  Sum_probs=78.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      +.++|||+|||+|..+..+++.+.+++|+|+|+.|++.|+++++..+. +++++++|+.++...     +.||+|++.-.
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~-----~~fD~I~~~~~  114 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK-----NEFDAVTMFFS  114 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC-----SCEEEEEECSS
T ss_pred             CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc-cchheehhhhhcccc-----cccchHhhhhh
Confidence            467899999999999999999888999999999999999999998877 599999999887642     47999988531


Q ss_pred             ---CCC--ccHHHHHHH-HhCCCCcEEEEee
Q 043853          147 ---RPG--MHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       147 ---~~~--~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                         ...  -...+++.+ +.|+|+|+++++.
T Consensus       115 ~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence               111  112333433 3489999988764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.57  E-value=3.7e-14  Score=109.31  Aligned_cols=112  Identities=12%  Similarity=0.053  Sum_probs=91.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++..|||||||+|.+++.+|+..+  .++|+|+++.++..|.+++..++++|+.++.+|+.++...+.  ...+|.|+++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~--~~~~~~i~i~  108 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE--DGEIDRLYLN  108 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC--TTCCSEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhcc--CCceehhccc
Confidence            467899999999999999998755  899999999999999999999999999999999988765433  2478988776


Q ss_pred             CC----------CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhH
Q 043853          145 PN----------RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       145 pp----------~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~  180 (222)
                      -|          ++-+...+++.+.+ |+|+|.+++.++........
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~  155 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYS  155 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHH
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHH
Confidence            54          12345678887765 89999999999876666554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=7.3e-15  Score=112.65  Aligned_cols=99  Identities=22%  Similarity=0.196  Sum_probs=81.2

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +.+|||+|||+|..+..+++.+.+++|+|+|+.+++.+++++...+++++++...|+.+....     +.||+|++....
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~-----~~fD~I~~~~~~  105 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD-----GEYDFILSTVVM  105 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC-----CCEEEEEEESCG
T ss_pred             CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc-----ccccEEEEeeee
Confidence            459999999999999999999999999999999999999999999998899999999886542     579999986531


Q ss_pred             ----CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          148 ----PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       148 ----~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                          ......++..+.+ ++|+|++++.+
T Consensus       106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         106 MFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             GGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                1223455555544 78999887765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.54  E-value=3.2e-14  Score=112.74  Aligned_cols=130  Identities=17%  Similarity=0.091  Sum_probs=90.3

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGG  129 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~  129 (222)
                      ..++...+.+.  ++.+|||+|||+|.+++.+|+.   ..+|+++|.++.+++.|++|++.++ ..++++.++|+.+...
T Consensus        74 ~~~Ii~~l~i~--pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~  151 (250)
T d1yb2a1          74 ASYIIMRCGLR--PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS  151 (250)
T ss_dssp             -------CCCC--TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC
T ss_pred             HHHHHHHcCCC--CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc
Confidence            45555555444  4899999999999999999874   3489999999999999999998864 4679999999987643


Q ss_pred             hcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCc-cchHhhHHHhhccCCCCccCCCeEEeE
Q 043853          130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP-ATCARDLDYLCHGVGDQNIKGCYKLKS  200 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~  200 (222)
                      .     ..||.|++|.|...  ..+....+.++|+|.+.+.+.. .+..+.++.+.        +.||....
T Consensus       152 ~-----~~fD~V~ld~p~p~--~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~--------~~gf~~i~  208 (250)
T d1yb2a1         152 D-----QMYDAVIADIPDPW--NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLS--------ASGMHHLE  208 (250)
T ss_dssp             S-----CCEEEEEECCSCGG--GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSG--------GGTEEEEE
T ss_pred             c-----ceeeeeeecCCchH--HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHH--------HCCCceeE
Confidence            2     47999999988542  2233334557999988755432 33444455553        45675443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=3.9e-14  Score=109.98  Aligned_cols=110  Identities=25%  Similarity=0.213  Sum_probs=86.1

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD  130 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~  130 (222)
                      ...+.+.+.+.+  +++|||+|||+|+++..+|+..   ..|+++|+++.+++.|+++++..+++++.++++|..+....
T Consensus        64 ~a~~l~~l~l~~--g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~  141 (213)
T d1dl5a1          64 MALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE  141 (213)
T ss_dssp             HHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             hHHHHHhhhccc--cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc
Confidence            333455555554  8999999999999999998752   38999999999999999999999999999999998775543


Q ss_pred             cCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853          131 FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       131 ~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                          .++||+|+++.....+...+   +..|+|+|.+++...
T Consensus       142 ----~~~fD~I~~~~~~~~~p~~l---~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         142 ----FSPYDVIFVTVGVDEVPETW---FTQLKEGGRVIVPIN  176 (213)
T ss_dssp             ----GCCEEEEEECSBBSCCCHHH---HHHEEEEEEEEEEBC
T ss_pred             ----ccchhhhhhhccHHHhHHHH---HHhcCCCcEEEEEEC
Confidence                24799999987544444443   445799999887543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.51  E-value=3.1e-13  Score=104.42  Aligned_cols=106  Identities=24%  Similarity=0.118  Sum_probs=80.7

Q ss_pred             CCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           63 LRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        63 ~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +...++++|||+|||+|+.+..+++..  .+|+|+|+||.|++.|+++++..+  |+.++.+|+........ ....+|+
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~-~~~~vd~  128 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSG-IVEKVDL  128 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTT-TCCCEEE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCcccccc-ccceEEE
Confidence            444568999999999999999999854  389999999999999999988754  79999999877644321 2246788


Q ss_pred             EEECCCCCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          141 VISDPNRPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ++.+.+.......++..+. .++|+|.+++..
T Consensus       129 v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         129 IYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            8888765444455555554 489999887654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8e-14  Score=108.95  Aligned_cols=164  Identities=18%  Similarity=0.163  Sum_probs=109.1

Q ss_pred             cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~  107 (222)
                      .+..+.+..+.+... +.+...    +.+.+.....++++|||+|||+|+.+..+|+.   ..+|+++|+++++++.|++
T Consensus        45 ~D~~l~i~~~~~is~-P~~~a~----~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~  119 (224)
T d1i1na_          45 MDSPQSIGFQATISA-PHMHAY----ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVN  119 (224)
T ss_dssp             SSSCEEEETTEEECC-HHHHHH----HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCccccchhhhhh-hHHHHH----HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHH
Confidence            345555555555442 333333    34444222245899999999999999988875   3499999999999999999


Q ss_pred             HHHHcCC-----CcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHH
Q 043853          108 NAKLNNI-----SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY  182 (222)
Q Consensus       108 n~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~  182 (222)
                      |++..++     .++++..+|+......    ...||.|+++.........   .+..|+|+|.+++..........+..
T Consensus       120 ~l~~~~~~~~~~~~~~~~~gD~~~~~~~----~~~fD~I~~~~~~~~ip~~---l~~~LkpGG~LV~pv~~~~~~q~l~~  192 (224)
T d1i1na_         120 NVRKDDPTLLSSGRVQLVVGDGRMGYAE----EAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQ  192 (224)
T ss_dssp             HHHHHCTHHHHTSSEEEEESCGGGCCGG----GCCEEEEEECSBBSSCCHH---HHHTEEEEEEEEEEESCTTSCEEEEE
T ss_pred             hccccCcccccccceEEEEeecccccch----hhhhhhhhhhcchhhcCHH---HHhhcCCCcEEEEEEccCCCcEEEEE
Confidence            9987664     4589999999776543    2479999998754444433   34557999998876543222211111


Q ss_pred             hhccCCCCccCCCeEEeEeeeeccCCCCC
Q 043853          183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTP  211 (222)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~p~~~  211 (222)
                      +.+     .-++.|....+..+.+.|...
T Consensus       193 ~~k-----~~~~~~~~~~l~~v~fvPl~~  216 (224)
T d1i1na_         193 YDK-----LQDGSIKMKPLMGVIYVPLTD  216 (224)
T ss_dssp             EEE-----CTTSCEEEEEEEEECCCBCCC
T ss_pred             EEE-----eCCCeEEEEEEeeEEEECCCC
Confidence            111     113468888888888888765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=6.9e-14  Score=111.56  Aligned_cols=127  Identities=21%  Similarity=0.087  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-C--CeEEEEeCCHHHHHHHHHHHHHc---CCCcEEEEeCc
Q 043853           50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-V--KHVYGYEVVPQAISDACRNAKLN---NISNATFVQGD  123 (222)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~--~~v~gvD~~~~~i~~a~~n~~~~---~~~~v~~~~~d  123 (222)
                      .+..+..+...+.+.+  +.+|||+|||+|.+++.+|+. +  .+++++|+++++++.|++|++..   ..+++++.++|
T Consensus        81 ypkD~s~Ii~~l~i~P--G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          81 YPKDAAQIVHEGDIFP--GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             CHHHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             chHHHHHHHHHhCCCC--CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            3344666777776665  999999999999999999985 3  49999999999999999999874   24579999999


Q ss_pred             hhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEee-CccchHhhHHHhh
Q 043853          124 LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC-NPATCARDLDYLC  184 (222)
Q Consensus       124 ~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~-~~~~~~~~~~~l~  184 (222)
                      +.+...    +...||.|++|.|.+  ...+....+.|+|+|.+.+.+ +..+..+.+..+.
T Consensus       159 ~~~~~~----~~~~fDaV~ldlp~P--~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~  214 (264)
T d1i9ga_         159 LADSEL----PDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALR  214 (264)
T ss_dssp             GGGCCC----CTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             cccccc----cCCCcceEEEecCCH--HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHH
Confidence            987533    235899999998754  223333445579998876555 3344555555553

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=1.8e-13  Score=109.47  Aligned_cols=124  Identities=19%  Similarity=0.146  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhch
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKI  127 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~  127 (222)
                      .....+...+.+.+  +++|||+|||+|+++..+|+..   .+++++|+++++++.|++|++..++. ++.+...|+...
T Consensus        90 kd~~~Ii~~l~i~p--G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~  167 (266)
T d1o54a_          90 KDSSFIAMMLDVKE--GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG  167 (266)
T ss_dssp             HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred             HHHHHHHHhhCCCC--CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc
Confidence            34566777766665  9999999999999999998753   49999999999999999999999985 599999997554


Q ss_pred             hhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeC-ccchHhhHHHhh
Q 043853          128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN-PATCARDLDYLC  184 (222)
Q Consensus       128 ~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~-~~~~~~~~~~l~  184 (222)
                      ..     ...||.|+.+.|..  ...+....+.|+|+|.+.+.+. ..+..+.++.+.
T Consensus       168 ~~-----~~~~D~V~~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~  218 (266)
T d1o54a_         168 FD-----EKDVDALFLDVPDP--WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQ  218 (266)
T ss_dssp             CS-----CCSEEEEEECCSCG--GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             cc-----ccceeeeEecCCCH--HHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHH
Confidence            32     24799999998743  2223333445799998765553 344445555554

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.5e-13  Score=105.47  Aligned_cols=156  Identities=16%  Similarity=0.128  Sum_probs=102.5

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-----------------CC
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNN-----------------IS  115 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-----------------~~  115 (222)
                      +.+++...+...  ++.+|||+|||+|..+..+|+.+.+|+|+|+|+.+++.|+++.....                 ..
T Consensus        33 l~~~~~~~l~~~--~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (229)
T d2bzga1          33 LKKHLDTFLKGK--SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG  110 (229)
T ss_dssp             HHHHHHHHHTTC--CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred             HHHHHHHhcCCC--CCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC
Confidence            344555555433  47899999999999999999999999999999999999998865321                 12


Q ss_pred             cEEEEeCchhchhhhcCCCCCCCcEEEECCCC----CCccHHHHHHHH-hCCCCcEEEEeeCc----------c-chHhh
Q 043853          116 NATFVQGDLNKIGGDFGNAFPKPDIVISDPNR----PGMHMKLIKFLL-KLKAPRIVYVSCNP----------A-TCARD  179 (222)
Q Consensus       116 ~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~----~~~~~~~~~~l~-~l~~~~~v~~~~~~----------~-~~~~~  179 (222)
                      ++++.++|+.++....   ...||+|+..--.    ..........+. .++|+|.+++.+..          . ....+
T Consensus       111 ~v~~~~~d~~~l~~~~---~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~e  187 (229)
T d2bzga1         111 NISLYCCSIFDLPRTN---IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAE  187 (229)
T ss_dssp             SEEEEESCGGGGGGSC---CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHH
T ss_pred             cEEEEEcchhhccccc---cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHH
Confidence            5899999998876542   2579999765321    122344555554 47899987655521          1 11223


Q ss_pred             HHHhhccCCCCccCCCeEEeEeeeeccCCC-------CCceeEEEEEEe
Q 043853          180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPH-------TPHIECVCLLEL  221 (222)
Q Consensus       180 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~v~~~~~  221 (222)
                      +..+.        +.+|.+..+...+....       +.-.|.+-+|+|
T Consensus       188 l~~lf--------~~~~~i~~le~~~~~~~~~~~~gl~~l~e~~y~l~~  228 (229)
T d2bzga1         188 IERLF--------GKICNIRCLEKVDAFEERHKSWGIDCLFEKLYLLTE  228 (229)
T ss_dssp             HHHHH--------TTTEEEEEEEEEECCCGGGGGGTCSCCEEEEEEEEE
T ss_pred             HHHHh--------cCCCEEEEEEEecccCcchhhcCcchHhheeEEEee
Confidence            44443        56788777665553331       223556666665

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.49  E-value=7.8e-14  Score=108.17  Aligned_cols=160  Identities=20%  Similarity=0.211  Sum_probs=109.7

Q ss_pred             cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHH
Q 043853           31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNA  109 (222)
Q Consensus        31 ~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~  109 (222)
                      .+..+.++.+.+... +.+..    .+.+.+++.+  +.+|||+|||+|+.+..+|+. +.+|+++|.++.+++.|++|+
T Consensus        49 ~D~~l~i~~g~~is~-P~~~a----~ml~~L~l~~--g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l  121 (215)
T d1jg1a_          49 IDEPLPIPAGQTVSA-PHMVA----IMLEIANLKP--GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNL  121 (215)
T ss_dssp             SSSCEECSTTCEECC-HHHHH----HHHHHHTCCT--TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHH
T ss_pred             ccCCcccchhhhhhh-hhhHH----HHHHhhccCc--cceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHH
Confidence            345566666665542 33333    3445555554  889999999999999999976 458999999999999999999


Q ss_pred             HHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCC
Q 043853          110 KLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGD  189 (222)
Q Consensus       110 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~  189 (222)
                      +..++.|+.++++|..+....    ..+||.|++..........++   ..|+++|.+++..........+-.+.+    
T Consensus       122 ~~~g~~nv~~~~gd~~~g~~~----~~pfD~Iiv~~a~~~ip~~l~---~qL~~gGrLv~pv~~~~~~q~l~~~~k----  190 (215)
T d1jg1a_         122 ERAGVKNVHVILGDGSKGFPP----KAPYDVIIVTAGAPKIPEPLI---EQLKIGGKLIIPVGSYHLWQELLEVRK----  190 (215)
T ss_dssp             HHTTCCSEEEEESCGGGCCGG----GCCEEEEEECSBBSSCCHHHH---HTEEEEEEEEEEECSSSSCEEEEEEEE----
T ss_pred             HHcCCceeEEEECccccCCcc----cCcceeEEeecccccCCHHHH---HhcCCCCEEEEEEccCCccEEEEEEEE----
Confidence            999999999999999875543    248999999875444444443   456888888765432211111111110    


Q ss_pred             CccCCCeEEeEeeeeccCCCC
Q 043853          190 QNIKGCYKLKSLQPVDMFPHT  210 (222)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~p~~  210 (222)
                        -..+|....+-.+.+.|..
T Consensus       191 --~~~~~~~~~l~~v~fvPl~  209 (215)
T d1jg1a_         191 --TKDGIKIKNHGGVAFVPLI  209 (215)
T ss_dssp             --ETTEEEEEEEEEECCCBCB
T ss_pred             --ECCEEEEEEEccEEEEcCC
Confidence              1456777777677777754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.49  E-value=8.5e-14  Score=108.59  Aligned_cols=135  Identities=19%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             HHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCC
Q 043853           57 IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFP  136 (222)
Q Consensus        57 i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~  136 (222)
                      +.+.+.+.  ++++|||+|||+|+++..+|+.+.+|+++|+++.+++.|++++..  ..|+.++.+|.......    ..
T Consensus        62 ml~~L~l~--~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~----~~  133 (224)
T d1vbfa_          62 MLDELDLH--KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEE----EK  133 (224)
T ss_dssp             HHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGG----GC
T ss_pred             HHHHhhhc--ccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc--ccccccccCchhhcchh----hh
Confidence            44455544  488999999999999999999999999999999999999998764  45799999998775433    14


Q ss_pred             CCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCC
Q 043853          137 KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPH  209 (222)
Q Consensus       137 ~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~  209 (222)
                      +||.|+++.....+...+   +..|+++|.+++-.......+ +-.+.   +   ...++....+..+.+.|.
T Consensus       134 pfD~Iiv~~a~~~ip~~l---~~qLk~GGrLV~pvg~~~~q~-l~~i~---k---~~~~~~~~~l~~v~F~pl  196 (224)
T d1vbfa_         134 PYDRVVVWATAPTLLCKP---YEQLKEGGIMILPIGVGRVQK-LYKVI---K---KGNSPSLENLGEVMFGRI  196 (224)
T ss_dssp             CEEEEEESSBBSSCCHHH---HHTEEEEEEEEEEECSSSSEE-EEEEE---C---CTTSCEEEEEEEECCCBC
T ss_pred             hHHHHHhhcchhhhhHHH---HHhcCCCCEEEEEEcCCCceE-EEEEE---E---ECCceEEEEeeeEEEEEC
Confidence            799999986544444433   345789988876543322111 11111   1   134566666666665553

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.49  E-value=6.8e-14  Score=109.18  Aligned_cols=99  Identities=14%  Similarity=0.190  Sum_probs=76.4

Q ss_pred             CCCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +++.+|||+|||+|..+..+++.    +.+++|+|+|+.|++.|+++++..+.. ++++..+|..+++.      +.+|+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~------~~~d~  111 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI------KNASM  111 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC------CSEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc------cccee
Confidence            45789999999999999998864    349999999999999999999877654 48999999877643      36888


Q ss_pred             EEECCC-----CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          141 VISDPN-----RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp-----~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      +++.--     ... ...+++.+ +.|+|+|.+++..
T Consensus       112 i~~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         112 VILNFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEESCGGGSCGGG-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeeccccChhh-HHHHHHHHHHhCCCCceeeccc
Confidence            877532     122 23455555 4489999988764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=3.9e-13  Score=105.32  Aligned_cols=144  Identities=22%  Similarity=0.225  Sum_probs=96.3

Q ss_pred             CCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           64 RDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        64 ~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      ...++.+|||+|||+|+.+..+|+.+  ..|+|+|+||.|++.+++++...  +++..+.+|......... ....+|++
T Consensus        71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~-~~~~v~~i  147 (230)
T d1g8sa_          71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYAN-IVEKVDVI  147 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTT-TCCCEEEE
T ss_pred             CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCccccc-ccceeEEe
Confidence            34568999999999999999999865  48999999999999999987653  467888888877654322 11245556


Q ss_pred             EECCCCCCccHHHHHHHHh-CCCCcEEEEeeC---------ccchHhh-HHHhhccCCCCccCCCeEEeEeeeeccCCC-
Q 043853          142 ISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCN---------PATCARD-LDYLCHGVGDQNIKGCYKLKSLQPVDMFPH-  209 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~~---------~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~-  209 (222)
                      +.+.+...-...++..+.. |+|+|.++++..         +.....+ .+.|.        +.||++.+..  ++-|. 
T Consensus       148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~--------~aGF~ive~i--dL~py~  217 (230)
T d1g8sa_         148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILE--------AGGFKIVDEV--DIEPFE  217 (230)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHH--------HHTEEEEEEE--ECTTTS
T ss_pred             eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHH--------HcCCEEEEEe--cCCCCc
Confidence            6666544434454555544 899998877641         1111122 23332        5689887754  45564 


Q ss_pred             CCceeEEEEEE
Q 043853          210 TPHIECVCLLE  220 (222)
Q Consensus       210 ~~~~~~v~~~~  220 (222)
                      ..|.-.|..+.
T Consensus       218 ~~H~~vvg~y~  228 (230)
T d1g8sa_         218 KDHVMFVGIWE  228 (230)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCeEEEEEEec
Confidence            34777777654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=4.4e-13  Score=104.73  Aligned_cols=137  Identities=18%  Similarity=0.230  Sum_probs=96.9

Q ss_pred             CCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           63 LRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        63 ~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      +...++++|||+|||+|+++..+|+.   ..+|+|+|+++.+++.++++++..  .++..+..|....... ......+|
T Consensus        69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~~-~~~~~~vD  145 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEY-RALVPKVD  145 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGG-TTTCCCEE
T ss_pred             cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCcccc-cccccceE
Confidence            34456999999999999999999985   349999999999999999988654  3577888887654322 11224789


Q ss_pred             EEEECCCCCCccHHHHHHHHh-CCCCcEEEEee---------CccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCC
Q 043853          140 IVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSC---------NPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPH  209 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~  209 (222)
                      +|+.+.+.......++..+.. ++++|.++++.         .+....++...+.        +.+|++.+.  +++.|.
T Consensus       146 ~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~--------~~gf~iie~--i~L~p~  215 (227)
T d1g8aa_         146 VIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL--------SEYFEVIER--LNLEPY  215 (227)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH--------HTTSEEEEE--EECTTT
T ss_pred             EEEEEccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH--------HcCCEEEEE--EcCCCC
Confidence            999998866655666666654 89999887754         1233444444443        567888764  345553


Q ss_pred             -CCc
Q 043853          210 -TPH  212 (222)
Q Consensus       210 -~~~  212 (222)
                       ..|
T Consensus       216 ~~~H  219 (227)
T d1g8aa_         216 EKDH  219 (227)
T ss_dssp             SSSE
T ss_pred             CCce
Confidence             345

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.9e-13  Score=112.12  Aligned_cols=125  Identities=22%  Similarity=0.185  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcC-----------CCcE
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNN-----------ISNA  117 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~-----------~~~v  117 (222)
                      ..+..|...+.+.+  +.+|||+|||+|.+++.+|+.   ..+|+++|+++++++.|++|++..+           .+++
T Consensus        85 kD~~~Il~~l~i~p--G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv  162 (324)
T d2b25a1          85 KDINMILSMMDINP--GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV  162 (324)
T ss_dssp             HHHHHHHHHHTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred             ccHHHHHHHhCCCC--CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence            34566777776665  899999999999999999975   2489999999999999999998642           2469


Q ss_pred             EEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEee-CccchHhhHHHh
Q 043853          118 TFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC-NPATCARDLDYL  183 (222)
Q Consensus       118 ~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~-~~~~~~~~~~~l  183 (222)
                      ++.++|+.+....+.  ...||.||+|.|.+.   .+++.+ +.|+|+|.+.+.+ +-.+..+-++.+
T Consensus       163 ~~~~~di~~~~~~~~--~~~fD~V~LD~p~P~---~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l  225 (324)
T d2b25a1         163 DFIHKDISGATEDIK--SLTFDAVALDMLNPH---VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGI  225 (324)
T ss_dssp             EEEESCTTCCC---------EEEEEECSSSTT---TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             eEEecchhhcccccC--CCCcceEeecCcCHH---HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHH
Confidence            999999987654432  247999999987542   234444 4479999876554 333444445444

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.45  E-value=1.6e-13  Score=108.95  Aligned_cols=104  Identities=20%  Similarity=0.151  Sum_probs=78.1

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++++|||+|||+|..+..+++.+ .+++|+|+|+.|++.|++..+..+.. ++.+.++|+.......   .+.||+|++
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~---~~~fD~V~~   99 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL---GKEFDVISS   99 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC---SSCEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc---cccceEEEE
Confidence            457899999999999999888765 58999999999999999999877765 5999999996554321   247999988


Q ss_pred             CCCC-----C-CccHHHHHHHH-hCCCCcEEEEeeC
Q 043853          144 DPNR-----P-GMHMKLIKFLL-KLKAPRIVYVSCN  172 (222)
Q Consensus       144 ~pp~-----~-~~~~~~~~~l~-~l~~~~~v~~~~~  172 (222)
                      .-.-     . .....++..+. .|+|+|.+++++.
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            6431     1 11134444443 3799999887653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=9e-13  Score=106.20  Aligned_cols=108  Identities=15%  Similarity=0.098  Sum_probs=82.5

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhc
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDF  131 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~  131 (222)
                      ++.+.+.+.+.  ++++|||+|||.|+++..+++. +.+|+|+|+|+.+++.|++.++..+++. +.+...|..++.   
T Consensus        41 ~~~~~~~l~l~--~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~---  115 (280)
T d2fk8a1          41 VDLNLDKLDLK--PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  115 (280)
T ss_dssp             HHHHHTTSCCC--TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHcCCC--CCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---
Confidence            34444444433  5899999999999999988865 7799999999999999999999999865 888888877653   


Q ss_pred             CCCCCCCcEEEECCC-----CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          132 GNAFPKPDIVISDPN-----RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp-----~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                          ++||.|++.--     ... ...+.+.+.+ |+|+|.+++..
T Consensus       116 ----~~fD~i~si~~~eh~~~~~-~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         116 ----EPVDRIVSIEAFEHFGHEN-YDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             ----CCCSEEEEESCGGGTCGGG-HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ----cchhhhhHhhHHHHhhhhh-HHHHHHHHHhccCCCceEEEEE
Confidence                47999987542     122 2455665544 89999998754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=2.7e-13  Score=106.30  Aligned_cols=94  Identities=16%  Similarity=0.065  Sum_probs=72.5

Q ss_pred             CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN  146 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp  146 (222)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++.    ..  .++.+|+.+++.    +.+.||+|++.-.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~----~~--~~~~~~~~~l~~----~~~~fD~ii~~~~  111 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG----VK--NVVEAKAEDLPF----PSGAFEAVLALGD  111 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT----CS--CEEECCTTSCCS----CTTCEEEEEECSS
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeeccccccccccccc----cc--cccccccccccc----ccccccceeeecc
Confidence            4679999999999999999998889999999999999999863    22  366788888653    2358999987532


Q ss_pred             ----CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          147 ----RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       147 ----~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                          -.+. ..+++.+. .++|||++++++
T Consensus       112 ~~~~~~d~-~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         112 VLSYVENK-DKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             HHHHCSCH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhH-HHHHHHHHhhcCcCcEEEEEE
Confidence                2232 45555554 489999998876

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.43  E-value=2.8e-13  Score=102.68  Aligned_cols=103  Identities=13%  Similarity=0.019  Sum_probs=75.0

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC------------CcEEEEeCchhchhhhcCC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI------------SNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~  133 (222)
                      +++.+|||+|||+|..+..+|+.+.+|+|+|+|+.|++.|+++++..+.            .++++.++|..+...... 
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-   97 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI-   97 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH-
T ss_pred             CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc-
Confidence            3588999999999999999999999999999999999999999865432            235788888877654321 


Q ss_pred             CCCCCcEEEECCCCCCc----cHHHHHHH-HhCCCCcEEEEee
Q 043853          134 AFPKPDIVISDPNRPGM----HMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~----~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                        ..||+|++.-....+    ...+.+.+ +.++|+|.+++..
T Consensus        98 --~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          98 --GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             --HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             --cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence              368999875431111    23344444 4489999776544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=3.2e-12  Score=103.35  Aligned_cols=111  Identities=13%  Similarity=0.036  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhh
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGG  129 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~  129 (222)
                      +..+.+.+.+.+.  ++++|||+|||.|++++.+|+ .+.+++|+++|+++++.+++.++..++.+ +++...|....  
T Consensus        48 ~k~~~~~~~l~l~--~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--  123 (291)
T d1kpia_          48 AKRKLALDKLNLE--PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--  123 (291)
T ss_dssp             HHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--
T ss_pred             HHHHHHHHhcCCC--CCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--
Confidence            3355666666555  499999999999999998875 57799999999999999999999999876 89988887542  


Q ss_pred             hcCCCCCCCcEEEECCC-----CC------CccHHHHHHHHh-CCCCcEEEEee
Q 043853          130 DFGNAFPKPDIVISDPN-----RP------GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp-----~~------~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                           .++||.|++.--     ..      ...+.+.+.+.+ |+|+|.+++.+
T Consensus       124 -----~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         124 -----DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             -----CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             -----ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence                 247999987531     10      113556666655 89999988654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.41  E-value=8.3e-13  Score=106.46  Aligned_cols=111  Identities=17%  Similarity=0.189  Sum_probs=82.0

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG  129 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~  129 (222)
                      +.+++.+.+.. ..++.+|||+|||+|.++..+++.   +.+++|+|+|+.+++.|+++++..+. ++++.++|+.+++.
T Consensus        14 ~l~~l~~~~~~-~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~   91 (281)
T d2gh1a1          14 YVSFLVNTVWK-ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL   91 (281)
T ss_dssp             HHHHHHHTTSC-CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC
T ss_pred             HHHHHHHHHhc-cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccc
Confidence            44555443311 124679999999999999999875   34899999999999999999988776 69999999987643


Q ss_pred             hcCCCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          130 DFGNAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .     +.||+|++...   ..+ ...+++.+ +.++|+|.+++..
T Consensus        92 ~-----~~fD~v~~~~~l~~~~d-~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          92 N-----DKYDIAICHAFLLHMTT-PETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             S-----SCEEEEEEESCGGGCSS-HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c-----CCceEEEEehhhhcCCC-HHHHHHHHHHHcCcCcEEEEEE
Confidence            2     47999999763   122 24455554 4489999876543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=3.5e-12  Score=102.85  Aligned_cols=108  Identities=13%  Similarity=0.134  Sum_probs=82.6

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhc
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDF  131 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~  131 (222)
                      .+.+.+.+.+.  ++.+|||+|||.|++++.+|+ .+.+|+|+++|+..++.|++.++..|+.+ +++..+|..+++   
T Consensus        51 ~~~~~~~l~l~--~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---  125 (285)
T d1kpga_          51 IDLALGKLGLQ--PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---  125 (285)
T ss_dssp             HHHHHTTTTCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred             HHHHHHHcCCC--CCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---
Confidence            44555555444  589999999999999998776 46799999999999999999999888765 999999987653   


Q ss_pred             CCCCCCCcEEEECCC-----CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853          132 GNAFPKPDIVISDPN-----RPGMHMKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp-----~~~~~~~~~~~l~-~l~~~~~v~~~~  171 (222)
                          .+||.|++---     .... ..+.+.+. .|+|+|.+++..
T Consensus       126 ----~~fD~i~si~~~eh~~~~~~-~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         126 ----EPVDRIVSIGAFEHFGHERY-DAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             ----CCCSEEEEESCGGGTCTTTH-HHHHHHHHHHSCTTCEEEEEE
T ss_pred             ----ccccceeeehhhhhcCchhH-HHHHHHHHhhcCCCCcEEEEE
Confidence                37999887542     2222 45555554 489999887544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.40  E-value=2.7e-12  Score=101.98  Aligned_cols=133  Identities=14%  Similarity=0.124  Sum_probs=92.8

Q ss_pred             CCCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .+..+|||+|||+|.++..++. .+..|+++|.|+.|++.|+++...  .+++++.++|+.++...    .+.||+|++.
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--~~~~~~~~~d~~~~~~~----~~~fD~I~~~  165 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETATLP----PNTYDLIVIQ  165 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCCCC----SSCEEEEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--cccceeEEccccccccC----CCccceEEee
Confidence            4577999999999999997764 567899999999999999988653  34589999999887542    2589999998


Q ss_pred             CCCCCcc----HHHHHHHH-hCCCCcEEEEeeCcc------------ch---HhhHHHhhccCCCCccCCCeEEeEeeee
Q 043853          145 PNRPGMH----MKLIKFLL-KLKAPRIVYVSCNPA------------TC---ARDLDYLCHGVGDQNIKGCYKLKSLQPV  204 (222)
Q Consensus       145 pp~~~~~----~~~~~~l~-~l~~~~~v~~~~~~~------------~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~  204 (222)
                      ....-+.    ..+++.+. .++|+|.+++..+..            +.   ...+..+.+       +.||+++.....
T Consensus       166 ~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~-------~aGf~ii~~~~q  238 (254)
T d1xtpa_         166 WTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFN-------ESGVRVVKEAFQ  238 (254)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHH-------HHTCCEEEEEEC
T ss_pred             ccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHH-------HcCCEEEEEEee
Confidence            7522221    23344443 378999888754210            11   122333332       568998888777


Q ss_pred             ccCCCCC
Q 043853          205 DMFPHTP  211 (222)
Q Consensus       205 ~~~p~~~  211 (222)
                      .-||..-
T Consensus       239 ~~fP~~l  245 (254)
T d1xtpa_         239 EEWPTDL  245 (254)
T ss_dssp             TTCCTTS
T ss_pred             CCCCccc
Confidence            7788654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.1e-12  Score=105.49  Aligned_cols=111  Identities=24%  Similarity=0.296  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchh
Q 043853           51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIG  128 (222)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~  128 (222)
                      +...+.+.......  ++++|||+|||+|.+++.+|+.+ .+|+|+|.|+.+.. +++++..++.. +++++++|+.++.
T Consensus        21 ~~y~~ai~~~~~~~--~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~   97 (311)
T d2fyta1          21 ESYRDFIYQNPHIF--KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVH   97 (311)
T ss_dssp             HHHHHHHHHCGGGT--TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred             HHHHHHHHhccccC--CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhc
Confidence            33445554443333  37899999999999999999876 48999999998765 56666666654 5999999998875


Q ss_pred             hhcCCCCCCCcEEEECCC-----CCCccHHHHHHHHh-CCCCcEEE
Q 043853          129 GDFGNAFPKPDIVISDPN-----RPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       129 ~~~~~~~~~fD~ii~~pp-----~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      ..    ..+||+|++.+.     ..+..+.++....+ ++|+|.++
T Consensus        98 ~~----~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          98 LP----VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CS----CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             Cc----cccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            42    258999999875     23444555655543 78888775

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=1.9e-12  Score=106.54  Aligned_cols=97  Identities=31%  Similarity=0.434  Sum_probs=78.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++++|||+|||+|.+++.+|+.+ .+|+|+|.|+ +++.|+++++.++..+ ++++++|+.++...    .++||+|++.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~----~~~~D~i~se  112 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP----FPKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS----SSCEEEEEEC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCc----ccceeEEEEE
Confidence            37899999999999999998875 5999999996 6789999999998864 99999999887532    3589999997


Q ss_pred             CC-----CCCccHHHHHHHHh-CCCCcEEE
Q 043853          145 PN-----RPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       145 pp-----~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      +.     ..+....++....+ |+|+|+++
T Consensus       113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            64     34455666766644 78888875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=1e-12  Score=102.40  Aligned_cols=163  Identities=14%  Similarity=0.148  Sum_probs=103.3

Q ss_pred             ecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--------CeEEEEeCCHHH
Q 043853           30 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--------KHVYGYEVVPQA  101 (222)
Q Consensus        30 ~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--------~~v~gvD~~~~~  101 (222)
                      +.+..+.+..+.+... +.+...    +.+.+.....++++|||+|||+|+.+..+++..        .+|+++|.++.+
T Consensus        48 Y~D~~lpi~~~~~is~-P~~~a~----~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l  122 (223)
T d1r18a_          48 YMDAPQPIGGGVTISA-PHMHAF----ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAEL  122 (223)
T ss_dssp             TBSSCEEEETTEEECC-HHHHHH----HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHH
T ss_pred             cCCCCccccCCceeeh-hhhHHH----HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHH
Confidence            3444555555555432 333333    333332112348999999999999999887642        389999999999


Q ss_pred             HHHHHHHHHHc-----CCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccch
Q 043853          102 ISDACRNAKLN-----NISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATC  176 (222)
Q Consensus       102 i~~a~~n~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~  176 (222)
                      ++.|++|+...     +..|+.+.++|..+....    ..+||.|+++.........+   +..++++|.+++.......
T Consensus       123 ~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~----~~~fD~Iiv~~a~~~~p~~l---~~~Lk~gG~lV~pvg~~~~  195 (223)
T d1r18a_         123 VRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP----NAPYNAIHVGAAAPDTPTEL---INQLASGGRLIVPVGPDGG  195 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG----GCSEEEEEECSCBSSCCHHH---HHTEEEEEEEEEEESCSSS
T ss_pred             HHHHHHhhhhcchhhcCccEEEEEeccccccccc----ccceeeEEEEeechhchHHH---HHhcCCCcEEEEEEecCCC
Confidence            99999997654     445799999999876543    24799999987644444433   3456889888765432211


Q ss_pred             HhhHHHhhccCCCCccCCCeEEeEeeeeccCCC
Q 043853          177 ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPH  209 (222)
Q Consensus       177 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~  209 (222)
                      ...+..+.+     .-++.|....+..+.+.|.
T Consensus       196 ~q~l~~i~k-----~~~g~~~~~~l~~v~FvPL  223 (223)
T d1r18a_         196 SQYMQQYDK-----DANGKVEMTRLMGVMYVPL  223 (223)
T ss_dssp             CEEEEEEEE-----CTTSCEEEEEEEEECCCCC
T ss_pred             cEEEEEEEE-----eCCCcEEEEEEeeEEeecC
Confidence            111111111     1134577777777776663

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.37  E-value=1e-12  Score=102.43  Aligned_cols=95  Identities=17%  Similarity=0.179  Sum_probs=75.1

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-  146 (222)
                      +.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++..    .++.++++|+.+....     ++||+|++.-. 
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~-----~~fD~I~~~~vl   91 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLP-----RRYDNIVLTHVL   91 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCS-----SCEEEEEEESCG
T ss_pred             CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc----cccccccccccccccc-----ccccccccccee
Confidence            6689999999999999999888899999999999999997742    3599999999876532     58999988653 


Q ss_pred             -CCCccHHHHHHHH-h-CCCCcEEEEee
Q 043853          147 -RPGMHMKLIKFLL-K-LKAPRIVYVSC  171 (222)
Q Consensus       147 -~~~~~~~~~~~l~-~-l~~~~~v~~~~  171 (222)
                       .-.-...++..+. + ++|+|.++++.
T Consensus        92 eh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          92 EHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             GGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence             1122345556654 4 79999998775

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.6e-12  Score=106.54  Aligned_cols=97  Identities=24%  Similarity=0.314  Sum_probs=77.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++++|||+|||+|.+++.+|+.+ .+|+|+|.|+. ...++++++.++..+ ++++++|+.++...    .++||+|++.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~----~~~~D~ivs~  107 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELP----VEKVDIIISE  107 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SSCEEEEEEC
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccc----cceeEEEeee
Confidence            37899999999999999999875 58999999975 578888999998865 99999999887542    2589999997


Q ss_pred             CC-----CCCccHHHHHHHHh-CCCCcEEE
Q 043853          145 PN-----RPGMHMKLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       145 pp-----~~~~~~~~~~~l~~-l~~~~~v~  168 (222)
                      ..     ..+..+.++..+.+ ++|+|.++
T Consensus       108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         108 WMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            64     33445667776654 78888775

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=4.4e-12  Score=102.52  Aligned_cols=116  Identities=16%  Similarity=0.124  Sum_probs=80.9

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC----cEEEEeCchhchhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS----NATFVQGDLNKIGG  129 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~----~v~~~~~d~~~~~~  129 (222)
                      .+++.+.+...  ++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++....+..    ...+...|+.....
T Consensus        45 ~~~l~~~l~~~--~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          45 KAWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHHHHT--TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHHhhhc--CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            34555554333  3679999999999999999998889999999999999999999877653    25666777765543


Q ss_pred             hcCCCCCCCcEEEECC------CCC-C---ccHHHHHHHH-hCCCCcEEEEeeC
Q 043853          130 DFGNAFPKPDIVISDP------NRP-G---MHMKLIKFLL-KLKAPRIVYVSCN  172 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~p------p~~-~---~~~~~~~~l~-~l~~~~~v~~~~~  172 (222)
                      ... ..+.||.|++..      |.. .   -...+++.+. .|+|+|+++++..
T Consensus       123 ~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         123 DVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            322 224799998742      111 1   1123444443 4899999988653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1e-12  Score=102.82  Aligned_cols=101  Identities=10%  Similarity=-0.033  Sum_probs=76.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      ++.+|||+|||+|..+..+++.. .+++|+|+|+.+++.|+++.+..+. ++.++.+|+......+.  ...||.|+.|.
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~fD~i~fD~  129 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLP--DGHFDGILYDT  129 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSC--TTCEEEEEECC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccc--cccccceeecc
Confidence            47899999999999999998764 5899999999999999999876554 48888999877655443  25899999987


Q ss_pred             CCCC-------ccHHHHHHH-HhCCCCcEEEEe
Q 043853          146 NRPG-------MHMKLIKFL-LKLKAPRIVYVS  170 (222)
Q Consensus       146 p~~~-------~~~~~~~~l-~~l~~~~~v~~~  170 (222)
                      ....       ....+++.+ +.|+|||++.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            5221       123344444 348999987653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=1.1e-11  Score=103.42  Aligned_cols=136  Identities=20%  Similarity=0.205  Sum_probs=101.7

Q ss_pred             eeeeecCeeEEEcCC-------ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEe
Q 043853           26 ITETLRGLTFQISAN-------SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYE   96 (222)
Q Consensus        26 ~~~~~~~~~~~~~~~-------~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD   96 (222)
                      ++.++++.++.++..       .||.+.......+.-.+....     ++.+|||.+||+|..++..+..  ...|+++|
T Consensus         2 ~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~-----~~~~vLD~~sasG~rsiRya~E~~~~~V~~nD   76 (375)
T d2dula1           2 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL-----NPKIVLDALSATGIRGIRFALETPAEEVWLND   76 (375)
T ss_dssp             EEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH-----CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEE
T ss_pred             eEEEeCcEEEEecCCCCCCCCCcccCHHHhhhhHHHHHHHHHh-----CCCEEEEcCCCccHHHHHHHHhCCCCEEEEec
Confidence            466778888877632       799765566665544444443     3679999999999999987753  34899999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc---------------EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHH-HHHh
Q 043853           97 VVPQAISDACRNAKLNNISN---------------ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIK-FLLK  160 (222)
Q Consensus        97 ~~~~~i~~a~~n~~~~~~~~---------------v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~-~l~~  160 (222)
                      +|+.+++.+++|++.|++++               +.+.+.|+.......   ...||+|.+||.  +....+++ +++.
T Consensus        77 is~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~---~~~fDvIDiDPf--Gs~~pfldsAi~a  151 (375)
T d2dula1          77 ISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDPF--GSPMEFLDTALRS  151 (375)
T ss_dssp             SCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECCS--SCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhh---cCcCCcccCCCC--CCcHHHHHHHHHH
Confidence            99999999999999997642               678888887776542   247999999985  33345555 5566


Q ss_pred             CCCCcEEEEee
Q 043853          161 LKAPRIVYVSC  171 (222)
Q Consensus       161 l~~~~~v~~~~  171 (222)
                      ++.+|++++++
T Consensus       152 ~~~~Gll~vTa  162 (375)
T d2dula1         152 AKRRGILGVTA  162 (375)
T ss_dssp             EEEEEEEEEEE
T ss_pred             hccCCEEEEEe
Confidence            88899999887

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=5.2e-12  Score=103.76  Aligned_cols=164  Identities=20%  Similarity=0.152  Sum_probs=105.3

Q ss_pred             ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc----C---CeEEEEeCCHHHHHHHHHHHHHcC
Q 043853           41 SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW----V---KHVYGYEVVPQAISDACRNAKLNN  113 (222)
Q Consensus        41 ~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~----~---~~v~gvD~~~~~i~~a~~n~~~~~  113 (222)
                      .++ ++......+..++..++...  ++.+|+|++||+|.+++.+.+.    .   .+++|+|+++.+++.|+.|+..++
T Consensus        94 ~~~-TP~~i~~~m~~l~~~~~~~~--~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~  170 (328)
T d2f8la1          94 HQM-TPDSIGFIVAYLLEKVIQKK--KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  170 (328)
T ss_dssp             GCC-CCHHHHHHHHHHHHHHHTTC--SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             eEE-CcHHHHHHHHHHHHHHhCCC--CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence            444 34667776777666665433  3678999999999999977542    1   179999999999999999998887


Q ss_pred             CCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC--------------------ccHHHHH-HHHhCCCCcEEEEeeC
Q 043853          114 ISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG--------------------MHMKLIK-FLLKLKAPRIVYVSCN  172 (222)
Q Consensus       114 ~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~--------------------~~~~~~~-~l~~l~~~~~v~~~~~  172 (222)
                      .. ..+.++|......     ..+||+|++|||+..                    ....+++ .+..++++|.+.+-..
T Consensus       171 ~~-~~~~~~d~~~~~~-----~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p  244 (328)
T d2f8la1         171 QK-MTLLHQDGLANLL-----VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  244 (328)
T ss_dssp             CC-CEEEESCTTSCCC-----CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hh-hhhhccccccccc-----cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence            64 6677777655332     258999999999421                    1112233 4555788886543322


Q ss_pred             c----cchHhhHHHhhccCCCCccCCCeEEeEee--eeccCCCCCceeEEEEEEe
Q 043853          173 P----ATCARDLDYLCHGVGDQNIKGCYKLKSLQ--PVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       173 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~v~~~~~  221 (222)
                      .    ......++...        ...+.+..+.  |-+.|+.+..-.+|.+|.+
T Consensus       245 ~~~l~~~~~~~lR~~L--------~~~~~i~~ii~lp~~~F~~~~~~t~ilvl~K  291 (328)
T d2f8la1         245 DAMFGTSDFAKVDKFI--------KKNGHIEGIIKLPETLFKSEQARKSILILEK  291 (328)
T ss_dssp             GGGGGSTTHHHHHHHH--------HHHEEEEEEEECCGGGSCC-CCCEEEEEEEE
T ss_pred             CccccCchhHHHHHHH--------HhCCcEEEEEECCccccCCCCCCeEEEEEEC
Confidence            1    11122233221        1223333332  4578999888899999876

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-11  Score=95.91  Aligned_cols=104  Identities=17%  Similarity=0.028  Sum_probs=85.8

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcC--CCCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFG--NAFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~--~~~~~fD~i  141 (222)
                      .++|||+|||+|+-++++|+.   ..+++++|.+++..+.|+++++..|+.+ ++++.+|+.+....+.  ....+||+|
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i  139 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  139 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence            689999999999999999875   3499999999999999999999999976 9999999988765432  123579999


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      ++|-.+..+...+...+..+++||+++++-
T Consensus       140 fiD~dk~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         140 VVDADKENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             EECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEeCCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence            999877666555555666689999988654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=8.7e-12  Score=99.71  Aligned_cols=94  Identities=20%  Similarity=0.204  Sum_probs=73.1

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+|||+|.++..+++..+  +++|+|+|+.|++.|+++.     +++++.++|+.+++..    ++.||+|++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~----~~sfD~v~~  153 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFS----DTSMDAIIR  153 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBC----TTCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhccCC----CCCEEEEee
Confidence            4568999999999999999988753  8999999999999998763     4689999999887642    357999987


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      ......    +.+..+.++|+|.++++..
T Consensus       154 ~~~~~~----~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         154 IYAPCK----AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ESCCCC----HHHHHHHEEEEEEEEEEEE
T ss_pred             cCCHHH----HHHHHHHhCCCcEEEEEee
Confidence            643221    2334445799999887763

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.29  E-value=2.6e-11  Score=94.48  Aligned_cols=103  Identities=10%  Similarity=0.052  Sum_probs=85.0

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC---CCCCcE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA---FPKPDI  140 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~---~~~fD~  140 (222)
                      .++|||+|+++|+-++.+|+.   ..+++++|.+++..+.|+++++..|..+ ++++.+|+.+....+...   .+.||+
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~  139 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  139 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence            689999999999999999875   3599999999999999999999999976 999999998887655211   247999


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ||+|-.+..+...+...+..++++|+++++
T Consensus       140 iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         140 IFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             EEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            999987666554555555668999988765

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=7e-12  Score=96.12  Aligned_cols=88  Identities=15%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-  146 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-  146 (222)
                      +.+|||+|||+|.++..++    +++|+|.|+.+++.|+++       +++++++|+.+++..    .+.||+|++.-- 
T Consensus        37 ~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~----~~~fD~I~~~~~l  101 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLK----DESFDFALMVTTI  101 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSC----TTCEEEEEEESCG
T ss_pred             CCeEEEECCCCcccccccc----eEEEEeCChhhccccccc-------ccccccccccccccc----ccccccccccccc
Confidence            5689999999999988774    468999999999999874       589999999887542    358999998753 


Q ss_pred             --CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853          147 --RPGMHMKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       147 --~~~~~~~~~~~l-~~l~~~~~v~~~~  171 (222)
                        -.+. ..++..+ +.++|+|.+++..
T Consensus       102 ~h~~d~-~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_         102 CFVDDP-ERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             GGSSCH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccc-ccchhhhhhcCCCCceEEEEe
Confidence              2233 3444444 4589999887665

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.27  E-value=8.9e-11  Score=92.84  Aligned_cols=98  Identities=18%  Similarity=0.162  Sum_probs=73.4

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.+++++...++. +++++.+|+.+...      ..||+|++
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~------~~~D~v~~  152 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP------RKADAIIL  152 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS------SCEEEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc------cchhheee
Confidence            468999999999999999998754  8889998 67999999999998875 49999999866322      36999987


Q ss_pred             CCCCCCcc----HHHHHHHH-hCCCCcEEEEee
Q 043853          144 DPNRPGMH----MKLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~----~~~~~~l~-~l~~~~~v~~~~  171 (222)
                      .---..+.    ..+++.+. .|+|+|.+++..
T Consensus       153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            64311111    23444443 388998877643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=2.8e-11  Score=93.58  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCC--CCCCCcEE
Q 043853           68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGN--AFPKPDIV  141 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~--~~~~fD~i  141 (222)
                      .++|||+|||+|..++.+|+.   +.+++++|+++.+++.|+++++..|+.+ ++++.+|+.+....+..  ....||+|
T Consensus        57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i  136 (214)
T d2cl5a1          57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  136 (214)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred             CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence            579999999999999999874   4599999999999999999999999976 99999999887655431  23479999


Q ss_pred             EECCCCCCccH--HHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHM--KLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~--~~~~~l~~l~~~~~v~~~  170 (222)
                      ++|........  .+.+.+..++|||+++++
T Consensus       137 fiD~~~~~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         137 FLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             eecccccccccHHHHHHHhCccCCCcEEEEe
Confidence            99964332211  223333447899987654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.7e-11  Score=98.72  Aligned_cols=112  Identities=18%  Similarity=0.173  Sum_probs=78.3

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc-------C--CCcEEEEeCch
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN-------N--ISNATFVQGDL  124 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~-------~--~~~v~~~~~d~  124 (222)
                      .+.+.+++.  ++++|||+|||+|.+++.+|+.  +.+++|+|+++.+++.|+++.+..       |  ..+++++++|+
T Consensus       142 ~~~~~~~l~--~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         142 QMIDEIKMT--DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHSCCC--TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHcCCC--CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            344555444  4889999999999999988764  448999999999999998887653       2  34699999999


Q ss_pred             hchhhhcCCCCCCCcEEEECCCC--CCccHHHHHHHHhCCCCcEEEEee
Q 043853          125 NKIGGDFGNAFPKPDIVISDPNR--PGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       125 ~~~~~~~~~~~~~fD~ii~~pp~--~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      .+.+..-.  ....|+|+++--.  ..+...+.+..+.++||+.++...
T Consensus       220 ~~~~~~~~--~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         220 LSEEWRER--IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             TSHHHHHH--HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccccc--cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            87653211  0136888886431  123334444455589999887543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.2e-10  Score=91.75  Aligned_cols=60  Identities=8%  Similarity=-0.013  Sum_probs=46.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCC
Q 043853           55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNI  114 (222)
Q Consensus        55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~  114 (222)
                      +.+.+.+.....++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|+++++..+.
T Consensus        39 ~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~   99 (257)
T d2a14a1          39 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPG   99 (257)
T ss_dssp             HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccc
Confidence            3344444333445789999999999998877654 44899999999999999999876543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.18  E-value=5e-10  Score=87.49  Aligned_cols=98  Identities=11%  Similarity=0.077  Sum_probs=74.7

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG  132 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  132 (222)
                      +++.+.+.++..  ++++|||+|||+|.+|..+++.+.+++++|+|+.+++.++++...  .++++++++|+.++...  
T Consensus         9 i~~~iv~~~~~~--~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~--   82 (235)
T d1qama_           9 NIDKIMTNIRLN--EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFP--   82 (235)
T ss_dssp             HHHHHHTTCCCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCC--
T ss_pred             HHHHHHHhcCCC--CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhcccc--
Confidence            344455555433  489999999999999999999899999999999999999987643  35799999999887532  


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHHHH
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~l~  159 (222)
                       . .....|++|.|+.- ..+++..+.
T Consensus        83 -~-~~~~~vv~NLPYnI-ss~il~~ll  106 (235)
T d1qama_          83 -K-NQSYKIFGNIPYNI-STDIIRKIV  106 (235)
T ss_dssp             -S-SCCCEEEEECCGGG-HHHHHHHHH
T ss_pred             -c-cccceeeeeehhhh-hHHHHHHHH
Confidence             1 23457899999754 445555543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.08  E-value=2.9e-09  Score=84.18  Aligned_cols=98  Identities=17%  Similarity=0.089  Sum_probs=73.0

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.++++++..+..+ +++..+|..+...      ..||++++
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p------~~~D~v~~  153 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP------VTADVVLL  153 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS------CCEEEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc------ccchhhhc
Confidence            467999999999999999998754  8999997 889999999999888764 9999999876322      36999987


Q ss_pred             CCCCCCcc----HHHHHHH-HhCCCCcEEEEee
Q 043853          144 DPNRPGMH----MKLIKFL-LKLKAPRIVYVSC  171 (222)
Q Consensus       144 ~pp~~~~~----~~~~~~l-~~l~~~~~v~~~~  171 (222)
                      .---....    ..+++.+ +.++|+|.+++..
T Consensus       154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            64311111    2344444 3478888766543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.07  E-value=7.5e-10  Score=93.80  Aligned_cols=162  Identities=20%  Similarity=0.281  Sum_probs=102.9

Q ss_pred             CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---------------CeEEEEeCCHHHHHH
Q 043853           40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---------------KHVYGYEVVPQAISD  104 (222)
Q Consensus        40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---------------~~v~gvD~~~~~i~~  104 (222)
                      +.||. +......    +.+++.  +.++.+|+|++||+|++.+.+.+..               ..++|+|+++.+...
T Consensus       142 G~f~T-P~~Iv~~----mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~l  214 (425)
T d2okca1         142 GQYFT-PRPLIQA----MVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL  214 (425)
T ss_dssp             GGGCC-CHHHHHH----HHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred             hhhcc-chhhhHh----hheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHH
Confidence            44554 4555544    444443  2347899999999999999776531               249999999999999


Q ss_pred             HHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC-------------------ccHHHHHH-HHhCC
Q 043853          105 ACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG-------------------MHMKLIKF-LLKLK  162 (222)
Q Consensus       105 a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~-------------------~~~~~~~~-l~~l~  162 (222)
                      |+-|+..++..  +..+..+|..+...     ...||+|++|||...                   ....++.. +..++
T Consensus       215 a~~n~~l~g~~~~~~~i~~~d~l~~~~-----~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk  289 (425)
T d2okca1         215 ASMNLYLHGIGTDRSPIVCEDSLEKEP-----STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK  289 (425)
T ss_dssp             HHHHHHHTTCCSSCCSEEECCTTTSCC-----SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE
T ss_pred             HHhhhhhcCCccccceeecCchhhhhc-----ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcC
Confidence            99999988874  36677888765432     257999999999311                   11224443 34477


Q ss_pred             CCcEEEEeeCc-----cchHhhHH-HhhccCCCCccCCCeEEeE--eeeeccCCCCCceeEEEEEEeC
Q 043853          163 APRIVYVSCNP-----ATCARDLD-YLCHGVGDQNIKGCYKLKS--LQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       163 ~~~~v~~~~~~-----~~~~~~~~-~l~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                      ++|.+.+-...     ......++ .+.        +. +.+..  .-|-.+|+.+..-.+|.+|.++
T Consensus       290 ~~G~~~iI~p~~~L~~~~~~~~iR~~Ll--------~~-~~i~aIi~LP~~~F~~t~v~t~Ilil~K~  348 (425)
T d2okca1         290 TGGRAAVVLPDNVLFEAGAGETIRKRLL--------QD-FNLHTILRLPTGIFYAQGVKANVLFFSKG  348 (425)
T ss_dssp             EEEEEEEEEEHHHHHCSTHHHHHHHHHH--------HH-EEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred             CCCeEEEEechHHhhhhhhHHHHHHHHH--------Hh-cchhHhhcCCcccccCCCCCeEEEEEECC
Confidence            77754322211     11122333 332        22 22222  2355789888888999999873

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.05  E-value=3.9e-10  Score=86.82  Aligned_cols=144  Identities=17%  Similarity=0.138  Sum_probs=89.0

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD  130 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~  130 (222)
                      .+++.+++...  ++.+|||+|||+|.++..+.+.   ...++|+|+++.++..++         ...++++|.......
T Consensus         8 ~~~m~~l~~~~--~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---------~~~~~~~~~~~~~~~   76 (223)
T d2ih2a1           8 VDFMVSLAEAP--RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---------WAEGILADFLLWEPG   76 (223)
T ss_dssp             HHHHHHHCCCC--TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---------TEEEEESCGGGCCCS
T ss_pred             HHHHHHhcCCC--CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---------cceeeeeehhccccc
Confidence            34455555433  4789999999999999877653   347999999987654332         367888888665432


Q ss_pred             cCCCCCCCcEEEECCCCCC-------------------------------ccHHHH-HHHHhCCCCcEE-EEeeCc---c
Q 043853          131 FGNAFPKPDIVISDPNRPG-------------------------------MHMKLI-KFLLKLKAPRIV-YVSCNP---A  174 (222)
Q Consensus       131 ~~~~~~~fD~ii~~pp~~~-------------------------------~~~~~~-~~l~~l~~~~~v-~~~~~~---~  174 (222)
                           ..||++++|||...                               +...++ ..+..++++|.+ ++..+.   .
T Consensus        77 -----~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~  151 (223)
T d2ih2a1          77 -----EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL  151 (223)
T ss_dssp             -----SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC
T ss_pred             -----cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccC
Confidence                 57999999999321                               111222 234446777665 333221   1


Q ss_pred             chHhhHH-HhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEeC
Q 043853          175 TCARDLD-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS  222 (222)
Q Consensus       175 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~  222 (222)
                      .....++ .+.        +. +.+....+-+.|+.+.--.+|.+|.++
T Consensus       152 ~~~~~lR~~l~--------~~-~~i~i~~~~~~F~~~~v~t~i~~~~k~  191 (223)
T d2ih2a1         152 EDFALLREFLA--------RE-GKTSVYYLGEVFPQKKVSAVVIRFQKS  191 (223)
T ss_dssp             GGGHHHHHHHH--------HH-SEEEEEEEESCSTTCCCCEEEEEEESS
T ss_pred             cchHHHHHHHH--------hc-CCEEEEcchhcCCCCCCcEEEEEEEeC
Confidence            1122332 222        22 233344567889998888888888763

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=5.8e-10  Score=93.49  Aligned_cols=114  Identities=15%  Similarity=0.171  Sum_probs=72.8

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC---------CCcEEE-Ee
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN---------ISNATF-VQ  121 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~---------~~~v~~-~~  121 (222)
                      +..+.+.+.+.+  +++|||||||+|.+++.+|+.  +.+++|||+++.+++.|+++++..+         ...+.+ ..
T Consensus       205 i~~Il~~l~Lkp--gd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         205 LSDVYQQCQLKK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHTTCCT--TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHhCCCC--CCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            333455555444  889999999999999988865  4589999999999999999987643         122333 34


Q ss_pred             CchhchhhhcCCCCCCCcEEEECCC--CCCccHHHHHHHHhCCCCcEEEEe
Q 043853          122 GDLNKIGGDFGNAFPKPDIVISDPN--RPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       122 ~d~~~~~~~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ++..+.... .......|+++++--  ...+...+.+..+.|+|||.++++
T Consensus       283 ~~f~~~~~~-d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         283 KSFVDNNRV-AELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             SCSTTCHHH-HHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             echhhcccc-ccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            443322110 001125789988632  122333344445558999988754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.2e-09  Score=84.83  Aligned_cols=82  Identities=11%  Similarity=0.200  Sum_probs=68.5

Q ss_pred             CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++.+|||++||.|+-+..+|..   ...++++|+++.-++.+++|++..|++++.+...|...+..... ....||.|+
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~-~~~~fD~VL  171 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP-RYHEVHYIL  171 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG-GGTTEEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc-ccceeeEEe
Confidence            45889999999999999887753   45899999999999999999999999999999999877654321 114799999


Q ss_pred             ECCCCC
Q 043853          143 SDPNRP  148 (222)
Q Consensus       143 ~~pp~~  148 (222)
                      +|+|.+
T Consensus       172 ~DaPCS  177 (293)
T d2b9ea1         172 LDPSCS  177 (293)
T ss_dssp             ECCCCC
T ss_pred             ecCccc
Confidence            999943

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.1e-09  Score=85.80  Aligned_cols=99  Identities=23%  Similarity=0.278  Sum_probs=78.0

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhc
Q 043853           53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDF  131 (222)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~  131 (222)
                      +.+.+.+.++..  +++.|||+|+|.|.+|..+++.+.+++++|+|+.+++..++.+..... .+++++.+|+.++..  
T Consensus         9 i~~kIv~~~~~~--~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~--   84 (278)
T d1zq9a1           9 IINSIIDKAALR--PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--   84 (278)
T ss_dssp             HHHHHHHHTCCC--TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred             HHHHHHHHhCCC--CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh--
Confidence            445566666544  378999999999999999999889999999999999999998876544 469999999988643  


Q ss_pred             CCCCCCCcEEEECCCCCCccHHHHHHHHh
Q 043853          132 GNAFPKPDIVISDPNRPGMHMKLIKFLLK  160 (222)
Q Consensus       132 ~~~~~~fD~ii~~pp~~~~~~~~~~~l~~  160 (222)
                          +.++.|++|.|+.- ...++..+..
T Consensus        85 ----~~~~~vV~NLPY~I-ss~il~~~~~  108 (278)
T d1zq9a1          85 ----PFFDTCVANLPYQI-SSPFVFKLLL  108 (278)
T ss_dssp             ----CCCSEEEEECCGGG-HHHHHHHHHH
T ss_pred             ----hhhhhhhcchHHHH-HHHHHHHHHh
Confidence                25778999999754 4555555443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.8e-10  Score=89.10  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=70.8

Q ss_pred             CCeEEEEecccchhHHHHhhc--------CCeEEEEeCCHHHHHHHHHHHHHc-CCCc--EEEEeCchhchhhhc--CCC
Q 043853           68 SEIVLDLFCGTGTIGLTLARW--------VKHVYGYEVVPQAISDACRNAKLN-NISN--ATFVQGDLNKIGGDF--GNA  134 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~--------~~~v~gvD~~~~~i~~a~~n~~~~-~~~~--v~~~~~d~~~~~~~~--~~~  134 (222)
                      ..+|||+|||+|.++..+++.        ...++|+|.|+.|++.|+++++.. .+++  +.+...++.++....  ..+
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            347999999999998876542        126899999999999999998653 2344  466677776543221  123


Q ss_pred             CCCCcEEEECCC--CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853          135 FPKPDIVISDPN--RPGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       135 ~~~fD~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .+.||+|++.-.  +-.-...+++.+.+ ++|+|.+++.+
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            468999988653  11123455665544 78999877665

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.97  E-value=1.6e-10  Score=90.93  Aligned_cols=104  Identities=15%  Similarity=0.160  Sum_probs=76.6

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN  133 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  133 (222)
                      ++.+.+.+...  +++.|||+|||+|.+|..+++.+.+++++|+|+.+++.++++...  .++++++++|+.++...   
T Consensus        18 i~kIv~~~~~~--~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~~~~---   90 (245)
T d1yuba_          18 LNQIIKQLNLK--ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQFQFP---   90 (245)
T ss_dssp             HHHHHHHCCCC--SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTTTCC---
T ss_pred             HHHHHHhcCCC--CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh--ccchhhhhhhhhccccc---
Confidence            34455555444  378999999999999999999999999999999999988776542  35799999999887542   


Q ss_pred             CCCCCcEEEECCCCCCccHHHHHHHHhCCCCc
Q 043853          134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPR  165 (222)
Q Consensus       134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~  165 (222)
                       ...++.|++|.|+.-..+-+...+.......
T Consensus        91 -~~~~~~vv~NLPY~Ist~il~~~l~~~~~~~  121 (245)
T d1yuba_          91 -NKQRYKIVGNIPYHLSTQIIKKVVFESRASD  121 (245)
T ss_dssp             -CSSEEEEEEECCSSSCHHHHHHHHHHCCCEE
T ss_pred             -cceeeeEeeeeehhhhHHHHHHHhhhchhhh
Confidence             2356789999997654444444444433333

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.5e-09  Score=83.28  Aligned_cols=56  Identities=7%  Similarity=0.052  Sum_probs=43.0

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHHHHHHHH
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAKL  111 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a~~n~~~  111 (222)
                      .+.+........+.++||+|||+|.+++ .+++.+.+|+|+|+|+.|++.++++++.
T Consensus        43 ~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          43 CLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             HHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            3444433333457899999999998876 4445677999999999999999988754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=1.7e-08  Score=81.86  Aligned_cols=80  Identities=19%  Similarity=0.184  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853           65 DDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        65 ~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      +.++++|||++||.|+=+..++..   ...++++|.++.-++.+++|++..++.++.+...|.......    ...||.|
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~----~~~fD~I  189 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL----NVEFDKI  189 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG----CCCEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccc----cccccEE
Confidence            345899999999999999888754   347999999999999999999999999999999888776432    2479999


Q ss_pred             EECCCCC
Q 043853          142 ISDPNRP  148 (222)
Q Consensus       142 i~~pp~~  148 (222)
                      ++|+|.+
T Consensus       190 LvDaPCS  196 (313)
T d1ixka_         190 LLDAPCT  196 (313)
T ss_dssp             EEECCTT
T ss_pred             EEccccc
Confidence            9999943

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.1e-08  Score=86.88  Aligned_cols=166  Identities=19%  Similarity=0.221  Sum_probs=98.7

Q ss_pred             CCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc----C----------------CeEEEEeCC
Q 043853           39 ANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW----V----------------KHVYGYEVV   98 (222)
Q Consensus        39 ~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~----~----------------~~v~gvD~~   98 (222)
                      .+.||.| ......    +.+++.  +.++.+|+|.+||+|++.+.+.+.    .                ..++|+|++
T Consensus       143 ~GqfyTP-~~Iv~~----mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~  215 (524)
T d2ar0a1         143 AGQYFTP-RPLIKT----IIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV  215 (524)
T ss_dssp             --CCCCC-HHHHHH----HHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC
T ss_pred             cchhccc-cchhHh----hhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccC
Confidence            3567753 455444    444443  234779999999999999866542    1                158999999


Q ss_pred             HHHHHHHHHHHHHcCCCc-----EEEEeCchhchhhhcCCCCCCCcEEEECCCCCC----------------ccHHHHH-
Q 043853           99 PQAISDACRNAKLNNISN-----ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG----------------MHMKLIK-  156 (222)
Q Consensus        99 ~~~i~~a~~n~~~~~~~~-----v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~----------------~~~~~~~-  156 (222)
                      +.+...|+-|+..++.+.     -.+..++.......   ...+||+|++|||...                ....++. 
T Consensus       216 ~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~---~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~  292 (524)
T d2ar0a1         216 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE---NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH  292 (524)
T ss_dssp             HHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH---TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccccccchhhhhhhhhhccc---ccccceeEEecCCccccccccchhhhccccccccHHHHHH
Confidence            999999999998877631     23344444332221   2247999999999421                1122444 


Q ss_pred             HHHhCCCCcEEEEeeC--c---cchHhhHH-HhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          157 FLLKLKAPRIVYVSCN--P---ATCARDLD-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       157 ~l~~l~~~~~v~~~~~--~---~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      .+..|+++|.+.+-..  .   ......++ .+.+       .....-+-.-|-.+|+.+..-.+|.+|.|
T Consensus       293 ~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~-------~~~i~aII~LP~~~F~~t~i~t~Il~l~K  356 (524)
T d2ar0a1         293 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD-------KCHLHTILRLPTGIFYAQGVKTNVLFFTK  356 (524)
T ss_dssp             HHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH-------HEEEEEEEECCSSCSSSCSCCEEEEEEEE
T ss_pred             HHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHH-------cCCceEEEECCCCcCCCCCCCeEEEEEEC
Confidence            3455788776533321  1   11122333 3321       11222222335678988998999999986

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=4.1e-09  Score=79.70  Aligned_cols=80  Identities=15%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             CCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-CCCCCcEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-AFPKPDIVI  142 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~ii  142 (222)
                      .++..+||++||+|+.+..+++.  ..+++|+|.++.|++.|+++++..+. ++.+++++..++...+.. ..+.||.|+
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f~~~~~~~~~~~~~~vdgIl  100 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSYREADFLLKTLGIEKVDGIL  100 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc-cccchhHHHhhHHHHHHHcCCCCcceee
Confidence            35889999999999999988875  35999999999999999999877653 599999988765432211 125899999


Q ss_pred             ECCC
Q 043853          143 SDPN  146 (222)
Q Consensus       143 ~~pp  146 (222)
                      .|..
T Consensus       101 ~DlG  104 (192)
T d1m6ya2         101 MDLG  104 (192)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            9875

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.83  E-value=7.8e-09  Score=80.88  Aligned_cols=89  Identities=19%  Similarity=0.164  Sum_probs=70.8

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcC---------CCcEEEEeCchhc
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNN---------ISNATFVQGDLNK  126 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~---------~~~v~~~~~d~~~  126 (222)
                      .+...+.+......+|||+.||.|..++.+|..+.+|+++|.+|.+....+++++...         ..+++++++|..+
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~  156 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH
Confidence            4445555555445689999999999999999989999999999999888887765432         1369999999999


Q ss_pred             hhhhcCCCCCCCcEEEECCCC
Q 043853          127 IGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus       127 ~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +..+..   +.||+|++||+.
T Consensus       157 ~L~~~~---~~~DvIYlDPMF  174 (250)
T d2oyra1         157 ALTDIT---PRPQVVYLDPMF  174 (250)
T ss_dssp             HSTTCS---SCCSEEEECCCC
T ss_pred             HHhccC---CCCCEEEECCCC
Confidence            887543   479999999963

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.7e-08  Score=80.89  Aligned_cols=117  Identities=15%  Similarity=0.190  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++.+|||+++|.|+-+..++...  ..++++|.++.-++..+++++..|++++.....|.......   ....||.|++
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~---~~~~fd~IL~  177 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC---GEQQFDRILL  177 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH---TTCCEEEEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhc---ccccccEEEE
Confidence            458899999999999999888653  48999999999999999999999998777766665433222   1247999999


Q ss_pred             CCCCCCc------------------------cHHHHHHHH-hCCCCc-EEEEeeC--ccchHhhHHHhhc
Q 043853          144 DPNRPGM------------------------HMKLIKFLL-KLKAPR-IVYVSCN--PATCARDLDYLCH  185 (222)
Q Consensus       144 ~pp~~~~------------------------~~~~~~~l~-~l~~~~-~v~~~~~--~~~~~~~~~~l~~  185 (222)
                      |+|.++.                        +..+++... .++++| +||.+|.  +..-...++.+.+
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~  247 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ  247 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHH
Confidence            9994432                        122222222 256655 5787774  4555555665554

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.5e-07  Score=71.59  Aligned_cols=135  Identities=15%  Similarity=0.157  Sum_probs=95.2

Q ss_pred             CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +.+++|+|||.|.-++.+|-..  .+++.+|.+..-+...++-+...+++|++++++.+.+....     ..||+|++=.
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~-----~~fD~V~sRA  140 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE-----PPFDGVISRA  140 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCC-----SCEEEEECSC
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccc-----cccceehhhh
Confidence            5799999999999999888654  49999999999999999999999999999999999886432     4799998843


Q ss_pred             CCCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEE
Q 043853          146 NRPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE  220 (222)
Q Consensus       146 p~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~  220 (222)
                      -  .....+++.... ++++|.+++-... ....++..+         ..+|++.....+. .|....-..+.+++
T Consensus       141 ~--~~~~~ll~~~~~~l~~~g~~~~~KG~-~~~eEl~~~---------~~~~~~~~~~~~~-~p~~~~~R~iv~ik  203 (207)
T d1jsxa_         141 F--ASLNDMVSWCHHLPGEQGRFYALKGQ-MPEDEIALL---------PEEYQVESVVKLQ-VPALDGERHLVVIK  203 (207)
T ss_dssp             S--SSHHHHHHHHTTSEEEEEEEEEEESS-CCHHHHHTS---------CTTEEEEEEEEEE-CC--CCEEEEEEEE
T ss_pred             h--cCHHHHHHHHHHhcCCCcEEEEECCC-CHHHHHHhh---------hcCCEEEEEEEec-CCCCCCcEEEEEEE
Confidence            2  224566666655 4677777655543 333444443         5678876655544 45444333344444

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=6.8e-09  Score=81.67  Aligned_cols=101  Identities=11%  Similarity=0.023  Sum_probs=73.0

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc-C
Q 043853           54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF-G  132 (222)
Q Consensus        54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~-~  132 (222)
                      .+.+.+.+...  +++.|||+|||.|.+|..+++.+.+++++|+|+.+++.+++....  .++++++.+|+.++.... .
T Consensus        10 ~~~Iv~~~~~~--~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~~~~~~~   85 (252)
T d1qyra_          10 IDSIVSAINPQ--KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             HHHHHHHHCCC--TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHH
T ss_pred             HHHHHHhcCCC--CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhhcccccc
Confidence            44455555433  478999999999999999999999999999999999999874422  246999999998764321 1


Q ss_pred             CCCCCCcEEEECCCCCCccHHHHHHHH
Q 043853          133 NAFPKPDIVISDPNRPGMHMKLIKFLL  159 (222)
Q Consensus       133 ~~~~~fD~ii~~pp~~~~~~~~~~~l~  159 (222)
                      ...+..-.|+.|.|+.-. .+++..+.
T Consensus        86 ~~~~~~~~vvgNlPY~Is-s~Il~~l~  111 (252)
T d1qyra_          86 EKMGQPLRVFGNLPYNIS-TPLMFHLF  111 (252)
T ss_dssp             HHHTSCEEEEEECCTTTH-HHHHHHHH
T ss_pred             cccCCCeEEEecchHHHH-HHHHHHhc
Confidence            000133478999997644 45555543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=2.2e-08  Score=81.09  Aligned_cols=102  Identities=14%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHc--C---CCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLN--N---ISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~--~---~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      +.++||.+|.|.|+.+..+.+..  .+++.+|++|..++.|++.+...  +   -++++++.+|+.++.....   .+||
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~---~~yD  153 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE---ERYD  153 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC---CCEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcC---Cccc
Confidence            46799999999999999887653  49999999999999999987542  1   2469999999999876532   5799


Q ss_pred             EEEECCCC---C------CccHHHHHHHHh-CCCCcEEEEee
Q 043853          140 IVISDPNR---P------GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~---~------~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      +|++|++.   .      -...++.+.+++ |+++|++.+.+
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            99988641   1      123567776655 89999887644

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.76  E-value=8.6e-08  Score=76.29  Aligned_cols=102  Identities=19%  Similarity=0.196  Sum_probs=77.8

Q ss_pred             CCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHc----------CCCcEEEEeCchhchhhhcCCC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLN----------NISNATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~----------~~~~v~~~~~d~~~~~~~~~~~  134 (222)
                      ++.++||-+|+|.|..+..+.+. ..+++.+|+||.+++.|++....+          .-++++++.+|+.++...    
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc----
Confidence            34689999999999999877664 348999999999999999866432          134699999999988764    


Q ss_pred             CCCCcEEEECCCCC------CccHHHHHHHHh-CCCCcEEEEee
Q 043853          135 FPKPDIVISDPNRP------GMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       135 ~~~fD~ii~~pp~~------~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      .++||+|++|.+..      -...++.+.+++ |+++|++.+.+
T Consensus       147 ~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         147 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            25799999987532      123466666655 88999887655

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.68  E-value=7.6e-08  Score=77.17  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=79.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +.++||-+|.|.|+.+..+.+..  .+|+.+|+||.+++.|++.+..+.    -++++++.+|+.++.....   ++||+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~---~~yDv  165 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK---NEFDV  165 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS---SCEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCC---CCCCE
Confidence            46899999999999998887753  489999999999999999876542    2469999999999987533   58999


Q ss_pred             EEECCCCC-------CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          141 VISDPNRP-------GMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       141 ii~~pp~~-------~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      |++|++..       -...++.+.+++ |+++|++...+.
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~  205 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  205 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence            99987421       224667776655 899998876553

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.60  E-value=1e-07  Score=76.90  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +.++||-+|.|.|+.+..+.+..  .+++.+|+++..++.|++.+..+.    -++++++.+|+.++....   .++||+
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~---~~~yDv  182 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH---KNEFDV  182 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC---TTCEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC---CCCCCE
Confidence            46799999999999999888754  599999999999999999875432    246999999999988652   258999


Q ss_pred             EEECCCC------CCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          141 VISDPNR------PGMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       141 ii~~pp~------~~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      |++|++.      .-...++.+.+++ |+++|++...+.
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            9999752      1233455666654 889998887653

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=2.1e-07  Score=73.86  Aligned_cols=102  Identities=15%  Similarity=0.024  Sum_probs=80.4

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc----CCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN----NISNATFVQGDLNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~fD~  140 (222)
                      +.++||-+|.|.|..+..+.+.  ..+++.+|+||..++.|++....+    .-++++++.+|+..+....   .++||+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~---~~~yDv  151 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS---ENQYDV  151 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC---CSCEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc---CCCCCE
Confidence            4679999999999999988875  359999999999999999987543    2246999999999987652   358999


Q ss_pred             EEECCCC------CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          141 VISDPNR------PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~------~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      |+.|++.      .-...++.+.+++ |+++|++...+
T Consensus       152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            9999752      1234667776654 89999887655

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.7e-07  Score=74.76  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=78.2

Q ss_pred             CCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc----CCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN----NISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      +..++||-+|.|.|+.+..+.+.  ..+++.+|++|..++.|++....+    .-++++++.+|+.++....   .++||
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~---~~~yD  153 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN---QDAFD  153 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC---SSCEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC---CCCCC
Confidence            34689999999999999988875  459999999999999999987543    2346999999999988652   25899


Q ss_pred             EEEECCCC------CCccHHHHHHHHh-CCCCcEEEEee
Q 043853          140 IVISDPNR------PGMHMKLIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~------~~~~~~~~~~l~~-l~~~~~v~~~~  171 (222)
                      +|++|++.      .-...++.+.+++ |+++|++.+.+
T Consensus       154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            99999752      1123345555554 89999887665

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.54  E-value=3.6e-07  Score=73.04  Aligned_cols=105  Identities=16%  Similarity=0.110  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCc
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      ++.++||=+|-|.|+.+..+.+..  .+++.+|+|+..++.+++....+.    -++++++.+|+.++.....  .++||
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~--~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA--EGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC--TTCEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc--ccCcc
Confidence            346799999999999999888754  489999999999999999775432    2469999999999886532  24799


Q ss_pred             EEEECCCCC------CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853          140 IVISDPNRP------GMHMKLIKFLLK-LKAPRIVYVSCN  172 (222)
Q Consensus       140 ~ii~~pp~~------~~~~~~~~~l~~-l~~~~~v~~~~~  172 (222)
                      +|+.|.+..      -...++.+.+++ |+++|++...+.
T Consensus       157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  196 (290)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence            999998532      123566666655 899998887653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.49  E-value=8.7e-08  Score=74.81  Aligned_cols=80  Identities=19%  Similarity=0.172  Sum_probs=60.3

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC------------------------------------------eEEEEeCCHHHHHH
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK------------------------------------------HVYGYEVVPQAISD  104 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~------------------------------------------~v~gvD~~~~~i~~  104 (222)
                      .+..++|..||||++.+.+|....                                          +++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            356799999999999996654210                                          26799999999999


Q ss_pred             H---HHHHHHcCCCc-EEEEeCchhchhhhc-CCCCCCCcEEEECCC
Q 043853          105 A---CRNAKLNNISN-ATFVQGDLNKIGGDF-GNAFPKPDIVISDPN  146 (222)
Q Consensus       105 a---~~n~~~~~~~~-v~~~~~d~~~~~~~~-~~~~~~fD~ii~~pp  146 (222)
                      |   ++|++..|+.. +++.+.|+++..... .......++|++|||
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP  176 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP  176 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC
Confidence            8   56898889876 999999987654211 011246799999999

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=4.7e-06  Score=64.43  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=99.4

Q ss_pred             CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+++|+|+|.|.-++.+|-.  ..+++-+|.+..-+...+.-+...+++++.++++.++++..... ..+.||+|++=
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~-~~~~~D~v~sR  148 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKD-VRESYDIVTAR  148 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTT-TTTCEEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccccc-ccccceEEEEh
Confidence            3678999999999999988754  44999999999999999999999999999999999987653211 12479999984


Q ss_pred             CCCCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853          145 PNRPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL  221 (222)
Q Consensus       145 pp~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~  221 (222)
                      .-  .....+++.... ++++|.+++--... ...++....+..    -..++++.....+. .|.......+.++++
T Consensus       149 Av--a~l~~ll~~~~~~l~~~g~~i~~KG~~-~~~El~~a~~~~----~~~~~~~~~v~~~~-lp~~~~~r~lv~i~K  218 (239)
T d1xdza_         149 AV--ARLSVLSELCLPLVKKNGLFVALKAAS-AEEELNAGKKAI----TTLGGELENIHSFK-LPIEESDRNIMVIRK  218 (239)
T ss_dssp             CC--SCHHHHHHHHGGGEEEEEEEEEEECC--CHHHHHHHHHHH----HHTTEEEEEEEEEE-CTTTCCEEEEEEEEE
T ss_pred             hh--hCHHHHHHHHhhhcccCCEEEEECCCC-hHHHHHHHHHHH----HHcCCEEEEEEEEe-CCCCCCCEEEEEEEE
Confidence            32  223566666655 46777766555442 233332211100    03477877777765 476665555555553

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.29  E-value=1.8e-06  Score=64.25  Aligned_cols=77  Identities=17%  Similarity=0.228  Sum_probs=61.3

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC-CCCCCCcEEEEC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG-NAFPKPDIVISD  144 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~ii~~  144 (222)
                      .++..++|..+|.|+.+..+.+..++|+|+|.+|.+++.|++.    ..+++.+++++..++...+. ...+.+|.|++|
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D   92 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAALGVERVDGILAD   92 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence            3588999999999999998888788999999999999998764    23469999998877654321 122479999998


Q ss_pred             CC
Q 043853          145 PN  146 (222)
Q Consensus       145 pp  146 (222)
                      .-
T Consensus        93 LG   94 (182)
T d1wg8a2          93 LG   94 (182)
T ss_dssp             CS
T ss_pred             cc
Confidence            73

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=98.24  E-value=1.7e-06  Score=69.38  Aligned_cols=92  Identities=24%  Similarity=0.328  Sum_probs=68.7

Q ss_pred             eEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853           70 IVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP  148 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~  148 (222)
                      +|+|++||.|++.+.+.+.+- .+.++|+++.+++..+.|..      -+++.+|+.++....   ....|+++..||+.
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------~~~~~~Di~~~~~~~---~~~~dll~~g~PCq   72 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDE---FPKCDGIIGGPPCQ   72 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------SEEEESCTTTSCGGG---SCCCSEEEECCCCT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCCccCChhhCCHhH---cccccEEeeccccc
Confidence            699999999999998876544 66699999999998888852      356789998875542   24799999999932


Q ss_pred             C----------------ccHHHHHHHHhCCCCcEEEEe
Q 043853          149 G----------------MHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       149 ~----------------~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +                +...+++.+..++|.-+++-.
T Consensus        73 ~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lEN  110 (324)
T d1dcta_          73 SWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAEN  110 (324)
T ss_dssp             TTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred             ccccccccccccccccchHHHHHHHHHhhCCceeeccc
Confidence            2                334566667778887666533

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=98.19  E-value=3.5e-06  Score=67.83  Aligned_cols=92  Identities=21%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .+.+|||++||.|++++.+.+.+- -+.++|+++.+++..+.|...       ..++|+.++.....   ..+|+++..|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~-------~~~~Di~~~~~~~~---~~~Dll~ggp   79 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-------KPEGDITQVNEKTI---PDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC-------CCBSCGGGSCGGGS---CCCSEEEEEC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC-------CCcCchhcCchhhc---ceeeeeeccc
Confidence            468999999999999998877654 667899999999999999742       23588887754422   4799999999


Q ss_pred             C----------------CCCccHHHHHHHHhCCCCcEEE
Q 043853          146 N----------------RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       146 p----------------~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      |                +..+...+++.+..++|.-+++
T Consensus        80 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~l  118 (327)
T d2c7pa1          80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFM  118 (327)
T ss_dssp             CCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEE
T ss_pred             ccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEec
Confidence            8                3346677888888888877665

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=98.12  E-value=2.1e-06  Score=66.54  Aligned_cols=45  Identities=20%  Similarity=0.384  Sum_probs=42.0

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      .+++.|||.+||+|+.+++..+.+.+.+|+|++++.++.|++++.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            458899999999999999999999999999999999999999875

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.3e-06  Score=66.45  Aligned_cols=95  Identities=17%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             CCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ..+|+|++||.|++.+.+.+.+-   -+.++|+++.+++..+.|.     ++..++.+|+.++...... ...+|+++..
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~-~~~~Dll~gg   75 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFD-RLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHH-HHCCSEEEEC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcC-CCCccEEEee
Confidence            45899999999999998866542   3779999999999988875     3456778888766432110 1268999999


Q ss_pred             CCC----------------CCccHHHHHHHHhC--CCCcEEE
Q 043853          145 PNR----------------PGMHMKLIKFLLKL--KAPRIVY  168 (222)
Q Consensus       145 pp~----------------~~~~~~~~~~l~~l--~~~~~v~  168 (222)
                      ||+                ..+...+++.+..+  +|.-+++
T Consensus        76 pPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~  117 (343)
T d1g55a_          76 PPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILL  117 (343)
T ss_dssp             CC------------------CHHHHHHHHGGGCSSCCSEEEE
T ss_pred             cccccccccccccccccccccccchhhhhHhhhcCCCceeee
Confidence            992                33445566666655  4655554

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.03  E-value=1.7e-05  Score=59.20  Aligned_cols=124  Identities=15%  Similarity=0.140  Sum_probs=68.4

Q ss_pred             CCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH----HHhhc----C--CeEEEEeCCHHHHHHHHHH
Q 043853           39 ANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL----TLARW----V--KHVYGYEVVPQAISDACRN  108 (222)
Q Consensus        39 ~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~----~la~~----~--~~v~gvD~~~~~i~~a~~n  108 (222)
                      .+.||... ...+.+.+.+..     ..+.-+|+++|||+|-=..    .+.+.    .  -+++|+|+|+.+++.|++.
T Consensus         2 ~T~FFRd~-~~f~~L~~~~~~-----~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2           2 LTAFFREA-HHFPILAEHARR-----RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             CCCTTTTT-THHHHHHHHHHH-----SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCCCcCCc-HHHHHHHHHHhc-----cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            35677653 333333333322     1235699999999998433    33321    1  1799999999999999743


Q ss_pred             HHHc------------------CC-------------CcEEEEeCchhchhhhcCCCCCCCcEEEECCC----CCCccHH
Q 043853          109 AKLN------------------NI-------------SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMK  153 (222)
Q Consensus       109 ~~~~------------------~~-------------~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~  153 (222)
                      ....                  +.             ..+++...+.......   ..+.||+|+|---    ......+
T Consensus        76 ~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~fDvI~CRNVLiYf~~~~~~~  152 (193)
T d1af7a2          76 IYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYN---VPGPFDAIFCRNVMIYFDKTTQED  152 (193)
T ss_dssp             EEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCC---CCCCEEEEEECSSGGGSCHHHHHH
T ss_pred             cccHHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccccccC---CCCCccEEEeehhHHhcCHHHHHH
Confidence            3100                  00             0133333333332111   2257999998432    1122345


Q ss_pred             HHHHHHh-CCCCcEEEEee
Q 043853          154 LIKFLLK-LKAPRIVYVSC  171 (222)
Q Consensus       154 ~~~~l~~-l~~~~~v~~~~  171 (222)
                      +++.+.. |+|||++++..
T Consensus       153 vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         153 ILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             HHHHHGGGEEEEEEEEECT
T ss_pred             HHHHHHHHhCCCcEEEEec
Confidence            5555544 79999988663

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.95  E-value=5.6e-06  Score=64.86  Aligned_cols=58  Identities=12%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc
Q 043853           52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN  112 (222)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~  112 (222)
                      .+.+.+....   ..+++.|||.+||+|+.+++..+.+.+.+|+|+++..++.|++++...
T Consensus       195 ~L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3444444443   245889999999999999999999999999999999999999999764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.94  E-value=3.3e-06  Score=67.40  Aligned_cols=47  Identities=23%  Similarity=0.413  Sum_probs=42.7

Q ss_pred             CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN  112 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~  112 (222)
                      .++..|||.+||+|+.+.++.+.+.+.+|+|++++.++.|++.+...
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            45889999999999999999999999999999999999999887543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.82  E-value=6.4e-05  Score=58.11  Aligned_cols=91  Identities=19%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ...+|||+|||+|.+++.+++..+  +++..|+ |..++.+.      ..++++++.+|..+..       ...|++++.
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~ri~~~~gd~~~~~-------p~~D~~~l~  146 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP------PLSGIEHVGGDMFASV-------PQGDAMILK  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CCTTEEEEECCTTTCC-------CCEEEEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC------CCCCeEEecCCccccc-------ccceEEEEe
Confidence            468999999999999999998876  7888887 55543221      2346999999986532       245888775


Q ss_pred             CCCCCc-cH---HHHHHHH-hCCCCcEEEEee
Q 043853          145 PNRPGM-HM---KLIKFLL-KLKAPRIVYVSC  171 (222)
Q Consensus       145 pp~~~~-~~---~~~~~l~-~l~~~~~v~~~~  171 (222)
                      ---... .+   .+++.+. .++|++.+++..
T Consensus       147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            421111 12   3333332 378888776544

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.79  E-value=4.1e-05  Score=58.77  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             CCeEEEEecccchhHHHHhhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh--hhcCCCCCCCc
Q 043853           68 SEIVLDLFCGTGTIGLTLARW------VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG--GDFGNAFPKPD  139 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~la~~------~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~fD  139 (222)
                      .++|||+|++.|+-++.++..      ..+++|+|+++.....+..     ..++++++++|..+..  ..+.  ...+|
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----~~~~I~~i~gDs~~~~~~~~l~--~~~~d  153 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSDLTTFEHLR--EMAHP  153 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----GCTTEEEEECCSSCSGGGGGGS--SSCSS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----cccceeeeecccccHHHHHHHH--hcCCC
Confidence            579999999999877766531      3599999998754433221     2356999999976532  2222  23689


Q ss_pred             EEEECCCCCCccHHHHHH-H-HhCCCCcEEEEee
Q 043853          140 IVISDPNRPGMHMKLIKF-L-LKLKAPRIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~-l-~~l~~~~~v~~~~  171 (222)
                      +|++|-.... .....+. + ..+++||++++..
T Consensus       154 lIfID~~H~~-~~v~~~~~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         154 LIFIDNAHAN-TFNIMKWAVDHLLEEGDYFIIED  186 (232)
T ss_dssp             EEEEESSCSS-HHHHHHHHHHHTCCTTCEEEECS
T ss_pred             EEEEcCCcch-HHHHHHHHHhcccCcCCEEEEEc
Confidence            9999865332 2222221 2 3478999888764

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=6.7e-05  Score=60.39  Aligned_cols=74  Identities=18%  Similarity=0.079  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhcCC----CCCCCeEEEEecccchhHHHHhhc-C-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853           52 VLYKLIEDCAGLR----DDGSEIVLDLFCGTGTIGLTLARW-V-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN  125 (222)
Q Consensus        52 ~~~~~i~~~~~~~----~~~~~~vlDlg~G~G~~~~~la~~-~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~  125 (222)
                      .+++.+.+.+++.    ..++..|||+|.|.|.+|..+.+. . .+++++|+|+..++..++...   -++++++++|+.
T Consensus        24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l  100 (322)
T d1i4wa_          24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPY  100 (322)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTT
T ss_pred             HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchh
Confidence            3444455554432    124678999999999999988764 3 489999999999999987653   246899999997


Q ss_pred             chh
Q 043853          126 KIG  128 (222)
Q Consensus       126 ~~~  128 (222)
                      .+.
T Consensus       101 ~~~  103 (322)
T d1i4wa_         101 DWS  103 (322)
T ss_dssp             CHH
T ss_pred             hcc
Confidence            653

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.54  E-value=0.00015  Score=55.96  Aligned_cols=65  Identities=26%  Similarity=0.380  Sum_probs=48.9

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ...+|+|+|||+|..++.+++..+  +++..|. |..++.+.      ..++++++.+|..+..       ..+|++++.
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~~-------p~aD~~~l~  145 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTSI-------PNADAVLLK  145 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTCC-------CCCSEEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccCC-------CCCcEEEEE
Confidence            357899999999999999998765  8889998 55554332      1246999999987632       257998775


Q ss_pred             C
Q 043853          145 P  145 (222)
Q Consensus       145 p  145 (222)
                      -
T Consensus       146 ~  146 (244)
T d1fp2a2         146 Y  146 (244)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.0016  Score=47.61  Aligned_cols=69  Identities=20%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc----CCCCCCCc
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF----GNAFPKPD  139 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~----~~~~~~fD  139 (222)
                      ++.+|||+||+.|+++..+++.   ...++|+|+.|.           ..++++.++++|..+.....    .....++|
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D   90 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ   90 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCccee
Confidence            5789999999999999977753   358999998762           23567999999986543210    01224799


Q ss_pred             EEEECCC
Q 043853          140 IVISDPN  146 (222)
Q Consensus       140 ~ii~~pp  146 (222)
                      +|++|..
T Consensus        91 lVlSD~a   97 (180)
T d1ej0a_          91 VVMSDMA   97 (180)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999973

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.14  E-value=0.00072  Score=51.87  Aligned_cols=54  Identities=22%  Similarity=0.258  Sum_probs=41.2

Q ss_pred             CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI  127 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~  127 (222)
                      +..+|+|+|||+|.+++.+++..+  +++..|+.+ .++.++      ..+++++..+|..+.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~------~~~r~~~~~~d~~~~  136 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP------SYPGVEHVGGDMFVS  136 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC------CCTTEEEEECCTTTC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc------cCCceEEeccccccc
Confidence            357899999999999999998866  889999853 333222      124599999998763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.47  E-value=0.01  Score=40.47  Aligned_cols=91  Identities=14%  Similarity=0.151  Sum_probs=55.0

Q ss_pred             eEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           70 IVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +|+=+|  .|.++..+++    .+..++.+|.||+.++.+++..      ++.++.||..+...-........|.+++-.
T Consensus         2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh------hhhhccCcccchhhhhhcChhhhhhhcccC
Confidence            344444  5777666554    4669999999999998876531      367899998765432222234788888865


Q ss_pred             CCCCccHHHHHHHHhCCCCcEEE
Q 043853          146 NRPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       146 p~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      +............+.+++..++.
T Consensus        74 ~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcHHHHHHHHHHHHHcCCceEEE
Confidence            43222112222334567766554

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.96  E-value=0.018  Score=39.01  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             cccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHH
Q 043853           76 CGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMK  153 (222)
Q Consensus        76 ~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~  153 (222)
                      ||.|..+..+++.  +..++.+|.++..++.++..       ++.++.||..+...-........+.+++..+.......
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~   78 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-------GANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH   78 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------TCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------CccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence            6778888877764  44788999999988766432       47899999866532111233578888888764433334


Q ss_pred             HHHHHHhCCCCcEEEEeeCccchHhhHHH
Q 043853          154 LIKFLLKLKAPRIVYVSCNPATCARDLDY  182 (222)
Q Consensus       154 ~~~~l~~l~~~~~v~~~~~~~~~~~~~~~  182 (222)
                      +...++.+.|...++..++.......+..
T Consensus        79 ~~~~~r~~~~~~~iia~~~~~~~~~~l~~  107 (129)
T d2fy8a1          79 CILGIRKIDESVRIIAEAERYENIEQLRM  107 (129)
T ss_dssp             HHHHHHHHCSSSCEEEECSSGGGHHHHHH
T ss_pred             HHHHHHHHCCCceEEEEEcCHHHHHHHHH
Confidence            44455667787667767665554444443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.85  E-value=0.0096  Score=40.60  Aligned_cols=99  Identities=14%  Similarity=0.113  Sum_probs=57.9

Q ss_pred             cccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc
Q 043853           76 CGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH  151 (222)
Q Consensus        76 ~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~  151 (222)
                      ||.|.++..++    +.+.+++.+|.+++.++.++..       ....+.+|+.+...-........|.+++..+.....
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~   78 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-------ATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA   78 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-------CSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-------CCcceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence            35566665554    3567999999999999887531       246677887654321111123688888876644333


Q ss_pred             HHHHHHHHhCCCCcEEEEeeCccchHhhHH
Q 043853          152 MKLIKFLLKLKAPRIVYVSCNPATCARDLD  181 (222)
Q Consensus       152 ~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~  181 (222)
                      ..+...+....+...++.-.+.......+.
T Consensus        79 ~~~~~~~~~~~~~~~iiar~~~~~~~~~l~  108 (134)
T d2hmva1          79 STLTTLLLKELDIPNIWVKAQNYYHHKVLE  108 (134)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcEEeecccHhHHHHHH
Confidence            344444555555556665655544444333

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.01  E-value=0.032  Score=39.93  Aligned_cols=102  Identities=16%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             HHhcCCCCCCCeEEEEeccc-chhHHHHhhc-C-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC
Q 043853           59 DCAGLRDDGSEIVLDLFCGT-GTIGLTLARW-V-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA  134 (222)
Q Consensus        59 ~~~~~~~~~~~~vlDlg~G~-G~~~~~la~~-~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~  134 (222)
                      +..+..  ++++|+=+|||. |..++.+++. + .+|+++|.++.-++.|++    .|.+. +.....++.+...... .
T Consensus        21 ~~a~~~--~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~~v~~~t-~   93 (174)
T d1jqba2          21 ELADIE--MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGATDILNYKNGHIEDQVMKLT-N   93 (174)
T ss_dssp             HHTTCC--TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHHHHHHHT-T
T ss_pred             HHhCCC--CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCccccccccchhHHHHHHHHh-h
Confidence            344444  377888889884 6666666664 3 489999999998888865    35542 2222223333222222 2


Q ss_pred             CCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       135 ~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ...+|++|-......   .+...+..++++|.+.+-
T Consensus        94 g~G~D~vid~~g~~~---~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          94 GKGVDRVIMAGGGSE---TLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             TSCEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred             ccCcceEEEccCCHH---HHHHHHHHHhcCCEEEEE
Confidence            235999887654332   233445556777776543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.057  Score=41.02  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=56.0

Q ss_pred             CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchh------hhcCCCCCC
Q 043853           68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIG------GDFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~------~~~~~~~~~  137 (222)
                      ++.+|=.|+++|.   ++..+++.+.+|+.++.++..++.+.+.++..+.+ ++.++++|+.+..      .......+.
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~   89 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG   89 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            6788888877665   22355566789999999999999998888877654 4888899986532      111112247


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|++|.+.
T Consensus        90 iD~lVnnA   97 (257)
T d1xg5a_          90 VDICINNA   97 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            99999886

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.75  E-value=0.084  Score=37.51  Aligned_cols=94  Identities=13%  Similarity=0.106  Sum_probs=60.9

Q ss_pred             CCCeEEEEeccc-chhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCGT-GTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G~-G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      +..+|+=+|+|. |..++..|. .+.+|+.+|.++..++..+.....    +++....+-..+...+    ...|+||..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~----~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAV----AEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHH----HTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhh----ccCcEEEEe
Confidence            467999999995 555566665 577999999999999888766532    3566666555544333    268999886


Q ss_pred             C--C-CCCccHHHHHHHHhCCCCcEEE
Q 043853          145 P--N-RPGMHMKLIKFLLKLKAPRIVY  168 (222)
Q Consensus       145 p--p-~~~~~~~~~~~l~~l~~~~~v~  168 (222)
                      -  | ++...--..+.++.++++.+++
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             eecCCcccCeeecHHHHhhcCCCcEEE
Confidence            4  2 1111111234556678877665

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.73  E-value=0.028  Score=45.80  Aligned_cols=49  Identities=14%  Similarity=-0.020  Sum_probs=41.5

Q ss_pred             CCCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCC
Q 043853           66 DGSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNI  114 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~  114 (222)
                      .++..++|+||-.|..+..++..    ..+|+++|-+|...+..++|++.++.
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            35789999999999988866542    35899999999999999999998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.082  Score=36.59  Aligned_cols=106  Identities=7%  Similarity=-0.010  Sum_probs=60.2

Q ss_pred             eEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           70 IVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        70 ~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      .++=+|+  |.++..++    +.+.+++.+|.+++......+....   .++.++.||..+...-.....+..|.+++..
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~---~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc---CCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence            4555555  45554443    4467999999998765444443332   2478999998765321111224688888876


Q ss_pred             CCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhH
Q 043853          146 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       146 p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                      +.......+...++.+.|...++..+........+
T Consensus        80 ~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l  114 (153)
T d1id1a_          80 DNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKI  114 (153)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHH
Confidence            64322233333455566666566666554333333

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.059  Score=38.22  Aligned_cols=96  Identities=19%  Similarity=0.061  Sum_probs=58.1

Q ss_pred             CCCCeEEEEec--ccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853           66 DGSEIVLDLFC--GTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV  141 (222)
Q Consensus        66 ~~~~~vlDlg~--G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i  141 (222)
                      .++++||-.|+  |.|..++.+++. +.++++++.+++..+.+++    .|.+. +.....|..+...... ....+|++
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t-~~~g~d~v  101 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV-GEKGIDII  101 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH-CTTCEEEE
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcccccccccccHHHHhhhhh-ccCCceEE
Confidence            35889999996  466667777764 5699999999887777654    56653 2222233333222211 22469998


Q ss_pred             EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +-...    ...+...+..++++|.+..-
T Consensus       102 ~d~~g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         102 IEMLA----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EESCH----HHHHHHHHHHEEEEEEEEEC
T ss_pred             eeccc----HHHHHHHHhccCCCCEEEEE
Confidence            87542    23344445667887776644

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.27  E-value=0.12  Score=36.66  Aligned_cols=94  Identities=10%  Similarity=-0.011  Sum_probs=55.7

Q ss_pred             CCCCeEEEEecccch-hHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC---chhchhhhcCCCCCCCc
Q 043853           66 DGSEIVLDLFCGTGT-IGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG---DLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~-~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~fD  139 (222)
                      .++++|+=+|||.-+ .++.+++  +...++.+|.++.-++.+++.    |..  +++..   |+.+....+. + +.+|
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~--~~i~~~~~~~~~~i~~~t-~-gg~D   98 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEIT-D-GGVN   98 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHT-T-SCEE
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe--EEEeCCCcCHHHHHHHHc-C-CCCc
Confidence            358889989987433 3345554  244888999999988888763    554  33333   3333222221 1 3699


Q ss_pred             EEEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +++-...   ....+...+..++++|.+.+.
T Consensus        99 ~vid~~G---~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          99 FALESTG---SPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEEECSC---CHHHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEcCC---cHHHHHHHHhcccCceEEEEE
Confidence            9887643   223344455667887776553

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=93.79  E-value=0.042  Score=41.72  Aligned_cols=31  Identities=26%  Similarity=0.317  Sum_probs=25.1

Q ss_pred             CCCeEEEEecccchhHHHHhhcC--CeEEEEeC
Q 043853           67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEV   97 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~   97 (222)
                      +..+|+|+|||.|+++..++...  ..+.|+++
T Consensus        66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             CCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            36789999999999999888654  36777776

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.56  E-value=0.11  Score=36.95  Aligned_cols=103  Identities=9%  Similarity=0.001  Sum_probs=57.5

Q ss_pred             HHHHHhcCCCCCCCeEEEEecccchh-HHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCc--hhchhh
Q 043853           56 LIEDCAGLRDDGSEIVLDLFCGTGTI-GLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGD--LNKIGG  129 (222)
Q Consensus        56 ~i~~~~~~~~~~~~~vlDlg~G~G~~-~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d--~~~~~~  129 (222)
                      .+.+..+.+  ++++|+=+|||..++ ++.+++  +..+|+++|.++.-++.|++    .|.+. +.....|  ..+...
T Consensus        18 a~~~~a~~~--~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~   91 (174)
T d1p0fa2          18 AAVNTAKVT--PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVIC   91 (174)
T ss_dssp             HHHTTTCCC--TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHhhCCC--CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHH
Confidence            333444433  488999999985443 344554  34599999999998888875    45542 2222223  122211


Q ss_pred             hcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCC-CcEEEE
Q 043853          130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA-PRIVYV  169 (222)
Q Consensus       130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~-~~~v~~  169 (222)
                      ..  ....+|+++-..   +....+...+..+.+ +|.+.+
T Consensus        92 ~~--~~~G~d~vid~~---g~~~~~~~~~~~~~~~~G~~v~  127 (174)
T d1p0fa2          92 EK--TNGGVDYAVECA---GRIETMMNALQSTYCGSGVTVV  127 (174)
T ss_dssp             HH--TTSCBSEEEECS---CCHHHHHHHHHTBCTTTCEEEE
T ss_pred             Hh--cCCCCcEEEEcC---CCchHHHHHHHHHHHhcCceEE
Confidence            11  123689888754   333444555555544 455443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.54  E-value=0.1  Score=36.53  Aligned_cols=95  Identities=12%  Similarity=-0.008  Sum_probs=52.4

Q ss_pred             CCCeEEEEecc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           67 GSEIVLDLFCG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        67 ~~~~vlDlg~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      ++++|+=+|+| .|..++.+++ .+.+++++|.++.-++.+++    .|.+  +++..+-.+..+........+|.++.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~g~~~~i~~  100 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGAS--LTVNARQEDPVEAIQRDIGGAHGVLVT  100 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHSSEEEEEEC
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCcc--ccccccchhHHHHHHHhhcCCcccccc
Confidence            47788889887 3444445555 35699999999998888765    4554  233322222211110001134444443


Q ss_pred             CCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          145 PNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       145 pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      .   +....+...+..++++|.+.+-
T Consensus       101 ~---~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2         101 A---VSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             C---SCHHHHHHHHTTEEEEEEEEEC
T ss_pred             c---ccchHHHHHHHHhcCCcEEEEE
Confidence            2   2234455556667777776543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.23  Score=34.74  Aligned_cols=99  Identities=12%  Similarity=0.014  Sum_probs=56.8

Q ss_pred             CCCCeEEEEecccchhH-HHHhhc-C-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe-CchhchhhhcC-CCCCCCcE
Q 043853           66 DGSEIVLDLFCGTGTIG-LTLARW-V-KHVYGYEVVPQAISDACRNAKLNNISNATFVQ-GDLNKIGGDFG-NAFPKPDI  140 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~-~~la~~-~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~-~d~~~~~~~~~-~~~~~fD~  140 (222)
                      .++++|+=+|||..++. ..+++. + .+|+++|.++.-++.|++    .|.+.+.... .|..+...... .....+|+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCcccccccccccccccccccccCCCCceE
Confidence            34789999999754443 344542 4 489999999998888865    3554322222 22222211110 01136899


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      ++-...   ....+...+..++++|.+.+..
T Consensus       101 vid~~G---~~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         101 TIECTG---AEASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             EEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEeccC---CchhHHHHHHHhcCCCEEEEEe
Confidence            887653   2233444566678877765444

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=93.28  E-value=0.09  Score=40.28  Aligned_cols=87  Identities=11%  Similarity=0.039  Sum_probs=65.5

Q ss_pred             EEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC--C
Q 043853           72 LDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP--G  149 (222)
Q Consensus        72 lDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~--~  149 (222)
                      +..++||-.++..+.+..-+.+.+|+.|.-.+..++|+.  +..++++.+.|..+....+..+.++=-+|++|||+.  +
T Consensus        87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~--~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k~  164 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPH--FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKE  164 (271)
T ss_dssp             CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCC--TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTT
T ss_pred             cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhc--cCCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCHH
Confidence            468999999988888777799999999999999988764  234699999999888765544445667999999943  3


Q ss_pred             ccHHHHHHHHh
Q 043853          150 MHMKLIKFLLK  160 (222)
Q Consensus       150 ~~~~~~~~l~~  160 (222)
                      -...+.+.+..
T Consensus       165 ey~~v~~~l~~  175 (271)
T d2oo3a1         165 EYKEIPYAIKN  175 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34555555443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.26  E-value=0.29  Score=31.15  Aligned_cols=78  Identities=12%  Similarity=0.062  Sum_probs=44.4

Q ss_pred             CCeEEEEec-ccch--hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853           68 SEIVLDLFC-GTGT--IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD  144 (222)
Q Consensus        68 ~~~vlDlg~-G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~  144 (222)
                      .+++.=+|. |+|-  ++..+...+..|+|.|.....  .. +.+...|   +.+..+...+..       ...|+|+.+
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~--~~-~~L~~~G---i~v~~g~~~~~i-------~~~d~vV~S   74 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGV--VT-QRLAQAG---AKIYIGHAEEHI-------EGASVVVVS   74 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSH--HH-HHHHHTT---CEEEESCCGGGG-------TTCSEEEEC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCCh--hh-hHHHHCC---CeEEECCccccC-------CCCCEEEEC
Confidence            456666653 3444  444556678899999986321  11 2223344   455555544432       257999999


Q ss_pred             CCCCCccHHHHHHH
Q 043853          145 PNRPGMHMKLIKFL  158 (222)
Q Consensus       145 pp~~~~~~~~~~~l  158 (222)
                      +.-+.-.+++..+.
T Consensus        75 ~AI~~~npel~~A~   88 (96)
T d1p3da1          75 SAIKDDNPELVTSK   88 (96)
T ss_dssp             TTSCTTCHHHHHHH
T ss_pred             CCcCCCCHHHHHHH
Confidence            86444445555544

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.14  E-value=0.26  Score=34.36  Aligned_cols=100  Identities=24%  Similarity=0.249  Sum_probs=54.5

Q ss_pred             eEEEEeccc-ch-hHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853           70 IVLDLFCGT-GT-IGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP  145 (222)
Q Consensus        70 ~vlDlg~G~-G~-~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p  145 (222)
                      +|+=+|||. |. ++..+.+.+  .+|+|+|.+++.++.+++.    +.  +.....+......      ...|+|++..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~--~~~~~~~~~~~~~------~~~dlIila~   70 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--IDEGTTSIAKVED------FSPDFVMLSS   70 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--CSEEESCGGGGGG------TCCSEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc--chhhhhhhhhhhc------cccccccccC
Confidence            466678873 32 344554444  3899999999999988764    22  2222223222211      2579988876


Q ss_pred             CCCCccHHHHHHHHh-CCCCcEEEEeeCc-cchHhhHHH
Q 043853          146 NRPGMHMKLIKFLLK-LKAPRIVYVSCNP-ATCARDLDY  182 (222)
Q Consensus       146 p~~~~~~~~~~~l~~-l~~~~~v~~~~~~-~~~~~~~~~  182 (222)
                      |... ...+++.+.. ++++.++.-.+.. ......+..
T Consensus        71 p~~~-~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~  108 (171)
T d2g5ca2          71 PVRT-FREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN  108 (171)
T ss_dssp             CHHH-HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH
T ss_pred             Cchh-hhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence            6332 3455555554 5565555433332 333344443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.95  E-value=0.19  Score=37.79  Aligned_cols=77  Identities=19%  Similarity=0.223  Sum_probs=53.9

Q ss_pred             CCCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~  136 (222)
                      +++.+|=.|++. +++.+    +++.+.+|+.+|.+++.++.+.+.++..+. ++..+.+|+.+..      .......+
T Consensus         9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            466777677554 45544    445567999999999999999888877664 4888899986542      11112235


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.+.
T Consensus        87 ~iDilvnna   95 (251)
T d2c07a1          87 NVDILVNNA   95 (251)
T ss_dssp             CCCEEEECC
T ss_pred             Cceeeeecc
Confidence            799999886

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.94  E-value=0.25  Score=37.21  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++.+|=-|++ ++++.    .+++.+.+|+.+|.+++.++.+.+.++..+. ++.++.+|+.+...      ......++
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4555666654 44444    4555678999999999999999888887765 48889999865431      11122357


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.|.
T Consensus        80 iDilVnnA   87 (257)
T d2rhca1          80 VDVLVNNA   87 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            99999874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.82  E-value=0.064  Score=40.09  Aligned_cols=65  Identities=22%  Similarity=0.203  Sum_probs=43.7

Q ss_pred             EEEeCchhchhhhcCCCCCCCcEEEECCCCCC---------ccH-------HHHHH-HHhCCCCcEEEEeeCccchHhhH
Q 043853          118 TFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG---------MHM-------KLIKF-LLKLKAPRIVYVSCNPATCARDL  180 (222)
Q Consensus       118 ~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~---------~~~-------~~~~~-l~~l~~~~~v~~~~~~~~~~~~~  180 (222)
                      +++++|..+.+..+.  ++.+|+|++|||+..         -..       ++++. .+.++++|.+++.+.+.....-.
T Consensus         6 ~i~~gDcle~l~~lp--d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~   83 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE--NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFIC   83 (256)
T ss_dssp             SEEECCHHHHHHHSC--TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHH
T ss_pred             EEEeccHHHHHhhCc--CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhh
Confidence            588999999887764  357999999999521         011       22222 33478999998888776665555


Q ss_pred             HHhh
Q 043853          181 DYLC  184 (222)
Q Consensus       181 ~~l~  184 (222)
                      ..+.
T Consensus        84 ~~~~   87 (256)
T d1g60a_          84 QYLV   87 (256)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            5553

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.78  E-value=0.15  Score=36.98  Aligned_cols=102  Identities=14%  Similarity=0.065  Sum_probs=60.0

Q ss_pred             HhcCCCCCCCeEEEEeccc-chhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe---CchhchhhhcCC
Q 043853           60 CAGLRDDGSEIVLDLFCGT-GTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ---GDLNKIGGDFGN  133 (222)
Q Consensus        60 ~~~~~~~~~~~vlDlg~G~-G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~---~d~~~~~~~~~~  133 (222)
                      ..+..  ++++||-+|||. |..+..+++  .+.+|+++|.++..++.|++.    |.+  .++.   .|+.+....+. 
T Consensus        20 ~a~v~--~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~--~~~~~~~~~~~~~i~~~t-   90 (195)
T d1kola2          20 TAGVG--PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE--IADLSLDTPLHEQIAALL-   90 (195)
T ss_dssp             HTTCC--TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE--EEETTSSSCHHHHHHHHH-
T ss_pred             HhCCC--CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc--EEEeCCCcCHHHHHHHHh-
Confidence            44444  488999999986 445555554  345999999999999888764    443  2222   23322222211 


Q ss_pred             CCCCCcEEEECCC------------CCCccHHHHHHHHhCCCCcEEEEe
Q 043853          134 AFPKPDIVISDPN------------RPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       134 ~~~~fD~ii~~pp------------~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ....+|+++-.--            ..+....+...+..++++|.+.+.
T Consensus        91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            1235888875421            111234555566667888877644

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.65  E-value=0.17  Score=35.27  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=49.5

Q ss_pred             eEEEEecc--cchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853           70 IVLDLFCG--TGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR  147 (222)
Q Consensus        70 ~vlDlg~G--~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~  147 (222)
                      +|.=+|+|  -+.++..+.+.+.+|++.|.+++.++.++++    +.  +.....+....        ...|+|++.-|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~----~~--~~~~~~~~~~~--------~~~DiIilavp~   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QL--VDEAGQDLSLL--------QTAKIIFLCTPI   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TS--CSEEESCGGGG--------TTCSEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh----hc--cceeeeecccc--------cccccccccCcH
Confidence            44556665  2223345556677999999999888877652    32  11122222211        268999887663


Q ss_pred             CCccHHHHHHHHhCCCCcEEEEeeC
Q 043853          148 PGMHMKLIKFLLKLKAPRIVYVSCN  172 (222)
Q Consensus       148 ~~~~~~~~~~l~~l~~~~~v~~~~~  172 (222)
                      . ....+++.+....+++.+++++.
T Consensus        68 ~-~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          68 Q-LILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             H-HHHHHHHHHGGGSCTTCEEEECC
T ss_pred             h-hhhhhhhhhhhhcccccceeecc
Confidence            3 34566666655433444444553

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.50  E-value=0.059  Score=38.03  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=54.8

Q ss_pred             CCCCeEEEEecc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      .++++|+-+|+| .|.+++.+++ .+.+++++|.+++.++.|++    .|.+. .+...+-.+.....   .+.+|+++-
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~----lGa~~-~i~~~~~~~~~~~~---~~~~d~vi~   97 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGADH-YIATLEEGDWGEKY---FDTFDLIVV   97 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCSE-EEEGGGTSCHHHHS---CSCEEEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc----cCCcE-EeeccchHHHHHhh---hcccceEEE
Confidence            358899999988 5556666665 46799999999998888765    46542 12222222222222   246898876


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      .-.... ...+...+..++++|.+.+-
T Consensus        98 ~~~~~~-~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          98 CASSLT-DIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             CCSCST-TCCTTTGGGGEEEEEEEEEC
T ss_pred             EecCCc-cchHHHHHHHhhccceEEEe
Confidence            432111 00112234446677666543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.46  E-value=0.12  Score=36.72  Aligned_cols=97  Identities=13%  Similarity=0.046  Sum_probs=57.1

Q ss_pred             CCCeEEEEecc-cchhHHHHhhc-C-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhc--CCCCCCCcE
Q 043853           67 GSEIVLDLFCG-TGTIGLTLARW-V-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDF--GNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G-~G~~~~~la~~-~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~--~~~~~~fD~  140 (222)
                      ++++||-+||| .|...+.+++. + .+|+++|.++..++.+++    .|.+. +.....|..+.....  ......+|+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dv  103 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDITHGRGADF  103 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhhCCCCceE
Confidence            47899999987 45566666654 4 389999999999988865    35542 222223333321111  011235899


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      ||-.....   ..+...+..++++|.+.+-
T Consensus       104 vid~vG~~---~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         104 ILEATGDS---RALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EEECSSCT---THHHHHHHHEEEEEEEEEC
T ss_pred             EeecCCch---hHHHHHHHHhcCCCEEEEE
Confidence            88654322   2344455666777776533

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.45  E-value=0.19  Score=35.08  Aligned_cols=98  Identities=13%  Similarity=0.052  Sum_probs=57.4

Q ss_pred             CCCCeEEEEecc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCc----hhchhhhcC-CCCCCC
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD----LNKIGGDFG-NAFPKP  138 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d----~~~~~~~~~-~~~~~f  138 (222)
                      .++++|+=+||| .|.+++.+++ .+.+++++|.++.-++.|++.    +.+ ..+...+    ..+....+. .....+
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga~-~~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD-VTLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS-EEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CCc-EEEeccccccccchhhhhhhcccccCC
Confidence            347889989888 5555555655 356999999999998888773    443 2222211    111111110 012468


Q ss_pred             cEEEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          139 DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       139 D~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      |+++-...   ....+...+..++++|.+.+..
T Consensus       100 D~vid~~g---~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         100 NVTIDCSG---NEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SEEEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             ceeeecCC---ChHHHHHHHHHHhcCCceEEEe
Confidence            99887543   2233445566678877766444

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.17  E-value=0.16  Score=36.12  Aligned_cols=97  Identities=8%  Similarity=-0.017  Sum_probs=56.4

Q ss_pred             CCCCeEEEEeccc-chhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCc--hhchhhhcCCCCCCCc
Q 043853           66 DGSEIVLDLFCGT-GTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGD--LNKIGGDFGNAFPKPD  139 (222)
Q Consensus        66 ~~~~~vlDlg~G~-G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d--~~~~~~~~~~~~~~fD  139 (222)
                      .++++|+=+|||. |..++.+++.  ...|+.+|.++.-++.|++    .|.+.+ .....|  ........  ....+|
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~--~~~G~d  100 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITEL--TAGGVD  100 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH--HTSCBS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhh--hcCCCc
Confidence            3588999999985 6666666664  3489999999987777765    455421 111222  11111111  113689


Q ss_pred             EEEECCCCCCccHHHHHHHHhCCCC-cEEEEee
Q 043853          140 IVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSC  171 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~~l~~~-~~v~~~~  171 (222)
                      ++|-.-   +....+...+..++++ |.+.+-.
T Consensus       101 ~vie~~---G~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         101 YSLDCA---GTAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             EEEESS---CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             EEEEec---ccchHHHHHHHHhhcCCeEEEecC
Confidence            998754   3334455556666764 5555443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.50  E-value=0.32  Score=36.68  Aligned_cols=78  Identities=13%  Similarity=0.071  Sum_probs=53.6

Q ss_pred             CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|+++|.   ++..+++.+.+|+.+|.+++.++.+.+.+...+.. ++..+.+|+.+...      ......+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   83 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGR   83 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            6777777776654   34466667889999999999998887777655433 48888898755421      11112247


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.|-
T Consensus        84 iDiLVnnA   91 (258)
T d1iy8a_          84 IDGFFNNA   91 (258)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            99998863

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.3  Score=34.32  Aligned_cols=94  Identities=15%  Similarity=0.050  Sum_probs=56.4

Q ss_pred             CCCeEEEEecc--cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCG--TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G--~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++++||=.|+|  .|...+.+|+ .+.++++++.+++-.+.+++    .|.+. +.....|+.+-...+. ....+|+++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~t-~g~g~d~v~  102 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEIT-GGKKVRVVY  102 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-TTCCEEEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHHh-CCCCeEEEE
Confidence            47888887655  4556667766 46799999999998888765    46553 2222334433322222 234688877


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      -...    .+.+...+..++++|.+++
T Consensus       103 d~~g----~~~~~~~~~~l~~~G~~v~  125 (179)
T d1qora2         103 DSVG----RDTWERSLDCLQRRGLMVS  125 (179)
T ss_dssp             ECSC----GGGHHHHHHTEEEEEEEEE
T ss_pred             eCcc----HHHHHHHHHHHhcCCeeee
Confidence            6542    1234455555677776554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.21  E-value=0.47  Score=35.50  Aligned_cols=73  Identities=14%  Similarity=0.046  Sum_probs=50.4

Q ss_pred             EEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCCCcE
Q 043853           71 VLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPKPDI  140 (222)
Q Consensus        71 vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~fD~  140 (222)
                      +|=.|++ ++++.    .+++.+.+|+.+|.+++.++.+.+.++..+. ++..+.+|+.+...      ......+..|+
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            3444544 45444    4455678999999999999999888887765 58888999865431      11122357999


Q ss_pred             EEECC
Q 043853          141 VISDP  145 (222)
Q Consensus       141 ii~~p  145 (222)
                      ++.|.
T Consensus        82 lVnnA   86 (255)
T d1gega_          82 IVNNA   86 (255)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.57  Score=34.92  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=56.8

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~  137 (222)
                      .++.+|=-|++.|.   ++..+++.+.+|+.+|.+++.++...+.++..+. ++..+.+|+.+...-      .....+.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            36777777777665   3446667788999999999999999888887664 588899998665321      1112357


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        85 idilinna   92 (244)
T d1yb1a_          85 VSILVNNA   92 (244)
T ss_dssp             CSEEEECC
T ss_pred             CceeEeec
Confidence            99999886

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.80  E-value=0.49  Score=35.56  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=54.4

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~  137 (222)
                      +++++|=.|+++|.   ++..+++.+.+|+.+|.+++.++.+.+.++..+. ++..+.+|+.+..      .......+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            36778877765543   2335556678999999999999999888887665 4888899875542      111112247


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        83 iDilVnna   90 (260)
T d1zema1          83 IDFLFNNA   90 (260)
T ss_dssp             CCEEEECC
T ss_pred             CCeehhhh
Confidence            99999874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.77  E-value=0.36  Score=30.24  Aligned_cols=63  Identities=16%  Similarity=0.117  Sum_probs=35.4

Q ss_pred             HHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH
Q 043853           83 LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL  158 (222)
Q Consensus        83 ~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l  158 (222)
                      ..+.+.+..|+|.|..+...   .+.++..|++   +..+.-.+..       ...|+|+.+|.-+.-.+++..+.
T Consensus        19 ~~L~~~G~~VsGSD~~~~~~---t~~L~~~Gi~---i~~gh~~~~i-------~~~d~vV~SsAI~~~npel~~A~   81 (89)
T d1j6ua1          19 LHEFSNGNDVYGSNIEETER---TAYLRKLGIP---IFVPHSADNW-------YDPDLVIKTPAVRDDNPEIVRAR   81 (89)
T ss_dssp             HHHHHTTCEEEEECSSCCHH---HHHHHHTTCC---EESSCCTTSC-------CCCSEEEECTTCCTTCHHHHHHH
T ss_pred             HHHHhCCCeEEEEeCCCChh---HHHHHHCCCe---EEeeeccccc-------CCCCEEEEecCcCCCCHHHHHHH
Confidence            34445678999999985322   2235666653   4443221111       25799999986443345544443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.52  E-value=0.34  Score=36.31  Aligned_cols=78  Identities=17%  Similarity=0.098  Sum_probs=51.5

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHH-HHcCCCcEEEEeCchhchh------hhcCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNA-KLNNISNATFVQGDLNKIG------GDFGNAFP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~-~~~~~~~v~~~~~d~~~~~------~~~~~~~~  136 (222)
                      +++++|=.|++.|.   .+..+++.+.+|+.+|.+++.++.+.+.+ +..+. ++..+.+|+.+..      .......+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            36778878866554   23355666889999999988887766555 34444 4888889985542      11111224


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|++|.+.
T Consensus        83 ~iDiLVnnA   91 (251)
T d1vl8a_          83 KLDTVVNAA   91 (251)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            799999875

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.82  Score=33.91  Aligned_cols=74  Identities=15%  Similarity=0.072  Sum_probs=49.9

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh--hhcCCCCCCCcEE
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG--GDFGNAFPKPDIV  141 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~fD~i  141 (222)
                      .++++|=.|+++|.   ++..+++.+.+|+.+|.++..++.+.+..     .++..++.|+.+..  .......++.|++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence            47888888876653   33355566789999999988777665432     34677888875542  1222344689999


Q ss_pred             EECC
Q 043853          142 ISDP  145 (222)
Q Consensus       142 i~~p  145 (222)
                      +.+.
T Consensus        81 VnnA   84 (244)
T d1pr9a_          81 VNNA   84 (244)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.42  E-value=0.17  Score=35.88  Aligned_cols=95  Identities=6%  Similarity=-0.120  Sum_probs=52.8

Q ss_pred             CCCCeEEEEecccch-hHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCch-hchhhhcCCCCCCCcE
Q 043853           66 DGSEIVLDLFCGTGT-IGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDL-NKIGGDFGNAFPKPDI  140 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~-~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~-~~~~~~~~~~~~~fD~  140 (222)
                      .++++|+=.|||..+ .++.+++.  +.+|+++|.+++-++.|++.    |.+. +.....|. .+...... ....+|+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~-~g~G~d~  102 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEM-TGNNVGY  102 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH-HTSCCCE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHh-ccccceE
Confidence            358899999998444 44455543  35999999999999988875    4432 22122221 11111100 1236898


Q ss_pred             EEECCCCCCccHHHHHHHHhCC-CCcEEE
Q 043853          141 VISDPNRPGMHMKLIKFLLKLK-APRIVY  168 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~-~~~~v~  168 (222)
                      ++-..   +....+...+..+. ++|.+.
T Consensus       103 vi~~~---g~~~~~~~a~~~~~~~~G~~v  128 (176)
T d1d1ta2         103 TFEVI---GHLETMIDALASCHMNYGTSV  128 (176)
T ss_dssp             EEECS---CCHHHHHHHHTTSCTTTCEEE
T ss_pred             EEEeC---CchHHHHHHHHHhhcCCeEEE
Confidence            87764   22344455555554 434444

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.41  E-value=0.49  Score=35.76  Aligned_cols=79  Identities=14%  Similarity=0.133  Sum_probs=55.1

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhh------hcCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGG------DFGNAF  135 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~------~~~~~~  135 (222)
                      +++++|=.|+++|.   ++..+++.+.+|+.+|.+++.++.+.+.++..+..  ++..+.+|+.+...      ......
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36777777766553   23355566789999999999999999988877654  48999999765321      111122


Q ss_pred             CCCcEEEECC
Q 043853          136 PKPDIVISDP  145 (222)
Q Consensus       136 ~~fD~ii~~p  145 (222)
                      +..|+++.|.
T Consensus        84 g~iDilvnnA   93 (272)
T d1xkqa_          84 GKIDVLVNNA   93 (272)
T ss_dssp             SCCCEEEECC
T ss_pred             CCceEEEeCC
Confidence            4789999874

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=90.23  E-value=1.1  Score=29.09  Aligned_cols=81  Identities=17%  Similarity=0.084  Sum_probs=53.3

Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC-ccHHHHHHHHhCCC-CcE
Q 043853           89 VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG-MHMKLIKFLLKLKA-PRI  166 (222)
Q Consensus        89 ~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~-~~~~~~~~l~~l~~-~~~  166 (222)
                      |.+|.-+|=++...+..+..++..|.. +.....|..+....+..  ..||+|++|...++ -.-++.+.++...+ -.+
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~-v~~~a~~~~~al~~~~~--~~~dliilD~~mp~~~G~e~~~~ir~~~~~~pv   77 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYE-VAGEATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKI   77 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHH--HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEECCHHHHHHHHHh--ccCCEEEEecCCCCCCHHHHHHHHHHhCCCCcE
Confidence            457889999999999999999887763 43344566555433321  37999999974332 23477777766444 345


Q ss_pred             EEEeeC
Q 043853          167 VYVSCN  172 (222)
Q Consensus       167 v~~~~~  172 (222)
                      ++++..
T Consensus        78 i~ls~~   83 (118)
T d1u0sy_          78 IVCSAM   83 (118)
T ss_dssp             EEEECT
T ss_pred             EEEEcc
Confidence            555544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.23  E-value=0.51  Score=35.73  Aligned_cols=78  Identities=13%  Similarity=0.099  Sum_probs=55.4

Q ss_pred             CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchh------hhcCCCCC
Q 043853           68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIG------GDFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~------~~~~~~~~  136 (222)
                      ++++|=.|+++|.   .+..+++.+.+|+.+|.+++.++.+.+.+...+.+  ++..+.+|+.+..      .......+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   83 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFG   83 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            6777777766554   23355566789999999999999999988887654  4899999976542      11111224


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.+.
T Consensus        84 ~iDilVnnA   92 (274)
T d1xhla_          84 KIDILVNNA   92 (274)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEeec
Confidence            789999874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.11  E-value=0.98  Score=32.02  Aligned_cols=76  Identities=9%  Similarity=-0.078  Sum_probs=48.9

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc-CCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLN-NISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      .++++|=.|++.|.   ++..+++.+.+|+.++.+++.++.+.+.+..+ .+........|..+.....    +..|++|
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~iDili   97 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV----KGAHFVF   97 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT----TTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh----cCcCeee
Confidence            47888888865554   23355667889999999999998888877654 2222333334444433222    3689999


Q ss_pred             ECCC
Q 043853          143 SDPN  146 (222)
Q Consensus       143 ~~pp  146 (222)
                      .+..
T Consensus        98 n~Ag  101 (191)
T d1luaa1          98 TAGA  101 (191)
T ss_dssp             ECCC
T ss_pred             ecCc
Confidence            8753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.04  E-value=0.7  Score=32.16  Aligned_cols=94  Identities=10%  Similarity=-0.056  Sum_probs=56.0

Q ss_pred             CCCeEEEEecccchhH-HHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCc---hhchhhhcCCCCCCCcE
Q 043853           67 GSEIVLDLFCGTGTIG-LTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD---LNKIGGDFGNAFPKPDI  140 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~-~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d---~~~~~~~~~~~~~~fD~  140 (222)
                      ++++||=.|+|..+.. +.+++  ++..++++|.+++-++.+++    .+.+  +++..+   ..+... .. ....+|+
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~--~~i~~~~~~~~~~~~-~~-~~~g~d~  103 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD--HVVDARRDPVKQVME-LT-RGRGVNV  103 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCHHHHHHH-HT-TTCCEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc--eeecCcccHHHHHHH-hh-CCCCceE
Confidence            4788999998854443 45554  34589999999988887775    3443  333322   222221 11 2236898


Q ss_pred             EEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853          141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSC  171 (222)
Q Consensus       141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~  171 (222)
                      ++-...   ....+...+..++++|.+.+..
T Consensus       104 vid~~g---~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         104 AMDFVG---SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEESSC---CHHHHHHGGGGEEEEEEEEECC
T ss_pred             EEEecC---cchHHHHHHHHHhCCCEEEEEe
Confidence            887643   2233455566678877766544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.98  E-value=0.77  Score=34.40  Aligned_cols=78  Identities=15%  Similarity=0.060  Sum_probs=54.6

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCC-CC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNA-FP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~-~~  136 (222)
                      +++++|=.|+..|.   ++..+++.+.+|+.++.++..++.+.+.++..+. ++.++..|+.+...      ..... ..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            46788888876553   3335556678999999999999999888887775 48888898855431      11111 13


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.+.
T Consensus        84 ~idilinna   92 (258)
T d1ae1a_          84 KLNILVNNA   92 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CcEEEeccc
Confidence            688888765

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.55  E-value=0.63  Score=34.94  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchh------hhcCCCCC
Q 043853           68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIG------GDFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~------~~~~~~~~  136 (222)
                      ++.+|=.|++.|.   ++..+++.+.+|+.+|.+++.++.+.+.+...+.+  ++.++.+|+.+..      .......+
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5666666665444   22355566789999999999999999888877654  4899999985442      11111224


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.|.
T Consensus        85 ~iDilvnnA   93 (264)
T d1spxa_          85 KLDILVNNA   93 (264)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEeeccc
Confidence            789998873

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.46  E-value=0.82  Score=34.22  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=54.0

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCC-C
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAF-P  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~-~  136 (222)
                      +++++|=.|++.|.   ++..+++.+.+|+.+|.+++.++.+.+.+...+. ++.++.+|+.+..      ....... .
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            47788877766543   2335556678999999999999988888877664 5788888885532      1111111 3


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      +.|+++.+.
T Consensus        86 ~idilvnnA   94 (259)
T d2ae2a_          86 KLNILVNNA   94 (259)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            689999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=89.41  E-value=0.19  Score=38.58  Aligned_cols=55  Identities=18%  Similarity=0.169  Sum_probs=38.4

Q ss_pred             EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------cHH-------HHHHH-HhCCCCcEEEEeeCc
Q 043853          117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------HMK-------LIKFL-LKLKAPRIVYVSCNP  173 (222)
Q Consensus       117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------~~~-------~~~~l-~~l~~~~~v~~~~~~  173 (222)
                      =.+++||..+.+..+.  .+.+|+|++|||+...         ..+       .+..+ +.++++|.+++.+..
T Consensus        13 ~~l~~GD~le~l~~l~--~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~   84 (320)
T d1booa_          13 GSMYIGDSLELLESFP--EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   84 (320)
T ss_dssp             EEEEESCHHHHGGGSC--SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CEEEehhHHHHHhhCc--cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence            5899999999888765  3689999999995321         112       22222 337899999988754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.71  E-value=1.3  Score=32.62  Aligned_cols=73  Identities=12%  Similarity=0.033  Sum_probs=48.1

Q ss_pred             CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh--hhcCCCCCCCcEEE
Q 043853           68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG--GDFGNAFPKPDIVI  142 (222)
Q Consensus        68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~fD~ii  142 (222)
                      ++++|=.|++.|.   ++..+++.+.+|+.+|.++..++.+.+..     .++..+..|+.+..  .......++.|+++
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVDLLV   79 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence            6788877766553   23355566789999999987766655432     35677888886543  12223345899999


Q ss_pred             ECC
Q 043853          143 SDP  145 (222)
Q Consensus       143 ~~p  145 (222)
                      .|.
T Consensus        80 nnA   82 (242)
T d1cyda_          80 NNA   82 (242)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            874

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.66  E-value=0.76  Score=34.36  Aligned_cols=76  Identities=16%  Similarity=0.066  Sum_probs=52.9

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|++ ++++.    .+++.+.+|+.+|.+++.++.+.+.++..+. ++.++.+|+.+...      ......+.
T Consensus        11 gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6677765554 45554    4445677999999999999999888887664 48888999865421      11112247


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        89 iDilvnnA   96 (255)
T d1fmca_          89 VDILVNNA   96 (255)
T ss_dssp             CCEEEECC
T ss_pred             CCEeeeCC
Confidence            99999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.65  E-value=0.97  Score=30.97  Aligned_cols=94  Identities=9%  Similarity=-0.093  Sum_probs=54.0

Q ss_pred             CCCeEEEEecccchhH-HHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEEEE
Q 043853           67 GSEIVLDLFCGTGTIG-LTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIVIS  143 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~-~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~ii~  143 (222)
                      ++++||=.|||.-++. +.+++ .+.+++++|.+++-++.+++    .|.+.+ .....|..+......   ..+|.++.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~---~~~~~~v~   99 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKV---GGVHAAVV   99 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHH---SSEEEEEE
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhccccc---CCCceEEe
Confidence            4788888888754433 34554 35699999999998887765    465421 111122222221111   23455555


Q ss_pred             CCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          144 DPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      +..   ....+...+..+++++.+++.
T Consensus       100 ~~~---~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2         100 TAV---SKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             SSC---CHHHHHHHHHHEEEEEEEEEC
T ss_pred             ecC---CHHHHHHHHHHhccCCceEec
Confidence            543   234455566667888877654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.47  E-value=0.42  Score=33.20  Aligned_cols=95  Identities=18%  Similarity=0.171  Sum_probs=55.4

Q ss_pred             CCCCeEEEEecc--cchhHHHHhh-c-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch---hhhcCCCCCCC
Q 043853           66 DGSEIVLDLFCG--TGTIGLTLAR-W-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI---GGDFGNAFPKP  138 (222)
Q Consensus        66 ~~~~~vlDlg~G--~G~~~~~la~-~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~---~~~~~~~~~~f  138 (222)
                      .++++|+=+||+  .|..++.+++ . ..+|+++|.++.-++.+++.    |.+  .++..+-.++   ..... ....|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~~~~~~-~~~~~   98 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD--YVINASMQDPLAEIRRIT-ESKGV   98 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHT-TTSCE
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc--eeeccCCcCHHHHHHHHh-hcccc
Confidence            347899999973  4445554443 3 45999999999988888763    554  2333332222   22111 22369


Q ss_pred             cEEEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853          139 DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVS  170 (222)
Q Consensus       139 D~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~  170 (222)
                      |+++-...   -...+...+..++++|.+.+.
T Consensus        99 d~vid~~g---~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          99 DAVIDLNN---SEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             EEEEESCC---CHHHHTTGGGGEEEEEEEEEC
T ss_pred             hhhhcccc---cchHHHhhhhhcccCCEEEEe
Confidence            98887643   222233345557788776544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=88.03  E-value=1.7  Score=29.95  Aligned_cols=97  Identities=11%  Similarity=0.131  Sum_probs=57.6

Q ss_pred             CeEEEEecccchhHH--HHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-CCc--E----EEEeCchhchhhhcCCCCCCCc
Q 043853           69 EIVLDLFCGTGTIGL--TLARWVKHVYGYEVVPQAISDACRNAKLNN-ISN--A----TFVQGDLNKIGGDFGNAFPKPD  139 (222)
Q Consensus        69 ~~vlDlg~G~G~~~~--~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-~~~--v----~~~~~d~~~~~~~~~~~~~~fD  139 (222)
                      ++|-=+|+|.-+.++  .|++.+.+|+.+|.++.-++..++.-.... .+.  .    .....|..+..       ...|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-------~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-------KDAD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-------TTCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-------cCCC
Confidence            466778888666555  556677899999999988877765421110 000  1    11122332222       2689


Q ss_pred             EEEECCCCCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853          140 IVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCNP  173 (222)
Q Consensus       140 ~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~~~  173 (222)
                      +|++.-|... ...+++.+.. +.++.++++..+.
T Consensus        75 ~iii~v~~~~-~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          75 VILIVVPAIH-HASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             EEEECSCGGG-HHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEEEEEchhH-HHHHHHHhhhccCCCCEEEEeCCC
Confidence            9988766433 4677777765 5677766655444

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.90  E-value=0.88  Score=31.73  Aligned_cols=94  Identities=13%  Similarity=0.001  Sum_probs=55.3

Q ss_pred             CCCeEEEEec--ccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFC--GTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~--G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      ++++||=.|+  |.|.+++.+|+ .+.+++++..+++-.+.+++    .|.+.+ .....|+.+...... ....+|+++
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~t-~~~g~d~v~   99 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELT-DGYGVDVVL   99 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHT-TTCCEEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccccccccCCccCHHHHHHHHh-CCCCEEEEE
Confidence            4788887763  35556666665 36799999888877666653    566532 222223333322222 224699999


Q ss_pred             ECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853          143 SDPNRPGMHMKLIKFLLKLKAPRIVYV  169 (222)
Q Consensus       143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~  169 (222)
                      -...    .+.+...+..++++|.+..
T Consensus       100 d~~g----~~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_         100 NSLA----GEAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             ECCC----THHHHHHHHTEEEEEEEEE
T ss_pred             eccc----chHHHHHHHHhcCCCEEEE
Confidence            7653    2445555666777776654

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=87.88  E-value=0.66  Score=36.73  Aligned_cols=44  Identities=16%  Similarity=0.016  Sum_probs=32.9

Q ss_pred             CCCeEEEEecccchhHHHHhhc---------CCeEEEEeCCHHHHHHHHHHHH
Q 043853           67 GSEIVLDLFCGTGTIGLTLARW---------VKHVYGYEVVPQAISDACRNAK  110 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~~la~~---------~~~v~gvD~~~~~i~~a~~n~~  110 (222)
                      +.-.|+|+|+|+|.++.-+.+.         ..+++-+|.|+.+.+.-+++++
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            3458999999999998755432         1268899999988777776654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.68  E-value=3.4  Score=29.20  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             CeEEEEecccchhH--HHHhhcCCeEEEEeCCHHHHHHHHHHHHHc-------CCC---------------cEEEEeCch
Q 043853           69 EIVLDLFCGTGTIG--LTLARWVKHVYGYEVVPQAISDACRNAKLN-------NIS---------------NATFVQGDL  124 (222)
Q Consensus        69 ~~vlDlg~G~G~~~--~~la~~~~~v~gvD~~~~~i~~a~~n~~~~-------~~~---------------~v~~~~~d~  124 (222)
                      ++|-=+|+|+=+-+  ..++..+.+|+.+|.+++.++.+++.++..       +..               ++.+ ..|.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-cchh
Confidence            47778888753333  345566789999999999999888876532       110               1111 1222


Q ss_pred             hchhhhcCCCCCCCcEEEECCCC-CCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853          125 NKIGGDFGNAFPKPDIVISDPNR-PGMHMKLIKFLLKLKAPRIVYVSCNP  173 (222)
Q Consensus       125 ~~~~~~~~~~~~~fD~ii~~pp~-~~~~~~~~~~l~~l~~~~~v~~~~~~  173 (222)
                      .+..       ...|+|+=.-|- ..+..++...+....+...++.+...
T Consensus        84 ~~a~-------~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS  126 (192)
T d1f0ya2          84 ASVV-------HSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTS  126 (192)
T ss_dssp             HHHT-------TSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCS
T ss_pred             Hhhh-------cccceehhhcccchhHHHHHHHHHhhhcccCceeeccCc
Confidence            2211       257899887663 35567777778776666655544433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.29  E-value=0.3  Score=36.65  Aligned_cols=55  Identities=9%  Similarity=-0.011  Sum_probs=37.3

Q ss_pred             cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC----------c---cHHHHHHH-HhCCCCcEEEEeeC
Q 043853          116 NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG----------M---HMKLIKFL-LKLKAPRIVYVSCN  172 (222)
Q Consensus       116 ~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~----------~---~~~~~~~l-~~l~~~~~v~~~~~  172 (222)
                      +-.++.+|..+.+..+.  ++.+|+|++|||+..          .   ....+..+ +.++++|.+++.+.
T Consensus         4 ~~~~~~~D~le~l~~l~--d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLP--DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEEEECCHHHHHHTSC--TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cceEEechHHHHHhhCc--CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            34678899999887764  368999999999531          1   12222223 33789999887664

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=1.2  Score=33.20  Aligned_cols=79  Identities=16%  Similarity=0.109  Sum_probs=52.6

Q ss_pred             CCCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhh------hcCCCC
Q 043853           67 GSEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGG------DFGNAF  135 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~------~~~~~~  135 (222)
                      +++++|=.|+++| ++.    .+++.+.+|+.+|.+++.++.+.+.+.... -.++.++.+|+.+...      ......
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            3677777776655 444    445567899999999998888877665432 2358899999866431      111122


Q ss_pred             CCCcEEEECCC
Q 043853          136 PKPDIVISDPN  146 (222)
Q Consensus       136 ~~fD~ii~~pp  146 (222)
                      +..|+++.+..
T Consensus        81 G~iDilVnnAg   91 (254)
T d2gdza1          81 GRLDILVNNAG   91 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcCeeccccc
Confidence            47999998863

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.52  E-value=1.3  Score=33.16  Aligned_cols=78  Identities=14%  Similarity=-0.003  Sum_probs=54.5

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCC-CC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNA-FP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~-~~  136 (222)
                      +++++|=.|+++|.   ++..+++.+.+|+.+|.+++.++.+.+.+...+. ++..+..|+.+...      ..... ..
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            46788878876554   3335566678999999999999988888877654 58888888854321      11111 14


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.+.
T Consensus        86 ~idilvnnA   94 (259)
T d1xq1a_          86 KLDILINNL   94 (259)
T ss_dssp             CCSEEEEEC
T ss_pred             Ccccccccc
Confidence            689998875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.42  E-value=0.58  Score=35.07  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             CCeEEEEecccchhHH----HHhhcCCeEEEEeCC-HHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853           68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVV-PQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~-~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      ++++|=.|++.| ++.    .+++.+.+|+.++.+ +..++.+.+.+....-.++.++.+|+.+...      ......+
T Consensus         4 gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           4 GKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            667775565544 444    455667899999986 6677777666644322358889999865421      1111224


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      +.|++|.|.
T Consensus        83 ~iDiLVnnA   91 (260)
T d1x1ta1          83 RIDILVNNA   91 (260)
T ss_dssp             CCSEEEECC
T ss_pred             CCcEEEeec
Confidence            799999875

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=86.32  E-value=1.2  Score=33.72  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=51.0

Q ss_pred             CCCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      +++++|=.|+..| ++.    .+++.+.+|+.+|.++..++.+.+.+....-.++.++..|+.+...      .......
T Consensus        24 ~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          24 QGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            3577777776554 444    4455678999999999888777665543322347888888855432      1112235


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.+.
T Consensus       103 ~iDilvnnA  111 (294)
T d1w6ua_         103 HPNIVINNA  111 (294)
T ss_dssp             SCSEEEECC
T ss_pred             ccchhhhhh
Confidence            789998875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=1.3  Score=33.15  Aligned_cols=79  Identities=14%  Similarity=0.168  Sum_probs=52.0

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~  137 (222)
                      +++++|=.|+++|.   ++..+++.+.+|+.++.+++.++.+.+.+.......+.....|..+....      .....+.
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~   92 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG   92 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhCC
Confidence            36788888877664   33355566889999999999999888776655444577777776433211      1111236


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        93 ~~~li~na  100 (269)
T d1xu9a_          93 LDMLILNH  100 (269)
T ss_dssp             CSEEEECC
T ss_pred             cccccccc
Confidence            78887764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.08  E-value=0.77  Score=33.77  Aligned_cols=68  Identities=21%  Similarity=0.138  Sum_probs=43.8

Q ss_pred             CCCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853           67 GSEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI  142 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii  142 (222)
                      +++++|=.|+++| ++.    .+++.+.+|+.+|.+++.++..       +   .++...|+.+.........++.|+++
T Consensus         3 kgK~~lVTGas~G-IG~aia~~l~~~Ga~V~~~~r~~~~l~~~-------~---~~~~~~Dv~~~~~~~~~~~g~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRG-IGRAVADVLSQEGAEVTICARNEELLKRS-------G---HRYVVCDLRKDLDLLFEKVKEVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHT-------C---SEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHhc-------C---CcEEEcchHHHHHHHHHHhCCCcEEE
Confidence            3677888886655 443    4556678999999997654432       2   35667777654333222335799999


Q ss_pred             ECC
Q 043853          143 SDP  145 (222)
Q Consensus       143 ~~p  145 (222)
                      .|.
T Consensus        72 nnA   74 (234)
T d1o5ia_          72 LNA   74 (234)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            885

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.02  E-value=1.1  Score=33.63  Aligned_cols=77  Identities=16%  Similarity=0.133  Sum_probs=50.8

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      +++++|=.|+++|.   ++..+++.+.+|+.+|.+++.++.+.+.+...  ..+.++.+|+.+...      ......+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP--DVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            47788888866654   22345566789999999998888777666432  247888888865421      11112247


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        83 iD~lVnnA   90 (268)
T d2bgka1          83 LDIMFGNV   90 (268)
T ss_dssp             CCEEEECC
T ss_pred             cceecccc
Confidence            89998764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=0.91  Score=34.12  Aligned_cols=77  Identities=17%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             CCeEEEEecccchhHHH----Hhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853           68 SEIVLDLFCGTGTIGLT----LARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        68 ~~~vlDlg~G~G~~~~~----la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      +++|.=+--|+++++..    |++. +.+|+..+.+++..+.+.+.++..+. ++.++..|+.+...      ......+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            45665555555665553    4443 67999999999999999988887665 58889999866431      1111224


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      +.|++|.|.
T Consensus        81 ~iDiLVnNA   89 (275)
T d1wmaa1          81 GLDVLVNNA   89 (275)
T ss_dssp             SEEEEEECC
T ss_pred             CcEEEEEcC
Confidence            799999885

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.29  E-value=0.66  Score=32.22  Aligned_cols=42  Identities=10%  Similarity=0.123  Sum_probs=29.9

Q ss_pred             CCCCeEEEEecc-cchhHHHHhh-c-CCeEEEEeCCHHHHHHHHH
Q 043853           66 DGSEIVLDLFCG-TGTIGLTLAR-W-VKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        66 ~~~~~vlDlg~G-~G~~~~~la~-~-~~~v~gvD~~~~~i~~a~~  107 (222)
                      .++++||=.||| .|.+++.+++ . ...|+++|.++.-.+.+++
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH
Confidence            348899988887 3334444554 2 4689999999988887775

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=84.99  E-value=3.8  Score=27.18  Aligned_cols=89  Identities=16%  Similarity=0.186  Sum_probs=57.6

Q ss_pred             CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-cHHHHHHHHhCCCC-cEE
Q 043853           90 KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-HMKLIKFLLKLKAP-RIV  167 (222)
Q Consensus        90 ~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-~~~~~~~l~~l~~~-~~v  167 (222)
                      ++|.-||=++...+..+..++..|.. +.. ..|..+....+..  ..||+|++|.-.++. .-.+++.++...+. .++
T Consensus         1 P~ILiVDDd~~~~~~l~~~L~~~g~~-v~~-~~~~~~al~~l~~--~~~dlil~D~~mP~~~G~el~~~lr~~~~~~pvI   76 (140)
T d1qkka_           1 PSVFLIDDDRDLRKAMQQTLELAGFT-VSS-FASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILALDPDLPMI   76 (140)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE-EEE-ESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCE-EEE-eCChHHHHHHHhc--cCcchHHHhhccCCCCHHHHHHHHHHhCCCCcEE
Confidence            47888999999999999999988874 433 3566666554432  479999998643322 35778888775554 445


Q ss_pred             EEeeCccchHhhHHHh
Q 043853          168 YVSCNPATCARDLDYL  183 (222)
Q Consensus       168 ~~~~~~~~~~~~~~~l  183 (222)
                      +++... ......+.+
T Consensus        77 ~lT~~~-~~~~~~~a~   91 (140)
T d1qkka_          77 LVTGHG-DIPMAVQAI   91 (140)
T ss_dssp             EEECGG-GHHHHHHHH
T ss_pred             EEECCC-CHHHHHHHH
Confidence            555433 333334444

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.48  E-value=0.67  Score=32.21  Aligned_cols=42  Identities=10%  Similarity=0.040  Sum_probs=31.3

Q ss_pred             CCCCeEEEEecccchhHH-HHhh--cCCeEEEEeCCHHHHHHHHH
Q 043853           66 DGSEIVLDLFCGTGTIGL-TLAR--WVKHVYGYEVVPQAISDACR  107 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~-~la~--~~~~v~gvD~~~~~i~~a~~  107 (222)
                      .++++|+=+|+|.++... .+++  .+.+|+++|.+++-++.+++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            348899999998766554 3333  34589999999988877765

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=84.14  E-value=1.3  Score=33.19  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=50.6

Q ss_pred             CCeEEEEecccch---hHHHHhhcCCeEEEEeCC-HHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVV-PQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~-~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      ++++|=.|++.|.   ++..+++.+.+|+.++.+ +..++.+.+.++..+. ++..+.+|+.+...      ......++
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            6677766666553   223555667899999987 4567777777777665 48888899865421      11112247


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.|.
T Consensus        86 iDiLVnnA   93 (261)
T d1geea_          86 LDVMINNA   93 (261)
T ss_dssp             CCEEEECC
T ss_pred             CCEeeccc
Confidence            89999885

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.65  E-value=5.4  Score=27.84  Aligned_cols=30  Identities=23%  Similarity=0.467  Sum_probs=21.9

Q ss_pred             ccchhHHHHhh---cCCeEEEEeCCHHHHHHHH
Q 043853           77 GTGTIGLTLAR---WVKHVYGYEVVPQAISDAC  106 (222)
Q Consensus        77 G~G~~~~~la~---~~~~v~gvD~~~~~i~~a~  106 (222)
                      |.|.+++.+|.   .+.+|+|+|+++..++..+
T Consensus         7 GlG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           7 GSGYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             CCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             CCChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            56666664432   3569999999999887765

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.54  E-value=1.6  Score=32.19  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCCC
Q 043853           68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPKP  138 (222)
Q Consensus        68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~f  138 (222)
                      ++++|=.|++.|.   ++..+++.+.+|+.+|.+++.++.+.+.+.    .++..+..|+.+..      .......+..
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG----ANGKGLMLNVTDPASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC----CCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence            5677777765543   223555567899999999988887766553    24677888875542      1111223479


Q ss_pred             cEEEECC
Q 043853          139 DIVISDP  145 (222)
Q Consensus       139 D~ii~~p  145 (222)
                      |+++.+.
T Consensus        80 DilVnnA   86 (243)
T d1q7ba_          80 DILVNNA   86 (243)
T ss_dssp             SEEEECC
T ss_pred             ceehhhh
Confidence            9999875

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.43  E-value=1.5  Score=29.99  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=35.9

Q ss_pred             ccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853           77 GTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP  148 (222)
Q Consensus        77 G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~  148 (222)
                      |.|..+..    |++.+.+|++.|.++..++.+++.    +   .. ...+..+...       ..|+|++.-|..
T Consensus         7 GlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~----~---~~-~~~~~~e~~~-------~~d~ii~~v~~~   67 (161)
T d1vpda2           7 GLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA----G---AE-TASTAKAIAE-------QCDVIITMLPNS   67 (161)
T ss_dssp             CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T---CE-ECSSHHHHHH-------HCSEEEECCSSH
T ss_pred             ehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh----h---hh-hcccHHHHHh-------CCCeEEEEcCCH
Confidence            44554444    445567999999999988777653    2   22 2344444433       479999987643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=82.39  E-value=1.4  Score=32.67  Aligned_cols=76  Identities=16%  Similarity=0.127  Sum_probs=50.7

Q ss_pred             CCCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853           67 GSEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP  136 (222)
Q Consensus        67 ~~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~  136 (222)
                      +++++|=.|++.| ++.    .+++.+.+|+.+|.+++.++.+.+.+..  -.++.++.+|+.+...      ......+
T Consensus         5 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--CCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            3667777775554 443    5556678999999999988887776632  2258899999865431      1111224


Q ss_pred             CCcEEEECC
Q 043853          137 KPDIVISDP  145 (222)
Q Consensus       137 ~fD~ii~~p  145 (222)
                      ..|+++.+.
T Consensus        82 ~iDiLVnnA   90 (251)
T d1zk4a1          82 PVSTLVNNA   90 (251)
T ss_dssp             SCCEEEECC
T ss_pred             CceEEEecc
Confidence            799998875

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.31  E-value=1.8  Score=31.79  Aligned_cols=73  Identities=14%  Similarity=0.235  Sum_probs=48.4

Q ss_pred             EEEEecccchhHH----HHhhcCCe-------EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCC
Q 043853           71 VLDLFCGTGTIGL----TLARWVKH-------VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGN  133 (222)
Q Consensus        71 vlDlg~G~G~~~~----~la~~~~~-------v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~  133 (222)
                      ||=-|+++| ++.    .+++.+.+       ++.++.+++.++.+.+.++..+. ++.++.+|+.+...      ....
T Consensus         4 vlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           4 LLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence            444455544 444    44454544       89999999999998888877664 48888888865431      1122


Q ss_pred             CCCCCcEEEECC
Q 043853          134 AFPKPDIVISDP  145 (222)
Q Consensus       134 ~~~~fD~ii~~p  145 (222)
                      ..+..|+++.|.
T Consensus        82 ~~g~iDilvnnA   93 (240)
T d2bd0a1          82 RYGHIDCLVNNA   93 (240)
T ss_dssp             HTSCCSEEEECC
T ss_pred             HcCCcceeeccc
Confidence            335799999875

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.83  E-value=4.8  Score=26.50  Aligned_cols=88  Identities=8%  Similarity=0.014  Sum_probs=55.6

Q ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC-CCccHHHHHHHHhCCCC-cEEE
Q 043853           91 HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR-PGMHMKLIKFLLKLKAP-RIVY  168 (222)
Q Consensus        91 ~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~-~~~~~~~~~~l~~l~~~-~~v~  168 (222)
                      +|.-+|=++...+..+..+...|.. +. ...|..+....+..  ..||+|++|.-. ..-...++..++...+. .+++
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~~-v~-~a~~~~eAl~~l~~--~~~dlvilD~~mp~~~G~e~~~~lr~~~~~~piI~   77 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGIK-VE-SAERGKEAYKLLSE--KHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIV   77 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTCE-EE-EESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHhhc--cccccchHHHhhhhhhHHHHHHHHHHhCCCCCEEE
Confidence            5778999999999999999988874 44 34566555443322  479999998531 22345777777765544 4555


Q ss_pred             EeeCccchHhhHHHh
Q 043853          169 VSCNPATCARDLDYL  183 (222)
Q Consensus       169 ~~~~~~~~~~~~~~l  183 (222)
                      ++... ......+.+
T Consensus        78 lT~~~-~~~~~~~a~   91 (137)
T d1ny5a1          78 ITGHG-TIKTAVEAM   91 (137)
T ss_dssp             EEETT-CHHHHHHHH
T ss_pred             EECCC-CHHHHHHHH
Confidence            55543 333333444

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=80.70  E-value=1.4  Score=30.65  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=45.0

Q ss_pred             ccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccH
Q 043853           77 GTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHM  152 (222)
Q Consensus        77 G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~  152 (222)
                      |.|..+..+|    +.+.+|++.|.+++.++...++-...   ....-.....+.....    ...|.++...|......
T Consensus         9 GlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~----~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           9 GLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG---TKVLGAHSLEEMVSKL----KKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT---SSCEECSSHHHHHHHB----CSSCEEEECSCTTHHHH
T ss_pred             eEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccc---ccccchhhhhhhhhhh----cccceEEEecCchHHHH
Confidence            4455555444    45679999999999888776542211   1111222333332221    25677777766443334


Q ss_pred             HHHHHHHh-CCCCcEEE
Q 043853          153 KLIKFLLK-LKAPRIVY  168 (222)
Q Consensus       153 ~~~~~l~~-l~~~~~v~  168 (222)
                      .+.+.+.. ++++.+++
T Consensus        82 ~v~~~l~~~~~~g~iii   98 (176)
T d2pgda2          82 NFIEKLVPLLDIGDIII   98 (176)
T ss_dssp             HHHHHHHHHCCTTCEEE
T ss_pred             HHHHHHHhccccCcEEE
Confidence            44444443 56665544

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.34  E-value=3.4  Score=30.44  Aligned_cols=74  Identities=15%  Similarity=0.114  Sum_probs=49.0

Q ss_pred             CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853           67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK  137 (222)
Q Consensus        67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~  137 (222)
                      +++++|=.|+++|.   ++..+++.+.+|+.+|.+++.++.+.+..     .++.++.+|+.+...      ......++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRFGR   79 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            36788888876553   23355566789999999988877665542     357888889855421      11112247


Q ss_pred             CcEEEECC
Q 043853          138 PDIVISDP  145 (222)
Q Consensus       138 fD~ii~~p  145 (222)
                      .|+++.+.
T Consensus        80 iDilVnnA   87 (250)
T d1ydea1          80 LDCVVNNA   87 (250)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEecc
Confidence            89998875

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.29  E-value=3.3  Score=30.58  Aligned_cols=78  Identities=19%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             CCCCeEEEEecccchhHHHH----hhcCCeEEE-EeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCC
Q 043853           66 DGSEIVLDLFCGTGTIGLTL----ARWVKHVYG-YEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNA  134 (222)
Q Consensus        66 ~~~~~vlDlg~G~G~~~~~l----a~~~~~v~g-vD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~  134 (222)
                      ..++++|=.| |+++++.++    ++.+.+|+. ...+....+.+.+.++..+. ++..+.+|+.+..      ......
T Consensus         4 L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           4 LAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHH
Confidence            3577888555 556655544    455667775 46778888999999888776 5888999986532      111112


Q ss_pred             CCCCcEEEECC
Q 043853          135 FPKPDIVISDP  145 (222)
Q Consensus       135 ~~~fD~ii~~p  145 (222)
                      .+..|+++.+.
T Consensus        82 ~g~idilinna   92 (259)
T d1ja9a_          82 FGGLDFVMSNS   92 (259)
T ss_dssp             HSCEEEEECCC
T ss_pred             cCCCcEEEecc
Confidence            24689998876

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.14  E-value=7.7  Score=27.26  Aligned_cols=37  Identities=16%  Similarity=-0.027  Sum_probs=24.4

Q ss_pred             eEEEEecccch--hHHHHhhcCCeEEEEeCCHHHHHHHH
Q 043853           70 IVLDLFCGTGT--IGLTLARWVKHVYGYEVVPQAISDAC  106 (222)
Q Consensus        70 ~vlDlg~G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~  106 (222)
                      +|-=+|+|.=+  ++..+|..+.+|+|+|.++.-++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            34445655322  22355666789999999998887664