Citrus Sinensis ID: 043856
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 275 | 2.2.26 [Sep-21-2011] | |||||||
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.603 | 0.168 | 0.287 | 2e-10 | |
| Q9LRR4 | 1054 | Putative disease resistan | yes | no | 0.610 | 0.159 | 0.269 | 8e-09 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.738 | 0.207 | 0.289 | 4e-08 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.603 | 0.167 | 0.293 | 1e-07 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.712 | 0.202 | 0.277 | 1e-07 | |
| Q9LRR5 | 1424 | Putative disease resistan | no | no | 0.534 | 0.103 | 0.273 | 2e-06 | |
| Q8W4J9 | 908 | Disease resistance protei | no | no | 0.378 | 0.114 | 0.362 | 0.0003 | |
| Q9FJB5 | 901 | Disease resistance RPP8-l | no | no | 0.378 | 0.115 | 0.346 | 0.0003 | |
| P0DI18 | 1049 | Probable disease resistan | no | no | 0.36 | 0.094 | 0.345 | 0.0007 | |
| P0DI17 | 1049 | Probable disease resistan | no | no | 0.36 | 0.094 | 0.345 | 0.0007 |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 53/219 (24%)
Query: 59 RKNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWL--TSLTNLRDLKLVFCENCEHLPP 116
R K+ ++LEAL+P N++ L II +GG P W+ + L + +++ C+NC LPP
Sbjct: 688 RYESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPP 747
Query: 117 LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEI---- 171
G+LP LE LEL+ N +E + EDD S S+ +FP LK L I
Sbjct: 748 FGELPCLENLELQ---------NGSAEVEYVEEDDVHSRFSTRR--SFPSLKKLRIWFFR 796
Query: 172 -----------KELDLLEEW-----------------------NYRITRKENISIMPRLS 197
++ +LEE N +IS + L+
Sbjct: 797 SLKGLMKEEGEEKFPMLEEMAILYCPLFVFPTLSSVKKLEVHGNTNTRGLSSISNLSTLT 856
Query: 198 SLKVGSCNKLKALPDYLLQT-TALQELSIYSCENLEELP 235
SL++G+ + +LP+ + + T L+ LS + +NL++LP
Sbjct: 857 SLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKDLP 895
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 51 DGEDEERRRKNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLT--SLTNLRDLKLVFC 108
E+ + + + ++ E L+P ++EKL I Y G P WL+ S + + ++L C
Sbjct: 741 SSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLREC 800
Query: 109 ENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLK 167
+ C LP LG+LP L++L + + ++ +G +F S +
Sbjct: 801 QYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFY-----------FSDQQLRDQDQQPFR 849
Query: 168 SLEIKELDLLEEW----NYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQE 222
SLE D L +W + R+TR + + P L L + C +L LP +L +L
Sbjct: 850 SLETLRFDNLPDWQEWLDVRVTRGD---LFPSLKKLFILRCPELTGTLPTFL---PSLIS 903
Query: 223 LSIYSCENLEELP 235
L IY C L+ P
Sbjct: 904 LHIYKCGLLDFQP 916
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 110/252 (43%), Gaps = 49/252 (19%)
Query: 60 KNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWL--TSLTNLRDLKLVFCENCEHLPPL 117
K+ D ++LEAL+P N++ L I +GG LP W+ + L N+ +++ CENC LPP
Sbjct: 686 KHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPF 745
Query: 118 GKLP-LEKLELR------------------------------DLKSVKRVGNE--FLGIE 144
G+LP LE LEL +LK + ++ E F +E
Sbjct: 746 GELPCLESLELHTGSADVEYVEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLE 805
Query: 145 EISED------DPSSSSSSS---SVTAFPKLKSLE----IKELDLLEEWNYRITRKENIS 191
E++ P+ SS + VT L+S+ + LD+ + +E
Sbjct: 806 EMTFYWCPMFVIPTLSSVKTLKVIVTDATVLRSISNLRALTSLDISDNVEATSLPEEMFK 865
Query: 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLS-S 250
+ L LK+ LK LP L AL+ L C+ LE LP + T + LS S
Sbjct: 866 SLANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVS 925
Query: 251 LRIGLKVLPDYL 262
+ LK LP+ L
Sbjct: 926 NCMMLKCLPEGL 937
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 49/215 (22%)
Query: 59 RKNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWL--TSLTNLRDLKLVFCENCEHLPP 116
R ++ ++LEAL+P N++ L II + G LP W+ + L N+ + + CENC LPP
Sbjct: 695 RYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPP 754
Query: 117 LGKLP-LEKLELRD--------------------------------LKSVKRV--GNEFL 141
G+LP LE LEL+D LK ++R+ +F
Sbjct: 755 FGELPCLESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFP 814
Query: 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKV 201
+EE+ D + FP L S +K+L++ E + +IS + L+SLK+
Sbjct: 815 VLEEMKISD-------CPMFVFPTLSS--VKKLEIWGEAD--AGGLSSISNLSTLTSLKI 863
Query: 202 GSCNKLKALPDYLLQTT-ALQELSIYSCENLEELP 235
S + + +L + + + L LS+ ENL+ELP
Sbjct: 864 FSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELP 898
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 101/256 (39%), Gaps = 60/256 (23%)
Query: 66 QLLEALQPPLNVEKLWIIFYGGNILPKWL--TSLTNLRDLKLVFCENCEHLPPLGKLP-L 122
++LEAL+P N+ L I + G LP+W+ + L N+ + + NC LPP G LP L
Sbjct: 696 KVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCL 755
Query: 123 EKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEI----------- 171
E LEL + +E + E D S + FP L+ L+I
Sbjct: 756 ESLELHWGSA---------DVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLK 806
Query: 172 ----KELDLLEEW------------------NYRITRKENISIMP--------RLSSLKV 201
++ +LEE + RI + + P L L +
Sbjct: 807 KEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTI 866
Query: 202 GSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI----GLKV 257
CN LK LP L AL+ L I C LE LP + + L+ L + LK
Sbjct: 867 SRCNNLKELPTSLASLNALKSLKIQLCCALESLP---EEGLEGLSSLTELFVEHCNMLKC 923
Query: 258 LPDYLLRTTMLQELSI 273
LP+ L T L L I
Sbjct: 924 LPEGLQHLTTLTSLKI 939
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWL--TSLTNLRDLKLVFCENCEHLPPLGKLP- 121
+++L L+P +++ I Y G PKWL +S + + L C C LPP+G+LP
Sbjct: 749 KEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPS 808
Query: 122 LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWN 181
L+ L + +++VG +F E S P +SL+I + + W+
Sbjct: 809 LKYLSIEKFNILQKVGLDFFFGENNSRGVP--------------FQSLQILKFYGMPRWD 854
Query: 182 YRITRKENISIMPRLSSLKVGSCNKL-KALPDYLLQTTALQELSIYSC 228
I + I P L L + C L K P+ L +T E++I C
Sbjct: 855 EWICPELEDGIFPCLQKLIIQRCPSLRKKFPEGLPSST---EVTISDC 899
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 99 NLRDLKLVFCENCEHLPPLGKLPLEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSS 158
+L L L++C E P+ LEKL LKSV+ FLG S
Sbjct: 771 HLVHLFLIYCGMEEDPMPI----LEKL--LHLKSVRLARKAFLG-----------SRMVC 813
Query: 159 SVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTT 218
S FP+L +EI + LEEW I + + MP L +L + C KLK LPD L T
Sbjct: 814 SKGGFPQLCVIEISKESELEEW---IVEEGS---MPCLRTLTIDDCKKLKELPDGLKYIT 867
Query: 219 ALQELSI 225
+L+EL I
Sbjct: 868 SLKELKI 874
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 99 NLRDLKLVFCENCEHLPPLGKLPLEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSS 158
++ + L+FC E P+ LEKL LKSV+ F+G +
Sbjct: 762 HIAHIYLLFCHMEEDPMPI----LEKL--LHLKSVELRRKAFIGRRMVC----------- 804
Query: 159 SVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTT 218
S FP+L++L+I E LEEW I + + MP L L + SC KL+ LPD L T
Sbjct: 805 SKGGFPQLRALQISEQSELEEW---IVEEGS---MPCLRDLIIHSCEKLEELPDGLKYVT 858
Query: 219 ALQELSI 225
+L+EL I
Sbjct: 859 SLKELKI 865
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSC 204
E+ S S FP+L+ L IK L+ E+W K S MP L +L + C
Sbjct: 807 ELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDW------KVEESSMPVLHTLDIRDC 860
Query: 205 NKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSL 251
KLK LPD L + L +S++ C LEE P+P R + L L
Sbjct: 861 RKLKQLPDEHL-PSHLTSISLFFC-CLEEDPMPTLERLVHLKELQLL 905
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSC 204
E+ S S FP+L+ L IK L+ E+W K S MP L +L + C
Sbjct: 807 ELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDW------KVEESSMPVLHTLDIRDC 860
Query: 205 NKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSL 251
KLK LPD L + L +S++ C LEE P+P R + L L
Sbjct: 861 RKLKQLPDEHL-PSHLTSISLFFC-CLEEDPMPTLERLVHLKELQLL 905
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 275 | ||||||
| 224114802 | 201 | predicted protein [Populus trichocarpa] | 0.607 | 0.830 | 0.451 | 7e-28 | |
| 224114806 | 766 | cc-nbs-lrr resistance protein [Populus t | 0.6 | 0.215 | 0.471 | 9e-28 | |
| 224118674 | 960 | cc-nbs-lrr resistance protein [Populus t | 0.614 | 0.176 | 0.416 | 6e-27 | |
| 224143886 | 541 | predicted protein [Populus trichocarpa] | 0.614 | 0.312 | 0.416 | 1e-26 | |
| 224122712 | 945 | cc-nbs-lrr resistance protein [Populus t | 0.643 | 0.187 | 0.467 | 3e-26 | |
| 224114844 | 318 | predicted protein [Populus trichocarpa] | 0.64 | 0.553 | 0.463 | 4e-26 | |
| 224114832 | 296 | predicted protein [Populus trichocarpa] | 0.647 | 0.601 | 0.428 | 7e-26 | |
| 224122696 | 906 | cc-nbs-lrr resistance protein [Populus t | 0.589 | 0.178 | 0.461 | 2e-25 | |
| 147772835 | 920 | hypothetical protein VITISV_006248 [Viti | 0.625 | 0.186 | 0.428 | 8e-25 | |
| 359482788 | 903 | PREDICTED: putative disease resistance p | 0.625 | 0.190 | 0.423 | 4e-24 |
| >gi|224114802|ref|XP_002332286.1| predicted protein [Populus trichocarpa] gi|222832448|gb|EEE70925.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 56 ERRRKNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP 115
E+ ++ L+EAL+PP +E L I FYGG +LP W+T+LT L++LKL +C N E LP
Sbjct: 2 EKTELQANEDSLIEALRPPSVMEDLTIWFYGGIVLPNWMTTLTRLQELKLAYCTNVEVLP 61
Query: 116 PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKEL 174
PLG+LP LE L L LK V+R+ FLGI E + VTAFPKLK I L
Sbjct: 62 PLGRLPNLESLVLSSLK-VRRLDCGFLGINE---------GEIARVTAFPKLKKHWIWHL 111
Query: 175 DLLEEWN---YRI----TRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227
+ +EEW+ R+ +ISIMP+L L + C+ L+ALPDY+L LQEL I
Sbjct: 112 EEVEEWDGIERRVGEEDANTTSISIMPQLRELMILHCSLLRALPDYVL-AAHLQELDISI 170
Query: 228 CENLEE 233
C NL +
Sbjct: 171 CPNLRK 176
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114806|ref|XP_002332287.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222832449|gb|EEE70926.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 11/176 (6%)
Query: 61 NEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKL 120
N ++ L+EAL+PP ++E L I YGG LP W+ +LT L++LKL +C N E LPPLG+L
Sbjct: 556 NRQNSILIEALRPPSDLENLTISRYGGLDLPNWMMTLTRLQELKLCYCANLEVLPPLGRL 615
Query: 121 P-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEE 179
P LE L LR LK V+R+ FLG+E+ E+ + + VTAFPKLK LEI L+ +EE
Sbjct: 616 PNLEGLVLRSLK-VRRLDAGFLGLEK-DENASINEGEIARVTAFPKLKELEIWYLEEVEE 673
Query: 180 WN---YRI----TRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228
W+ R+ +ISIMP+L L + +C L+ALPDY+L LQEL I C
Sbjct: 674 WDGIERRVGEEDANTTSISIMPQLRDLIIENCPLLRALPDYVL-AAPLQELDISRC 728
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118674|ref|XP_002317879.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222858552|gb|EEE96099.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 11/180 (6%)
Query: 55 EERRRKNEKDEQLLEALQPPLNVEKLWIIFYGG--NILPKWLTSLTNLRDLKLVFCENCE 112
E R +++DE++++AL+PP ++E L I YGG +P W+ L L + + C NC
Sbjct: 746 ECRALIHDQDEEIIQALEPPPSLEHLEIEHYGGIKMKIPNWMMQLAKLSKICISKCRNCN 805
Query: 113 HLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEI 171
+LPPLGKLP LE LE+ D++SV +VG+EFLGIE +++ AFPKLK L
Sbjct: 806 NLPPLGKLPFLEYLEISDMRSVHKVGDEFLGIETNHKENEDKKK------AFPKLKELRF 859
Query: 172 KELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENL 231
+ +EW+ I +E + MP L L +G C+KL+ALP LLQ T L+EL++ C +L
Sbjct: 860 SHMYAWDEWDALIALEEEV--MPCLLRLYIGFCDKLEALPAQLLQMTTLEELAVDHCGSL 917
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143886|ref|XP_002336089.1| predicted protein [Populus trichocarpa] gi|222872018|gb|EEF09149.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 11/180 (6%)
Query: 55 EERRRKNEKDEQLLEALQPPLNVEKLWIIFYGG--NILPKWLTSLTNLRDLKLVFCENCE 112
E R +++DE++++AL+PP ++E L I YGG +P W+ L L + + C NC
Sbjct: 327 ECRALIHDQDEEIIQALEPPPSLEHLEIEHYGGIKMKIPNWMMQLAKLSKICISKCRNCN 386
Query: 113 HLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEI 171
+LPPLGKLP LE LE+ D++SV +VG+EFLGIE +++ AFPKLK L
Sbjct: 387 NLPPLGKLPFLEYLEISDMRSVHKVGDEFLGIETNHKENEDKKK------AFPKLKELRF 440
Query: 172 KELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENL 231
+ +EW+ I +E +MP L L +G C+KL+ALP LLQ T L+EL++ C +L
Sbjct: 441 SHMYAWDEWDALIALEE--EVMPCLLRLYIGFCDKLEALPAQLLQMTTLEELAVDHCGSL 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 54 DEERRRKNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEH 113
D E+ + L+EALQPP N+E L I YGG LP W+ +LT L L+L C E
Sbjct: 748 DREKTELQANEGSLIEALQPPSNLEYLTISSYGGFDLPNWMMTLTRLLALELHDCTKLEV 807
Query: 114 LPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLE-- 170
LPPLG+LP LE+L LR LK V+R+ FLGIE+ E+ + + VTAFPKLK LE
Sbjct: 808 LPPLGRLPNLERLALRSLK-VRRLDAGFLGIEK-DENASINEGEIARVTAFPKLKILEIW 865
Query: 171 -IKELDLLEEWNY--RITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227
IKE D +E + +ISIMP+L L + +C L+ALPDY+L LQEL I
Sbjct: 866 NIKEWDGIERRSVGEEDATTTSISIMPQLRQLTIHNCPLLRALPDYVL-AAPLQELYIGG 924
Query: 228 CENLEE 233
C NL E
Sbjct: 925 CPNLGE 930
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114844|ref|XP_002332296.1| predicted protein [Populus trichocarpa] gi|222832458|gb|EEE70935.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 116/192 (60%), Gaps = 16/192 (8%)
Query: 47 GEVVDGEDE-ERRRKNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKL 105
G V D D E + KN+K L +L+PP ++E L I YGG LP W+ +LT L++LKL
Sbjct: 95 GGVEDASDAAEAQLKNKKR---LRSLRPPSDLENLTISRYGGLHLPNWMMTLTRLQELKL 151
Query: 106 VFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFP 164
+C N E LPPLG+LP L+ L LR LK V+R+ FLGIE+ E+ + + VTAFP
Sbjct: 152 GYCANLEVLPPLGRLPNLDGLVLRSLK-VRRLDAGFLGIEK-DENASINEGEIARVTAFP 209
Query: 165 KLKSLEIKELDLLEEWNYRITR--------KENISIMPRLSSLKVGSCNKLKALPDYLLQ 216
KLK LEI L+ +EEW+ TR ISIMP+L L + +C L+ALPDY+L
Sbjct: 210 KLKELEIWYLEEVEEWDGIGTRVGEEDANTTSIISIMPQLRDLIIENCPLLRALPDYVL- 268
Query: 217 TTALQELSIYSC 228
LQEL I C
Sbjct: 269 AAPLQELDISRC 280
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114832|ref|XP_002332293.1| predicted protein [Populus trichocarpa] gi|222832455|gb|EEE70932.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 111/189 (58%), Gaps = 11/189 (5%)
Query: 54 DEERRRKNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEH 113
D E+ ++ L+EALQPP ++E L I YGG LP W+ LT L++L LV C N +
Sbjct: 88 DGEKTELQANEDALIEALQPPSDLENLIISDYGGIFLPNWMMILTRLQNLVLVNCRNLDV 147
Query: 114 LPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIK 172
LPPLG+LP LE L L LK ++R+ FLGIE + + + + V AFPKLK L I
Sbjct: 148 LPPLGRLPNLESLSLTRLK-LRRLDGGFLGIENVGNTN-INEGEIARVAAFPKLKKLSIW 205
Query: 173 ELDLLEEWN---YRITRKE----NISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSI 225
L LEEW+ R+ ++ +I IMP+L ++ C L+ALPDY+L LQ+ SI
Sbjct: 206 HLKELEEWDGIERRVVEEDSTTTSIFIMPQLVEFRILKCPLLRALPDYVL-IAPLQKFSI 264
Query: 226 YSCENLEEL 234
C NL +L
Sbjct: 265 EYCPNLRKL 273
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 107/180 (59%), Gaps = 18/180 (10%)
Query: 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP 121
E + L+E L+PP ++E L I YGG LP W+ +LT LR L L CEN E LPPLG+LP
Sbjct: 708 EHEGSLIEVLRPPSDLENLTIRGYGGLDLPNWMMTLTRLRMLSLGPCENVEVLPPLGRLP 767
Query: 122 -LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEW 180
LE+L L LK V+R+ FLG+E+ + + VTAFPKLKS I+ L+ +EEW
Sbjct: 768 NLERLLLFFLK-VRRLDAGFLGVEK-----DENEGEIARVTAFPKLKSFRIRYLEEIEEW 821
Query: 181 NYRITRKEN---------ISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENL 231
+ I R+ ISIMP+L L + C L+ALPDY+L LQEL I C NL
Sbjct: 822 D-GIERRVGEEDANTTSIISIMPQLQYLGIRKCPLLRALPDYVL-AAPLQELEIMGCPNL 879
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147772835|emb|CAN71670.1| hypothetical protein VITISV_006248 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 111/196 (56%), Gaps = 24/196 (12%)
Query: 60 KNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWL--TSLTNLRDLKLVFCENCEHLPPL 117
+ E + + EALQP N++ L I +YG P W+ +SL L+ L L FCE C LPPL
Sbjct: 737 REEGTKGVAEALQPHPNLKALHIYYYGDREWPNWMMGSSLAQLKILNLKFCERCPCLPPL 796
Query: 118 GKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDL 176
G+LP LE+L + + VK +G+EFLG SS T FPKLK L I LD
Sbjct: 797 GQLPVLEELGIWKMYGVKCIGSEFLG---------------SSSTVFPKLKELAISGLDE 841
Query: 177 LEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEEL-- 234
L++W I KE SIMP L+ L + C KL+ LPD++LQ T LQ L+I S LE
Sbjct: 842 LKQWE--IKEKEERSIMPCLNHLIMRGCPKLEGLPDHVLQRTTLQILNIRSSPILERRYR 899
Query: 235 -PIPEDR-RTTDIPRL 248
I EDR + + IP++
Sbjct: 900 KDIGEDRHKISHIPQV 915
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482788|ref|XP_003632840.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 110/196 (56%), Gaps = 24/196 (12%)
Query: 60 KNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWL--TSLTNLRDLKLVFCENCEHLPPL 117
+ E + + EALQP N++ L I +YG P W+ +SL L+ L L FCE C LPPL
Sbjct: 720 REEGTKGVAEALQPHPNLKALHIYYYGDREWPNWMMGSSLAQLKILNLKFCERCPCLPPL 779
Query: 118 GKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDL 176
G+LP LE+L + + VK +G+EFLG SS T FPKLK L I LD
Sbjct: 780 GQLPVLEELGIWKMYGVKYIGSEFLG---------------SSSTVFPKLKELAISGLDK 824
Query: 177 LEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEEL-- 234
L++W I KE SIMP L+ L + C KL+ LP ++LQ T LQ L+I S LE
Sbjct: 825 LKQWE--IKEKEERSIMPCLNHLIMRGCPKLEGLPGHVLQRTTLQILNIRSSPILERRYR 882
Query: 235 -PIPEDR-RTTDIPRL 248
I EDR + + IP++
Sbjct: 883 KDIGEDRHKISHIPQV 898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 275 | ||||||
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.363 | 0.095 | 0.401 | 3.2e-05 | |
| TAIR|locus:2826978 | 1049 | AT1G59218 [Arabidopsis thalian | 0.363 | 0.095 | 0.401 | 3.2e-05 |
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 47/117 (40%), Positives = 63/117 (53%)
Query: 161 TAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTAL 220
+ FP+L L++ ELD LEEW I E+ S MP+L +L++ C KLK LP+ Q L
Sbjct: 919 SGFPQLHKLKLSELDGLEEW---IV--EDGS-MPQLHTLEIRRCPKLKKLPNGFPQ---L 969
Query: 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTMLQELSI 273
Q L + E EE I ED +P L +LRI LK LPD L L+ L++
Sbjct: 970 QNLELNELEEWEEW-IVEDG---SMPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLTV 1022
|
|
| TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 47/117 (40%), Positives = 63/117 (53%)
Query: 161 TAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTAL 220
+ FP+L L++ ELD LEEW I E+ S MP+L +L++ C KLK LP+ Q L
Sbjct: 919 SGFPQLHKLKLSELDGLEEW---IV--EDGS-MPQLHTLEIRRCPKLKKLPNGFPQ---L 969
Query: 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTMLQELSI 273
Q L + E EE I ED +P L +LRI LK LPD L L+ L++
Sbjct: 970 QNLELNELEEWEEW-IVEDG---SMPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLTV 1022
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_scaffold_223000003 | hypothetical protein (201 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 275 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.64 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.59 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.58 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.56 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.35 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.32 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.24 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.17 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.13 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.12 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.98 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.98 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.96 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.95 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.92 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.85 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.61 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.61 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.59 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.53 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.53 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.49 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.49 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.42 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.39 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.3 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.21 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.18 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.15 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.12 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.12 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.1 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.02 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.0 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.93 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.91 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.82 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.79 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.78 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.77 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.7 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.66 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.65 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.6 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.49 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.46 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.14 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.07 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.01 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.82 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.64 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.35 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.73 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 95.66 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.5 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 95.36 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.94 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.93 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.87 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 94.67 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.52 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.18 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 94.1 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.06 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.96 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 93.65 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 93.6 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 93.03 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 92.47 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 91.76 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.6 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.39 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.39 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 83.5 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 83.42 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=153.72 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=106.7
Q ss_pred hHHHHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCcc
Q 043856 63 KDEQLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 63 ~~~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
.+..+|+++..+++|+.|+++++.... +| .++.+++|++|++++|..+..+|. ++.++ |+.|++++|..++.+|..
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 344556666666677777776654333 44 355666666666666655555553 45555 666666666555555543
Q ss_pred ccccccccCCCCCCCC-----------------------CCCC-------------------------------CCCCCc
Q 043856 140 FLGIEEISEDDPSSSS-----------------------SSSS-------------------------------VTAFPK 165 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~-----------------------~~~~-------------------------------l~~l~~ 165 (275)
. ....+..+.+..+. ..+. ...+++
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 2 11111100000000 0000 001234
Q ss_pred ccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCC
Q 043856 166 LKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDI 245 (275)
Q Consensus 166 L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l 245 (275)
|+.|++++|+.+..+|..+ ..+++|+.|++.+|++++.+|..+ ++++|+.|++++|..+..+|. ..
T Consensus 780 L~~L~Ls~n~~l~~lP~si------~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-------~~ 845 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSI------QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-------IS 845 (1153)
T ss_pred chheeCCCCCCccccChhh------hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-------cc
Confidence 5555555554444444322 256777777777777777777655 467777777777766665554 13
Q ss_pred Ccccceecc---ccccchhhcCCCCccEEEec
Q 043856 246 PRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 246 ~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
++|+.|+++ ++.+|.+++.+++|+.|+++
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECC
Confidence 466666664 66677777777777777664
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-15 Score=149.49 Aligned_cols=193 Identities=25% Similarity=0.339 Sum_probs=120.0
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.+|+.|++.++....+|..+..+++|+.|++++|..++.+|.+..++ |+.|++++|..+..+|..+.....+..+.+.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 456777777666655566667788899999999888888888888888 9999999998888888765444333333332
Q ss_pred CCC---CCCCCCCCCcccEeeccccccccccccc--------ccccc--c------------------------------
Q 043856 153 SSS---SSSSVTAFPKLKSLEIKELDLLEEWNYR--------ITRKE--N------------------------------ 189 (275)
Q Consensus 153 ~~~---~~~~l~~l~~L~~L~l~~~~~l~~l~~~--------i~~~~--~------------------------------ 189 (275)
.+. ..+....+++|+.|.+.+|..++.++.. +.... .
T Consensus 690 ~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 690 RCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence 211 1111125667888888777665544320 00000 0
Q ss_pred ----cCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc----ccccchh
Q 043856 190 ----ISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDY 261 (275)
Q Consensus 190 ----~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp~~ 261 (275)
...+++|+.|++++|+.+..+|..++++++|+.|+|++|+.++.+|. .+ .+++|+.|+++ ++.+|..
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCcccccccc
Confidence 00124566666666666666777777777777777777777776665 22 46677777775 4444432
Q ss_pred hcCCCCccEEEec
Q 043856 262 LLRTTMLQELSIS 274 (275)
Q Consensus 262 l~~L~~L~~L~l~ 274 (275)
.++|+.|+++
T Consensus 845 ---~~nL~~L~Ls 854 (1153)
T PLN03210 845 ---STNISDLNLS 854 (1153)
T ss_pred ---ccccCEeECC
Confidence 3466666664
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-15 Score=147.98 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=49.4
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c-cccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L-KVLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l-~~lp~~l~~L~~ 267 (275)
.+++|+.|++++|.....+|..+.++++|+.|++.+|.....+|. .+..+++|+.|+++ + ..+|..++.+++
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 357 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV----ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh----hHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence 456666666666632234565566666666666666654444444 45567777777775 3 356777777777
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.|+++
T Consensus 358 L~~L~Ls 364 (968)
T PLN00113 358 LTVLDLS 364 (968)
T ss_pred CcEEECC
Confidence 8777775
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=144.96 Aligned_cols=198 Identities=18% Similarity=0.193 Sum_probs=131.9
Q ss_pred HHHhcCCCCCCCeEEecccCCcc-cccccC-CCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNI-LPKWLT-SLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~-~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
++..+..+++|+.|++++|.... +|..+. .+++|++|++++|+....+|. +.++ |++|+++++.....+|..+...
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcC
Confidence 46677888999999999887653 777665 889999999998765555553 5677 8888888776434555554333
Q ss_pred ccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCC
Q 043856 144 EEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTA 219 (275)
Q Consensus 144 ~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 219 (275)
..+..+.++. ......+..+++|+.|++.++.-...++.. +..+++|+.|++.+|.-...+|..++++++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE------LGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH------HcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 3332222221 112233556677777777665433333322 225778888888877433457777788888
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc----ccccchhhcCCCCccEEEecC
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|++|++++|.....+|. .+..+++|++|+++ .+.+|..+.++++|+.|++++
T Consensus 238 L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred CCEEECcCceeccccCh----hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 88888887755455665 56678888888885 346777888888888888753
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-14 Score=129.46 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
||..+..+..|..|+++.++....|..+..-.++-.|+|++ +.+..+|. +-+|. |-+|+++++. ++.+|..
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ 168 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ 168 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch-hhhcCHH
Confidence 44444445555555555555444555555555555555555 44555553 22344 5556665432 5555543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-14 Score=110.14 Aligned_cols=161 Identities=29% Similarity=0.387 Sum_probs=100.4
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
+..+.+...|.++.+....+|..|..+.+|+.|++++ +.++.+| .+..+| |+.|++. ++.+..+|.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvg-mnrl~~lprg--------- 97 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVG-MNRLNILPRG--------- 97 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecc-hhhhhcCccc---------
Confidence 3445566677777776666777777777777777776 5556565 366677 7777776 4556666665
Q ss_pred CCCCCCCCCCCCCCCCcccEeecccccccc-ccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLE-EWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~-~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
++.||.|+.|++....--+ .+|. ++..+..|+.|+++++ ..+-+|..++++++|+.|.+++
T Consensus 98 -----------fgs~p~levldltynnl~e~~lpg------nff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 98 -----------FGSFPALEVLDLTYNNLNENSLPG------NFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred -----------cCCCchhhhhhccccccccccCCc------chhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc
Confidence 3467777777776432111 2221 2234566777777766 5666777777777777777776
Q ss_pred CCCCccCCccccccCCCCCcccceecc---ccccchhhcCC
Q 043856 228 CENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRT 265 (275)
Q Consensus 228 c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L 265 (275)
+ .+-++|. .++.+..|+.|.|. +..+|..++++
T Consensus 160 n-dll~lpk----eig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 160 N-DLLSLPK----EIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred C-chhhCcH----HHHHHHHHHHHhcccceeeecChhhhhh
Confidence 5 4445666 56667777777764 66666655544
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-13 Score=123.33 Aligned_cols=207 Identities=20% Similarity=0.277 Sum_probs=122.4
Q ss_pred hhhHHHHHHhcCCCCCCCeEEecccCCcccccccC-CCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccc------
Q 043856 61 NEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLT-SLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLK------ 131 (275)
Q Consensus 61 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~------ 131 (275)
.+...++|..+..-+++-.|++++++..++|..+. +++-|-.|+|+. +.+..+|+ +..|. |+.|.+++++
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 35566777777777777777777777766776554 666666667766 45555553 33344 4444444332
Q ss_pred -------------------cccccCccccccccccCCCCCCC---CCCCCCCCCCcccEeeccccccccccccccc----
Q 043856 132 -------------------SVKRVGNEFLGIEEISEDDPSSS---SSSSSVTAFPKLKSLEIKELDLLEEWNYRIT---- 185 (275)
Q Consensus 132 -------------------~l~~l~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~---- 185 (275)
.+..+|.+.-+...++.+.+++. .....+-.+++|+.|.+++.. ++++...++
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWEN 269 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhh
Confidence 12223333222222222222211 122344566777777776532 222211000
Q ss_pred -------------cccccCCCCcccEEeEccCcccC--cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccc
Q 043856 186 -------------RKENISIMPRLSSLKVGSCNKLK--ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSS 250 (275)
Q Consensus 186 -------------~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~ 250 (275)
-+...+.+++|+.|++.++ ++. .+|.+++.+.+|+.+...++ .++-.|. .+.++++|+.
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN-~LElVPE----glcRC~kL~k 343 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE----GLCRCVKLQK 343 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhcc-ccccCch----hhhhhHHHHH
Confidence 0112234566666666655 443 47777777777777766553 6666676 6888999999
Q ss_pred eecc---ccccchhhcCCCCccEEEecC
Q 043856 251 LRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 251 L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|.++ +-.+|++|.-|+.|+.|++.+
T Consensus 344 L~L~~NrLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 344 LKLDHNRLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred hcccccceeechhhhhhcCCcceeeccC
Confidence 9996 778999999999999999863
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-13 Score=103.97 Aligned_cols=145 Identities=25% Similarity=0.396 Sum_probs=119.8
Q ss_pred CCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccc
Q 043856 96 SLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKE 173 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 173 (275)
.+++.+.|.++. +++..+| .+..+. |+.|+++++ .++.+|.. +..+|.|+.|.+.
T Consensus 31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~--------------------issl~klr~lnvg- 87 (264)
T KOG0617|consen 31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS--------------------ISSLPKLRILNVG- 87 (264)
T ss_pred chhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChh--------------------hhhchhhhheecc-
Confidence 778888899999 5555554 688888 999999965 48899876 6689999999886
Q ss_pred cccccccccccccccccCCCCcccEEeEccCcccC--cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccce
Q 043856 174 LDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK--ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSL 251 (275)
Q Consensus 174 ~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L 251 (275)
+..+..+|.. ++.||.|+.|++.++ ++. ++|..+..++.|+.|.++++ .++.+|. .++.+++|+.|
T Consensus 88 mnrl~~lprg------fgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dn-dfe~lp~----dvg~lt~lqil 155 (264)
T KOG0617|consen 88 MNRLNILPRG------FGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDN-DFEILPP----DVGKLTNLQIL 155 (264)
T ss_pred hhhhhcCccc------cCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCC-CcccCCh----hhhhhcceeEE
Confidence 4556666653 338999999999997 564 38988888999999999886 7888888 78899999999
Q ss_pred ecc---ccccchhhcCCCCccEEEecC
Q 043856 252 RIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 252 ~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.++ +-++|..++.|+.|++|.|.+
T Consensus 156 ~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 156 SLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred eeccCchhhCcHHHHHHHHHHHHhccc
Confidence 986 788999999999999998864
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.1e-14 Score=120.50 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCCcccEEeEccCcccCcCccccC-CCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLL-QTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~ 267 (275)
.+..|+.|.++.+ .++.+|+.++ ++++|..|+++++ ++++.|. .+.-+.+|.+|+++ ++.+|..+|++ .
T Consensus 226 gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd----e~clLrsL~rLDlSNN~is~Lp~sLgnl-h 298 (565)
T KOG0472|consen 226 GCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD----EICLLRSLERLDLSNNDISSLPYSLGNL-H 298 (565)
T ss_pred ccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccccCch----HHHHhhhhhhhcccCCccccCCcccccc-e
Confidence 3455666665554 4555665554 6788888888875 6777777 66677888888886 88888888888 7
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.|-+.
T Consensus 299 L~~L~le 305 (565)
T KOG0472|consen 299 LKFLALE 305 (565)
T ss_pred eeehhhc
Confidence 7776553
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-13 Score=114.69 Aligned_cols=196 Identities=23% Similarity=0.279 Sum_probs=80.2
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
..+|.+++.+..++.|+++.+....+|..++.+.+|+.++++.+......+.++.+- |..++..++ .+..+|.+++..
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~ 159 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNL 159 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHH
Confidence 344555555555555555555444455555555555555555533322223344444 444444322 244444333222
Q ss_pred ccccCCCCC---CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCc
Q 043856 144 EEISEDDPS---SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTAL 220 (275)
Q Consensus 144 ~~~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 220 (275)
..+..+... .....+....+..|++|+... ..++.+|..++ .+.+|..|++..+ ++..+| +++.+..|
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg------~l~~L~~LyL~~N-ki~~lP-ef~gcs~L 230 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELG------GLESLELLYLRRN-KIRFLP-EFPGCSLL 230 (565)
T ss_pred HHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhc------chhhhHHHHhhhc-ccccCC-CCCccHHH
Confidence 111110000 000000011233444444322 12334443222 3444555555444 444454 34445555
Q ss_pred cEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
++|++..+ .++.+|.+ ...++++|..|+++ ++++|..+..+.+|.+|++|
T Consensus 231 ~Elh~g~N-~i~~lpae---~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 231 KELHVGEN-QIEMLPAE---HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred HHHHhccc-HHHhhHHH---HhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 55554332 34444431 12244555555553 55555555555555555544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=102.93 Aligned_cols=190 Identities=19% Similarity=0.218 Sum_probs=106.2
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcccccccCC-----------------CCCCcEEeeecCCCCCcCCCCCCcc-cc
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTS-----------------LTNLRDLKLVFCENCEHLPPLGKLP-LE 123 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~-----------------l~~L~~L~L~~c~~~~~lp~l~~L~-L~ 123 (275)
+.+..+|.. +++|++|++++|....+|....+ +++|+.|++++ +.+..+|. .++ |+
T Consensus 232 N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~-N~Lt~LP~--~p~~L~ 305 (788)
T PRK15387 232 NNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG-NQLTSLPV--LPPGLQ 305 (788)
T ss_pred CcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcC-Cccccccc--cccccc
Confidence 334445663 46778888887777666653221 13455556655 34455553 235 89
Q ss_pred eeeccccccccccCccccccccccCCCCCCCCCCCCCCCC-CcccEeeccccccccccccc---c-----ccc--ccc-C
Q 043856 124 KLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAF-PKLKSLEIKELDLLEEWNYR---I-----TRK--ENI-S 191 (275)
Q Consensus 124 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~---i-----~~~--~~~-~ 191 (275)
.|+++++ .+..+|.... .+..+.+..... ..+..+ ++|+.|+++++ .+..+|.. + ... ..+ .
T Consensus 306 ~LdLS~N-~L~~Lp~lp~---~L~~L~Ls~N~L-~~LP~lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 306 ELSVSDN-QLASLPALPS---ELCKLWAYNNQL-TSLPTLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred eeECCCC-ccccCCCCcc---cccccccccCcc-ccccccccccceEecCCC-ccCCCCCCCcccceehhhccccccCcc
Confidence 9999876 4666654211 111111111000 011112 26777777653 33333320 0 000 000 0
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCc
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTML 268 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L 268 (275)
..++|+.|++++| +++.+|.. .++|+.|++++| .+..+|. . ..+|+.|+++ ++.+|..+.++++|
T Consensus 380 l~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N-~LssIP~----l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L 447 (788)
T PRK15387 380 LPSGLKELIVSGN-RLTSLPVL---PSELKELMVSGN-RLTSLPM----L---PSGLLSLSVYRNQLTRLPESLIHLSSE 447 (788)
T ss_pred cccccceEEecCC-cccCCCCc---ccCCCEEEccCC-cCCCCCc----c---hhhhhhhhhccCcccccChHHhhccCC
Confidence 1246777777776 56667653 357788888776 4666664 1 3467788885 88999999999999
Q ss_pred cEEEecC
Q 043856 269 QELSISE 275 (275)
Q Consensus 269 ~~L~l~~ 275 (275)
+.|++++
T Consensus 448 ~~LdLs~ 454 (788)
T PRK15387 448 TTVNLEG 454 (788)
T ss_pred CeEECCC
Confidence 9999874
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-10 Score=103.37 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=53.0
Q ss_pred HHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
++.+..+++|+.+++..|....+|....-..+|+.|+|.. +.+.++.. +..+| |+.|+++.+ .+..++..
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~ 167 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRN-LISEIPKP 167 (873)
T ss_pred HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhhc-hhhcccCC
Confidence 6677788999999998888777888777777899999988 55555542 66677 888888855 36666654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-11 Score=114.88 Aligned_cols=108 Identities=26% Similarity=0.367 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCcc
Q 043856 154 SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
..+++.+.+|++||.|++++. .+..++. .....++.|+.|.++++ +++.+|..+.+++.|++|...++ .+..
T Consensus 373 d~c~p~l~~~~hLKVLhLsyN-rL~~fpa-----s~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~ 444 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYN-RLNSFPA-----SKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLS 444 (1081)
T ss_pred ccchhhhccccceeeeeeccc-ccccCCH-----HHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceee
Confidence 345666777888888888753 3444443 12225777788888887 67778877777777777765443 5556
Q ss_pred CCccccccCCCCCcccceecc---cc--ccchhhcCCCCccEEEecC
Q 043856 234 LPIPEDRRTTDIPRLSSLRIG---LK--VLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~---l~--~lp~~l~~L~~L~~L~l~~ 275 (275)
+|. +..++.|+.++++ ++ .+|..... ++|++|++++
T Consensus 445 fPe-----~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSG 485 (1081)
T KOG0618|consen 445 FPE-----LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSG 485 (1081)
T ss_pred chh-----hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccC
Confidence 664 5678888888886 22 33433322 6888888764
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=105.17 Aligned_cols=187 Identities=20% Similarity=0.282 Sum_probs=97.7
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~~~~~ 142 (275)
..+|..+ +++|+.|++++|....+|..+. ++|++|++++| .+..+|. .++ |+.|++++|. +..+|..+..
T Consensus 191 tsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~--~l~~~L~~L~Ls~N~-L~~LP~~l~s 262 (754)
T PRK15370 191 TTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPA--TLPDTIQEMELSINR-ITELPERLPS 262 (754)
T ss_pred CcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCCh--hhhccccEEECcCCc-cCcCChhHhC
Confidence 3455554 2478899998888777887654 58888888874 4566664 233 7888887664 5666644321
Q ss_pred cccccCCCCCCCCCCCCC-CCCCcccEeeccccccccccccccc---------ccc----ccCCCCcccEEeEccCcccC
Q 043856 143 IEEISEDDPSSSSSSSSV-TAFPKLKSLEIKELDLLEEWNYRIT---------RKE----NISIMPRLSSLKVGSCNKLK 208 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~i~---------~~~----~~~~l~~L~~L~l~~c~~l~ 208 (275)
.+..+.++........ .-+++|+.|+++++ ++..++..+. ... .....++|+.|.+.+| .++
T Consensus 263 --~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt 338 (754)
T PRK15370 263 --ALQSLDLFHNKISCLPENLPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALT 338 (754)
T ss_pred --CCCEEECcCCccCccccccCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccc
Confidence 1111111100000000 01236777777654 3333332100 000 0002345666666666 466
Q ss_pred cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 209 ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 209 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
.+|..+. ++|+.|++++| .+..+|. .+ .++|++|+++ +..+|..+. ++|+.|+++
T Consensus 339 ~LP~~l~--~sL~~L~Ls~N-~L~~LP~----~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 339 SLPASLP--PELQVLDVSKN-QITVLPE----TL--PPTITTLDVSRNALTNLPENLP--AALQIMQAS 396 (754)
T ss_pred cCChhhc--CcccEEECCCC-CCCcCCh----hh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhc
Confidence 6665443 56777777665 3445554 22 2566777774 566665543 245544443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-10 Score=103.65 Aligned_cols=203 Identities=21% Similarity=0.304 Sum_probs=108.0
Q ss_pred hhHHHHHHhc-CCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeecccccccccc
Q 043856 62 EKDEQLLEAL-QPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRV 136 (275)
Q Consensus 62 ~~~~~l~~~l-~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l 136 (275)
+.+.+++..- ..-.++++|++++|....+ -..+..|.+|..|.|+. +.++.+|. +.+|| |+.|++..+. ++.+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~-iriv 236 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR-IRIV 236 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc-eeee
Confidence 3444554433 3336899999999887663 34456778888888888 66777774 55677 8888776443 3333
Q ss_pred -CccccccccccCCCCC------------------------C----CCCCCCCCCCCcccEeeccccccccccccccccc
Q 043856 137 -GNEFLGIEEISEDDPS------------------------S----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRK 187 (275)
Q Consensus 137 -~~~~~~~~~~~~~~~~------------------------~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~ 187 (275)
...|.+...+.++.++ . ....-.+.+++.|+.|+++... +..+..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~----- 310 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHI----- 310 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeec-----
Confidence 3333333333332221 0 0111223445556666655421 111110
Q ss_pred cccCCCCcccEEeEccCcccCcCccc-cC------------------------CCCCccEEEEecCCCCccCCccccccC
Q 043856 188 ENISIMPRLSSLKVGSCNKLKALPDY-LL------------------------QTTALQELSIYSCENLEELPIPEDRRT 242 (275)
Q Consensus 188 ~~~~~l~~L~~L~l~~c~~l~~lp~~-l~------------------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 242 (275)
..-...++|+.|+++++ ++++++.+ +. .+.+|++|+++.+. +.-........+
T Consensus 311 d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f 388 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAF 388 (873)
T ss_pred chhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhh
Confidence 00013567777777665 56655432 12 23445555554432 111111111234
Q ss_pred CCCCcccceecc---ccccch-hhcCCCCccEEEec
Q 043856 243 TDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSIS 274 (275)
Q Consensus 243 ~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~ 274 (275)
..|++|++|.+. ++.+|. ++..+.+|+.|++.
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 557777777774 777774 66777778777764
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-09 Score=102.73 Aligned_cols=175 Identities=20% Similarity=0.238 Sum_probs=100.2
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
.+...|+++++....+|..+. ++|+.|++++ +.+..+|.. ..+ |+.|++++|. ++.+|..+.. .+..+.++.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~-N~LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~~l~~--~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDN-NELKSLPEN-LQGNIKTLYANSNQ-LTSIPATLPD--TIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecC-CCCCcCChh-hccCCCEEECCCCc-cccCChhhhc--cccEEECcC
Confidence 467899999887777887664 5899999998 567777752 235 9999999774 7788764321 111111111
Q ss_pred CCCCCC-CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccC-----------------
Q 043856 154 SSSSSS-VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLL----------------- 215 (275)
Q Consensus 154 ~~~~~~-l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~----------------- 215 (275)
...... .....+|+.|++++ .++..++.. .+++|+.|++++| +++.+|..+.
T Consensus 251 N~L~~LP~~l~s~L~~L~Ls~-N~L~~LP~~--------l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 251 NRITELPERLPSALQSLDLFH-NKISCLPEN--------LPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALP 320 (754)
T ss_pred CccCcCChhHhCCCCEEECcC-CccCccccc--------cCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCC
Confidence 100000 00123678888874 345555431 1346777777776 5666654332
Q ss_pred --CCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 216 --QTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 216 --~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
-.++|+.|++.+| .+..+|. .+ .++|+.|+++ +..+|..+. ++|+.|+|++
T Consensus 321 ~~l~~sL~~L~Ls~N-~Lt~LP~----~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~ 376 (754)
T PRK15370 321 ETLPPGLKTLEAGEN-ALTSLPA----SL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSR 376 (754)
T ss_pred ccccccceeccccCC-ccccCCh----hh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCC
Confidence 0134455554444 2333443 11 2567777775 666666553 5677777753
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=98.75 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=29.1
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccC
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
+|+.|.+.+|....+|. ..++|++|++++ +.++.+|.+ .+ |+.|+++++. +..+|
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP~l--p~sL~~L~Ls~N~-L~~Lp 278 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLPVL--PPGLLELSIFSNP-LTHLP 278 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecC-CccCcccCc--ccccceeeccCCc-hhhhh
Confidence 55666666555554553 245666666666 345555531 23 6666665543 44443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-09 Score=90.90 Aligned_cols=68 Identities=29% Similarity=0.209 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcc-cccccCCC---CCCcEEeeecCCCCC-cCC----CCCCc-c-cceeeccccc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSL---TNLRDLKLVFCENCE-HLP----PLGKL-P-LEKLELRDLK 131 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l---~~L~~L~L~~c~~~~-~lp----~l~~L-~-L~~L~l~~~~ 131 (275)
...++..+..+++|++|++++|.... .+..+..+ ++|++|++++|.... ..+ .+..+ + |+.|++++|.
T Consensus 70 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 70 LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 34566677777788888887776542 33344333 348888888764321 111 13345 5 7888887765
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-08 Score=89.25 Aligned_cols=67 Identities=22% Similarity=0.186 Sum_probs=47.5
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcc-------cccccCCCCCCcEEeeecCCCCCcCCC-----CCCcc-cceeecccc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNI-------LPKWLTSLTNLRDLKLVFCENCEHLPP-----LGKLP-LEKLELRDL 130 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~-------lp~~l~~l~~L~~L~L~~c~~~~~lp~-----l~~L~-L~~L~l~~~ 130 (275)
...+++.+...++|++|+++++.... ++..+..+++|++|++++|......+. ... + |++|++++|
T Consensus 40 ~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~ 118 (319)
T cd00116 40 AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN 118 (319)
T ss_pred HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC
Confidence 45678888888899999998765441 344566788999999999765432221 123 6 899999877
Q ss_pred c
Q 043856 131 K 131 (275)
Q Consensus 131 ~ 131 (275)
.
T Consensus 119 ~ 119 (319)
T cd00116 119 G 119 (319)
T ss_pred c
Confidence 5
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-08 Score=79.29 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=42.7
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccC-CCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLT-SLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
+.++... .+.++++|+++++....+ ..++ .+.+|+.|++++ +.++.+..+..++ |+.|+++++. ++.++..+
T Consensus 10 ~~~~~~~-n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l-- 83 (175)
T PF14580_consen 10 EQIAQYN-NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNR-ISSISEGL-- 83 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS----S-CHHH--
T ss_pred ccccccc-cccccccccccccccccc-cchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCC-CCccccch--
Confidence 3344433 344789999999987754 4566 688999999999 6777788888888 9999998664 76665321
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc----cccCCCC
Q 043856 143 IEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP----DYLLQTT 218 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp----~~l~~l~ 218 (275)
...+|+|+.|++.+.. +..+.. ......+|+|+.|++.++|- ..-+ .-+..+|
T Consensus 84 -----------------~~~lp~L~~L~L~~N~-I~~l~~----l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 84 -----------------DKNLPNLQELYLSNNK-ISDLNE----LEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLP 140 (175)
T ss_dssp -----------------HHH-TT--EEE-TTS----SCCC----CGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-T
T ss_pred -----------------HHhCCcCCEEECcCCc-CCChHH----hHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcC
Confidence 1257888888887532 322221 11222578888888888763 3222 1244577
Q ss_pred CccEEEEec
Q 043856 219 ALQELSIYS 227 (275)
Q Consensus 219 ~L~~L~l~~ 227 (275)
+|+.|+-..
T Consensus 141 ~Lk~LD~~~ 149 (175)
T PF14580_consen 141 SLKVLDGQD 149 (175)
T ss_dssp T-SEETTEE
T ss_pred hhheeCCEE
Confidence 777776443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-09 Score=98.30 Aligned_cols=76 Identities=24% Similarity=0.285 Sum_probs=53.3
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcccceeeccccccccccCcc
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLPLEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~L~~L~l~~~~~l~~l~~~ 139 (275)
+...++|+.+..+..|..+.++.|....+|..+..+..|.+|+|+. +.+..+| .+..|||+.|-++++ +++.+|.+
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sNN-kl~~lp~~ 161 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSNN-KLTSLPEE 161 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEecC-ccccCCcc
Confidence 3445677777777777777777666666777788888888888887 4555555 366667777777754 47777766
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-08 Score=89.99 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=47.5
Q ss_pred CCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCCCCccEEEEecCC--CCccCCc
Q 043856 161 TAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQTTALQELSIYSCE--NLEELPI 236 (275)
Q Consensus 161 ~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~--~l~~l~~ 236 (275)
..||+|+.|++.....+..... ....+..|+.|+|++++ +..++ ...+.+|.|+.|.++.|. .+...+.
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~------~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKAT------STKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred HhCCcHHHhhhhcccccceecc------hhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCc
Confidence 3567777777765532111110 11145677788887774 44444 346778888888777763 2222222
Q ss_pred cccccCCCCCcccceecc
Q 043856 237 PEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~ 254 (275)
+.......+++|++|++.
T Consensus 292 ~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cchhhhcccccceeeecc
Confidence 112223457888888885
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.8e-08 Score=86.50 Aligned_cols=169 Identities=24% Similarity=0.342 Sum_probs=100.3
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCC-CCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLT-NLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEI 146 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~ 146 (275)
.+.+.+.++.|.+.++....+|.....+. +|+.|++++ +.+..+| .++.++ |+.|.+++++ +..++..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~------- 181 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL------- 181 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhhh-------
Confidence 34445778888888877777887777774 888888888 5666664 677788 8888888765 6666643
Q ss_pred cCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEe
Q 043856 147 SEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIY 226 (275)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 226 (275)
....++|+.|++++. .+..++..+. ....|+.|.+.+++ +..++..+.++..+..+.+.
T Consensus 182 -------------~~~~~~L~~L~ls~N-~i~~l~~~~~------~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 182 -------------LSNLSNLNNLDLSGN-KISDLPPEIE------LLSALEELDLSNNS-IIELLSSLSNLKNLSGLELS 240 (394)
T ss_pred -------------hhhhhhhhheeccCC-ccccCchhhh------hhhhhhhhhhcCCc-ceecchhhhhcccccccccC
Confidence 224566667766653 2333332110 22336666666552 33344455555555555544
Q ss_pred cCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 227 SCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 227 ~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
++ .+..++. .+..++++++|+++ +..++. ++.+.+|+.|+++
T Consensus 241 ~n-~~~~~~~----~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 241 NN-KLEDLPE----SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLS 285 (394)
T ss_pred Cc-eeeeccc----hhccccccceecccccccccccc-ccccCccCEEecc
Confidence 33 2222222 34456666666664 555543 5666666666654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-08 Score=96.71 Aligned_cols=197 Identities=20% Similarity=0.247 Sum_probs=116.8
Q ss_pred hhhHHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCc
Q 043856 61 NEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 61 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~ 138 (275)
.+.+..+|.+...+.+|++|.|.++....+|..+..+.+|++|+++++++ ..+| .+..+. +..+..+++..+..++.
T Consensus 77 ~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 77 RNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred hhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence 46677888888899999999998888877999999999999999999544 4444 333333 44444443322222221
Q ss_pred cc-------------------cccccccCCCCCC-CCCCCCCCCCCcccEe--------------------ecccccccc
Q 043856 139 EF-------------------LGIEEISEDDPSS-SSSSSSVTAFPKLKSL--------------------EIKELDLLE 178 (275)
Q Consensus 139 ~~-------------------~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L--------------------~l~~~~~l~ 178 (275)
.+ ..... .+.+.. ...-..+..+++|+.| +...++-.+
T Consensus 156 ~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 156 TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT 233 (1081)
T ss_pred ccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCccee
Confidence 11 00000 000000 0000112223333333 322222111
Q ss_pred ccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c
Q 043856 179 EWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L 255 (275)
Q Consensus 179 ~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l 255 (275)
.. ....-.+|++++++.+ +++.+|.+++.+.+|+.|.+..+ .+..+|. ++..+.+|++|.+. +
T Consensus 234 ~~--------~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~----ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 234 LD--------VHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHN-RLVALPL----RISRITSLVSLSAAYNEL 299 (1081)
T ss_pred ec--------cccccccceeeecchh-hhhcchHHHHhcccceEecccch-hHHhhHH----HHhhhhhHHHHHhhhhhh
Confidence 00 0112346788888776 67788888888888888888765 5567776 66677788887774 7
Q ss_pred cccchhhcCCCCccEEEec
Q 043856 256 KVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 256 ~~lp~~l~~L~~L~~L~l~ 274 (275)
+.+|...+.+++|+.|++.
T Consensus 300 ~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred hhCCCcccccceeeeeeeh
Confidence 7777777778888888764
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.1e-07 Score=80.60 Aligned_cols=140 Identities=24% Similarity=0.369 Sum_probs=85.0
Q ss_pred HHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCcccccccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGNEFLGIEE 145 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~~~~~~~~ 145 (275)
...+..+.++++|++++|....+|. --++|++|.+++|..+..+|. .+| |++|.+++|..+..+|..+....
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sLP~sLe~L~- 118 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGLPESVRSLE- 118 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCcccccccccccceEE-
Confidence 3335556899999999997666882 224699999999999888884 356 99999999977877775432111
Q ss_pred ccCCCCCCCCCCCCCCCCC-cccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEE
Q 043856 146 ISEDDPSSSSSSSSVTAFP-KLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELS 224 (275)
Q Consensus 146 ~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 224 (275)
+. ...+..+..+| +|+.|.+.++....... + . ..-.++|+.|.+.+|..+ .+|..+. .+|+.|.
T Consensus 119 -----L~-~n~~~~L~~LPssLk~L~I~~~n~~~~~~--l--p--~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 119 -----IK-GSATDSIKNVPNGLTSLSINSYNPENQAR--I--D--NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred -----eC-CCCCcccccCcchHhheeccccccccccc--c--c--cccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 00 01111233443 46666654332111111 0 0 001257888888888544 3555444 5788888
Q ss_pred EecC
Q 043856 225 IYSC 228 (275)
Q Consensus 225 l~~c 228 (275)
+..+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-07 Score=74.19 Aligned_cols=128 Identities=22% Similarity=0.285 Sum_probs=44.0
Q ss_pred CCCCCcEEeeecCCCCCcCCCCC-Ccc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccc
Q 043856 96 SLTNLRDLKLVFCENCEHLPPLG-KLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKE 173 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~~~lp~l~-~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 173 (275)
+..+++.|+|.+ +.+..+..++ .+. |+.|+++++. ++.++. +..+++|+.|++++
T Consensus 17 n~~~~~~L~L~~-n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~---------------------l~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQISTIENLGATLDKLEVLDLSNNQ-ITKLEG---------------------LPGLPRLKTLDLSN 73 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT-------------------------TT--EEE--S
T ss_pred cccccccccccc-cccccccchhhhhcCCCEEECCCCC-CccccC---------------------ccChhhhhhcccCC
Confidence 556789999999 6677777776 477 9999999775 766642 44688999999986
Q ss_pred cccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccce
Q 043856 174 LDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSL 251 (275)
Q Consensus 174 ~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L 251 (275)
.. +..+...+ ...+|+|+.|+++++ ++..+- ..+..+++|+.|++.+||--.. +.-...-+..+|+|+.|
T Consensus 74 N~-I~~i~~~l-----~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 74 NR-ISSISEGL-----DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp S----S-CHHH-----HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEE
T ss_pred CC-CCccccch-----HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhhee
Confidence 43 33332100 014899999999887 676642 3456789999999998874322 11011124457888888
Q ss_pred ecc
Q 043856 252 RIG 254 (275)
Q Consensus 252 ~l~ 254 (275)
+-.
T Consensus 146 D~~ 148 (175)
T PF14580_consen 146 DGQ 148 (175)
T ss_dssp TTE
T ss_pred CCE
Confidence 753
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-07 Score=90.00 Aligned_cols=65 Identities=26% Similarity=0.266 Sum_probs=34.8
Q ss_pred cCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeecccccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRV 136 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l 136 (275)
+..++.|+.|++++|.... +|..|+.|-+|++|++++ ..+..+|. +++|. |.+|++..+..+..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccc
Confidence 4445566666666544333 666666666666666665 34445552 55555 555555544433333
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-07 Score=85.40 Aligned_cols=144 Identities=21% Similarity=0.240 Sum_probs=110.2
Q ss_pred chhhHHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccC
Q 043856 60 KNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 60 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
+.+.+..+|+.++.+..|.+|+++.++...+|..+..|+ |+.|.+++ ++++.+| .++.++ |..|+.+.|. +..+|
T Consensus 106 y~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slp 182 (722)
T KOG0532|consen 106 YHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLP 182 (722)
T ss_pred HhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhch
Confidence 445666789999999999999999999888998886554 89999988 7788887 488667 9999999664 88888
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCC
Q 043856 138 NEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQT 217 (275)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l 217 (275)
.. ++.+.+|+.|.+.... +..++... ..-.|..|+++.+ ++..||..+.+|
T Consensus 183 sq--------------------l~~l~slr~l~vrRn~-l~~lp~El-------~~LpLi~lDfScN-kis~iPv~fr~m 233 (722)
T KOG0532|consen 183 SQ--------------------LGYLTSLRDLNVRRNH-LEDLPEEL-------CSLPLIRLDFSCN-KISYLPVDFRKM 233 (722)
T ss_pred HH--------------------hhhHHHHHHHHHhhhh-hhhCCHHH-------hCCceeeeecccC-ceeecchhhhhh
Confidence 77 5567788888887643 44555322 1235778888654 899999999999
Q ss_pred CCccEEEEecCCCCccCCc
Q 043856 218 TALQELSIYSCENLEELPI 236 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~ 236 (275)
+.|++|.+.++| +++-|.
T Consensus 234 ~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 234 RHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred hhheeeeeccCC-CCCChH
Confidence 999999988765 444443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-07 Score=81.22 Aligned_cols=174 Identities=19% Similarity=0.222 Sum_probs=112.1
Q ss_pred CCCCCCCeEEecccCCcccc--cccCCCCCCcEEeeecCCCCCcCC----CCCCcc-cceeeccccccccccCccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNILP--KWLTSLTNLRDLKLVFCENCEHLP----PLGKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~L~~c~~~~~lp----~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
..+.+|+...+.++.....+ .....|++++.|+|+.+ .+..+. ...+|| |+.|+++.+. +.....+ .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s-~--- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISS-N--- 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCccc-c---
Confidence 35678889999887654333 24558999999999995 333222 245788 9999999764 3221111 0
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccc-cccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEE
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLL-EEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQEL 223 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 223 (275)
....+++|+.|.++.|.-- ..+.. ....||+|+.|++..+..+...-.....+..|+.|
T Consensus 192 --------------~~~~l~~lK~L~l~~CGls~k~V~~------~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 192 --------------TTLLLSHLKQLVLNSCGLSWKDVQW------ILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred --------------chhhhhhhheEEeccCCCCHHHHHH------HHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 0225889999999998632 11111 12269999999999985333222223346889999
Q ss_pred EEecCCCCccCCccccccCCCCCcccceecc---cccc--chh-----hcCCCCccEEEec
Q 043856 224 SIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL--PDY-----LLRTTMLQELSIS 274 (275)
Q Consensus 224 ~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l--p~~-----l~~L~~L~~L~l~ 274 (275)
+|++++.+. ++. ....+.+|.|+.|+++ +.++ |++ ...+++|++|++.
T Consensus 252 dLs~N~li~-~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 252 DLSNNNLID-FDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cccCCcccc-ccc--ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence 999986543 331 1246789999999996 3322 332 2457788888875
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7e-07 Score=80.67 Aligned_cols=76 Identities=26% Similarity=0.313 Sum_probs=60.4
Q ss_pred hhHHHHHHhcCCCC-CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCC-Ccc-cceeeccccccccccCc
Q 043856 62 EKDEQLLEALQPPL-NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLG-KLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 62 ~~~~~l~~~l~~l~-~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~-~L~-L~~L~l~~~~~l~~l~~ 138 (275)
..+..++....... +|+.|+++++....+|..+..+++|+.|++.+ +.+..+|... .++ |+.|+++++. +..+|.
T Consensus 126 n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~ 203 (394)
T COG4886 126 NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPP 203 (394)
T ss_pred cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccCCc-cccCch
Confidence 44455677777775 99999999998888888899999999999999 5666777654 777 9999999764 777775
Q ss_pred c
Q 043856 139 E 139 (275)
Q Consensus 139 ~ 139 (275)
.
T Consensus 204 ~ 204 (394)
T COG4886 204 E 204 (394)
T ss_pred h
Confidence 4
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-07 Score=80.74 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=38.6
Q ss_pred hhHHHHHH-hcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC
Q 043856 62 EKDEQLLE-ALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP 116 (275)
Q Consensus 62 ~~~~~l~~-~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~ 116 (275)
+.+..||+ +++++++||.|+++.|.... -|..+..+.+|.+|.+.++++++.+|.
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 34445543 46777888888888777655 577777778887777777777777774
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-05 Score=72.35 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=14.1
Q ss_pred CCCeEEecccCCcc-cccccCCCCCCcEEeeecCC
Q 043856 76 NVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCE 109 (275)
Q Consensus 76 ~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~ 109 (275)
+|+.|.+++|.... +|..+ .++|++|.+++|.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcc
Confidence 45555555443332 33322 1345555555543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-07 Score=77.85 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=22.0
Q ss_pred CCCCCeEEecccCCcc---------cccccCCCCCCcEEeeecC
Q 043856 74 PLNVEKLWIIFYGGNI---------LPKWLTSLTNLRDLKLVFC 108 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~---------lp~~l~~l~~L~~L~L~~c 108 (275)
+.+|.+|.+++..+-- +|-.+.-|.+|..+.++.|
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~ 224 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL 224 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc
Confidence 5677888877654211 3333446778888888876
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.4e-06 Score=52.96 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=33.1
Q ss_pred CcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecC
Q 043856 164 PKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSC 228 (275)
Q Consensus 164 ~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 228 (275)
|+|+.|++.++ .+..++. +.+..+++|+.|++++| +++.+|. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~-----~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-----DSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECT-----TTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCH-----HHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 45666666654 4444442 12235666666666655 5665543 4466666666666665
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.7e-06 Score=82.76 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=51.1
Q ss_pred CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCcccccc
Q 043856 162 AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
.+|.|+.|+++++..+..+|.+|+ .+-+|++|++++. .++.+|.+++++..|.+|++..+..+..++. .
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~------~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~----i 637 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIG------ELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPG----I 637 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHh------hhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccc----h
Confidence 466666666666666666665443 4666666766665 5666777777777777776666655555543 3
Q ss_pred CCCCCcccceecc
Q 043856 242 TTDIPRLSSLRIG 254 (275)
Q Consensus 242 ~~~l~~L~~L~l~ 254 (275)
...+++|++|.+.
T Consensus 638 ~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 638 LLELQSLRVLRLP 650 (889)
T ss_pred hhhcccccEEEee
Confidence 3346666666663
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.5e-07 Score=74.74 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccEEEEecC
Q 043856 161 TAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 161 ~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c 228 (275)
..+|+|..|+++++..++.-.. ..+..|+.|++|+++.|..+-- .--.+...|+|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~-----~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCF-----QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHH-----HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 3577777777777766553111 0112577777777777753321 0013455677777777776
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.3e-06 Score=74.07 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=25.6
Q ss_pred CCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceec
Q 043856 193 MPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
+.+.+.|.++.+ .++.+. +++.+-+|..|+++++. ++.+.. -..++++|+|+.+.+
T Consensus 351 LGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N~-Ie~lde--V~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 351 LGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSNQ-IEELDE--VNHIGNLPCLETLRL 406 (490)
T ss_pred hcCEeeeehhhh-hHhhhh-hhHhhhhheeccccccc-hhhHHH--hcccccccHHHHHhh
Confidence 445555555554 344442 44555555555555542 222111 113455555555544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.7e-07 Score=76.07 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=89.7
Q ss_pred hcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC---CCCcc-cceeeccccccccccCccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP---LGKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~---l~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
-+.+|.+|+.|.+.|..... +-..+.+-.+|+.|+|+.|+-++.... +..+. |..|+++-|...+..-..
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv----- 279 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV----- 279 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-----
Confidence 34456666666666655432 333445666777777777655443321 23333 555555544321111000
Q ss_pred cccCCCCCCCCCCCCCC-CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccE
Q 043856 145 EISEDDPSSSSSSSSVT-AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQE 222 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~ 222 (275)
++. --++|+.|.++++...-.... + ......+|+|..|++++|..++. .-..+.+++-|++
T Consensus 280 --------------~V~hise~l~~LNlsG~rrnl~~sh-~--~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 280 --------------AVAHISETLTQLNLSGYRRNLQKSH-L--STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred --------------HHhhhchhhhhhhhhhhHhhhhhhH-H--HHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 011 235788888887654211000 0 00112689999999999977765 2234667899999
Q ss_pred EEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 223 LSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 223 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|.++.|..+ ++.....+..+|+|.+|++.
T Consensus 343 lSlsRCY~i---~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 343 LSLSRCYDI---IPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred eehhhhcCC---ChHHeeeeccCcceEEEEec
Confidence 999998643 33222356778999999884
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-06 Score=75.86 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=57.3
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccC
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
....+||..+. ..-..+++..|+...+|+ .++.+.+|+.|+|+. +.++.|.+ +..|+ |..|.+.+.++++.+|
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 34456777764 356777888888888775 567999999999999 55665543 66788 8888888877899998
Q ss_pred cccc
Q 043856 138 NEFL 141 (275)
Q Consensus 138 ~~~~ 141 (275)
.+.+
T Consensus 133 k~~F 136 (498)
T KOG4237|consen 133 KGAF 136 (498)
T ss_pred hhHh
Confidence 7643
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.7e-05 Score=50.78 Aligned_cols=56 Identities=27% Similarity=0.476 Sum_probs=39.9
Q ss_pred CcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 194 PRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|+|+.|++++| +++.+|. .+.++++|++|++++| .+..++.. .+..+++|++|+++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~---~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPD---AFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETT---TTTTSTTESEEEET
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHH---HHcCCCCCCEEeCc
Confidence 57888999888 7888874 5677899999998866 55555542 45556666666653
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.1e-06 Score=75.14 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=74.7
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
..+...+..+.+|..|++.++....+...+..+++|++|++++ +.+..+..+..++ |+.|+++++. +..+..
T Consensus 85 ~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~-i~~~~~----- 157 (414)
T KOG0531|consen 85 AKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNL-ISDISG----- 157 (414)
T ss_pred hhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccchhhccchhhheeccCc-chhccC-----
Confidence 3344557888899999998888776655577899999999999 7888888888888 9999998765 555432
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccC
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSC 204 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c 204 (275)
+..+++|+.+++.++... .+... . ...+++++.+.+.++
T Consensus 158 ----------------~~~l~~L~~l~l~~n~i~-~ie~~----~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 158 ----------------LESLKSLKLLDLSYNRIV-DIEND----E-LSELISLEELDLGGN 196 (414)
T ss_pred ----------------CccchhhhcccCCcchhh-hhhhh----h-hhhccchHHHhccCC
Confidence 224667777777654321 11100 0 114666666666655
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.3e-05 Score=72.52 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=72.7
Q ss_pred CcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccc
Q 043856 100 LRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLL 177 (275)
Q Consensus 100 L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 177 (275)
++.|+|.+|.....+| .++.++ |+.|+|+++.....+|.. +..+++|+.|+++++.-.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~--------------------~~~l~~L~~LdLs~N~ls 479 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS--------------------LGSITSLEVLDLSYNSFN 479 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH--------------------HhCCCCCCEEECCCCCCC
Confidence 6777888765555565 367777 888888877533455544 457788888888876533
Q ss_pred cccccccccccccCCCCcccEEeEccCcccCcCccccCCC-CCccEEEEecCCCCccCC
Q 043856 178 EEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQT-TALQELSIYSCENLEELP 235 (275)
Q Consensus 178 ~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~~l~~l~ 235 (275)
..++..+ ..+++|+.|++++|.....+|..++.+ .++..+++.+|+.+...|
T Consensus 480 g~iP~~l------~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 480 GSIPESL------GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCchHH------hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 3444322 268888888888885334578776543 466778888776555443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.7e-05 Score=46.15 Aligned_cols=41 Identities=29% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP 116 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~ 116 (275)
++|++|+++++....+|..+++|++|+.|++++| .+..++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999988888888999999999999995 5555544
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.1e-05 Score=45.99 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=31.4
Q ss_pred CcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCC
Q 043856 194 PRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELP 235 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~ 235 (275)
++|++|+++++ +++.+|..++++++|+.|++++| .+..++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 57899999998 79999887999999999999988 354443
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.3e-05 Score=77.03 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=69.9
Q ss_pred CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCcccccc
Q 043856 162 AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
-||+|++|.+.+..-...... ....+||+|..|+|+++ +++.+ .+++++++|+.|.+++.+ +.... ....
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~-----~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe-~e~~~--~l~~ 215 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFS-----QLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLE-FESYQ--DLID 215 (699)
T ss_pred hCcccceEEecCceecchhHH-----HHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCC-CCchh--hHHH
Confidence 589999999987433222111 01227999999999998 68888 689999999999888753 22211 1113
Q ss_pred CCCCCcccceecc---ccccc---h----hhcCCCCccEEEecC
Q 043856 242 TTDIPRLSSLRIG---LKVLP---D----YLLRTTMLQELSISE 275 (275)
Q Consensus 242 ~~~l~~L~~L~l~---l~~lp---~----~l~~L~~L~~L~l~~ 275 (275)
+..+++|+.|+|+ ...-+ . .-..|++|+.|+.|+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 5679999999997 11111 1 123488999998764
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00014 Score=69.74 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPI 236 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~ 236 (275)
+..+++|+.|+++++.-...++..+ ..+++|+.|++++|.-...+|..++++++|+.|++++|.....+|.
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~------~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSL------GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHH------hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 3456666666666543222333211 2566666666666632224666666666666666666654444554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=4.6e-06 Score=78.25 Aligned_cols=175 Identities=22% Similarity=0.261 Sum_probs=83.5
Q ss_pred hhhHHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCc
Q 043856 61 NEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 61 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~ 138 (275)
....+.|.+.+.+.+-|+.+..-+-.... |-.|..|.+|++|.+++|+.-. ...+..+. |+.|--.+ ++..+..
T Consensus 73 l~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~--Sl~Al~~ 148 (1096)
T KOG1859|consen 73 LEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHN--SLDALRH 148 (1096)
T ss_pred HHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhc--cHHHHHH
Confidence 44555667776666555555544332222 6677799999999999985433 22222222 44433211 1111111
Q ss_pred ccc---cccc-------ccCCCCC-C--CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCc
Q 043856 139 EFL---GIEE-------ISEDDPS-S--SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCN 205 (275)
Q Consensus 139 ~~~---~~~~-------~~~~~~~-~--~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~ 205 (275)
.|. +... +...+++ . ...-.++.-+|.|+.|+++.+. +.... .+..+++|+.|+|+++
T Consensus 149 v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-------~Lr~l~~LkhLDlsyN- 219 (1096)
T KOG1859|consen 149 VFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-------NLRRLPKLKHLDLSYN- 219 (1096)
T ss_pred HHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-------HHHhcccccccccccc-
Confidence 110 0000 0000000 0 0000123445666777766532 11111 1115677777777776
Q ss_pred ccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 206 KLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 206 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+..+|..-.--..|+.|.+++| .++.+-. +.++.+|+.|+++
T Consensus 220 ~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~g-----ie~LksL~~LDls 262 (1096)
T KOG1859|consen 220 CLRHVPQLSMVGCKLQLLNLRNN-ALTTLRG-----IENLKSLYGLDLS 262 (1096)
T ss_pred hhccccccchhhhhheeeeeccc-HHHhhhh-----HHhhhhhhccchh
Confidence 56666642221223777777665 3444432 5567777777775
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=3.3e-05 Score=66.70 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=106.3
Q ss_pred hhhHHHHHHhcCCCCCCCeEEecccCCc----cccccc-------CCCCCCcEEeeecCCCCC-cCCC----CCCcc-cc
Q 043856 61 NEKDEQLLEALQPPLNVEKLWIIFYGGN----ILPKWL-------TSLTNLRDLKLVFCENCE-HLPP----LGKLP-LE 123 (275)
Q Consensus 61 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~----~lp~~l-------~~l~~L~~L~L~~c~~~~-~lp~----l~~L~-L~ 123 (275)
..+.+.+-+.+...++|+..+++..... .+|..+ ...++|++|+|+.|-.-. .++. +.... |+
T Consensus 44 ~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~ 123 (382)
T KOG1909|consen 44 TEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLE 123 (382)
T ss_pred HHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHH
Confidence 4455667777777778888888753211 144433 256789999998853332 3333 33444 88
Q ss_pred eeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEcc
Q 043856 124 KLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGS 203 (275)
Q Consensus 124 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~ 203 (275)
+|++.+|. +........+.. +. +.-....+..-+.|+.+...++. +....... -...+...|.|+.+.+..
T Consensus 124 eL~L~N~G-lg~~ag~~l~~a-l~-----~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~-~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 124 ELYLNNCG-LGPEAGGRLGRA-LF-----ELAVNKKAASKPKLRVFICGRNR-LENGGATA-LAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred HHhhhcCC-CChhHHHHHHHH-HH-----HHHHHhccCCCcceEEEEeeccc-cccccHHH-HHHHHHhccccceEEEec
Confidence 88888875 443332211000 00 00000113445678887776533 21111000 000122457888888877
Q ss_pred CcccCc-----CccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc-----ccchhh-cCCCCcc
Q 043856 204 CNKLKA-----LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK-----VLPDYL-LRTTMLQ 269 (275)
Q Consensus 204 c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~-----~lp~~l-~~L~~L~ 269 (275)
+ .+.. +-.++.++++|+.|++++|-.-..-.......+..|++|+.|+++ ++ .+-+.+ ...++|+
T Consensus 195 N-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~ 273 (382)
T KOG1909|consen 195 N-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE 273 (382)
T ss_pred c-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence 6 3331 233466789999999988732111000011135568888888886 11 122222 3367777
Q ss_pred EEEec
Q 043856 270 ELSIS 274 (275)
Q Consensus 270 ~L~l~ 274 (275)
.|.+.
T Consensus 274 vl~l~ 278 (382)
T KOG1909|consen 274 VLELA 278 (382)
T ss_pred eeccC
Confidence 77764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=4.2e-05 Score=66.09 Aligned_cols=193 Identities=20% Similarity=0.191 Sum_probs=113.0
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcc-cc----cccCCCCCCcEEeeecCCCCCcC--------------CCCCCcc-
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNI-LP----KWLTSLTNLRDLKLVFCENCEHL--------------PPLGKLP- 121 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~-lp----~~l~~l~~L~~L~L~~c~~~~~l--------------p~l~~L~- 121 (275)
.....+.+++..+++|++|+++.|-... .+ .-+.+++.|++|.+.+|.....- ..++.-+
T Consensus 79 e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 79 EALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred HHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 4455566777788899999999875432 22 33458999999999998532210 0133334
Q ss_pred cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecccccccc-ccccccccccccCCCCcccEEe
Q 043856 122 LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLE-EWNYRITRKENISIMPRLSSLK 200 (275)
Q Consensus 122 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~-~l~~~i~~~~~~~~l~~L~~L~ 200 (275)
|+.+...++. +..-+..... ..++..|.|+.+.+....-.. ...- -...+.++|+|+.|+
T Consensus 159 Lrv~i~~rNr-len~ga~~~A---------------~~~~~~~~leevr~~qN~I~~eG~~a---l~eal~~~~~LevLd 219 (382)
T KOG1909|consen 159 LRVFICGRNR-LENGGATALA---------------EAFQSHPTLEEVRLSQNGIRPEGVTA---LAEALEHCPHLEVLD 219 (382)
T ss_pred eEEEEeeccc-cccccHHHHH---------------HHHHhccccceEEEecccccCchhHH---HHHHHHhCCcceeee
Confidence 7777777553 4433322111 114456788888886533211 1100 001223799999999
Q ss_pred EccCcccCc-----CccccCCCCCccEEEEecCCCCccCC-cccccc-CCCCCcccceecc--------ccccchhhcCC
Q 043856 201 VGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELP-IPEDRR-TTDIPRLSSLRIG--------LKVLPDYLLRT 265 (275)
Q Consensus 201 l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~-~~~l~~L~~L~l~--------l~~lp~~l~~L 265 (275)
++++. ++. +-..+..+++|++|++.+|. ++.-- ...... -...|+|+.|.+. ...+-..+...
T Consensus 220 l~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 220 LRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred cccch-hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 99984 432 33445567899999999994 32210 000000 1237889999885 22233355667
Q ss_pred CCccEEEecC
Q 043856 266 TMLQELSISE 275 (275)
Q Consensus 266 ~~L~~L~l~~ 275 (275)
+.|..|.|++
T Consensus 298 ~dL~kLnLng 307 (382)
T KOG1909|consen 298 PDLEKLNLNG 307 (382)
T ss_pred hhhHHhcCCc
Confidence 7888887753
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00024 Score=68.52 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=71.6
Q ss_pred CcccEeeccccccc-cccccccccccccCCCCcccEEeEccCcccCc--CccccCCCCCccEEEEecCCCCccCCccccc
Q 043856 164 PKLKSLEIKELDLL-EEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQELSIYSCENLEELPIPEDR 240 (275)
Q Consensus 164 ~~L~~L~l~~~~~l-~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 240 (275)
.+|+.|++++...+ ..|+..++ ..||+|+.|.+.+- .+.. +-....++|+|..|+|+++ ++..+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig-----~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~----- 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG-----TMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLS----- 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh-----hhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcH-----
Confidence 47999999885553 46765443 26999999999874 2321 3334567999999999997 455553
Q ss_pred cCCCCCcccceecc---ccccc--hhhcCCCCccEEEecC
Q 043856 241 RTTDIPRLSSLRIG---LKVLP--DYLLRTTMLQELSISE 275 (275)
Q Consensus 241 ~~~~l~~L~~L~l~---l~~lp--~~l~~L~~L~~L~l~~ 275 (275)
++.++++|+.|.+. +..-. ..+-+|++|+.||||.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 47789999999886 33222 2567899999999973
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.01 E-value=6e-05 Score=68.68 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=89.4
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCccccccccccCCC
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDD 150 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (275)
.+..++.+.++.+.....-..+..+++|..|++.+ +.+..+.. +..++ |+.|+++++. ++.+..
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~------------ 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG------------ 135 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-cccccc------------
Confidence 44556666666655544334466899999999999 67777777 88899 9999999764 666542
Q ss_pred CCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCC
Q 043856 151 PSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCE 229 (275)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 229 (275)
+..++.|+.|++.++. +..+.. ...+++|+.+++.++ .+..+... +..+.+|+.+++.++.
T Consensus 136 ---------l~~l~~L~~L~l~~N~-i~~~~~-------~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 136 ---------LSTLTLLKELNLSGNL-ISDISG-------LESLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ---------hhhccchhhheeccCc-chhccC-------CccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCc
Confidence 4467779999998754 333332 225889999999998 57766542 4678899999988764
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0012 Score=56.34 Aligned_cols=69 Identities=22% Similarity=0.112 Sum_probs=40.4
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCccccccc-CCCCCCcEEeeecCCC-CCcCC-CCCCcc-cceeecccc
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPKWL-TSLTNLRDLKLVFCEN-CEHLP-PLGKLP-LEKLELRDL 130 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~L~~c~~-~~~lp-~l~~L~-L~~L~l~~~ 130 (275)
.+..+|...+.+++.|+.|+++.|+....-..+ ..+.+|++|.|.+... ++... .+..+| ++.|+++.+
T Consensus 84 SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 84 SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 445566666777888888888776643311111 2456788887777432 11221 255677 777777754
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0044 Score=50.03 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=66.5
Q ss_pred CCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccc
Q 043856 97 LTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELD 175 (275)
Q Consensus 97 l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 175 (275)
+.+...++|++ +.+..++.+..++ |..|.+.+++ +..|.... ...+|+|+.|.+.+..
T Consensus 41 ~d~~d~iDLtd-Ndl~~l~~lp~l~rL~tLll~nNr-It~I~p~L-------------------~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 41 LDQFDAIDLTD-NDLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDL-------------------DTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccceecccc-cchhhcccCCCccccceEEecCCc-ceeeccch-------------------hhhccccceEEecCcc
Confidence 44667788888 5666666677777 8899888654 77776542 1246788888887632
Q ss_pred --cccccccccccccccCCCCcccEEeEccCcccCcCc----cccCCCCCccEEEEecC
Q 043856 176 --LLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP----DYLLQTTALQELSIYSC 228 (275)
Q Consensus 176 --~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~c 228 (275)
.+.++. ....+|+|++|.+-++| .+.-. .-+..+|+|+.|++.+-
T Consensus 100 i~~l~dl~-------pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLD-------PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcc-------hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 222222 22268888888888875 32211 12456788888887653
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0014 Score=56.00 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=36.2
Q ss_pred CCCCCCeEEecccCCcc---cccccCCCCCCcEEeeecCCCCCcCCCCCCcc---cceeecccc
Q 043856 73 PPLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP---LEKLELRDL 130 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~---L~~L~l~~~ 130 (275)
..+.++.+++.+|.... +-.-+.+++.|++|+|+.|.....+..+. +| |+.|.+.+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGT 131 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCC
Confidence 46688999998887543 11223489999999999864433332222 23 777777643
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.00058 Score=57.71 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=69.8
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.+.+.|+..||....+. -..+++.|+.|.|+- ++++++.++.... |++|+|..+. +..+..-++
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~-I~sldEL~Y----------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNC-IESLDELEY----------- 83 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcc-cccHHHHHH-----------
Confidence 457788888888765322 233899999999998 7888888887788 9999998553 666554333
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeE
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKV 201 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l 201 (275)
+.++|+|+.|.|...+.-..-...- ....+..+|+|++|+=
T Consensus 84 -------LknlpsLr~LWL~ENPCc~~ag~nY-R~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 -------LKNLPSLRTLWLDENPCCGEAGQNY-RRKVLRVLPNLKKLDN 124 (388)
T ss_pred -------HhcCchhhhHhhccCCcccccchhH-HHHHHHHcccchhccC
Confidence 6688999999887655432211100 0001125788888753
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.00057 Score=64.69 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeecccccccccc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRV 136 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l 136 (275)
...+=+++.-++.|++|+++.|+....- .+..+++|++|+|++ |.+..+|.++.-. |..|.|+++. ++.+
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN~-l~tL 247 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNNA-LTTL 247 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecccH-HHhh
Confidence 3334445555667777777777665433 566777788888877 5666666655443 7777777553 4443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0017 Score=52.28 Aligned_cols=69 Identities=19% Similarity=0.414 Sum_probs=51.4
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..++.++.|.+.+|..+..|..+. .....|+|+.|.|++|+++++-- ..+..+++|+.|.+.+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~----l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLER----LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHH----hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4467888889999999888877521 11157899999999999998731 346678999999888766443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.007 Score=53.95 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=101.5
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccc-c-CCCCCCcEEeeecCCCCCcCC--CCC-Ccc-cceeeccccccccccCc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKW-L-TSLTNLRDLKLVFCENCEHLP--PLG-KLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~-l-~~l~~L~~L~L~~c~~~~~lp--~l~-~L~-L~~L~l~~~~~l~~l~~ 138 (275)
.+...-..+..|+.|..+++.... .+-| + .+..+|+.|.+..|...+... .++ +.+ |+.+++..|.....-
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-- 362 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-- 362 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--
Confidence 355555567788999888877643 2222 2 277899999999987654332 233 233 777777666422211
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCC
Q 043856 139 EFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQT 217 (275)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l 217 (275)
.+. ....+++.|+.|.++.|..+..--- ..-......+..|+.+.+.+||.+.. .-..+..+
T Consensus 363 tL~----------------sls~~C~~lr~lslshce~itD~gi-~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 363 TLA----------------SLSRNCPRLRVLSLSHCELITDEGI-RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hHh----------------hhccCCchhccCChhhhhhhhhhhh-hhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 111 0133688999999988776543300 00011223577899999999987765 33446667
Q ss_pred CCccEEEEecCCCCccCCccccccCCCCCcccceec
Q 043856 218 TALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
++|+.+++.+|..+..-+... ...++|++++...
T Consensus 426 ~~Leri~l~~~q~vtk~~i~~--~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAISR--FATHLPNIKVHAY 459 (483)
T ss_pred cccceeeeechhhhhhhhhHH--HHhhCccceehhh
Confidence 899999999998765543321 1235777776655
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.014 Score=48.84 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=16.4
Q ss_pred CCcccEEeEccCcccCc---CccccCCCCCccEEEEecCC
Q 043856 193 MPRLSSLKVGSCNKLKA---LPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~---lp~~l~~l~~L~~L~l~~c~ 229 (275)
+|+|++|.++++ +++- ++ .+..+.+|..|++..|+
T Consensus 90 ~P~l~~l~ls~N-ki~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSGN-KIKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecCC-ccccccccc-hhhhhcchhhhhcccCC
Confidence 356666665554 3332 22 13334455555555554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.0032 Score=57.97 Aligned_cols=131 Identities=22% Similarity=0.252 Sum_probs=68.2
Q ss_pred CCCCCeEEecccCCcc---cccccCCCCCCcEEeeecC-CCCCcCCC-----CCCcc-cceeeccccccccccCcccccc
Q 043856 74 PLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFC-ENCEHLPP-----LGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c-~~~~~lp~-----l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
+++|+.|.+.++.... +-......++|+.|++++| ......+. ....+ |+.|+++.+..+........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l-- 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL-- 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH--
Confidence 6777788777765543 2233347788888888773 33222221 11223 67777776654333222111
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc--CccccCCCCCcc
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQ 221 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~ 221 (275)
...+++|+.|.+.+|..+..--. ......+++|+.|++++|..++. +.....++++|+
T Consensus 265 ----------------~~~c~~L~~L~l~~c~~lt~~gl----~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~ 324 (482)
T KOG1947|consen 265 ----------------ASRCPNLETLSLSNCSNLTDEGL----VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLR 324 (482)
T ss_pred ----------------HhhCCCcceEccCCCCccchhHH----HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchh
Confidence 12367788887777765322111 00112577788888887766532 222233345544
Q ss_pred EEEEe
Q 043856 222 ELSIY 226 (275)
Q Consensus 222 ~L~l~ 226 (275)
.|.+.
T Consensus 325 ~l~~~ 329 (482)
T KOG1947|consen 325 ELKLL 329 (482)
T ss_pred hhhhh
Confidence 44433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.013 Score=49.10 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCcccEeecccccc--ccccccccccccccCCCCcccEEeEccC--cccCcCccccCCCCCccEEEEecCCC--CccCCc
Q 043856 163 FPKLKSLEIKELDL--LEEWNYRITRKENISIMPRLSSLKVGSC--NKLKALPDYLLQTTALQELSIYSCEN--LEELPI 236 (275)
Q Consensus 163 l~~L~~L~l~~~~~--l~~l~~~i~~~~~~~~l~~L~~L~l~~c--~~l~~lp~~l~~l~~L~~L~l~~c~~--l~~l~~ 236 (275)
|..|+.|++.++.- +..+| .+|+|++|.++.+ .-...++...-.+|+|++|.++++.. +.++..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P----------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFP----------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred ccchhhhhhhccceeecccCC----------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 55667776665432 23333 6899999999877 22233555555669999999998751 233332
Q ss_pred cccccCCCCCcccceeccccccch-------hhcCCCCccEEE
Q 043856 237 PEDRRTTDIPRLSSLRIGLKVLPD-------YLLRTTMLQELS 272 (275)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~l~~lp~-------~l~~L~~L~~L~ 272 (275)
...+++|..|++.....+. .+.-+++|++|+
T Consensus 112 -----l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 -----LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred -----hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 4456677777775222221 234466666665
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.041 Score=44.61 Aligned_cols=64 Identities=27% Similarity=0.211 Sum_probs=40.2
Q ss_pred HHhcCCCCCCCeEEecccCCcccccccC-CCCCCcEEeeecCC--CCCcCCCCCCcc-cceeeccccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPKWLT-SLTNLRDLKLVFCE--NCEHLPPLGKLP-LEKLELRDLK 131 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~c~--~~~~lp~l~~L~-L~~L~l~~~~ 131 (275)
.+.+..+++|..|.+.+|....+-..+. .+++|+.|.+.+|+ .+..+-++..+| |++|.+-+++
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 4556667777888887777666544444 56678888877742 223344455566 7777766554
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.023 Score=28.63 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=13.3
Q ss_pred cccEEeEccCcccCcCccccC
Q 043856 195 RLSSLKVGSCNKLKALPDYLL 215 (275)
Q Consensus 195 ~L~~L~l~~c~~l~~lp~~l~ 215 (275)
+|++|++++| +++.+|.+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 4677777777 6667776544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.034 Score=26.13 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=6.7
Q ss_pred cccEEeEccCcccCcCc
Q 043856 195 RLSSLKVGSCNKLKALP 211 (275)
Q Consensus 195 ~L~~L~l~~c~~l~~lp 211 (275)
+|+.|++++| +++++|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 4555566555 355443
|
... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.015 Score=51.83 Aligned_cols=133 Identities=19% Similarity=0.285 Sum_probs=82.4
Q ss_pred CCCCCcEEeeecCCCCCcCC--CCCC-cc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeec
Q 043856 96 SLTNLRDLKLVFCENCEHLP--PLGK-LP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEI 171 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~~~lp--~l~~-L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 171 (275)
.+..|+.|+.++|..+...+ .+++ -+ |+.|.++.|..+.......+ -.+.+.|+.+++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l------------------~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML------------------GRNCPHLERLDL 353 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh------------------hcCChhhhhhcc
Confidence 46677888888876655443 2332 34 88888888776554433222 225778888888
Q ss_pred cccccccccccccccccccCCCCcccEEeEccCcccCcC-----ccccCCCCCccEEEEecCCCCccCCccccccCCCCC
Q 043856 172 KELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-----PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIP 246 (275)
Q Consensus 172 ~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~ 246 (275)
.+|.....-.. ......+|.|+.|.++.|..++.- ...-..+..|+.+.+.+||.+...-. ..+...+
T Consensus 354 e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L---e~l~~c~ 426 (483)
T KOG4341|consen 354 EECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL---EHLSICR 426 (483)
T ss_pred cccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH---HHHhhCc
Confidence 77765433211 112236899999999988766542 22334567889999999986654322 1345577
Q ss_pred cccceec
Q 043856 247 RLSSLRI 253 (275)
Q Consensus 247 ~L~~L~l 253 (275)
+|+.+++
T Consensus 427 ~Leri~l 433 (483)
T KOG4341|consen 427 NLERIEL 433 (483)
T ss_pred ccceeee
Confidence 8888766
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.029 Score=28.28 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=14.2
Q ss_pred CCCeEEecccCCcccccccCC
Q 043856 76 NVEKLWIIFYGGNILPKWLTS 96 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~ 96 (275)
+|++|++++|....+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477788887766667766543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.0017 Score=54.90 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=18.3
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
.||.|+.|.++-+ +++++- .+..++.|++|.++.+
T Consensus 39 kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 39 KMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKN 73 (388)
T ss_pred hcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhc
Confidence 4566666666554 455543 2444555555555543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.012 Score=54.17 Aligned_cols=116 Identities=27% Similarity=0.354 Sum_probs=72.0
Q ss_pred CCCCCcEEeeecCCCCCc--C-CCCCCcc-cceeecccc-ccccccCccccccccccCCCCCCCCCCCCCCCCCcccEee
Q 043856 96 SLTNLRDLKLVFCENCEH--L-PPLGKLP-LEKLELRDL-KSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLE 170 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~~~--l-p~l~~L~-L~~L~l~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 170 (275)
.+++|+.|.+.+|..+.. + +.....+ |+.|+++++ ......+.... .....+++|+.|+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------~~~~~~~~L~~l~ 249 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL----------------LLLSICRKLKSLD 249 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh----------------hhhhhcCCcCccc
Confidence 467888888888766554 2 2344456 888888763 22222111100 0134568899999
Q ss_pred ccccccccccccccccccccCCCCcccEEeEccCcccCc--CccccCCCCCccEEEEecCCCC
Q 043856 171 IKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 171 l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l 231 (275)
+..+..+...-... ....+++|+.|.+.+|..++. +-.....+++|++|++++|..+
T Consensus 250 l~~~~~isd~~l~~----l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 250 LSGCGLVTDIGLSA----LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhhhhccCchhHHH----HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 98877544322100 111488999999999976553 3344456889999999999875
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.007 Score=46.08 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=55.4
Q ss_pred CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCcccccc
Q 043856 162 AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
....|+..++++. .++.++..+. ..||.++.|++.++ .+..+|..+..++.|+.|+++.++ +...|. -
T Consensus 51 ~~~el~~i~ls~N-~fk~fp~kft-----~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~----v 118 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKKFPKKFT-----IKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPR----V 118 (177)
T ss_pred CCceEEEEecccc-hhhhCCHHHh-----hccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchH----H
Confidence 4556777788763 3555554222 15778889999887 788899889899999999998875 333443 3
Q ss_pred CCCCCcccceecc
Q 043856 242 TTDIPRLSSLRIG 254 (275)
Q Consensus 242 ~~~l~~L~~L~l~ 254 (275)
+..+.++..|+..
T Consensus 119 i~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 119 IAPLIKLDMLDSP 131 (177)
T ss_pred HHHHHhHHHhcCC
Confidence 4446666666653
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.015 Score=44.37 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=49.0
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccC-CCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLT-SLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
.+-.+.....|...++++|....+|..+. +++.++.|++.+ +.+..+| .+..+| |+.|+++.++ +...|..
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~v 118 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRV 118 (177)
T ss_pred HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHH
Confidence 34445555677777888887777777665 677888888887 6677777 366777 8888888654 4444443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.12 Score=44.01 Aligned_cols=47 Identities=26% Similarity=0.147 Sum_probs=29.4
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcc-ccc----ccCCCCCCcEEeeecC
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNI-LPK----WLTSLTNLRDLKLVFC 108 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~-lp~----~l~~l~~L~~L~L~~c 108 (275)
.+..-+..++-+|++|+..+++.|-... +|. .|++-+.|++|.+.+|
T Consensus 79 ~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 79 SNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 3444556677777777777777654322 443 3346677777777775
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.044 Score=46.54 Aligned_cols=184 Identities=15% Similarity=0.080 Sum_probs=93.7
Q ss_pred chhhHHHHHHhcCCCCCCCeEEecccC-Cc---ccccc-------cCCCCCCcEEeeecCCCCCcCCC-----CCCcc-c
Q 043856 60 KNEKDEQLLEALQPPLNVEKLWIIFYG-GN---ILPKW-------LTSLTNLRDLKLVFCENCEHLPP-----LGKLP-L 122 (275)
Q Consensus 60 ~~~~~~~l~~~l~~l~~L~~L~l~~~~-~~---~lp~~-------l~~l~~L~~L~L~~c~~~~~lp~-----l~~L~-L 122 (275)
.-.+.+.+...+..-.+|+..+++... +. .+|+. +.++++|+..+|+.|-.....|. +.+-. |
T Consensus 43 gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l 122 (388)
T COG5238 43 GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDL 122 (388)
T ss_pred cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCc
Confidence 334556667777777777777776421 11 13332 34788999999998655544443 33334 8
Q ss_pred ceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEc
Q 043856 123 EKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVG 202 (275)
Q Consensus 123 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~ 202 (275)
..|.+++|. +..+..+-.+..-. . --.......=|.|+.......+ +...+...... .+..-.+|+.+.+.
T Consensus 123 ~HL~l~NnG-lGp~aG~rigkal~-~-----la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~-~l~sh~~lk~vki~ 193 (388)
T COG5238 123 VHLKLNNNG-LGPIAGGRIGKALF-H-----LAYNKKAADKPKLEVVICGRNR-LENGSKELSAA-LLESHENLKEVKIQ 193 (388)
T ss_pred eeEEeecCC-CCccchhHHHHHHH-H-----HHHHhhhccCCCceEEEeccch-hccCcHHHHHH-HHHhhcCceeEEee
Confidence 888888774 55443321110000 0 0000012345566666654422 22111100000 00112478888887
Q ss_pred cCcccCc------CccccCCCCCccEEEEecCCCCccCCc-cccccCCCCCcccceecc
Q 043856 203 SCNKLKA------LPDYLLQTTALQELSIYSCENLEELPI-PEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 203 ~c~~l~~------lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~l~~L~~L~l~ 254 (275)
.+ .++. +-.++..+.+|+.|++.++.. +..-. .-...+..|+.|+.|.++
T Consensus 194 qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtf-t~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 194 QN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF-TLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred ec-CcCcchhHHHHHHHHHHhCcceeeeccccch-hhhhHHHHHHHhcccchhhhcccc
Confidence 76 3441 112345678999999988742 11100 001134567888888885
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.033 Score=45.05 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=43.3
Q ss_pred CCCcccEEeEccCcccCc--CccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 192 IMPRLSSLKVGSCNKLKA--LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.++.++.|++.+|..+.. +-.--+-.++|+.|+|++|+.+++.-. ..+..+++|+.|.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH---HHHHHhhhhHHHHhc
Confidence 678899999999976653 111112468999999999998876433 245678888888885
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.39 E-value=0.68 Score=24.00 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=12.0
Q ss_pred CcccEEeEccCcccCcCccc
Q 043856 194 PRLSSLKVGSCNKLKALPDY 213 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~ 213 (275)
++|+.|++.+| +++.+|..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 46666777666 56666654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.39 E-value=0.68 Score=24.00 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=12.0
Q ss_pred CcccEEeEccCcccCcCccc
Q 043856 194 PRLSSLKVGSCNKLKALPDY 213 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~ 213 (275)
++|+.|++.+| +++.+|..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 46666777666 56666654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=83.50 E-value=7 Score=28.60 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=10.6
Q ss_pred CCcccEEeEccCcccCcCcc-ccCCCCCccEEEE
Q 043856 193 MPRLSSLKVGSCNKLKALPD-YLLQTTALQELSI 225 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 225 (275)
+++|+.+.+.. .+..++. .+.++++|+.+.+
T Consensus 34 ~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 34 CTSLKSINFPN--NLTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp -TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEE
T ss_pred ccccccccccc--cccccceeeeecccccccccc
Confidence 44455555433 2333332 1233334555544
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=83.42 E-value=0.74 Score=23.98 Aligned_cols=15 Identities=27% Similarity=0.771 Sum_probs=7.9
Q ss_pred CcccEEeEccCcccC
Q 043856 194 PRLSSLKVGSCNKLK 208 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~ 208 (275)
|+|+.|+|++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 9e-08
Identities = 60/322 (18%), Positives = 103/322 (31%), Gaps = 77/322 (23%)
Query: 8 YLWFEVVDREDEDWEDE---EEDEDEGGEDEDEDGGYEEEE-----GGEVVDGEDEERRR 59
+ E V R + + E Y E+ +V + R +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM----YIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 60 KNEKDEQLLEALQPPLNVE--------KLWII-----------FYGGNILPKWLTS---- 96
K Q L L+P NV K W+ I WL
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCN 193
Query: 97 --------LTNL-RDLKLVFCENCEHLPPLGKLPLE--KLELRDLKSVKRVGNEFLGIEE 145
L L + + +H + KL + + ELR L K N L +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 146 ISEDDPSS------------SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIM 193
+ + + ++ VT F L + + L+ + +T E S++
Sbjct: 253 VQ--NAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHIS-LDHHSMTLTPDEVKSLL 307
Query: 194 PRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDR-RTTDIPRLSS-L 251
LK C + + LP +L T + LSI + E++ + D + + +L++ +
Sbjct: 308 -----LKYLDC-RPQDLPREVLTTNPRR-LSIIA-ESIRDGLATWDNWKHVNCDKLTTII 359
Query: 252 RIGLKVLPDYLLRTTMLQELSI 273
L VL R M LS+
Sbjct: 360 ESSLNVLEPAEYR-KMFDRLSV 380
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 23/208 (11%)
Query: 82 IIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLPLEKLELRDLKSVKRVGNEFL 141
+ F G L + L+ + ++E R +++K +
Sbjct: 17 LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL-- 74
Query: 142 GIEEISEDDPSS-SSSSSSVTAFPK----LKSLEIKELDLLEEWNYRITR-KENISIMPR 195
+E+ ++ + S + FP L L+ + + + + +
Sbjct: 75 -LEDATQPGRVALELRSVPLPQFPDQAFRLSHLQ--HMTI---DAAGLMELPDTMQQFAG 128
Query: 196 LSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELP--IPEDRRTTDIPRLSSLRI 253
L +L + + N L+ALP + L+ELSI +C L ELP + + + L +L+
Sbjct: 129 LETLTL-ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 254 ------GLKVLPDYLLRTTMLQELSISE 275
G++ LP + L+ L I
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRN 215
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 40/196 (20%), Positives = 65/196 (33%), Gaps = 38/196 (19%)
Query: 90 LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147
LP + L L L LP + L L +L +R + +
Sbjct: 119 LPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTEL----------- 166
Query: 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITR-KENISIMPRLSSLKVGSCNK 206
P +S+ + L +L+ L L I +I+ + L SLK+ +
Sbjct: 167 ---PEPLASTDASGEHQGLVNLQ--SLRL---EWTGIRSLPASIANLQNLKSLKI-RNSP 217
Query: 207 LKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI-------GLKVLP 259
L AL + L+EL + C L P + L+ L LP
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYP-------PIFGGRAPLKRLILKDCSNLLTLP 270
Query: 260 DYLLRTTMLQELSISE 275
+ R T L++L +
Sbjct: 271 LDIHRLTQLEKLDLRG 286
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 44/179 (24%), Positives = 68/179 (37%), Gaps = 30/179 (16%)
Query: 90 LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLPLEKLELRDLKSVKRVGNEFLGIEEISE 148
LP + SL LR+L + C LP L E + L +++ + E+ GI +
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASG-EHQGLVNLQSLRLEWTGIRSL-- 198
Query: 149 DDPSS----------SSSSSSVTAFP----KLKSLEIKELDLLEEWNYRITRKENISIMP 194
P+S +S ++A L LE ELDL
Sbjct: 199 --PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE--ELDL-RGCTALRNYPPIFGGRA 253
Query: 195 RLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253
L L + C+ L LP + + T L++L + C NL LP + I +L + I
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-------SLIAQLPANCI 305
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 21/201 (10%)
Query: 88 NILPKWLTSLTNLRDLKLVFCENC-EHLPP--LGKLPLEKLELRDLKSVKRV--GNEFLG 142
+ + ++SL +L L N + P + L +++ + G +
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226
Query: 143 IEEISEDDPSSSSSSS-SVTAFPKLKSLEIKELDLLEEWNYRITRKENISI--MPRLSSL 199
I+ + S F L + ++ ++L + + + + L L
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL--QKH-YFFNISSNTFHCFSGLQEL 283
Query: 200 KVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSL-----RIG 254
+ + L LP L+ + L++L + + E L ++ P L+ L
Sbjct: 284 DLTA-THLSELPSGLVGLSTLKKLVLSAN-KFENLC---QISASNFPSLTHLSIKGNTKR 338
Query: 255 LKVLPDYLLRTTMLQELSISE 275
L++ L L+EL +S
Sbjct: 339 LELGTGCLENLENLRELDLSH 359
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 6e-04
Identities = 28/170 (16%), Positives = 49/170 (28%), Gaps = 45/170 (26%)
Query: 94 LTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152
L +LT + L L N L PL + L L + ++ + I+
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV--------TESKVKDVTPIAN---- 175
Query: 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD 212
L SL + +I ++ + L N++ +
Sbjct: 176 ----------LTDLYSLSLN--------YNQIEDISPLASLTSLHYFTAYV-NQITDITP 216
Query: 213 YLLQTTALQELSIYS-----------CENLEELPIPEDRRTTDIPRLSSL 251
+ T L L I + L L I + +DI + L
Sbjct: 217 -VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI-GTNQISDINAVKDL 264
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 275 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.67 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.67 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.65 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.65 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.65 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.64 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.64 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.64 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.63 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.63 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.63 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.63 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.62 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.62 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.61 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.6 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.6 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.6 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.6 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.6 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.59 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.59 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.58 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.58 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.58 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.58 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.58 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.58 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.58 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.57 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.57 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.56 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.56 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.56 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.55 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.55 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.54 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.54 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.54 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.54 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.53 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.53 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.53 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.53 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.52 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.52 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.51 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.51 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.51 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.51 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.5 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.5 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.5 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.5 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.49 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.49 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.48 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.48 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.47 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.47 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.47 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.47 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.47 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.47 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.46 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.46 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.46 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.45 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.45 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.44 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.44 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.43 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.43 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.43 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.43 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.42 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.4 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.4 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.4 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.4 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.39 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.39 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.39 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.39 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.39 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.38 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.38 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.38 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.36 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.36 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.36 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.35 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.31 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.3 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.28 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.28 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.28 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.28 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.27 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.24 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.23 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.23 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.21 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.21 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.2 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.18 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.17 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.17 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.17 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.14 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.12 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.08 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.06 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.01 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.99 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.99 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.98 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.96 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.93 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.93 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.92 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.92 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.91 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.88 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.87 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.87 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.82 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.79 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.76 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.71 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.69 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.62 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.59 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.52 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.47 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.41 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.37 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.3 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.3 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.16 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.06 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.96 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.93 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.87 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.53 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.31 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.8 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.57 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.45 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.43 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.4 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 94.59 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 93.7 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 90.8 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 89.6 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 82.77 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-20 Score=160.66 Aligned_cols=197 Identities=21% Similarity=0.318 Sum_probs=131.4
Q ss_pred HHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccc-
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLG- 142 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~- 142 (275)
.+|..+..+++|++|++++|....+|..++++++|++|++++| .+..+| .++.++ |++|++++|+.+..+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 4566677777888888887776667877788888888888875 344666 466777 888888877767777655432
Q ss_pred --------cccccCCCCC---CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc
Q 043856 143 --------IEEISEDDPS---SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP 211 (275)
Q Consensus 143 --------~~~~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp 211 (275)
...+..+.++ -......+..+++|+.|+++++. +..++.. +..+++|+.|++++|.....+|
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~------l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA------IHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG------GGGCTTCCEEECTTCTTCCBCC
T ss_pred cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh------hccCCCCCEEECcCCcchhhhH
Confidence 1111111111 00122235556677777776543 3333321 2257788888888876666677
Q ss_pred cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc----ccccchhhcCCCCccEEEec
Q 043856 212 DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 212 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp~~l~~L~~L~~L~l~ 274 (275)
..++.+++|++|++++|+..+.+|. .+..+++|++|+++ .+.+|.+++++++|+.+++.
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPL----DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCT----TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred HHhcCCCCCCEEECCCCCchhhcch----hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 7777788888888888877777776 56678888888885 66788888888888887764
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-20 Score=160.08 Aligned_cols=179 Identities=22% Similarity=0.345 Sum_probs=145.2
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC-CC---------Ccc-cceeeccccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP-LG---------KLP-LEKLELRDLKSV 133 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~---------~L~-L~~L~l~~~~~l 133 (275)
..+|..++.+++|++|++++|....+|..++++++|++|++++|+....+|. ++ .++ |+.|+++++. +
T Consensus 117 ~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l 195 (328)
T 4fcg_A 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-I 195 (328)
T ss_dssp CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-C
T ss_pred cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-c
Confidence 3578888999999999999998878999999999999999999988888875 33 377 9999999874 7
Q ss_pred cccCccccccccccCCCCCC---CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC
Q 043856 134 KRVGNEFLGIEEISEDDPSS---SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL 210 (275)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l 210 (275)
+.+|..+.....+..+.++. ......+..+++|+.|++++|.....++. .+..+++|+.|++++|..+..+
T Consensus 196 ~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP------IFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC------CTTCCCCCCEEECTTCTTCCBC
T ss_pred CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH------HhcCCCCCCEEECCCCCchhhc
Confidence 78877655444333332221 12233567899999999999887766664 2337999999999999888889
Q ss_pred ccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 211 PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 211 p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|..+.++++|++|++++|+.++.+|. .+..+++|+.+.+.
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPS----LIAQLPANCIILVP 309 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCG----GGGGSCTTCEEECC
T ss_pred chhhhcCCCCCEEeCCCCCchhhccH----HHhhccCceEEeCC
Confidence 99999999999999999999999998 78889999999875
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=129.97 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=126.1
Q ss_pred HhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccc
Q 043856 69 EALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 69 ~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
..+..+++|++|+++++....+ |..+..+++|++|++++|..+..++ .+..++ |++|+++++. +..++..
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----- 123 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPG----- 123 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT-----
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHh-----
Confidence 4567777888888877766553 6667777888888887765455553 366677 8888887664 4444322
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEE
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQEL 223 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L 223 (275)
.+..+++|+.|+++++. +..++. ..+..+++|+.|++++| +++.+|. .+..+++|++|
T Consensus 124 --------------~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 124 --------------LFRGLAALQYLYLQDNA-LQALPD-----DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp --------------TTTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred --------------HhhCCcCCCEEECCCCc-ccccCH-----hHhccCCCccEEECCCC-cccccCHHHhcCccccCEE
Confidence 14578899999998764 333332 12336899999999998 6888775 47889999999
Q ss_pred EEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 224 SIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 224 ~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
++++|......+. .+..+++|+.|+++ ++.+|. .+..+++|+.|++++
T Consensus 183 ~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 183 LLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp ECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred ECCCCcccccCHh----HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 9999853333344 67789999999996 777764 589999999999874
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=150.99 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=137.7
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
.+|..+..+++|++|++++|.... +|..+..+++|++|++++|.....+|. ++.++ |++|++++|.....+|..+..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 345666667777777777766553 666666777777777777554445553 55666 777777766533355555443
Q ss_pred cccccCCCCCCC----CCCCCCCCCCcccEeecccccccccccccccc--------------------------------
Q 043856 143 IEEISEDDPSSS----SSSSSVTAFPKLKSLEIKELDLLEEWNYRITR-------------------------------- 186 (275)
Q Consensus 143 ~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~-------------------------------- 186 (275)
...+..+.++.. .....+..+++|+.|+++++.-...+|..+..
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 333333222211 12334667888888888766433222221100
Q ss_pred --------------------------------ccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccC
Q 043856 187 --------------------------------KENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEEL 234 (275)
Q Consensus 187 --------------------------------~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 234 (275)
...+..+++|+.|++++|.-...+|..++++++|+.|++++|...+.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 011234678999999998433469999999999999999999766688
Q ss_pred CccccccCCCCCcccceecc----ccccchhhcCCCCccEEEecC
Q 043856 235 PIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 235 ~~~~~~~~~~l~~L~~L~l~----l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|. .++.+++|++|+++ .+.+|..++++++|++|++++
T Consensus 673 p~----~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 673 PD----EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CG----GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred Ch----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 87 78889999999997 448899999999999999974
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=135.56 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=107.5
Q ss_pred HHHhcCCCCCCCeEEecc-cCCcc-cccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCccccc
Q 043856 67 LLEALQPPLNVEKLWIIF-YGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~-~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
+|..+..+++|++|++++ +.... +|..++++++|++|++++|.....+|. +..++ |++|+++++.....+|..+..
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 566777777888888874 44432 677777788888888877544445553 66677 777777766522245544333
Q ss_pred cccccCCCCCCC----CCCCCCCCCC-cccEeeccccccccccccccccccccCCCCcccEEeEccCcccC-cCccccCC
Q 043856 143 IEEISEDDPSSS----SSSSSVTAFP-KLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK-ALPDYLLQ 216 (275)
Q Consensus 143 ~~~~~~~~~~~~----~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~ 216 (275)
...+..+.++.. .....+..++ +|+.|+++++.-....+..+ ..++ |+.|++++| +++ .+|..+..
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~------~~l~-L~~L~Ls~N-~l~~~~~~~~~~ 219 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF------ANLN-LAFVDLSRN-MLEGDASVLFGS 219 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG------GGCC-CSEEECCSS-EEEECCGGGCCT
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH------hCCc-ccEEECcCC-cccCcCCHHHhc
Confidence 222222222110 1122244454 66666666543222222211 1233 666666665 333 34555666
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc-ccchhhcCCCCccEEEec
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK-VLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~-~lp~~l~~L~~L~~L~l~ 274 (275)
+++|+.|++++|.. ...+. .+..+++|++|+++ +. .+|.++..+++|+.|+++
T Consensus 220 l~~L~~L~L~~N~l-~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 220 DKNTQKIHLAKNSL-AFDLG----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp TSCCSEEECCSSEE-CCBGG----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred CCCCCEEECCCCce-eeecC----cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 66666666666532 22222 24456677777775 43 566667777777777765
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=136.77 Aligned_cols=193 Identities=16% Similarity=0.205 Sum_probs=109.7
Q ss_pred HHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccc-cc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEF-LG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~-~~ 142 (275)
+..+..+++|++|++++|....+ |..+..+++|++|+|++| .+..+|. +..++ |++|+++++. +..++... ..
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 169 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNR 169 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhc
Confidence 45677778888888887776653 466777888888888874 4555553 66677 8888887664 55555421 11
Q ss_pred cccccCCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCC
Q 043856 143 IEEISEDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQ 216 (275)
Q Consensus 143 ~~~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~ 216 (275)
...+..+.+.. ......+..+++|+.|+++++. +..++ ....+++|+.|++++| .++.+ |..+..
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 240 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-------NLTPLVGLEELEMSGN-HFPEIRPGSFHG 240 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-------CCTTCTTCCEEECTTS-CCSEECGGGGTT
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-------cccccccccEEECcCC-cCcccCcccccC
Confidence 11111111110 0011123344555555554432 22222 1224566666666666 45443 455666
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
+++|++|++++|. +..++.. .+..+++|+.|+++ ++.+|. .+..+++|+.|++++
T Consensus 241 l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 241 LSSLKKLWVMNSQ-VSLIERN---AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccCCCEEEeCCCc-CceECHH---HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 7777777776653 3333221 45667888888885 666664 456778888888763
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=135.51 Aligned_cols=193 Identities=18% Similarity=0.249 Sum_probs=112.9
Q ss_pred HHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc-ccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE-FLG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~-~~~ 142 (275)
+..+..+++|++|++++|....+ |..+..+++|++|+|++| .+..++. +..++ |++|+++++. +..++.. |..
T Consensus 81 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~ 158 (440)
T 3zyj_A 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR 158 (440)
T ss_dssp TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT
T ss_pred HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhh
Confidence 35677788888888888876664 456778888888888884 5555553 66777 8888888764 5555542 111
Q ss_pred cccccCCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCC
Q 043856 143 IEEISEDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQ 216 (275)
Q Consensus 143 ~~~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~ 216 (275)
...+..+.+.. ......+..+++|+.|+++++ .+..++ .+..+++|+.|++++| +++.+ |..+..
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 229 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-------NLTPLIKLDELDLSGN-HLSAIRPGSFQG 229 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-------CCTTCSSCCEEECTTS-CCCEECTTTTTT
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-------ccCCCcccCEEECCCC-ccCccChhhhcc
Confidence 11111111110 001112334555555555543 222222 1224566666666666 45543 455666
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
+++|++|++++| .+..++.. .+..+++|+.|+++ ++.+|. .+..+++|+.|++++
T Consensus 230 l~~L~~L~L~~n-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 230 LMHLQKLWMIQS-QIQVIERN---AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CTTCCEEECTTC-CCCEECTT---SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CccCCEEECCCC-ceeEEChh---hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 677777776665 33333321 45667888888885 666664 457788888888763
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=129.27 Aligned_cols=175 Identities=23% Similarity=0.227 Sum_probs=135.2
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
.+|..+. ++++.|+++++.... .|..+..+++|++|++++ +.+..++..+.++ |+.|+++++. ++.+|..
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---- 95 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLL---- 95 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECCSCCTTCCEEECCSSC-CSSCCCC----
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCCCCCCcCCEEECCCCc-CCcCchh----
Confidence 3555543 689999999988776 456788999999999998 4566666667788 9999999774 7777654
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccE
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQE 222 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~ 222 (275)
+..+++|+.|+++++. +..++. +.+..+++|+.|++++| +++.+|.. +..+++|+.
T Consensus 96 ----------------~~~l~~L~~L~l~~N~-l~~l~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 96 ----------------GQTLPALTVLDVSFNR-LTSLPL-----GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp ----------------TTTCTTCCEEECCSSC-CCCCCS-----STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ----------------hccCCCCCEEECCCCc-CcccCH-----HHHcCCCCCCEEECCCC-CCCccChhhcccccCCCE
Confidence 4578899999998753 444432 22347899999999998 68887765 467899999
Q ss_pred EEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 223 LSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 223 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|++++| .+..+|.. .+..+++|++|+++ ++.+|.++..+++|+.|++++
T Consensus 153 L~L~~N-~l~~l~~~---~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 153 LSLANN-NLTELPAG---LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp EECTTS-CCSCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred EECCCC-cCCccCHH---HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 999887 56677762 35678999999996 889999888889999998864
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-16 Score=148.66 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c-cccchhhcCCCCccEEEecC
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L-KVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l-~~lp~~l~~L~~L~~L~l~~ 275 (275)
+++|+.|++++|...+.+|. .++.+++|+.|+++ + +.+|..++++++|+.|++++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred cccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 44556666666544445555 56667777777775 3 36777777788888887763
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=135.03 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=114.2
Q ss_pred CCCCeEEecccCCc---ccccccCCCCCCcEEeeec-CCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccC
Q 043856 75 LNVEKLWIIFYGGN---ILPKWLTSLTNLRDLKLVF-CENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 75 ~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~L~~-c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+++.|+++++... .+|..+.++++|++|++++ +.....+| .++.++ |++|+++++.....+|..+.....+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999998876 4899999999999999996 55555666 488899 999999988633366665443332222
Q ss_pred CCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCC-cccEEeEccCcccC-cCccccCCCCCccE
Q 043856 149 DDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMP-RLSSLKVGSCNKLK-ALPDYLLQTTALQE 222 (275)
Q Consensus 149 ~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~-~L~~L~l~~c~~l~-~lp~~l~~l~~L~~ 222 (275)
+.++. ......+..+++|+.|+++++.-...++..+ ..++ +|+.|++++| ++. .+|..+..++ |++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l------~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY------GSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG------GCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH------hhhhhcCcEEECcCC-eeeccCChHHhCCc-ccE
Confidence 22221 1122334445555555555443221222211 1344 5666666655 333 3555555554 666
Q ss_pred EEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 223 LSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 223 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|++++|..-...+. .+..+++|++|+++ +...+..+..+++|++|++++
T Consensus 202 L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 202 VDLSRNMLEGDASV----LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp EECCSSEEEECCGG----GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred EECcCCcccCcCCH----HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence 66665532222232 45667888888885 544444577778888888763
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=130.09 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=122.2
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+..+++|++|++++|....+|. +..+++|++|++++| .+..++.+..++ |+.|++++|. +..++.
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------- 124 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQ-ITDVTP---------- 124 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTSC-CCCCGG----------
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEECCCCC-CCCchh----------
Confidence 46667788888888877666666 778888888888884 456667777777 8888888764 544432
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..++. ...+++|+.|++++| +++.++. +..+++|+.|++++|
T Consensus 125 -----------l~~l~~L~~L~l~~n~-l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 125 -----------LAGLSNLQVLYLDLNQ-ITNISP-------LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp -----------GTTCTTCCEEECCSSC-CCCCGG-------GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred -----------hcCCCCCCEEECCCCc-cCcCcc-------ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC
Confidence 4478889999998763 333332 226889999999988 6888876 788999999999887
Q ss_pred CCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+..++. +..+++|++|+++ +..+| .+..+++|+.|++++
T Consensus 184 -~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 184 -KISDISP-----LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226 (308)
T ss_dssp -CCCCCGG-----GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred -ccCcChh-----hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccC
Confidence 4555543 5678899999996 77776 478899999998863
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-15 Score=124.70 Aligned_cols=176 Identities=24% Similarity=0.318 Sum_probs=131.1
Q ss_pred HHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|..+. ++|++|+++++....+|. .+.++++|++|++++| .+..+|. +..++ |++|+++++. +..++...
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~- 104 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGV- 104 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTT-
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhH-
Confidence 3555443 689999999988777654 6889999999999984 5556664 56788 9999999775 66665431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTAL 220 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L 220 (275)
+..+++|+.|++.++. +..++. ..+..+++|+.|++++| +++.+|.. +..+++|
T Consensus 105 ------------------~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 105 ------------------FDQLVNLAELRLDRNQ-LKSLPP-----RVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSL 159 (270)
T ss_dssp ------------------TTTCSSCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ------------------cccccCCCEEECCCCc-cCeeCH-----HHhCcCcCCCEEECCCC-cCCccCHhHccCCccc
Confidence 3468899999998753 333332 12336899999999998 68887765 6789999
Q ss_pred cEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
++|++++| .+..++.. .+..+++|++|+++ ++.+|. .+..+++|+.|++++
T Consensus 160 ~~L~L~~n-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 160 KELRLYNN-QLKRVPEG---AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CEEECCSS-CCSCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ceeEecCC-cCcEeChh---HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 99999887 45555542 46678999999996 777775 478899999998864
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=125.99 Aligned_cols=173 Identities=17% Similarity=0.203 Sum_probs=109.5
Q ss_pred hcCCCCCCCeEEecccC-Cccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccc
Q 043856 70 ALQPPLNVEKLWIIFYG-GNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~-~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
.+..+++|++|+++++. ...+|. .+..+++|++|++++|+.+..++. +..++ |++|+++++. ++.+|.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~------ 122 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD------ 122 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC------
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc------
Confidence 34455555555555554 333332 344555555555555444444442 33455 5555555443 444432
Q ss_pred cccCCCCCCCCCCCCCCCCCccc---EeeccccccccccccccccccccCCCCccc-EEeEccCcccCcCccccCCCCCc
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLK---SLEIKELDLLEEWNYRITRKENISIMPRLS-SLKVGSCNKLKALPDYLLQTTAL 220 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~-~L~l~~c~~l~~lp~~l~~l~~L 220 (275)
+..+++|+ .|++++++.+..++. ..+..+++|+ .|+++++ +++.+|......++|
T Consensus 123 ---------------~~~l~~L~~L~~L~l~~N~~l~~i~~-----~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 123 ---------------LTKVYSTDIFFILEITDNPYMTSIPV-----NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL 181 (239)
T ss_dssp ---------------CTTCCBCCSEEEEEEESCTTCCEECT-----TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred ---------------cccccccccccEEECCCCcchhhcCc-----ccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence 23455555 888887655655553 1233688899 9999887 678888766556889
Q ss_pred cEEEEecCCCCccCCccccccCCCC-Ccccceecc---ccccchhhcCCCCccEEEecC
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDI-PRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l-~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++|++++|+.++.++.. .+..+ ++|+.|+++ ++.+|.. .+++|+.|++++
T Consensus 182 ~~L~L~~n~~l~~i~~~---~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKD---AFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEEECTTCTTCCEECTT---TTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred CEEEcCCCCCcccCCHH---HhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 99999988667777652 45667 899999996 7788865 688888888864
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-16 Score=149.41 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=98.1
Q ss_pred cccccCCCCCCcEEeeecCCCCCc-----------------CCC-CC--Ccc-cceeeccccccccccCccccccccccC
Q 043856 90 LPKWLTSLTNLRDLKLVFCENCEH-----------------LPP-LG--KLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 90 lp~~l~~l~~L~~L~L~~c~~~~~-----------------lp~-l~--~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
+|.+++++++|++|++++|..... +|. ++ .++ |++|++++|.....+|..
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~--------- 268 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF--------- 268 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT---------
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH---------
Confidence 677788888888888888653332 664 66 788 888888888766666655
Q ss_pred CCCCCCCCCCCCCCCCcccEeecccccccc--ccccccccccccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEEE
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLE--EWNYRITRKENISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQELS 224 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~--~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~ 224 (275)
+..+++|+.|+++++..+. .+|..++.-.....+++|+.|++++| +++.+|. .++++++|++|+
T Consensus 269 -----------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 269 -----------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp -----------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEE
T ss_pred -----------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEe
Confidence 4467778888877765333 24432221000112367777777776 5667776 677777777777
Q ss_pred EecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC-ccEEEec
Q 043856 225 IYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM-LQELSIS 274 (275)
Q Consensus 225 l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~-L~~L~l~ 274 (275)
+++|..-..+| .+..+++|++|+++ +..+|..+..+++ |+.|+++
T Consensus 337 L~~N~l~g~ip-----~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 337 CLYNQLEGKLP-----AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp CCSCCCEEECC-----CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred CcCCcCccchh-----hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc
Confidence 77664322454 13445555555554 4455555555555 5555554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=133.36 Aligned_cols=175 Identities=19% Similarity=0.272 Sum_probs=128.2
Q ss_pred HHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc-ccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE-FLG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~-~~~ 142 (275)
+..+..+++|++|++++|....+|. .+..+++|++|++++| .+..++. +..++ |+.|++++++.+..++.. |.+
T Consensus 105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 183 (440)
T 3zyj_A 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183 (440)
T ss_dssp GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc
Confidence 4678889999999999998777665 6789999999999994 4555553 67788 999999988777777654 333
Q ss_pred cccccCCCCCC--CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCC
Q 043856 143 IEEISEDDPSS--SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTA 219 (275)
Q Consensus 143 ~~~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~ 219 (275)
...+..+.++. ....+.+..+++|+.|+++++. +..+.. ..+..+++|+.|++.+| +++.+ |..+..+++
T Consensus 184 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRP-----GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQS 256 (440)
T ss_dssp CSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC-CCEECT-----TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTT
T ss_pred ccccCeecCCCCcCccccccCCCcccCEEECCCCc-cCccCh-----hhhccCccCCEEECCCC-ceeEEChhhhcCCCC
Confidence 33333333321 1122346778899999999873 444431 23347899999999998 67775 556888999
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|+.|++++| .+..++.. .+..+++|+.|+++
T Consensus 257 L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 257 LVEINLAHN-NLTLLPHD---LFTPLHHLERIHLH 287 (440)
T ss_dssp CCEEECTTS-CCCCCCTT---TTSSCTTCCEEECC
T ss_pred CCEEECCCC-CCCccChh---HhccccCCCEEEcC
Confidence 999999997 56666652 45678999999995
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-16 Score=151.03 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=121.6
Q ss_pred HHHhcCCCCCCCeEEecccCCcc------------------cccccC--CCCCCcEEeeecCCCCCcCCC-CCCcc-cce
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNI------------------LPKWLT--SLTNLRDLKLVFCENCEHLPP-LGKLP-LEK 124 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~------------------lp~~l~--~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~ 124 (275)
+|..++.+++|++|++++|.... +|..++ ++++|++|++++|.....+|. ++.++ |+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78899999999999999998887 899988 999999999999888888884 88899 999
Q ss_pred eecccccccc--ccCccccccc-------cccCCCCCC---CCCCC--CCCCCCcccEeecccccccccccccccccccc
Q 043856 125 LELRDLKSVK--RVGNEFLGIE-------EISEDDPSS---SSSSS--SVTAFPKLKSLEIKELDLLEEWNYRITRKENI 190 (275)
Q Consensus 125 L~l~~~~~l~--~l~~~~~~~~-------~~~~~~~~~---~~~~~--~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~ 190 (275)
|+++++..+. .+|..+.... .+..+.++. ..... .+..+++|+.|+++++. +..++ .+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-------~~ 591 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-------AF 591 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-------CC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-------hh
Confidence 9999886344 3665443221 111111111 01122 34556666666666543 22332 12
Q ss_pred CCCCcccEEeEccCcccCcCccccCCCCC-ccEEEEecCCCCccCCccccccCCCC--Ccccceecc---cc----ccch
Q 043856 191 SIMPRLSSLKVGSCNKLKALPDYLLQTTA-LQELSIYSCENLEELPIPEDRRTTDI--PRLSSLRIG---LK----VLPD 260 (275)
Q Consensus 191 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~l--~~L~~L~l~---l~----~lp~ 260 (275)
..+++|+.|++++| ++..+|..+..+++ |+.|++++|. +..+|. .+..+ ++|+.|+++ +. .+|.
T Consensus 592 ~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~----~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 592 GTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPN----IFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp CTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCS----CCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred cCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCch----hhhccccCCCCEEECcCCcCCCccccchh
Confidence 25666667777666 45566666666666 7777766653 445554 33333 336666664 22 1222
Q ss_pred hhc--CCCCccEEEec
Q 043856 261 YLL--RTTMLQELSIS 274 (275)
Q Consensus 261 ~l~--~L~~L~~L~l~ 274 (275)
.++ .+++|+.|+++
T Consensus 666 ~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 666 SMDDYKGINASTVTLS 681 (876)
T ss_dssp CTTTCCCCCEEEEECC
T ss_pred hhccccCCCcCEEEcc
Confidence 222 23467777765
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-16 Score=149.48 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=145.0
Q ss_pred HHHhcCCCCCCCeEEecccCCcc------------------cccccC--CCCCCcEEeeecCCCCCcCCC-CCCcc-cce
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNI------------------LPKWLT--SLTNLRDLKLVFCENCEHLPP-LGKLP-LEK 124 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~------------------lp~~l~--~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~ 124 (275)
+|..++.+++|++|++++|.... +|..++ ++++|++|++++|.....+|. ++.++ |+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 78899999999999999999888 899999 999999999999888888884 88899 999
Q ss_pred eecccccccc--ccCcccccc------ccccCCCCCC---CCCCC--CCCCCCcccEeeccccccccccccccccccccC
Q 043856 125 LELRDLKSVK--RVGNEFLGI------EEISEDDPSS---SSSSS--SVTAFPKLKSLEIKELDLLEEWNYRITRKENIS 191 (275)
Q Consensus 125 L~l~~~~~l~--~l~~~~~~~------~~~~~~~~~~---~~~~~--~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~ 191 (275)
|+++++..+. .+|..+... ..+..+.++. ..... .+..+++|+.|+++++.-...++ .+ .
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~------~ 350 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF------G 350 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC------E
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh------C
Confidence 9999886344 466554332 2222222221 12223 46678888888888764322444 12 2
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCC-ccEEEEecCCCCccCCccccccCCC--CCcccceecc---c-cccchhhc-
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTA-LQELSIYSCENLEELPIPEDRRTTD--IPRLSSLRIG---L-KVLPDYLL- 263 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~--l~~L~~L~l~---l-~~lp~~l~- 263 (275)
.+++|+.|++++| +++.+|..+..+++ |++|++++|. +..+|. .+.. +++|++|+++ + +.+|..+.
T Consensus 351 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 351 SEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPN----IFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp EEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCS----CCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred CCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-Ccccch----hhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 5788999999888 67788888888998 9999998874 557776 3444 4489999996 3 34566677
Q ss_pred ------CCCCccEEEecC
Q 043856 264 ------RTTMLQELSISE 275 (275)
Q Consensus 264 ------~L~~L~~L~l~~ 275 (275)
.+++|+.|++++
T Consensus 425 ~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSN 442 (636)
T ss_dssp TCSSCCCCCCEEEEECCS
T ss_pred cccccccCCCCCEEECcC
Confidence 778999998864
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=132.19 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=128.8
Q ss_pred HHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc-ccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE-FLG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~-~~~ 142 (275)
+..+..+++|++|++++|....+|. .+..+++|++|++++| .+..+|. +..++ |+.|++++|+.++.++.. +.+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 4678889999999999998777665 4778999999999995 4556654 77888 999999988888888764 333
Q ss_pred cccccCCCCCC--CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCC
Q 043856 143 IEEISEDDPSS--SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTA 219 (275)
Q Consensus 143 ~~~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~ 219 (275)
...+..+.++. ....+.+..+++|+.|+++++. +..+.. ..+..+++|+.|++++| ++..+ |..+..+++
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH-FPEIRP-----GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLAS 267 (452)
T ss_dssp CTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC-CSEECG-----GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCcccccccccccccccEEECcCCc-CcccCc-----ccccCccCCCEEEeCCC-cCceECHHHhcCCCC
Confidence 33333333221 1122456778999999999864 333321 12337899999999998 67765 567888999
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|+.|++++| .+..++.. .+..+++|+.|+++
T Consensus 268 L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 268 LVELNLAHN-NLSSLPHD---LFTPLRYLVELHLH 298 (452)
T ss_dssp CCEEECCSS-CCSCCCTT---SSTTCTTCCEEECC
T ss_pred CCEEECCCC-cCCccChH---HhccccCCCEEEcc
Confidence 999999998 56666652 45678999999995
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=122.81 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=135.2
Q ss_pred HHHhcCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcC-C-CCCCcc-cceeeccccccccccCccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHL-P-PLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~l-p-~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
+|..+ .++|++|+++++....+| ..+..+++|++|++++| .+..+ | .+..++ |++|+++++..++.++...
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-- 100 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-- 100 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT--
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH--
Confidence 45443 469999999999887755 56889999999999996 44444 3 477889 9999999886566664321
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCcc
Q 043856 143 IEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQ 221 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~ 221 (275)
+..+++|+.|++.++. +..++. ..+..+++|+.|++++| .++.+|.. +..+++|+
T Consensus 101 -----------------~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 101 -----------------FHGLGRLHTLHLDRCG-LQELGP-----GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLT 156 (285)
T ss_dssp -----------------TTTCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred -----------------hcCCcCCCEEECCCCc-CCEECH-----hHhhCCcCCCEEECCCC-cccccCHhHhccCCCcc
Confidence 4578999999999865 333321 12336899999999998 68887654 78899999
Q ss_pred EEEEecCCCCccCCccccccCCCCCcccceecc---cccc-chhhcCCCCccEEEecC
Q 043856 222 ELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRTTMLQELSISE 275 (275)
Q Consensus 222 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L~~L~~L~l~~ 275 (275)
+|++++| .+..++.. .+..+++|++|+++ +..+ |..+..+++|+.|++++
T Consensus 157 ~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 157 HLFLHGN-RISSVPER---AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp EEECCSS-CCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCC-cccccCHH---HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 9999987 56666652 46779999999996 5555 78899999999999874
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=130.36 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=43.4
Q ss_pred CCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~ 267 (275)
.+++|+.|++++| .++.+ |..+..+++|++|++++| .+..++. ....+++|++|+++ +..+|..++.+++
T Consensus 246 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 246 NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL----YGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEEC----SSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred CCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCc----ccCCCCCCCEEECCCCcceecCccccccCc
Confidence 3556666666665 34443 445556666666666655 3444443 33456666666664 5566655555666
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.|+++
T Consensus 320 L~~L~L~ 326 (390)
T 3o6n_A 320 LENLYLD 326 (390)
T ss_dssp CSEEECC
T ss_pred CCEEECC
Confidence 6666654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=147.43 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=100.1
Q ss_pred cccccCCCCCCcEEeeecCCCCC-----------------cCCC-CC--Ccc-cceeeccccccccccCccccccccccC
Q 043856 90 LPKWLTSLTNLRDLKLVFCENCE-----------------HLPP-LG--KLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 90 lp~~l~~l~~L~~L~L~~c~~~~-----------------~lp~-l~--~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
+|..++++++|++|+|++|.... .+|. ++ .++ |+.|++++|.....+|..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~--------- 510 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF--------- 510 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG---------
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH---------
Confidence 78888999999999999965444 1774 66 899 999999998877778866
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccc--ccccccccc-ccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEE
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKE-NISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQEL 223 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~-~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L 223 (275)
+..+++|+.|+++++..+.. +|..++... ....+++|+.|++++| ++..+|. .++++++|+.|
T Consensus 511 -----------l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 511 -----------LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLL 578 (876)
T ss_dssp -----------GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEE
T ss_pred -----------HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEE
Confidence 44677777777776652322 332221110 1224556666666666 4556666 66666666666
Q ss_pred EEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC-ccEEEec
Q 043856 224 SIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM-LQELSIS 274 (275)
Q Consensus 224 ~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~-L~~L~l~ 274 (275)
++++|. +..+| .+..+++|+.|+++ +..+|..+..+++ |+.|+++
T Consensus 579 ~Ls~N~-l~~lp-----~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 579 DCVHNK-VRHLE-----AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp ECTTSC-CCBCC-----CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred ECCCCC-cccch-----hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc
Confidence 666653 33444 24455666666664 4555655555655 6666554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=139.77 Aligned_cols=193 Identities=17% Similarity=0.129 Sum_probs=118.1
Q ss_pred hcCCCCCCCeEEecccCCccc---ccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCc--cccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNIL---PKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGN--EFLG 142 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~--~~~~ 142 (275)
.+..+++|++|++++|..... |..+..+++|++|++++|. +..+| .+..++ |+.|+++++. +..++. .+..
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 422 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLS 422 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSE-EESTTTTTTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCc-cCCccChhhhhc
Confidence 445566677777766654432 5555566666666666643 22233 355556 6666666554 322221 2222
Q ss_pred cccccCCCCCC----CCCCCCCCCCCcccEeeccccccccc-cccccccccccCCCCcccEEeEccCcccCc-CccccCC
Q 043856 143 IEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEE-WNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQ 216 (275)
Q Consensus 143 ~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~-l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~ 216 (275)
...+..+.++. ......+..+++|+.|++.++.-... .+. .+..+++|+.|++++| +++. .|..+..
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 495 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN------VFANTTNLTFLDLSKC-QLEQISWGVFDT 495 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS------CCTTCTTCCEEECTTS-CCCEECTTTTTT
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH------hhccCCCCCEEECCCC-cCCccChhhhcc
Confidence 22111111111 01122355778888888887653321 222 2336889999999998 5665 4566888
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCC-CccEEEecC
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTT-MLQELSISE 275 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~-~L~~L~l~~ 275 (275)
+++|++|++++|+.....|. .+..+++|++|+++ ++.+|..+..++ +|+.|++++
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSS----HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGG----GTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred cccCCEEECCCCcCCCcCHH----HccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 99999999998854433354 67788999999996 888888888886 599998864
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=131.30 Aligned_cols=198 Identities=18% Similarity=0.182 Sum_probs=104.9
Q ss_pred HHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeecccccccccc-Cccccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRV-GNEFLG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l-~~~~~~ 142 (275)
+..+..+++|++|++++|.... .|..+.++++|++|++++| .+..+|. +..++ |++|+++++. +..+ +..+..
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~ 126 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQD 126 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc-cccCChhHccc
Confidence 4567788888888888887666 4777888888888888884 4555653 56778 8888888765 4443 333322
Q ss_pred cccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCC
Q 043856 143 IEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQT 217 (275)
Q Consensus 143 ~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l 217 (275)
...+..+.+.. ......+..+++|+.|++.++. +..++. ..+..+++|+.|++.++ .+..++ ..+..+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l 199 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPT-----EALSHLHGLIVLRLRHL-NINAIRDYSFKRL 199 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCH-----HHHTTCTTCCEEEEESC-CCCEECTTCSCSC
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccCh-----hHhcccCCCcEEeCCCC-cCcEeChhhcccC
Confidence 22222221111 0112234556677777766542 222221 01113445555555444 233322 234444
Q ss_pred CCccEEEEecCCCCccCCcccc--------------------ccCCCCCcccceecc---ccccc-hhhcCCCCccEEEe
Q 043856 218 TALQELSIYSCENLEELPIPED--------------------RRTTDIPRLSSLRIG---LKVLP-DYLLRTTMLQELSI 273 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~--------------------~~~~~l~~L~~L~l~---l~~lp-~~l~~L~~L~~L~l 273 (275)
++|+.|++++|+.+..++.... ..+..+++|++|+++ +..++ ..+..+++|+.|++
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEEC
Confidence 5555555555444333332100 023445666666664 44443 24556666666666
Q ss_pred c
Q 043856 274 S 274 (275)
Q Consensus 274 ~ 274 (275)
+
T Consensus 280 ~ 280 (477)
T 2id5_A 280 V 280 (477)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-15 Score=126.27 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCCcccEeecccccccc-ccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCcc
Q 043856 160 VTAFPKLKSLEIKELDLLE-EWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIP 237 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~-~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~ 237 (275)
+..+++|+.|++.++.-.. ..+. .+..+++|+.|++++| +++.+ |..+..+++|++|++++|. +..++..
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 217 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPD------IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF 217 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS------CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG
T ss_pred cccCcCCCEEECCCCccccccchh------HHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChh
Confidence 4567888888887764222 1221 2336888999999888 57665 6677888899999988874 4444432
Q ss_pred ccccCCCCCcccceecc---cc-ccchhhcCC-CCccEEEecC
Q 043856 238 EDRRTTDIPRLSSLRIG---LK-VLPDYLLRT-TMLQELSISE 275 (275)
Q Consensus 238 ~~~~~~~l~~L~~L~l~---l~-~lp~~l~~L-~~L~~L~l~~ 275 (275)
.+..+++|++|+++ +. ..|..+..+ ++|+.|++++
T Consensus 218 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 218 ---PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp ---GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred ---hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 45678889999986 44 345667777 4889888864
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=136.63 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=48.6
Q ss_pred CCCcccEEeEccCcccCc-CccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~ 267 (275)
.+++|+.|++++| .+.. .|..++.+++|+.|++++| .+..+|. .+..+++|++|+++ +..+|..++.+++
T Consensus 252 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~ 325 (597)
T 3oja_B 252 NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL----YGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325 (597)
T ss_dssp GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCEEEC----SSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred cCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCCCCc----ccccCCCCcEEECCCCCCCccCcccccCCC
Confidence 4566666666666 3444 3556666777777777665 4444544 34556777777775 6667766666666
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.|+++
T Consensus 326 L~~L~L~ 332 (597)
T 3oja_B 326 LENLYLD 332 (597)
T ss_dssp CSEEECC
T ss_pred CCEEECC
Confidence 6666665
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=128.26 Aligned_cols=101 Identities=23% Similarity=0.299 Sum_probs=75.6
Q ss_pred CCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccc
Q 043856 161 TAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDR 240 (275)
Q Consensus 161 ~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 240 (275)
..+++|+.|+++++. +.... ...+..+++|+.|++++| +++.+|..+..+++|++|++++| .+..+|.
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---- 312 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNE-LEKIM-----YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER---- 312 (390)
T ss_dssp GGCTTCSEEECCSSC-CCEEE-----SGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG----
T ss_pred cCCCCccEEECCCCc-CCCcC-----hhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc----
Confidence 345556666665543 22221 112347899999999998 78889888888999999999998 5667776
Q ss_pred cCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 241 RTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 241 ~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+..+++|++|+++ +..+| +..+++|+.|++++
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred cccccCcCCEEECCCCccceeC--chhhccCCEEEcCC
Confidence 45678999999996 77776 77899999999874
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-14 Score=120.81 Aligned_cols=170 Identities=23% Similarity=0.253 Sum_probs=114.6
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
.+++|+.|.++++....++ .+..+++|++|++++| .+..++.+..++ |++|+++++. ++.++...
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~----------- 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQ-LQSLPNGV----------- 104 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSC-CCCCCTTT-----------
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCccChhH-----------
Confidence 3567888888877655443 4677888888888884 455566777788 8888888764 55554331
Q ss_pred CCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCC
Q 043856 152 SSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCEN 230 (275)
Q Consensus 152 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~ 230 (275)
+..+++|+.|++.++. +..++. ..+..+++|+.|++++| +++.+|.. +..+++|++|++++| .
T Consensus 105 --------~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~ 168 (272)
T 3rfs_A 105 --------FDKLTNLKELVLVENQ-LQSLPD-----GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-Q 168 (272)
T ss_dssp --------TTTCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred --------hcCCcCCCEEECCCCc-CCccCH-----HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-C
Confidence 3467788888887754 333332 11235788888888887 67776654 467888888888877 4
Q ss_pred CccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 231 LEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 231 l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
+..++.. .+..+++|++|+++ +..+|. .++.+++|+.|++++
T Consensus 169 l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 169 LQSLPEG---VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCccCHH---HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 5555541 34667888888885 555554 467788888888753
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=126.27 Aligned_cols=185 Identities=19% Similarity=0.264 Sum_probs=109.2
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+..+++|++|++++|....+|. +..+++|++|++++| .+..++.+..++ |++|+++++. +..++. +.....+..
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDN-ISDISP-LANLTKMYS 136 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCc-ccCchh-hccCCceeE
Confidence 35667788888888877666665 778888888888874 555666677777 8888887664 444432 211111111
Q ss_pred CCCCC---CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEE
Q 043856 149 DDPSS---SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSI 225 (275)
Q Consensus 149 ~~~~~---~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 225 (275)
+.+.. ......+..+++|+.|++.++. +..++. +..+++|+.|++++| .+..++. +..+++|+.|++
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-------IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTA 206 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEEC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-------hccCCCCCEEEccCC-ccccccc-ccCCCccceeec
Confidence 11110 0111123345555555555433 111111 124666666666666 4555554 556667777776
Q ss_pred ecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 226 YSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 226 ~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++| .+..++. +..+++|++|+++ +..+|. +..+++|++|++++
T Consensus 207 ~~n-~l~~~~~-----~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 207 YVN-QITDITP-----VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp CSS-CCCCCGG-----GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred ccC-CCCCCch-----hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCC
Confidence 665 3333322 4568888998886 677765 78889999998864
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-15 Score=126.72 Aligned_cols=173 Identities=22% Similarity=0.250 Sum_probs=111.7
Q ss_pred cCCCCCCCeEEecccCCccc---ccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNIL---PKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEE 145 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~ 145 (275)
+..+++|++|+++++..... |..+..+++|++|++++| .+..+| .+..++ |++|+++++. +..++.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~------- 118 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSE------- 118 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE-EESSTT-------
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCc-cccccc-------
Confidence 34555566666555544322 333445555666665553 222333 244455 6666665543 333332
Q ss_pred ccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc--CccccCCCCCccEE
Q 043856 146 ISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQEL 223 (275)
Q Consensus 146 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L 223 (275)
...+..+++|+.|+++++.-....+. .+..+++|+.|++++| .+.. +|..+..+++|++|
T Consensus 119 -----------~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 119 -----------FSVFLSLRNLIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp -----------TTTTTTCTTCCEEECTTSCCEECSTT------TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEE
T ss_pred -----------chhhhhccCCCEEECCCCcCCccchh------hcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEE
Confidence 11255788999999987653222221 2336899999999998 5654 78889999999999
Q ss_pred EEecCCCCccC-CccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 224 SIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 224 ~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
++++|. +..+ +. .+..+++|++|+++ +..+|. .+..+++|+.|++++
T Consensus 181 ~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 181 DLSQCQ-LEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp ECTTSC-CCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred ECCCCC-cCCcCHH----HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 999984 4554 44 57789999999996 666654 678899999999874
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=125.13 Aligned_cols=188 Identities=17% Similarity=0.256 Sum_probs=97.6
Q ss_pred hcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcc-ccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNE-FLGIEEI 146 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~-~~~~~~~ 146 (275)
.+..+++|++|++++|....+ |..+..+++|++|++++| .+..+|.- ..+ |++|+++++. +..++.. +.....+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChh-hcccccEEECCCCc-ccccCHhHhcCCccc
Confidence 456666777777766665553 566666777777777663 34444431 114 6666665543 3333322 1111111
Q ss_pred cCCCCCCC------CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCC
Q 043856 147 SEDDPSSS------SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTA 219 (275)
Q Consensus 147 ~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~ 219 (275)
..+.++.. .....+..+++|+.|++.++. +..++.. .+++|+.|++++| +++.+ |..+..+++
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~--------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG--------LPPSLTELHLDGN-KITKVDAASLKGLNN 217 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS--------CCTTCSEEECTTS-CCCEECTGGGTTCTT
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc--------ccccCCEEECCCC-cCCccCHHHhcCCCC
Confidence 11111100 111223445666666665532 2222210 2356666666666 45543 455666677
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
|++|++++|. +..++.. .+..+++|++|+++ +..+|.++..+++|++|+++
T Consensus 218 L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 218 LAKLGLSFNS-ISAVDNG---SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp CCEEECCSSC-CCEECTT---TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred CCEEECCCCc-CceeChh---hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 7777776653 3333321 34556677777775 66677667777777777765
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=125.23 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=131.1
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+++|++|+++++....+| .+..+++|++|++++| .+..++.+..++ |++|+++++. ++.++ .
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~-~------------- 102 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVS-A------------- 102 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCG-G-------------
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCCch-h-------------
Confidence 568999999999877776 5889999999999995 566676688899 9999999875 66553 2
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCc
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..+++|+.|+++++. +..++. +..+++|+.|++++| .++.++. +..+++|+.|++++| .+.
T Consensus 103 -------~~~l~~L~~L~l~~n~-l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~ 164 (308)
T 1h6u_A 103 -------IAGLQSIKTLDLTSTQ-ITDVTP-------LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVS 164 (308)
T ss_dssp -------GTTCTTCCEEECTTSC-CCCCGG-------GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCC
T ss_pred -------hcCCCCCCEEECCCCC-CCCchh-------hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCC
Confidence 5578999999999864 444432 337999999999998 7888876 888999999999998 555
Q ss_pred cCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 233 ELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.++. +..+++|+.|+++ ++.+|. +..+++|+.|++++
T Consensus 165 ~~~~-----l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 165 DLTP-----LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKN 204 (308)
T ss_dssp CCGG-----GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTT
T ss_pred CChh-----hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccC
Confidence 5543 6679999999996 777775 88999999999874
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-15 Score=130.15 Aligned_cols=196 Identities=22% Similarity=0.274 Sum_probs=108.4
Q ss_pred hcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCc--ccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGN--EFLGI 143 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~--~~~~~ 143 (275)
.+..+++|++|++++|....+ |..+.++++|++|++++| .+..+|. ++.++ |++|+++++. ++.++. .+...
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccC
Confidence 678888999999988876664 566888899999999884 5556664 67788 8888888764 666654 21111
Q ss_pred ccccCCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcccc-CCC
Q 043856 144 EEISEDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYL-LQT 217 (275)
Q Consensus 144 ~~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l 217 (275)
..+..+.++. ......+..+++|+.|+++++. +.... ...+..+++|+.|++++| +++.+|..+ ..+
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 221 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYE-----PKSLKSIQNVSHLILHMK-QHILLLEIFVDVT 221 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEEC-----TTTTTTCSEEEEEEEECS-CSTTHHHHHHHHT
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccC-----HHHHhccccCCeecCCCC-ccccchhhhhhhc
Confidence 1111100000 0001112334444444444332 11110 011224555555555555 344444322 235
Q ss_pred CCccEEEEecCCCCccCCcccc----------------------------ccCCCCCcccceecc---ccccchhh-cCC
Q 043856 218 TALQELSIYSCENLEELPIPED----------------------------RRTTDIPRLSSLRIG---LKVLPDYL-LRT 265 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~----------------------------~~~~~l~~L~~L~l~---l~~lp~~l-~~L 265 (275)
++|++|++++|. +..++.... ..+..+++|++|+++ ++.+|..+ +.+
T Consensus 222 ~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l 300 (353)
T 2z80_A 222 SSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300 (353)
T ss_dssp TTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC
Confidence 666666666653 222221100 013457788888886 77888764 788
Q ss_pred CCccEEEecC
Q 043856 266 TMLQELSISE 275 (275)
Q Consensus 266 ~~L~~L~l~~ 275 (275)
++|++|++++
T Consensus 301 ~~L~~L~L~~ 310 (353)
T 2z80_A 301 TSLQKIWLHT 310 (353)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEEeeC
Confidence 8899888864
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-14 Score=123.46 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc-ccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK-VLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~-~lp~~l~~L~~ 267 (275)
.+++|+.|++++| .++.++ .+..+++|++|++++| .+..++ .+..+++|++|+++ +. ..|..++.+++
T Consensus 241 ~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 241 NLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp TCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred cCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 4555555555555 444443 3455566666666555 333332 24556777777775 33 33456777777
Q ss_pred ccEEEecC
Q 043856 268 LQELSISE 275 (275)
Q Consensus 268 L~~L~l~~ 275 (275)
|+.|++++
T Consensus 313 L~~L~L~~ 320 (347)
T 4fmz_A 313 LTTLFLSQ 320 (347)
T ss_dssp CSEEECCS
T ss_pred CCEEEccC
Confidence 77777753
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-15 Score=128.90 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=125.2
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCcc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
...+|..+. ++|++|+++++....+|. .+.++++|++|++++| .+..++ .+..++ |++|+++++. ++.++..
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSS 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHh
Confidence 344666654 489999999998877665 7889999999999996 455443 378889 9999999875 7777655
Q ss_pred -ccccccccCCCCCCC---CC-C-CCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-Ccc
Q 043856 140 -FLGIEEISEDDPSSS---SS-S-SSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPD 212 (275)
Q Consensus 140 -~~~~~~~~~~~~~~~---~~-~-~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~ 212 (275)
+.....+..+.++.. .. . ..+..+++|+.|++.++..+..++. ..+..+++|+.|++++| .+.. .|.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~ 192 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----KDFAGLTFLEELEIDAS-DLQSYEPK 192 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEET-TCCEECTT
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-----HHccCCCCCCEEECCCC-CcCccCHH
Confidence 333333332222211 11 1 2355677777777776654444331 12235777777777777 4554 366
Q ss_pred ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc--------------------------------c
Q 043856 213 YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK--------------------------------V 257 (275)
Q Consensus 213 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~--------------------------------~ 257 (275)
.+..+++|++|++++|. +..++.. .+..+++|++|+++ ++ .
T Consensus 193 ~l~~l~~L~~L~l~~n~-l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQ-HILLLEI---FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp TTTTCSEEEEEEEECSC-STTHHHH---HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred HHhccccCCeecCCCCc-cccchhh---hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 67777777777777763 3444331 11235566666553 22 3
Q ss_pred cchhhcCCCCccEEEecC
Q 043856 258 LPDYLLRTTMLQELSISE 275 (275)
Q Consensus 258 lp~~l~~L~~L~~L~l~~ 275 (275)
+|.++..+++|+.|++++
T Consensus 269 l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSR 286 (353)
T ss_dssp HHHHHHTCTTCCEEECCS
T ss_pred hHHHHhcccCCCEEECCC
Confidence 566677888888888864
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=123.23 Aligned_cols=160 Identities=23% Similarity=0.278 Sum_probs=91.9
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+++|++|+++++....+| .+..+++|++|++++| .+..++.+..++ |++|+++++. +..++.
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-------------- 107 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSS-------------- 107 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGG--------------
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChh--------------
Confidence 456777777766655554 3566777777777763 444455566666 7777777653 444331
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCc
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..+++|+.|+++++. +..++ ....+++|+.|++++| +++.+ ..+..+++|+.|++++| .+.
T Consensus 108 -------l~~l~~L~~L~L~~n~-i~~~~-------~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~ 169 (291)
T 1h6t_A 108 -------LKDLKKLKSLSLEHNG-ISDIN-------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QIS 169 (291)
T ss_dssp -------GTTCTTCCEEECTTSC-CCCCG-------GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCC
T ss_pred -------hccCCCCCEEECCCCc-CCCCh-------hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-ccc
Confidence 3356666666666542 32222 1124666666666666 45555 34556666666666665 333
Q ss_pred cCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 233 ELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
.++. +..+++|+.|+++ ++.+| .+..+++|+.|+++
T Consensus 170 ~~~~-----l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 170 DIVP-----LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF 208 (291)
T ss_dssp CCGG-----GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred cchh-----hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECc
Confidence 3332 4456666666664 55555 35666666666654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-14 Score=128.12 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=51.2
Q ss_pred CCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc---ccccch-hhcCC
Q 043856 192 IMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRT 265 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L 265 (275)
.+++|+.|++++| +++.+ |..+..+++|++|++++|. +..+ |. .+..+++|++|+++ ++.+|. .+..+
T Consensus 321 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 321 GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQ----SFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChh----hccccccccEEECCCCccccCCHhHhccC
Confidence 4666777777666 45554 4456667777777777663 3333 33 56677888888885 666665 45778
Q ss_pred CCccEEEecC
Q 043856 266 TMLQELSISE 275 (275)
Q Consensus 266 ~~L~~L~l~~ 275 (275)
++|++|++++
T Consensus 395 ~~L~~L~l~~ 404 (455)
T 3v47_A 395 TSLQKIWLHT 404 (455)
T ss_dssp TTCCEEECCS
T ss_pred CcccEEEccC
Confidence 8888888763
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=134.77 Aligned_cols=196 Identities=20% Similarity=0.146 Sum_probs=140.0
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCc--CC-CCCCcc-cceeeccccccccccCccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEH--LP-PLGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~--lp-~l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
..+| .+ .+++|++|++++|.... +..+..+++|++|++++|..... +| .+..++ |++|++++|. +..+|..+
T Consensus 320 ~~lp-~~-~l~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~ 395 (606)
T 3vq2_A 320 KQFP-TL-DLPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANF 395 (606)
T ss_dssp SSCC-CC-CCSSCCEEEEESCSSCE-ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCC
T ss_pred cccc-cC-CCCccceeeccCCcCcc-chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhc
Confidence 3455 45 88999999999986553 33567999999999999643222 13 356788 9999999876 77777555
Q ss_pred cccccccCCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc--Cccc
Q 043856 141 LGIEEISEDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDY 213 (275)
Q Consensus 141 ~~~~~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~ 213 (275)
.....+..+.++. ......+..+++|+.|+++++.-....+. .+..+++|+.|++++| .+.. +|..
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~ 468 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG------IFLGLTSLNTLKMAGN-SFKDNTLSNV 468 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT------TTTTCTTCCEEECTTC-EEGGGEECSC
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh------hhcCCCCCCEEECCCC-cCCCcchHHh
Confidence 5444443333331 11113566788889998887763332322 2337899999999998 4654 6888
Q ss_pred cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cccc-chhhcCCCCccEEEecC
Q 043856 214 LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRTTMLQELSISE 275 (275)
Q Consensus 214 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L~~L~~L~l~~ 275 (275)
+..+++|++|++++|......|. .+..+++|++|+++ +..+ |..++++++|+.|++++
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWG----VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred hccCCCCCEEECCCCcCCccChh----hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 89999999999999854333344 57789999999996 5554 78899999999999874
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=118.07 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=132.1
Q ss_pred CCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCCC
Q 043856 75 LNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDD 150 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (275)
++|++|+++++....+|. .+..+++|++|++++|..++.++. +..++ |++|++++|+.++.++...
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~---------- 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA---------- 100 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS----------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH----------
Confidence 489999999998877665 788999999999999765777763 67888 9999999866688877532
Q ss_pred CCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCccc---EEeEccCcccCcCccc-cCCCCCcc-EEEE
Q 043856 151 PSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLS---SLKVGSCNKLKALPDY-LLQTTALQ-ELSI 225 (275)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~---~L~l~~c~~l~~lp~~-l~~l~~L~-~L~l 225 (275)
+..+++|+.|++.++. +..++. +..+++|+ .|++++|++++.+|.. +..+++|+ +|++
T Consensus 101 ---------f~~l~~L~~L~l~~n~-l~~lp~-------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 101 ---------LKELPLLKFLGIFNTG-LKMFPD-------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp ---------EECCTTCCEEEEEEEC-CCSCCC-------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred ---------hCCCCCCCEEeCCCCC-Cccccc-------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 3478999999998764 444442 22566776 9999998778888754 78899999 9999
Q ss_pred ecCCCCccCCccccccCCCCCcccceecc----ccccc-hhhcCC-CCccEEEecC
Q 043856 226 YSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLP-DYLLRT-TMLQELSISE 275 (275)
Q Consensus 226 ~~c~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp-~~l~~L-~~L~~L~l~~ 275 (275)
++| .+..+|. .....++|++|+++ ++.+| ..+..+ ++|+.|++++
T Consensus 164 ~~n-~l~~i~~----~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 164 YNN-GFTSVQG----YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CSC-CCCEECT----TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CCC-CCcccCH----hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 987 5667776 33334899999995 66775 467888 9999999874
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=125.08 Aligned_cols=189 Identities=18% Similarity=0.168 Sum_probs=115.1
Q ss_pred CCCCCCeEEecccCCcc-ccccc--CCCCCCcEEeeecCCCCCcCCC-CCCc-----c-cceeeccccccccccC-cccc
Q 043856 73 PPLNVEKLWIIFYGGNI-LPKWL--TSLTNLRDLKLVFCENCEHLPP-LGKL-----P-LEKLELRDLKSVKRVG-NEFL 141 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~-lp~~l--~~l~~L~~L~L~~c~~~~~lp~-l~~L-----~-L~~L~l~~~~~l~~l~-~~~~ 141 (275)
.+++|++|++++|.... +|..+ ..+++|++|++++|. +..+|. ++.+ + |++|+++++. +..++ ..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 57788888888887664 67765 788888888888853 443343 3334 6 8888888665 55554 3332
Q ss_pred ccccccCCCCCCCCC------CCC--CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc--
Q 043856 142 GIEEISEDDPSSSSS------SSS--VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-- 211 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~------~~~--l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-- 211 (275)
....+..+.++.... ... ...+++|+.|+++++. +..++. + .......+++|+.|++++| +++..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 246 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSG-V-CSALAAARVQLQGLDLSHN-SLRDAAGA 246 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHH-H-HHHHHHTTCCCSEEECTTS-CCCSSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHH-H-HHHHHhcCCCCCEEECCCC-cCCcccch
Confidence 222222222221110 001 1456777777776653 221111 0 0001114678888888887 566643
Q ss_pred cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 212 DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 212 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
..+..+++|++|++++| .++.+|. .+. ++|++|+++ ++.+|. +..+++|++|++++
T Consensus 247 ~~~~~l~~L~~L~Ls~N-~l~~ip~----~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFT-GLKQVPK----GLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SCCCCCTTCCEEECTTS-CCSSCCS----SCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred hhhhhcCCCCEEECCCC-ccChhhh----hcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence 34556788888888887 4567766 333 788888886 777776 88889999988864
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=114.76 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=102.1
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccc-cCccccccccccCCC
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKR-VGNEFLGIEEISEDD 150 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~-l~~~~~~~~~~~~~~ 150 (275)
.+++|++|+++++....+| .+..+++|++|++++| .+..++.+..++ |++|+++++. +.. .+..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~----------- 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPN----------- 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCC-----------
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChh-----------
Confidence 3568899999888777677 6788899999999986 666777778888 8889888765 443 3322
Q ss_pred CCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCC
Q 043856 151 PSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCEN 230 (275)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 230 (275)
+..+++|+.|+++++.-....+. .+..+++|+.|++++|..++.+| .+..+++|++|++++|.
T Consensus 108 ---------l~~l~~L~~L~Ls~n~i~~~~~~------~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~- 170 (197)
T 4ezg_A 108 ---------LSGLTSLTLLDISHSAHDDSILT------KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG- 170 (197)
T ss_dssp ---------CTTCTTCCEEECCSSBCBGGGHH------HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-
T ss_pred ---------hcCCCCCCEEEecCCccCcHhHH------HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-
Confidence 44678888888887643222222 12267888888888885477776 57778888888888773
Q ss_pred CccCCccccccCCCCCcccceecc
Q 043856 231 LEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 231 l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
+..++ .+..+++|++|+++
T Consensus 171 i~~~~-----~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 171 VHDYR-----GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCCCT-----TGGGCSSCCEEEEC
T ss_pred CcChH-----HhccCCCCCEEEee
Confidence 44443 24456777777664
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-14 Score=127.27 Aligned_cols=202 Identities=18% Similarity=0.157 Sum_probs=107.7
Q ss_pred HHHH-hcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcc-c
Q 043856 66 QLLE-ALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNE-F 140 (275)
Q Consensus 66 ~l~~-~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~-~ 140 (275)
.++. .+..+++|++|++++|.... .|..+..+++|++|++++|......+ .+..++ |+.|+++++. +..++.. +
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l 172 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEAL 172 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHH
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHh
Confidence 3443 36778888888888887766 46667788888888888853322222 366777 8888888664 5555432 1
Q ss_pred cccccccCCCCC----CCCCCCCCCCCCcccEeecccccccccccccccc------------------ccccCCCCcccE
Q 043856 141 LGIEEISEDDPS----SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITR------------------KENISIMPRLSS 198 (275)
Q Consensus 141 ~~~~~~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~------------------~~~~~~l~~L~~ 198 (275)
.....+..+.+. .......+..+++|+.|++.++..+..++..... ...+..+++|+.
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCe
Confidence 111111111111 0011123456677777777766554443321100 001123445555
Q ss_pred EeEccCcccCcCc-cccCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc---ccccch-hhcCCCCccEEE
Q 043856 199 LKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELS 272 (275)
Q Consensus 199 L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~ 272 (275)
|++++| .++.++ ..+..+++|++|++++|. +..+ +. .+..+++|++|+++ ++.+|. .+..+++|+.|+
T Consensus 253 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 253 LNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY----AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp EECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECTT----TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred eECCCC-cCCccChhhccccccCCEEECCCCc-cceECHH----HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 555554 244332 234445555555555542 2222 22 45566777777775 555554 346667777777
Q ss_pred ec
Q 043856 273 IS 274 (275)
Q Consensus 273 l~ 274 (275)
++
T Consensus 327 l~ 328 (477)
T 2id5_A 327 LD 328 (477)
T ss_dssp CC
T ss_pred cc
Confidence 65
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-14 Score=127.68 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=52.2
Q ss_pred CCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cccc-chhhcCCC
Q 043856 192 IMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRTT 266 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L~ 266 (275)
.+++|+.|++++| ++..+ |..+..+++|++|++++| .+..++.. .+..+++|++|+++ +..+ |.+++.++
T Consensus 297 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 297 HFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSR---MFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGG---GGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred cCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCCcChh---HhcCcccCCEEECCCCcccccChhhccccc
Confidence 5667777777776 45553 446667777777777776 33444321 45667888888885 5544 56777888
Q ss_pred CccEEEecC
Q 043856 267 MLQELSISE 275 (275)
Q Consensus 267 ~L~~L~l~~ 275 (275)
+|++|++++
T Consensus 372 ~L~~L~L~~ 380 (455)
T 3v47_A 372 NLKELALDT 380 (455)
T ss_dssp TCCEEECCS
T ss_pred cccEEECCC
Confidence 888888763
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-14 Score=131.40 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=21.9
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFC 108 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c 108 (275)
+..+++|++|++++|....+|.++..+++|++|++++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccC
Confidence 45555666666665555555555555556666665554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-14 Score=121.28 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~ 138 (275)
+..+..+++|++|++++|.... .|..++.+++|++|++++| .+..+|.-. .+ |++|+++++. +..++.
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~L~~L~l~~n~-i~~~~~ 140 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL-PSSLVELRIHDNR-IRKVPK 140 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC-CTTCCEEECCSSC-CCCCCS
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccc-cccCCEEECCCCc-cCccCH
Confidence 4567888899999998887766 4777888999999999884 455565421 15 7777777654 555544
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-14 Score=131.30 Aligned_cols=196 Identities=19% Similarity=0.177 Sum_probs=117.6
Q ss_pred cCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccc-ccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEF-LGIEE 145 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~-~~~~~ 145 (275)
+..+++|++|++++|....+| ..++.+++|++|++++|. +..+|+ ++.++ |++|+++++. +..+|... .....
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK 148 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCC
Confidence 455678888888877766643 467788888888888754 444442 56777 8888888764 66666543 23333
Q ss_pred ccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccc----c-----c--cccc---------------------
Q 043856 146 ISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYR----I-----T--RKEN--------------------- 189 (275)
Q Consensus 146 ~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~----i-----~--~~~~--------------------- 189 (275)
+..+.++. ......+..+++|+.|+++++. +..++.. + . ....
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 33222221 1122346678889999887653 2221110 0 0 0000
Q ss_pred cCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCC
Q 043856 190 ISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTT 266 (275)
Q Consensus 190 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~ 266 (275)
...+++|+.|++++| .++.. ..+..+++|+.|++++|..-...|. .+..+++|++|+++ +..+|..++.++
T Consensus 228 ~~~~~~L~~L~L~~n-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 301 (597)
T 3oja_B 228 GPVNVELTILKLQHN-NLTDT-AWLLNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNRLVALNLYGQPIP 301 (597)
T ss_dssp CSCCSCCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCEEESG----GGTTCSSCCEEECTTSCCCEEECSSSCCT
T ss_pred cccCCCCCEEECCCC-CCCCC-hhhccCCCCCEEECCCCccCCCCHH----HhcCccCCCEEECCCCCCCCCCcccccCC
Confidence 001234555555555 34443 3466778888888887743333344 56678888888886 777787777888
Q ss_pred CccEEEecC
Q 043856 267 MLQELSISE 275 (275)
Q Consensus 267 ~L~~L~l~~ 275 (275)
+|+.|++++
T Consensus 302 ~L~~L~Ls~ 310 (597)
T 3oja_B 302 TLKVLDLSH 310 (597)
T ss_dssp TCCEEECCS
T ss_pred CCcEEECCC
Confidence 888888864
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=124.13 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=97.0
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
++..+++|++|++++|....+| ++.+++|++|++++| .+..++ ++.++ |++|+++++. ++.++ +.....+..
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~-~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD-VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTY 131 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee-cCCCCcCCEEECCCCc-CCeec--CCCCCcCCE
Confidence 5667778888888877766665 677788888888874 344454 66777 7888877664 55554 222111111
Q ss_pred CCCCCC-CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 149 DDPSSS-SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 149 ~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
+.++.. .....+..+++|+.|++.++..+..+. +..+++|+.|++++| +++.+| +..+++|+.|++++
T Consensus 132 L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp EECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCS
T ss_pred EECCCCccceeccccCCcCCEEECCCCCcccccc--------cccCCcCCEEECCCC-ccceec--cccCCCCCEEECcC
Confidence 111100 000124456667777666654443332 114566666666665 455555 45556666666655
Q ss_pred CCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 228 CENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 228 c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
| .+..++ +..+++|++|+++ ++.+| ++.+++|+.|+++
T Consensus 201 N-~l~~~~------l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 201 N-NITKLD------LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCS 241 (457)
T ss_dssp S-CCSCCC------CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECC
T ss_pred C-cCCeec------cccCCCCCEEECcCCcccccC--ccccCCCCEEEee
Confidence 4 233221 3345555555554 44444 4455555555543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=132.02 Aligned_cols=190 Identities=15% Similarity=0.072 Sum_probs=117.5
Q ss_pred CCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccc---------
Q 043856 72 QPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEF--------- 140 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~--------- 140 (275)
..+++|++|++++|....+ |..++.+++|++|+|++|. +...++++.++ |++|++++|. +..++...
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVGPSIETLHAAN 108 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEECTTCCEEECCS
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCCCCcCEEECcC
Confidence 3445899999999887764 5688899999999999854 44344477888 8888888764 55444210
Q ss_pred cc--------cccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccC
Q 043856 141 LG--------IEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK 208 (275)
Q Consensus 141 ~~--------~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~ 208 (275)
.. ...+..+.++. ......+..+++|+.|+++++. +..... ......+++|+.|++++| .++
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~l~~~l~~L~~L~Ls~N-~l~ 182 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF----AELAASSDTLEHLNLQYN-FIY 182 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEG----GGGGGGTTTCCEEECTTS-CCC
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcCh----HHHhhhCCcccEEecCCC-ccc
Confidence 00 00000000110 0011123445556666665542 221111 001114677888888777 576
Q ss_pred cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 209 ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 209 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+|. ...+++|+.|++++| .+..+|. .+..+++|+.|+++ +..+|..++.+++|+.|++++
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N-~l~~~~~----~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSS-CCCEECG----GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred cccc-cccCCCCCEEECCCC-CCCCCCH----hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence 6654 335788888888876 4666666 46678888888886 777888888888888888864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=130.16 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=100.6
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|..+..+++|++|++++|.... .|..+..+++|++|++++|.....+|. ++.++ |++|+++++. +..++..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-- 368 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCC-- 368 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEES--
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCc--
Confidence 345555555556666665555444 244555555566666555443333332 44555 5555555543 2222100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-Cc-cccCCCCC
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LP-DYLLQTTA 219 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp-~~l~~l~~ 219 (275)
...+..+++|+.|+++++.- ..+. ...+..+++|+.|++++| ++.. .| ..+..+++
T Consensus 369 ---------------~~~~~~l~~L~~L~l~~n~l-~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 369 ---------------NLQLRNLSHLQSLNLSYNEP-LSLK-----TEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHL 426 (606)
T ss_dssp ---------------TTTTTTCTTCCEEECCSCSC-EEEC-----TTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTT
T ss_pred ---------------chhcccCCCCCEEECCCCcC-CcCC-----HHHhcCCccCCeEECCCC-cCCCcccchhhhCccc
Confidence 00144566677776665532 2221 112235777888888777 4443 23 23677888
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc---ccc--c--chhhcCCCCccEEEecC
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKV--L--PDYLLRTTMLQELSISE 275 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~--l--p~~l~~L~~L~~L~l~~ 275 (275)
|++|++++|......+. .+..+++|++|+++ +.. + +..++.+++|++|++++
T Consensus 427 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQ----LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp CCEEECTTCCCBTTCTT----TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred CCEEECCCCccCCcCHH----HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 88888887753333333 56678888888886 332 2 24678888888888864
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=122.83 Aligned_cols=190 Identities=15% Similarity=0.070 Sum_probs=114.6
Q ss_pred CCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccc---------
Q 043856 72 QPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEF--------- 140 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~--------- 140 (275)
..+++|++|++++|....+ |..+..+++|++|++++|. +..++++..++ |++|+++++. ++.++...
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVGPSIETLHAAN 108 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEECTTCCEEECCS
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccCCCCcCEEECCC
Confidence 4566788888887776654 3567778888888887743 33333466667 7777777653 44333110
Q ss_pred c--------ccccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccC
Q 043856 141 L--------GIEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK 208 (275)
Q Consensus 141 ~--------~~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~ 208 (275)
. ....+..+.++. ......+..+++|+.|+++++. +..... ......+++|+.|++++| .++
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~~~l~~L~~L~L~~N-~l~ 182 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF----AELAASSDTLEHLNLQYN-FIY 182 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEG----GGGGGGTTTCCEEECTTS-CCC
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccH----HHHhhccCcCCEEECCCC-cCc
Confidence 0 000000000110 0011123445667777776543 222221 001114678888888887 577
Q ss_pred cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 209 ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 209 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+|. ...+++|++|++++| .+..++. .+..+++|++|+++ ++.+|..+..+++|+.|++++
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 183 DVKG-QVVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp EEEC-CCCCTTCCEEECCSS-CCCEECG----GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred cccc-ccccccCCEEECCCC-cCCcchh----hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 7754 334888888888887 5666666 46678889999986 778888888889999998864
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=117.54 Aligned_cols=168 Identities=23% Similarity=0.217 Sum_probs=132.1
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCcccccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (275)
+..+++++.++++++....+|..+. +++++|++++|. +..++ .+..++ |++|+++++. ++.++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV--------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC---------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccC---------
Confidence 4567899999999988777887664 789999999954 44443 377888 9999999875 666543
Q ss_pred CCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEe
Q 043856 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIY 226 (275)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~ 226 (275)
...+++|+.|+++++ .+..++. ....+++|+.|+++++ +++.+| ..+..+++|++|+++
T Consensus 73 ------------~~~l~~L~~L~Ls~N-~l~~l~~------~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 73 ------------DGTLPVLGTLDLSHN-QLQSLPL------LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp ------------CSCCTTCCEEECCSS-CCSSCCC------CTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECT
T ss_pred ------------CCCCCcCCEEECCCC-cCCcCch------hhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECC
Confidence 236899999999975 3555553 2237899999999998 788887 458889999999999
Q ss_pred cCCCCccCCccccccCCCCCcccceecc---ccccchh-hcCCCCccEEEecC
Q 043856 227 SCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDY-LLRTTMLQELSISE 275 (275)
Q Consensus 227 ~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~~L~l~~ 275 (275)
+| .+..++.. .+..+++|+.|+++ ++.+|.. +..+++|+.|++++
T Consensus 133 ~N-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 133 GN-ELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp TS-CCCCCCTT---TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CC-CCCccChh---hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 87 56666652 45679999999996 8888865 57899999999864
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-14 Score=130.92 Aligned_cols=145 Identities=23% Similarity=0.263 Sum_probs=77.9
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+..+++|+.|++++|....+|. +..+++|+.|+|++| .+..+|.+..++ |+.|+|++|. +..++ .
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~-~--------- 126 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHNG-ISDIN-G--------- 126 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEECTTSC-CCCCG-G---------
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEEecCCC-CCCCc-c---------
Confidence 34555566666666655544443 556666666666653 344455555555 6666666543 33322 1
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..+. .+..+++|+.|++++| .+..++. +..+++|+.|+|++|
T Consensus 127 -----------l~~l~~L~~L~Ls~N~-l~~l~-------~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 127 -----------LVHLPQLESLYLGNNK-ITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp -----------GGGCTTCSEEECCSSC-CCCCG-------GGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred -----------ccCCCccCEEECCCCc-cCCch-------hhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC
Confidence 3356666666666542 22221 1124666666666666 4555544 556666666666665
Q ss_pred CCCccCCccccccCCCCCcccceecc
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+..++ .+..+++|+.|+++
T Consensus 186 -~i~~l~-----~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 186 -HISDLR-----ALAGLKNLDVLELF 205 (605)
T ss_dssp -CCCBCG-----GGTTCTTCSEEECC
T ss_pred -CCCCCh-----HHccCCCCCEEEcc
Confidence 333332 24556666666664
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=119.08 Aligned_cols=194 Identities=17% Similarity=0.229 Sum_probs=131.6
Q ss_pred HHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
.+|..+. ++|++|+++++....+|. .+..+++|++|++++|......| .++.++ |++|+++++. ++.+|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~- 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP- 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC-
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc-
Confidence 3555443 689999999998777654 78899999999999965443334 478899 9999999775 777776543
Q ss_pred cccccCCCCCCCC----CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCC
Q 043856 143 IEEISEDDPSSSS----SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTT 218 (275)
Q Consensus 143 ~~~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 218 (275)
..+..+.++... ....+..+++|+.|++.++.- ..... ....+..+++|+.|++++| .++.+|..+. +
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~---~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~ 192 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGI---ENGAFQGMKKLSYIRIADT-NITTIPQGLP--P 192 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-CGGGB---CTTGGGGCTTCCEEECCSS-CCCSCCSSCC--T
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-CccCc---ChhhccCCCCcCEEECCCC-ccccCCcccc--c
Confidence 112222111111 111245677888888876542 11100 0112336889999999888 6888887654 8
Q ss_pred CccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccc-hhhcCCCCccEEEecC
Q 043856 219 ALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLP-DYLLRTTMLQELSISE 275 (275)
Q Consensus 219 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp-~~l~~L~~L~~L~l~~ 275 (275)
+|++|++++|. +..++.. .+..+++|++|+++ ++.++ ..+..+++|++|++++
T Consensus 193 ~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 193 SLTELHLDGNK-ITKVDAA---SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp TCSEEECTTSC-CCEECTG---GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred cCCEEECCCCc-CCccCHH---HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 99999998874 4444321 56789999999996 66665 4788899999999874
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=125.33 Aligned_cols=179 Identities=19% Similarity=0.136 Sum_probs=107.0
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.++.+++|++|+++++....+| .++.+++|++|++++| .+..+| ++.++ |++|+++++. ++.++ +.....+..
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--cCCCCcCCE
Confidence 3445789999999999877777 6889999999999995 466666 88899 9999999875 66654 222111111
Q ss_pred CCCCCCC-CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 149 DDPSSSS-SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 149 ~~~~~~~-~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
+.++... ..-.+..+++|+.|+++++. +..++ ...+++|+.|++++|..+..+ .+..+++|++|++++
T Consensus 111 L~L~~N~l~~l~~~~l~~L~~L~l~~N~-l~~l~--------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 111 LNCDTNKLTKLDVSQNPLLTYLNCARNT-LTEID--------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTSC-CSCCC--------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred EECCCCcCCeecCCCCCcCCEEECCCCc-cceec--------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 1111000 00013444555555554432 22211 114556666666665545544 245566666666665
Q ss_pred CCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 228 CENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 228 c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
| .++.+| +..+++|+.|+++ ++.++ ++.+++|+.|+++
T Consensus 180 n-~l~~l~------l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 180 N-KITELD------VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCS 220 (457)
T ss_dssp S-CCCCCC------CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECC
T ss_pred C-ccceec------cccCCCCCEEECcCCcCCeec--cccCCCCCEEECc
Confidence 5 344433 3456677777775 55553 6677777777775
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-14 Score=129.00 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=132.0
Q ss_pred HHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC------------------CCCcc-cceeecc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP------------------LGKLP-LEKLELR 128 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~------------------l~~L~-L~~L~l~ 128 (275)
|..+..+++|++|++++|.....++ ++.+++|++|++++|. +..+|. ...++ |+.|+++
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~ 128 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECC
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECC
Confidence 5678889999999999988765444 7888999999888863 322221 12345 7777887
Q ss_pred cccccccc-CccccccccccCCCCCCCC----CCCCCC-CCCcccEeeccccccccccccccccccccCCCCcccEEeEc
Q 043856 129 DLKSVKRV-GNEFLGIEEISEDDPSSSS----SSSSVT-AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVG 202 (275)
Q Consensus 129 ~~~~l~~l-~~~~~~~~~~~~~~~~~~~----~~~~l~-~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~ 202 (275)
++. +..+ |..+.....+..+.++... ....+. .+++|+.|+++++. +..++. ...+++|+.|+++
T Consensus 129 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-------~~~l~~L~~L~Ls 199 (487)
T 3oja_A 129 NNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------QVVFAKLKTLDLS 199 (487)
T ss_dssp SSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------CCCCTTCCEEECC
T ss_pred CCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-------cccCCCCCEEECC
Confidence 665 4444 3333333333333333211 122233 68999999999865 444432 1258999999999
Q ss_pred cCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c--cccchhhcCCCCccEEEe
Q 043856 203 SCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L--KVLPDYLLRTTMLQELSI 273 (275)
Q Consensus 203 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l--~~lp~~l~~L~~L~~L~l 273 (275)
+| +++.+|..+..+++|+.|++++| .+..+|. .+..+++|+.|+++ + ..+|.++..+++|+.+++
T Consensus 200 ~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~----~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 200 SN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp SS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT----TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CC-CCCCCCHhHcCCCCccEEEecCC-cCcccch----hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 98 79999888999999999999997 5667887 57789999999996 3 377888888887776554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-13 Score=117.63 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=132.7
Q ss_pred HHHHHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcC-C-CCCCcc-cceeeccccccccccCccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHL-P-PLGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~l-p-~l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
..+|..+ .++|++|+++++....+ |..+.++++|++|++++|. +..+ | .++.++ |++|+++++. +..+|..+
T Consensus 46 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 121 (332)
T 2ft3_A 46 KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL 121 (332)
T ss_dssp SSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSC
T ss_pred cccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCccc
Confidence 3456555 36899999999987775 5578899999999999964 4444 3 478889 9999999775 77777654
Q ss_pred cccccccCCCCCC----CCCCCCCCCCCcccEeecccccccc--ccccccc----------ccc----ccCCCCcccEEe
Q 043856 141 LGIEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLE--EWNYRIT----------RKE----NISIMPRLSSLK 200 (275)
Q Consensus 141 ~~~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~--~l~~~i~----------~~~----~~~~l~~L~~L~ 200 (275)
. ..+..+.++. ......+..+++|+.|++.++.--. ..+..+. ... ....+++|+.|+
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~ 199 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEE
Confidence 3 2222222221 1122235678888888887653210 1110000 000 000235777888
Q ss_pred EccCcccCcCc-cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 201 VGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 201 l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
+++| +++.++ ..+..+++|++|++++| .+..++.. .+..+++|++|+++ ++.+|.++..+++|+.|++++
T Consensus 200 l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 200 LDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG---SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT---GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS
T ss_pred CCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChh---HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC
Confidence 8777 566654 56778889999998887 44444431 46678999999996 889999999999999999874
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=124.89 Aligned_cols=189 Identities=19% Similarity=0.316 Sum_probs=87.9
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
+..+++|++|++++|....++. ++++++|++|++++| .+..++.+..++ |++|++++|. +..++. +.....+..+
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChh-hccCCcccEe
Confidence 4555556666665555444443 556666666666653 344444455566 6666666543 333321 1111110000
Q ss_pred CCC-CCCCCCCCCCCCcccEeeccccccccccccccc----------------cccccCCCCcccEEeEccCcccCcCcc
Q 043856 150 DPS-SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRIT----------------RKENISIMPRLSSLKVGSCNKLKALPD 212 (275)
Q Consensus 150 ~~~-~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~----------------~~~~~~~l~~L~~L~l~~c~~l~~lp~ 212 (275)
.+. .......+..+++|+.|+++++. +..+.. +. .......+++|+.|++++| .++.++
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~- 237 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIG- 237 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG-
T ss_pred ecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCC-Ccccch-
Confidence 000 00011123445555555555432 111110 00 0000113455555555554 344443
Q ss_pred ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 213 YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 213 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
.+..+++|++|++++|. +..++. +..+++|++|+++ +..+|. +..+++|+.|+++
T Consensus 238 ~l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQ-ISNLAP-----LSGLTKLTELKLGANQISNISP-LAGLTALTNLELN 295 (466)
T ss_dssp GGGGCTTCSEEECCSSC-CCCCGG-----GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred hhhcCCCCCEEECCCCc-cccchh-----hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcC
Confidence 34455566666665552 222221 4456777777775 555554 6677777777775
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.5e-14 Score=112.35 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=114.9
Q ss_pred CCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccc
Q 043856 95 TSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKE 173 (275)
Q Consensus 95 ~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 173 (275)
..+++|++|++++ +.+..+|.+..++ |++|++++| .+..++ . +..+++|+.|++++
T Consensus 41 ~~l~~L~~L~l~~-n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~-~--------------------l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 41 AQMNSLTYITLAN-INVTDLTGIEYAHNIKDLTINNI-HATNYN-P--------------------ISGLSNLERLRIMG 97 (197)
T ss_dssp HHHHTCCEEEEES-SCCSCCTTGGGCTTCSEEEEESC-CCSCCG-G--------------------GTTCTTCCEEEEEC
T ss_pred hhcCCccEEeccC-CCccChHHHhcCCCCCEEEccCC-CCCcch-h--------------------hhcCCCCCEEEeEC
Confidence 4778999999999 4566888888899 999999988 354443 2 55799999999998
Q ss_pred cccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccEEEEecCCCCccCCccccccCCCCCccccee
Q 043856 174 LDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLR 252 (275)
Q Consensus 174 ~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~ 252 (275)
+.--...+. .+..+++|+.|++++| ++.. .|..+..+++|++|++++|..+..++. +..+++|++|+
T Consensus 98 n~l~~~~~~------~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~ 165 (197)
T 4ezg_A 98 KDVTSDKIP------NLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLN 165 (197)
T ss_dssp TTCBGGGSC------CCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEE
T ss_pred CccCcccCh------hhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEE
Confidence 642222222 2337999999999998 5664 677789999999999999975776653 67799999999
Q ss_pred cc---ccccchhhcCCCCccEEEecC
Q 043856 253 IG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 253 l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++ +..+| .+..+++|+.|++++
T Consensus 166 l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 166 IQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred CCCCCCcChH-HhccCCCCCEEEeeC
Confidence 97 77777 788999999999874
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=116.63 Aligned_cols=186 Identities=19% Similarity=0.217 Sum_probs=91.8
Q ss_pred CCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCcc-ccccccccCC
Q 043856 75 LNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNE-FLGIEEISED 149 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~-~~~~~~~~~~ 149 (275)
++|++|+++++....++. .+.++++|++|++++| .+..++ .+..++ |++|+++++. +..++.. +.....+..+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 356777776666555433 5666677777777664 333333 255666 7777776554 4444322 1111111000
Q ss_pred CCCC----CCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCcc-
Q 043856 150 DPSS----SSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQ- 221 (275)
Q Consensus 150 ~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~- 221 (275)
.+.. ......+..+++|+.|+++++. +.. ++. .+..+++|+.|++++| +++.++ ..+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPE------YFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCG------GGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCc-cceecCch------hhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccc
Confidence 0000 0000013345555555555432 111 111 1113555555555555 344432 2233333333
Q ss_pred ---EEEEecCCCCccCCccccccCCCCCcccceecc---ccccchh-hcCCCCccEEEecC
Q 043856 222 ---ELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDY-LLRTTMLQELSISE 275 (275)
Q Consensus 222 ---~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~~L~l~~ 275 (275)
.|+++++ .+..++. ......+|++|+++ ++.+|.. +..+++|+.|++++
T Consensus 178 l~l~L~ls~n-~l~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 178 LNLSLDLSLN-PMNFIQP----GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCEEEECCSS-CCCEECT----TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred cceeeecCCC-cccccCc----cccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 4555544 3333333 23344589999996 7777764 58899999999874
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-13 Score=110.09 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=94.7
Q ss_pred HHHHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|..+. +++++|+++++....+ |..+.++++|++|++++| .+..++. +..++ |+.|+++++. ++.++...
T Consensus 28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 102 (251)
T 3m19_A 28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGV- 102 (251)
T ss_dssp SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT-
T ss_pred ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc-ccccChhH-
Confidence 3454443 4777777777766553 345667777777777774 3443432 56677 7777777654 55554321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTAL 220 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L 220 (275)
+..+++|+.|+++++ .+..++. ..+..+++|+.|++++| +++.+|. .+..+++|
T Consensus 103 ------------------~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 103 ------------------FDHLTQLDKLYLGGN-QLKSLPS-----GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNL 157 (251)
T ss_dssp ------------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ------------------hcccCCCCEEEcCCC-cCCCcCh-----hHhccCCcccEEECcCC-cCCccCHHHcCcCcCC
Confidence 335677777777764 3443332 11225677777777776 5666665 46677777
Q ss_pred cEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
++|++++| .+..++.. .+..+++|++|+++
T Consensus 158 ~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 158 QTLSLSTN-QLQSVPHG---AFDRLGKLQTITLF 187 (251)
T ss_dssp CEEECCSS-CCSCCCTT---TTTTCTTCCEEECC
T ss_pred CEEECCCC-cCCccCHH---HHhCCCCCCEEEee
Confidence 77777776 34444431 35567777777774
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.6e-14 Score=129.40 Aligned_cols=189 Identities=21% Similarity=0.205 Sum_probs=112.9
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcC---C-CCCCcc-cceeeccccccccccCcccccccccc
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHL---P-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~l---p-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (275)
.+++|++|+++++....... ...+++|++|++++|. +... | .+..++ |++|+++++. +..++..+.....+.
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~ 399 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE 399 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCC-CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred cccccCEEeCcCCccccccc-cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCC
Confidence 45566666666655433111 1455666666666542 2211 1 133444 5555555443 333333222222222
Q ss_pred CCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccC--cCccccCCCCCc
Q 043856 148 EDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK--ALPDYLLQTTAL 220 (275)
Q Consensus 148 ~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L 220 (275)
.+.+.. ......+..+++|+.|+++++.-....+. .+..+++|+.|++++|. +. .+|..+..+++|
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNL 472 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT------TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTC
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh------hhhcCCcCcEEECcCCc-CccccchhhhhcccCC
Confidence 111110 00112355788999999988753332222 23368999999999984 54 588889999999
Q ss_pred cEEEEecCCCCccCCccccccCCCCCcccceecc---ccccc-hhhcCCCCccEEEecC
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLP-DYLLRTTMLQELSISE 275 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp-~~l~~L~~L~~L~l~~ 275 (275)
++|++++|......|. .+..+++|++|+++ +..+| ..+.++++|+.|++++
T Consensus 473 ~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccccCChh----hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 9999999854333354 67789999999996 66665 4678999999999874
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=114.29 Aligned_cols=174 Identities=15% Similarity=0.176 Sum_probs=109.4
Q ss_pred hcCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCc-cccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGN-EFLGIE 144 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~-~~~~~~ 144 (275)
.+..+++|++|++++|....++ ..+..+++|++|++++|. +..++ .+..++ |++|+++++. +..++. .+....
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence 5667778888888777665543 356677788888887743 33333 356677 7777777654 444433 222222
Q ss_pred cccCCCCCCC-----CCCCCCCCCCcccEeecccccccccccc-ccccccccCCCCccc-EEeEccCcccCcCccccCCC
Q 043856 145 EISEDDPSSS-----SSSSSVTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLS-SLKVGSCNKLKALPDYLLQT 217 (275)
Q Consensus 145 ~~~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~-~L~l~~c~~l~~lp~~l~~l 217 (275)
.+..+.++.. .....+..+++|+.|+++++. +..++. .+. ....++.|. .|+++++ .++.+|......
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~ 199 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR---VLHQMPLLNLSLDLSLN-PMNFIQPGAFKE 199 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH---HHHTCTTCCEEEECCSS-CCCEECTTSSCS
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhh---hhhhccccceeeecCCC-cccccCccccCC
Confidence 2222222211 123346778999999999864 333321 111 111333443 8999998 688888777777
Q ss_pred CCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 218 TALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+|++|++++|. ++.++.. .+..+++|++|+++
T Consensus 200 ~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 200 IRLKELALDTNQ-LKSVPDG---IFDRLTSLQKIWLH 232 (276)
T ss_dssp CCEEEEECCSSC-CSCCCTT---TTTTCCSCCEEECC
T ss_pred CcccEEECCCCc-eeecCHh---HhcccccccEEEcc
Confidence 799999999884 7777662 45679999999996
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-14 Score=121.65 Aligned_cols=166 Identities=13% Similarity=0.111 Sum_probs=99.0
Q ss_pred cCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCCCCC---------------
Q 043856 94 LTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSS--------------- 155 (275)
Q Consensus 94 l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~--------------- 155 (275)
+..+++|++|++++| .+..++ .+..++ |++|+++++. +..++. +.....+..+.++...
T Consensus 30 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 30 RQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp HTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred hccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence 346789999999995 455555 378899 9999999875 444332 3222222221111000
Q ss_pred -----CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-cccc-CCCCCccEEEEecC
Q 043856 156 -----SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYL-LQTTALQELSIYSC 228 (275)
Q Consensus 156 -----~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l-~~l~~L~~L~l~~c 228 (275)
.......+++|+.|+++++. +..++. ..+..+++|+.|++++| .+..+ |..+ ..+++|++|++++|
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNK-ITMLRD-----LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSC-CCSGGG-----BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCccCCcCccccCCCCEEECCCCC-CCCccc-----hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC
Confidence 00001123444444444432 222111 11224677888888777 56654 3333 35788888888876
Q ss_pred CCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+..++. ...+++|++|+++ ++.+|..+..+++|+.|++++
T Consensus 180 -~l~~~~~-----~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 180 -FIYDVKG-----QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp -CCCEEEC-----CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred -cCccccc-----ccccccCCEEECCCCcCCcchhhhcccCcccEEECcC
Confidence 3555543 3358899999996 888888899999999999874
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=117.88 Aligned_cols=189 Identities=15% Similarity=0.122 Sum_probs=112.7
Q ss_pred CCCCCeEEecccCCcc-ccccc--CCCCCCcEEeeecCCCCCcCCC-----CCCcc-cceeeccccccccccCc-ccccc
Q 043856 74 PLNVEKLWIIFYGGNI-LPKWL--TSLTNLRDLKLVFCENCEHLPP-----LGKLP-LEKLELRDLKSVKRVGN-EFLGI 143 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~-lp~~l--~~l~~L~~L~L~~c~~~~~lp~-----l~~L~-L~~L~l~~~~~l~~l~~-~~~~~ 143 (275)
+++|++|++++|.... .|..+ ..+++|++|++++|......+. +..++ |++|+++++. +..++. .+...
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccC
Confidence 3568888888877654 56555 6788888888888644433332 23466 7888887665 444432 22222
Q ss_pred ccccCCCCCCCCC--------CCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-cccc
Q 043856 144 EEISEDDPSSSSS--------SSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYL 214 (275)
Q Consensus 144 ~~~~~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l 214 (275)
..+..+.++.... ......+++|+.|+++++. +..++... ......+++|+.|++++| +++.+ |..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~--~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~ 244 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVC--AALAAAGVQPHSLDLSHN-SLRATVNPSA 244 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHH--HHHHHHTCCCSSEECTTS-CCCCCCCSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHH--HHHHhcCCCCCEEECCCC-CCCccchhhH
Confidence 2222222221110 1112456777777776653 32222100 000114688888888887 56664 6666
Q ss_pred CCC---CCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 215 LQT---TALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 215 ~~l---~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
..+ ++|++|++++| .++.+|. .+ .++|++|+++ ++.+|. +..+++|+.|++++
T Consensus 245 ~~~~~~~~L~~L~Ls~N-~l~~lp~----~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFA-GLEQVPK----GL--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp SSCCCCTTCCCEECCSS-CCCSCCS----CC--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSS
T ss_pred HhccCcCcCCEEECCCC-CCCchhh----hh--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcC
Confidence 665 68888888876 5567766 33 3788888886 777764 67788888888864
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=125.36 Aligned_cols=61 Identities=15% Similarity=0.000 Sum_probs=39.4
Q ss_pred HhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccc
Q 043856 69 EALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLK 131 (275)
Q Consensus 69 ~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~ 131 (275)
..+..+++|++|++++|....+ |..++++++|++|++++| .+..+|.. .++ |++|+++++.
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-PTVNLKHLDLSFNA 101 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-CCCCCSEEECCSSC
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc-ccCCccEEeccCCc
Confidence 4566677777777777766553 566777777777777773 44455544 555 6666666554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.1e-13 Score=111.97 Aligned_cols=151 Identities=22% Similarity=0.251 Sum_probs=89.4
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEI 146 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~ 146 (275)
.+..+++|++|++++|....++ .+..+++|++|++++| .+..++. ++.++ |++|+++++. +..++...
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------ 128 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGV------ 128 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT------
T ss_pred ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHH------
Confidence 4666788888888887766543 6778888888888885 4444543 56777 8888888764 55554331
Q ss_pred cCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEE
Q 043856 147 SEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSI 225 (275)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l 225 (275)
+..+++|+.|++.++ .+..++. ..+..+++|+.|++++| +++.+|.. +..+++|++|++
T Consensus 129 -------------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 129 -------------FDKLTNLTYLNLAHN-QLQSLPK-----GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp -------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred -------------hccCCCCCEEECCCC-ccCccCH-----HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEEC
Confidence 235566666666654 2333331 11224566666666666 45555433 355666666666
Q ss_pred ecCCCCccCCccccccCCCCCcccceec
Q 043856 226 YSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 226 ~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
++|. +..++.. .+..+++|++|++
T Consensus 189 ~~N~-l~~~~~~---~~~~l~~L~~L~l 212 (272)
T 3rfs_A 189 YQNQ-LKSVPDG---VFDRLTSLQYIWL 212 (272)
T ss_dssp CSSC-CSCCCTT---TTTTCTTCCEEEC
T ss_pred CCCc-CCccCHH---HHhCCcCCCEEEc
Confidence 6653 3333331 2344555555555
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=126.83 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeecccc
Q 043856 75 LNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDL 130 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~ 130 (275)
++|++|+++++.... .|..+.++++|++|++++|. +..++ .++.++ |++|+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC
Confidence 455555555555444 23445555555555555532 22222 244555 555555544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=118.51 Aligned_cols=187 Identities=21% Similarity=0.256 Sum_probs=126.2
Q ss_pred CCeEEecccCCcc--cccccC-------CCCCCcEEeeecCCCCCcCCC-C--CCcc-cceeeccccccccccCcccccc
Q 043856 77 VEKLWIIFYGGNI--LPKWLT-------SLTNLRDLKLVFCENCEHLPP-L--GKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 77 L~~L~l~~~~~~~--lp~~l~-------~l~~L~~L~L~~c~~~~~lp~-l--~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
|+.|+++++.... +|..+. .+++|++|++++|.....+|. + ..++ |++|+++++. +..+|..+...
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 7777887766533 666655 799999999999765556664 3 7888 9999999875 66555433322
Q ss_pred -----ccccCCCCC----CCCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCcCc-
Q 043856 144 -----EEISEDDPS----SSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKALP- 211 (275)
Q Consensus 144 -----~~~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp- 211 (275)
..+..+.++ .......+..+++|+.|+++++.-... ++..+ ....+++|+.|++++| +++.++
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----~~~~l~~L~~L~L~~N-~l~~~~~ 218 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL----CPLKFPTLQVLALRNA-GMETPSG 218 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS----CTTSCTTCCEEECTTS-CCCCHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH----HhccCCCCCEEECCCC-cCcchHH
Confidence 222222111 122334567889999999988763322 11111 1136899999999998 677443
Q ss_pred --cc-cCCCCCccEEEEecCCCCccCC-ccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 212 --DY-LLQTTALQELSIYSCENLEELP-IPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 212 --~~-l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.. +..+++|++|++++|. +...+ .. .+..+++|++|+++ ++.+|..+. ++|++|++++
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNS-LRDAAGAP---SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSC-CCSSCCCS---CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS
T ss_pred HHHHHHhcCCCCCEEECCCCc-CCcccchh---hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCC
Confidence 22 3467999999999885 44433 21 34567999999996 888998776 8999999874
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-13 Score=121.07 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=47.8
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCc
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTML 268 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L 268 (275)
.+++|+.|++++| ++..++. +..+++|++|++++| .+..++ .+..+++|+.|+++ +..++. +..+++|
T Consensus 307 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 377 (466)
T 1o6v_A 307 NLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHNQISDLTP-LANLTRI 377 (466)
T ss_dssp GCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred CCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCCccCccch-hhcCCCC
Confidence 4666777777666 4555544 556677777777766 343332 35567778888775 544443 6777888
Q ss_pred cEEEecC
Q 043856 269 QELSISE 275 (275)
Q Consensus 269 ~~L~l~~ 275 (275)
+.|++++
T Consensus 378 ~~L~l~~ 384 (466)
T 1o6v_A 378 TQLGLND 384 (466)
T ss_dssp CEEECCC
T ss_pred CEEeccC
Confidence 8877753
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=118.07 Aligned_cols=191 Identities=19% Similarity=0.160 Sum_probs=120.3
Q ss_pred CCCCeEEecccCCcc--cccc--cCCCCCCcEEeeecCCCCCcCCC-C--CCcc-cceeeccccccccc-cC----cccc
Q 043856 75 LNVEKLWIIFYGGNI--LPKW--LTSLTNLRDLKLVFCENCEHLPP-L--GKLP-LEKLELRDLKSVKR-VG----NEFL 141 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~--lp~~--l~~l~~L~~L~L~~c~~~~~lp~-l--~~L~-L~~L~l~~~~~l~~-l~----~~~~ 141 (275)
..++.+.+.++.... +... ...+++|++|++++|......|. + ..++ |+.|+++++. +.. .+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh
Confidence 357888888765432 1111 11457799999999766656654 3 7788 9999999875 332 11 1111
Q ss_pred ccccccCCCCC----CCCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCcCccc--
Q 043856 142 GIEEISEDDPS----SSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-- 213 (275)
Q Consensus 142 ~~~~~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-- 213 (275)
....+..+.++ .......+..+++|+.|+++++.-... ++. ......+++|+.|++++| +++.+|..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----ALCPHKFPAIQNLALRNT-GMETPTGVCA 217 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----TSCTTSSCCCCSCBCCSS-CCCCHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH----HHhhhcCCCCCEEECCCC-CCCchHHHHH
Confidence 11112111111 122334566788999999988753221 211 111236889999999998 67766542
Q ss_pred --cCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 214 --LLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 214 --l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
+..+++|++|++++|. +... |.... ....+++|++|+++ ++.+|..+. ++|+.|++++
T Consensus 218 ~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNS-LRATVNPSAP-RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp HHHHHTCCCSSEECTTSC-CCCCCCSCCS-SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCS
T ss_pred HHHhcCCCCCEEECCCCC-CCccchhhHH-hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCC
Confidence 4678999999999885 4444 54111 22224799999996 888888765 7999999874
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-12 Score=108.43 Aligned_cols=166 Identities=22% Similarity=0.280 Sum_probs=128.6
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.+.++++++....+|..+. ++|++|++++| .+..++ .+..++ |++|+++++. ++.++...
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~------------ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI------------ 80 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh------------
Confidence 57889999888777887654 68999999995 456665 378899 9999999875 66666542
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENL 231 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|. .+..+++|++|++++| .+
T Consensus 81 -------~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l 145 (270)
T 2o6q_A 81 -------FKELKNLETLWVTDNK-LQALPI-----GVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-EL 145 (270)
T ss_dssp -------TSSCTTCCEEECCSSC-CCCCCT-----TTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred -------hcCCCCCCEEECCCCc-CCcCCH-----hHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cC
Confidence 3478999999998764 444442 12336899999999998 6877764 4688999999999998 56
Q ss_pred ccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 232 EELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 232 ~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
..++.. .+..+++|++|+++ ++.+|. .+..+++|+.|++++
T Consensus 146 ~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 146 QSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHh---HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 666652 46789999999996 777775 578999999999864
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.8e-15 Score=127.36 Aligned_cols=174 Identities=16% Similarity=0.174 Sum_probs=79.8
Q ss_pred cCCCCCCCeEEecccCCcc--cccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccc--cCccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNI--LPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKR--VGNEFLGIE 144 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~--l~~~~~~~~ 144 (275)
+..+++|++|++++|.... +|..+..+++|++|++++|......+ .++.++ |++|++++|..++. ++..
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~----- 163 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL----- 163 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-----
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-----
Confidence 3345566666666554322 44455556666666666543221111 244455 66666665533331 2211
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCC-cccEEeEccCc-cc--CcCccccCCCC
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMP-RLSSLKVGSCN-KL--KALPDYLLQTT 218 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~-~L~~L~l~~c~-~l--~~lp~~l~~l~ 218 (275)
+..+++|+.|++.+|..+.. ++.. ...++ +|+.|++++|. .+ ..+|..+.+++
T Consensus 164 ---------------~~~~~~L~~L~l~~~~~l~~~~~~~~------~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 164 ---------------LSSCSRLDELNLSWCFDFTEKHVQVA------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp ---------------HHHCTTCCEEECCCCTTCCHHHHHHH------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred ---------------HhcCCCCCEEcCCCCCCcChHHHHHH------HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 22455556665555533332 1110 11355 55666655553 22 22444444555
Q ss_pred CccEEEEecCCCCc-cCCccccccCCCCCcccceecc-cccc-ch---hhcCCCCccEEEec
Q 043856 219 ALQELSIYSCENLE-ELPIPEDRRTTDIPRLSSLRIG-LKVL-PD---YLLRTTMLQELSIS 274 (275)
Q Consensus 219 ~L~~L~l~~c~~l~-~l~~~~~~~~~~l~~L~~L~l~-l~~l-p~---~l~~L~~L~~L~l~ 274 (275)
+|++|++++|..+. ..+. .+..+++|++|+++ ...+ |. .++++++|+.|+++
T Consensus 223 ~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp TCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 56666655554332 1222 34445555555554 1122 11 34555556655554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=114.67 Aligned_cols=145 Identities=22% Similarity=0.261 Sum_probs=111.1
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+..+++|++|++++|....++. +..+++|++|++++| .+..++.+..++ |+.|++++|. +..++ .
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-i~~~~-~--------- 129 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG-ISDIN-G--------- 129 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSC-CCCCG-G---------
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCCc-CCCCh-h---------
Confidence 46778999999999998877776 889999999999994 566778888899 9999999875 55543 1
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..+. .+..+++|+.|++++| +++.++. +..+++|+.|++++|
T Consensus 130 -----------l~~l~~L~~L~l~~n~-l~~~~-------~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 130 -----------LVHLPQLESLYLGNNK-ITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp -----------GGGCTTCCEEECCSSC-CCCCG-------GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred -----------hcCCCCCCEEEccCCc-CCcch-------hhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC
Confidence 4468888888888753 33332 2226888888888888 6777765 778888888888887
Q ss_pred CCCccCCccccccCCCCCcccceecc
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+..++ .+..+++|+.|+++
T Consensus 189 -~i~~l~-----~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 189 -HISDLR-----ALAGLKNLDVLELF 208 (291)
T ss_dssp -CCCBCG-----GGTTCTTCSEEEEE
T ss_pred -cCCCCh-----hhccCCCCCEEECc
Confidence 455554 35678888888885
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=109.42 Aligned_cols=166 Identities=19% Similarity=0.249 Sum_probs=102.2
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.++++++++....+|..+. +++++|++++|. +..++ .+..++ |++|+++++. +..++...
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------ 78 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGV------------ 78 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT------------
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhH------------
Confidence 45667777666666676554 577777777743 33333 266677 7777777654 54443321
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENL 231 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|.. +..+++|++|++++| .+
T Consensus 79 -------~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l 143 (251)
T 3m19_A 79 -------FDDLTELGTLGLANNQ-LASLPL-----GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QL 143 (251)
T ss_dssp -------TTTCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred -------hccCCcCCEEECCCCc-ccccCh-----hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cC
Confidence 3456777777777643 333331 12235677777777776 56666654 466777777777776 45
Q ss_pred ccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 232 EELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 232 ~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
..++.. .+..+++|++|+++ ++.+|. .+..+++|+.|++++
T Consensus 144 ~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 144 QSIPAG---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHH---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 555541 35567777777775 565554 566777777777753
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-13 Score=122.93 Aligned_cols=188 Identities=19% Similarity=0.123 Sum_probs=99.2
Q ss_pred CCCCCeEEecccCCc-cccccc-----CCCCCCcEEeeecCCCCCcCC---------------------------CCCCc
Q 043856 74 PLNVEKLWIIFYGGN-ILPKWL-----TSLTNLRDLKLVFCENCEHLP---------------------------PLGKL 120 (275)
Q Consensus 74 l~~L~~L~l~~~~~~-~lp~~l-----~~l~~L~~L~L~~c~~~~~lp---------------------------~l~~L 120 (275)
.++|++|++++|... .+|.++ +++++|+.+++++|.. .+| ....+
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l 323 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhC
Confidence 357888888877655 367766 5666666666655332 222 11445
Q ss_pred c-cceeeccccccccccCccccccccccCCCCCCCCCC------CCCCCCCcccEeeccccccccccccccccccccCCC
Q 043856 121 P-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSS------SSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIM 193 (275)
Q Consensus 121 ~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~------~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l 193 (275)
+ |++|+++++.....+|..+.....+..+.++..... ..+..+++|+.|+++++.-...++. ..+..+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-----~~~~~l 398 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-----GDCSWT 398 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-----CSCCCC
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-----chhccC
Confidence 5 666666665422223333221111111111111000 1133455555555554432111221 112245
Q ss_pred CcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchh-hcCCCCcc
Q 043856 194 PRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDY-LLRTTMLQ 269 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~ 269 (275)
++|+.|++++|.-...+|..+. ++|++|++++| .+..+|. .+..+++|++|+++ ++.+|.. +..+++|+
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPK----QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccch----hhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 6666666666632123444332 56777777766 4556665 45578888888886 7778775 77888888
Q ss_pred EEEecC
Q 043856 270 ELSISE 275 (275)
Q Consensus 270 ~L~l~~ 275 (275)
+|++++
T Consensus 472 ~L~l~~ 477 (520)
T 2z7x_B 472 KIWLHT 477 (520)
T ss_dssp EEECCS
T ss_pred EEECcC
Confidence 888764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=105.03 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=116.8
Q ss_pred CCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCC
Q 043856 74 PLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
.++|++|+++++....+|. .+..+++|++|++++| .+..++. +..++ |++|+++++. +..++...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--------- 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV--------- 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhH---------
Confidence 4589999999998777654 4679999999999995 5566664 67888 9999999875 66665431
Q ss_pred CCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecC
Q 043856 150 DPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSC 228 (275)
Q Consensus 150 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ .++.+|.. +..+++|++|++++|
T Consensus 96 ----------~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 96 ----------FDKLTQLKELALNTNQ-LQSLPD-----GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ----------TTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ----------hcCccCCCEEEcCCCc-CcccCH-----hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 3478999999998753 444442 12336899999999998 68887765 678999999999998
Q ss_pred CCCccCCccccccCCCCCcccceecc----ccccchhhcCCCC
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTM 267 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp~~l~~L~~ 267 (275)
+. ...+++|++|+++ .+.+|.+++.++.
T Consensus 159 ~~-----------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PW-----------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CB-----------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Ce-----------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 42 2346788888885 4477877776653
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=124.57 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=96.5
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCC-------------cEEeeecCCCCCcCCCCCCcc-cceee
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNL-------------RDLKLVFCENCEHLPPLGKLP-LEKLE 126 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L-------------~~L~L~~c~~~~~lp~l~~L~-L~~L~ 126 (275)
+....+|++++.+++|++|++++|.... +|..++.+++| ++|++++| .+..+|.+ .+ |+.|+
T Consensus 21 n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~--~~~L~~L~ 97 (454)
T 1jl5_A 21 SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL--PPHLESLV 97 (454)
T ss_dssp -------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC--CTTCSEEE
T ss_pred CchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC--cCCCCEEE
Confidence 3446789999999999999999887654 88888888765 88888885 45666652 34 99999
Q ss_pred ccccccccccCccccccccccCCCCCCCCCCCCCCCC-CcccEeeccccccccccccccccccccCCCCcccEEeEccCc
Q 043856 127 LRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAF-PKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCN 205 (275)
Q Consensus 127 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~ 205 (275)
++++. ++.+|.... .+..+.++.. ....+..+ ++|+.|+++++. +..++ .+..+++|++|++++|
T Consensus 98 l~~n~-l~~lp~~~~---~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~n~-l~~lp-------~~~~l~~L~~L~l~~N- 163 (454)
T 1jl5_A 98 ASCNS-LTELPELPQ---SLKSLLVDNN-NLKALSDLPPLLEYLGVSNNQ-LEKLP-------ELQNSSFLKIIDVDNN- 163 (454)
T ss_dssp CCSSC-CSSCCCCCT---TCCEEECCSS-CCSCCCSCCTTCCEEECCSSC-CSSCC-------CCTTCTTCCEEECCSS-
T ss_pred ccCCc-CCccccccC---CCcEEECCCC-ccCcccCCCCCCCEEECcCCC-CCCCc-------ccCCCCCCCEEECCCC-
Confidence 98664 666664211 1111111100 00011112 456666665542 32232 1225666666666666
Q ss_pred ccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 206 KLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 206 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
+++.+|.. .++|++|++++| .+..+|. +..+++|++|+++ ++.+|.. .++|++|+++
T Consensus 164 ~l~~lp~~---~~~L~~L~L~~n-~l~~l~~-----~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 164 SLKKLPDL---PPSLEFIAAGNN-QLEELPE-----LQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAG 223 (454)
T ss_dssp CCSCCCCC---CTTCCEEECCSS-CCSSCCC-----CTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECC
T ss_pred cCcccCCC---cccccEEECcCC-cCCcCcc-----ccCCCCCCEEECCCCcCCcCCCC---cCcccEEECc
Confidence 45556543 246666666665 3444442 4566777777765 5555533 2466666664
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-13 Score=123.72 Aligned_cols=162 Identities=22% Similarity=0.269 Sum_probs=127.9
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
.+++|+.|.++++....+| .+..+++|+.|+|++| .+..++.+..++ |+.|+|++|. +..++ .
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~-~------------ 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKDLS-S------------ 104 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCT-T------------
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCCCh-h------------
Confidence 4678999999998877666 5789999999999995 556666688888 9999999875 65554 2
Q ss_pred CCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCC
Q 043856 152 SSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 152 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|+|++| .+
T Consensus 105 --------l~~l~~L~~L~Ls~N~-l~~l~-------~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l 165 (605)
T 1m9s_A 105 --------LKDLKKLKSLSLEHNG-ISDIN-------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QI 165 (605)
T ss_dssp --------STTCTTCCEEECTTSC-CCCCG-------GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CC
T ss_pred --------hccCCCCCEEEecCCC-CCCCc-------cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cC
Confidence 5578999999998764 33333 1236899999999998 68888 46888999999999988 45
Q ss_pred ccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 232 EELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 232 ~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
..++. +..+++|+.|+++ +..+| .+..+++|+.|+|++
T Consensus 166 ~~~~~-----l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 166 SDIVP-----LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 206 (605)
T ss_dssp CCCGG-----GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCS
T ss_pred CCchh-----hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccC
Confidence 54443 5678999999996 77776 688999999999864
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=122.01 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=48.5
Q ss_pred HHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccC
Q 043856 68 LEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
+..+..+++|++|++++|....+ |..+..+++|++|++++| .+..+|.. .++ |++|+++++. +..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~-l~~l~ 137 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-PMASLRHLDLSFND-FDVLP 137 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-CCTTCSEEECCSSC-CSBCC
T ss_pred hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-ccccCCEEECCCCC-ccccC
Confidence 35778888888888888876664 667778888888888884 45567655 677 8888888765 55543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-13 Score=116.61 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=57.9
Q ss_pred CCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc-ccccchhhcCCCCcc
Q 043856 192 IMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG-LKVLPDYLLRTTMLQ 269 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~-l~~lp~~l~~L~~L~ 269 (275)
..++|+.|.+.++..++.+|.. +..+++|++|++++| .++.+|.. .+..+++|+.+... ++.+| .+.++++|+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~ 249 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALM 249 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSCC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh---hhccchHhhhccCCCcCcCC-CchhCcChh
Confidence 4567888888877788888864 577889999998887 67777762 34455555555554 88888 478899999
Q ss_pred EEEecC
Q 043856 270 ELSISE 275 (275)
Q Consensus 270 ~L~l~~ 275 (275)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 988753
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-12 Score=118.17 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=56.8
Q ss_pred CCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCcc
Q 043856 193 MPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQ 269 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~ 269 (275)
+++|+.|++++| +++.+| ..+++|++|++++| .+..+|. .+++|++|+++ ++.+|..+.++++|+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRNQLTRLPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSSCCCSCCGGGGGSCTTC
T ss_pred CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCCCCCcCCHHHhhccccC
Confidence 467888888777 677777 34678888888887 5666665 47889999996 889999999999999
Q ss_pred EEEecC
Q 043856 270 ELSISE 275 (275)
Q Consensus 270 ~L~l~~ 275 (275)
.|++++
T Consensus 288 ~L~L~~ 293 (622)
T 3g06_A 288 TVNLEG 293 (622)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.8e-13 Score=122.25 Aligned_cols=192 Identities=18% Similarity=0.214 Sum_probs=125.3
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEE 145 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~ 145 (275)
+++.+..+++|+.|+++++....+|.++..+ +|++|++++|. +..+|. ..++ |+.|+++++......+. .....
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCc-ccccccCEEeCcCCcccccccc--ccCCC
Confidence 4566777889999999988877789888888 99999999854 446665 4566 77777776643222221 00000
Q ss_pred ccCCCCCCCCC------CCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCC
Q 043856 146 ISEDDPSSSSS------SSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQT 217 (275)
Q Consensus 146 ~~~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l 217 (275)
+..+.++.... ...+..+++|+.|+++++. +..++.. +..+++|+.|++++| .+..++ ..+..+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 420 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN------FLGLEQLEHLDFQHS-NLKQMSEFSVFLSL 420 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE------EETCTTCCEEECTTS-EEESCTTSCTTTTC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccccc------ccccCCCCEEEccCC-ccccccchhhhhcC
Confidence 11111110000 0113356677777776653 2223221 226888999999887 455543 357788
Q ss_pred CCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc--ccchhhcCCCCccEEEecC
Q 043856 218 TALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK--VLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~--~lp~~l~~L~~L~~L~l~~ 275 (275)
++|++|++++|......+. .+..+++|++|+++ +. .+|..++.+++|++|++++
T Consensus 421 ~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp TTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred CCCCEEeCcCCcccccchh----hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 9999999988854444444 56789999999996 43 6888899999999999874
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-12 Score=118.69 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=68.4
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccC-cCccccCCCCCccEEEEecCCCCccCCccc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK-ALPDYLLQTTALQELSIYSCENLEELPIPE 238 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~ 238 (275)
+..+++|+.|+++++.-...++. .....+++|+.|++++| +++ .+|..+. ++|++|++++| .++.+|.
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~-- 467 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNN-RIMSIPK-- 467 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSS-----CCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSS-CCCCCCT--
T ss_pred hcCCCCCCEEECCCCcCCCccCh-----hhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCC-cCcccCh--
Confidence 34567777777766542221331 12235677777777777 343 3444332 67888888877 5667776
Q ss_pred cccCCCCCcccceecc---ccccchh-hcCCCCccEEEecC
Q 043856 239 DRRTTDIPRLSSLRIG---LKVLPDY-LLRTTMLQELSISE 275 (275)
Q Consensus 239 ~~~~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~~L~l~~ 275 (275)
.+..+++|++|+++ ++.+|.. +..+++|+.|++++
T Consensus 468 --~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 468 --DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp --TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred --hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 55678888888886 7788876 78888888888864
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-12 Score=120.35 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=98.8
Q ss_pred HHhcCCCCCCCeEEecccCCcc-cc-cccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeecccccc--ccccCcccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNI-LP-KWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKS--VKRVGNEFL 141 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~-lp-~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~--l~~l~~~~~ 141 (275)
+..+..+++|++|++++|.... +| ..+..+++|++|++++|......+ .+..++ |+.|+++++.. +..+|..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 3445555566666665555432 33 344555566666665543211111 233444 55555554421 122233322
Q ss_pred ccccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccc-cc--cccccCCCCcccEEeEccCcccCcCccc-
Q 043856 142 GIEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYR-IT--RKENISIMPRLSSLKVGSCNKLKALPDY- 213 (275)
Q Consensus 142 ~~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-i~--~~~~~~~l~~L~~L~l~~c~~l~~lp~~- 213 (275)
....+..+.++. ......+..+++|+.|+++++. +..++.. +. ....+..+++|+.|++++| +++.+|..
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~ 555 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV 555 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 222222222111 1111224456666666666543 2222110 00 0011235677777777776 56666653
Q ss_pred cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhc-CCCCccEEEecC
Q 043856 214 LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLL-RTTMLQELSISE 275 (275)
Q Consensus 214 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~-~L~~L~~L~l~~ 275 (275)
+..+++|+.|++++| .++.+|.. .+..+++|+.|+++ ++.+|. .++ .+++|+.|++++
T Consensus 556 ~~~l~~L~~L~Ls~N-~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 556 FKDLFELKIIDLGLN-NLNTLPAS---VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred cccccCcceeECCCC-CCCcCCHh---HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 566777777777665 45555552 34566777777775 555554 344 567777777653
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.3e-12 Score=117.73 Aligned_cols=174 Identities=18% Similarity=0.179 Sum_probs=121.0
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
.+|+.|+++++....+|..+ +++|++|++++| .+..+| ..++ |+.|+++++. ++.+|. +.. .+..+.++.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 38899999888777788766 378999999884 556777 5567 9999998774 667776 332 222222221
Q ss_pred CC--CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCC
Q 043856 154 SS--SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 154 ~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 231 (275)
.. ..+. .+++|+.|+++++. +..++. .+++|+.|++++| +++.+|. +. ++|+.|++++| .+
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N-~L 192 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQ-LTMLPE---------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN-LL 192 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CC
T ss_pred CcCCCCCC--cCccccEEeCCCCc-cCcCCC---------cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC-CC
Confidence 11 1111 57789999998764 444442 4789999999998 6888988 65 89999999987 56
Q ss_pred ccCCccccccC-CCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 232 EELPIPEDRRT-TDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 232 ~~l~~~~~~~~-~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
+.+|. ....+ ...+.|+.|+++ ++.+|..+..+++|+.|++++
T Consensus 193 ~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 193 ESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp SSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred Cchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 67765 11000 111223999996 889999998999999999874
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=124.92 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=116.0
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeecccccccccc-Ccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRV-GNE 139 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l-~~~ 139 (275)
..+|. -+++|++|++++|.... .|..+.++++|++|++++|.....++ .++.++ |+.|+++++. +..+ |..
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~ 92 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDA 92 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTS
T ss_pred CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhH
Confidence 34565 35789999999988766 57788899999999999986666663 378888 9999999876 5555 433
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC--ccccCCC
Q 043856 140 FLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL--PDYLLQT 217 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~l~~l 217 (275)
+..+++|+.|+++++.-....+. ...+..+++|+.|++++| .+..+ +..++++
T Consensus 93 --------------------~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 93 --------------------FQGLFHLFELRLYFCGLSDAVLK----DGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKL 147 (844)
T ss_dssp --------------------SCSCSSCCCEECTTCCCSSCCST----TCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTC
T ss_pred --------------------ccCCcccCEeeCcCCCCCccccc----CccccccCCCCEEECCCC-cccccccchhHhhC
Confidence 45788888888887643222221 112336888888888887 56554 2457888
Q ss_pred CCccEEEEecCCCCccCCccccccCCCC--Ccccceecc----ccccchhhcCCCC------ccEEEec
Q 043856 218 TALQELSIYSCENLEELPIPEDRRTTDI--PRLSSLRIG----LKVLPDYLLRTTM------LQELSIS 274 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l--~~L~~L~l~----l~~lp~~l~~L~~------L~~L~l~ 274 (275)
++|++|++++|..-...+. .+..+ ++|+.|+++ ....|..++.+++ |+.|+++
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~----~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEH----ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp SSCCEEEEESSCCCCCCSG----GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred CCCCEEECCCCcCCeeCHH----HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence 8888888888643222222 23333 566666664 2223333333333 6666654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=121.18 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=50.9
Q ss_pred CCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc---ccccch-hhcCC
Q 043856 192 IMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRT 265 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L 265 (275)
.+++|+.|++++| ++..+ |..+..+++|++|++++|. +..+ +. .+..+++|++|+++ +..+|. .+..+
T Consensus 288 ~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 288 TLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNL-LGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEESCC-CSCCCSC----SCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred cCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCCCC-CCccCHH----HhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 5667777777776 45553 4456677777777777763 3333 33 56667788888775 555543 46777
Q ss_pred CCccEEEecC
Q 043856 266 TMLQELSISE 275 (275)
Q Consensus 266 ~~L~~L~l~~ 275 (275)
++|+.|++++
T Consensus 362 ~~L~~L~Ls~ 371 (844)
T 3j0a_A 362 EKLQTLDLRD 371 (844)
T ss_dssp CCCCEEEEET
T ss_pred CCCCEEECCC
Confidence 7888877753
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-14 Score=125.35 Aligned_cols=171 Identities=18% Similarity=0.162 Sum_probs=122.8
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCc-CC-CCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEH-LP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~-lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
++++.|+++++.....+..+.++++|++|++++|..... ++ .+..++ |++|++++|..-...+..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~------------ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT------------ 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH------------
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH------------
Confidence 578888888876655555566889999999998753222 44 256778 999999887522223322
Q ss_pred CCCCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCc--CccccCCCC-CccEEEEe
Q 043856 152 SSSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTT-ALQELSIY 226 (275)
Q Consensus 152 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~-~L~~L~l~ 226 (275)
+..+++|+.|++++|..+.. ++.. ...+++|+.|++++|+.++. ++..+..++ +|++|+++
T Consensus 138 --------l~~~~~L~~L~L~~~~~l~~~~l~~~------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 138 --------LAKNSNLVRLNLSGCSGFSEFALQTL------LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp --------HTTCTTCSEEECTTCBSCCHHHHHHH------HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred --------HhcCCCCCEEECCCCCCCCHHHHHHH------HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 44689999999999866553 3321 12689999999999966775 677778899 99999999
Q ss_pred cCC-CCc--cCCccccccCCCCCcccceecc----c-cccchhhcCCCCccEEEecC
Q 043856 227 SCE-NLE--ELPIPEDRRTTDIPRLSSLRIG----L-KVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 227 ~c~-~l~--~l~~~~~~~~~~l~~L~~L~l~----l-~~lp~~l~~L~~L~~L~l~~ 275 (275)
+|. .+. .++. .+..+++|++|+++ + ...+..+..+++|+.|++++
T Consensus 204 ~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 204 GYRKNLQKSDLST----LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp SCGGGSCHHHHHH----HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCcccCCHHHHHH----HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 985 332 2333 34568999999996 2 24566888999999999874
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-12 Score=113.80 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=30.9
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..++. .+++|+.|++++| +++.+| .++.+++|++|++++|
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~---------~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPD---------LPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCCc-CcccCC---------CcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence 4556667777776542 333332 2345666666655 455555 3555555555555554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=121.47 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=87.9
Q ss_pred HHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeecccccccccc--Ccccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRV--GNEFL 141 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l--~~~~~ 141 (275)
+..+..+++|++|++++|....+ |..++.+++|++|++++|. +..++. ++.++ |++|+++++. +..+ +..
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-- 118 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-- 118 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS--
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc-ccccchhhh--
Confidence 45678889999999998887664 4678899999999999854 444443 77888 9999998775 5433 222
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTAL 220 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L 220 (275)
+..+++|+.|++.++..+..++. ..+..+++|+.|++++| +++. +|..+..+++|
T Consensus 119 ------------------~~~l~~L~~L~L~~n~~~~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 119 ------------------FPNLTNLQTLRIGNVETFSEIRR-----IDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDI 174 (549)
T ss_dssp ------------------CTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEE
T ss_pred ------------------hhccCCccEEECCCCccccccCH-----hhhhcccccCeeeccCC-cccccChhhhhccccC
Confidence 44677777777776654444431 12225677777777776 3443 55555555555
Q ss_pred cEEEEecC
Q 043856 221 QELSIYSC 228 (275)
Q Consensus 221 ~~L~l~~c 228 (275)
++|++.++
T Consensus 175 ~~L~l~~n 182 (549)
T 2z81_A 175 HHLTLHLS 182 (549)
T ss_dssp EEEEEECS
T ss_pred ceEecccC
Confidence 55555544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=107.88 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=100.3
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
+..+++|++|++++|....+| .+..+++|++|++++| .+..++.+..++ |+.|+++++. ++.++..
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N~-l~~l~~~---------- 103 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRNR-LKNLNGI---------- 103 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CSCCTTC----------
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCCc-cCCcCcc----------
Confidence 445678999999888776677 6778899999999884 566666688888 9999998774 6655431
Q ss_pred CCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCC
Q 043856 150 DPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 150 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 229 (275)
.. ++|+.|+++++. +..++ .+..+++|+.|++++| +++.+| .+..+++|+.|++++|
T Consensus 104 -----------~~-~~L~~L~L~~N~-l~~~~-------~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N- 160 (263)
T 1xeu_A 104 -----------PS-ACLSRLFLDNNE-LRDTD-------SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN- 160 (263)
T ss_dssp -----------CC-SSCCEEECCSSC-CSBSG-------GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-
T ss_pred -----------cc-CcccEEEccCCc-cCCCh-------hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-
Confidence 12 678888887653 33332 1226778888888777 577776 5677788888888776
Q ss_pred CCccCCccccccCCCCCcccceecc
Q 043856 230 NLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 230 ~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+..+ . .+..+++|+.|+++
T Consensus 161 ~i~~~-~----~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 161 EITNT-G----GLTRLKKVNWIDLT 180 (263)
T ss_dssp CCCBC-T----TSTTCCCCCEEEEE
T ss_pred cCcch-H----HhccCCCCCEEeCC
Confidence 34444 2 46667777777774
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=116.69 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=40.8
Q ss_pred HHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~ 138 (275)
.+|..+. ++|++|++++|....+|. .+++|++|++++| .++.+|. .++ |++|+++++. +..+|.
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~l~~ 118 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNP-LTHLPA 118 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CCCCCC
T ss_pred ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCc-CCCCCC
Confidence 3444443 577777777777666665 5677777777774 4556665 456 7777777653 555554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-12 Score=99.77 Aligned_cols=137 Identities=25% Similarity=0.284 Sum_probs=101.7
Q ss_pred cCCCCCCCeEEecccCCc--ccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccc-cCccccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGN--ILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKR-VGNEFLGIEEI 146 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~-l~~~~~~~~~~ 146 (275)
-..+++|++|++++|... .+|..+..+++|++|++++|. +..++.+..++ |++|++++|. +.. +|..
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------- 90 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDML------- 90 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHH-------
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHH-------
Confidence 345689999999999877 588888899999999999965 55557788888 9999999875 444 4432
Q ss_pred cCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc----ccCCCCCccE
Q 043856 147 SEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD----YLLQTTALQE 222 (275)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~ 222 (275)
...+++|+.|+++++ .+..++. ...+..+++|+.|++++| .+..+|. .+..+++|++
T Consensus 91 -------------~~~l~~L~~L~Ls~N-~l~~~~~----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 91 -------------AEKLPNLTHLNLSGN-KLKDIST----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp -------------HHHCTTCCEEECBSS-SCCSSGG----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCE
T ss_pred -------------HhhCCCCCEEeccCC-ccCcchh----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcE
Confidence 335888999998876 3444431 012336888999999888 5777776 6778888999
Q ss_pred EEEecCCCCccCCc
Q 043856 223 LSIYSCENLEELPI 236 (275)
Q Consensus 223 L~l~~c~~l~~l~~ 236 (275)
|++++|. ...+|.
T Consensus 152 L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 152 LDGYDRE-DQEAPD 164 (168)
T ss_dssp ETTEETT-SCBCCS
T ss_pred ecCCCCC-hhhccc
Confidence 9888874 444554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=110.89 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=123.7
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
.++..+.++++....++ .+..+++|++|++++| .+..++.+..++ |+.|+++++. +..++.
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~--------------- 80 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQ-ISDLSP--------------- 80 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG---------------
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCc-cCCChh---------------
Confidence 34555666666655555 4668999999999995 677888888899 9999999875 666543
Q ss_pred CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCcc
Q 043856 154 SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
+..+++|+.|+++++. +..++. ... ++|+.|++++| +++.++ .+..+++|+.|++++| .++.
T Consensus 81 ------l~~l~~L~~L~L~~N~-l~~l~~-------~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~ 142 (263)
T 1xeu_A 81 ------LKDLTKLEELSVNRNR-LKNLNG-------IPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKS 142 (263)
T ss_dssp ------GTTCSSCCEEECCSSC-CSCCTT-------CCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCB
T ss_pred ------hccCCCCCEEECCCCc-cCCcCc-------ccc-CcccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCC
Confidence 3378999999999864 444442 113 89999999999 788886 5889999999999987 4666
Q ss_pred CCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 234 LPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++ .+..+++|++|+++ ++.+ ..+..+++|+.|++++
T Consensus 143 ~~-----~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 143 IV-----MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CG-----GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEE
T ss_pred Ch-----HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCC
Confidence 54 36679999999997 6666 5788999999999863
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.5e-12 Score=118.23 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=24.4
Q ss_pred cCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 241 RTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 241 ~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
.+..+++|++|+++ ++.+|. .+..+++|++|++++
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 513 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC
Confidence 45667778888875 666654 467788888887763
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=118.77 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=109.0
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
...||..+ ++++++|+++++....+| ..+.++++|++|+|++| .+..++. +..++ |++|+|+++. ++.+|..
T Consensus 43 l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~ 118 (635)
T 4g8a_A 43 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG 118 (635)
T ss_dssp CSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGG
T ss_pred cCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHH
Confidence 34577766 358999999999888765 57899999999999995 5666653 78899 9999999875 8888754
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc--CccccCCC
Q 043856 140 FLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQT 217 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l 217 (275)
. +.++++|+.|+++++. +..++. ..+..+++|+.|++++| .++. +|..++.+
T Consensus 119 ~-------------------f~~L~~L~~L~Ls~N~-l~~l~~-----~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l 172 (635)
T 4g8a_A 119 A-------------------FSGLSSLQKLVAVETN-LASLEN-----FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNL 172 (635)
T ss_dssp G-------------------GTTCTTCCEEECTTSC-CCCSTT-----CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGC
T ss_pred H-------------------hcCCCCCCEEECCCCc-CCCCCh-----hhhhcCcccCeeccccC-ccccCCCchhhccc
Confidence 2 3478999999998863 444442 12347899999999998 5664 57778889
Q ss_pred CCccEEEEecCCCCccCCc
Q 043856 218 TALQELSIYSCENLEELPI 236 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~ 236 (275)
++|++|++++| .+..++.
T Consensus 173 ~~L~~L~L~~N-~l~~~~~ 190 (635)
T 4g8a_A 173 TNLEHLDLSSN-KIQSIYC 190 (635)
T ss_dssp TTCCEEECCSS-CCCEECG
T ss_pred hhhhhhcccCc-ccccccc
Confidence 99999999987 4444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-13 Score=122.06 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=117.5
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcc----ccccc-------CCCCCCcEEeeecCCCCC----cCC-CCCCcc-cceee
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNI----LPKWL-------TSLTNLRDLKLVFCENCE----HLP-PLGKLP-LEKLE 126 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~----lp~~l-------~~l~~L~~L~L~~c~~~~----~lp-~l~~L~-L~~L~ 126 (275)
...+...+..+++|++|++++|.... +|..+ ..+++|++|++++|.... .+| .+..++ |+.|+
T Consensus 49 ~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~ 128 (386)
T 2ca6_A 49 ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128 (386)
T ss_dssp HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEE
Confidence 34466667777888888887763321 34433 577788888887754322 122 244556 77777
Q ss_pred ccccccccccCcc-ccc----c---------ccccCCCCCCCCCC--------CCCCCCCcccEeeccccccccc-----
Q 043856 127 LRDLKSVKRVGNE-FLG----I---------EEISEDDPSSSSSS--------SSVTAFPKLKSLEIKELDLLEE----- 179 (275)
Q Consensus 127 l~~~~~l~~l~~~-~~~----~---------~~~~~~~~~~~~~~--------~~l~~l~~L~~L~l~~~~~l~~----- 179 (275)
+++|. +...+.. +.. . ..+..+.++..... ..+..+++|+.|++.++. +..
T Consensus 129 L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~ 206 (386)
T 2ca6_A 129 LHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEH 206 (386)
T ss_dssp CCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHH
T ss_pred CcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHH
Confidence 77664 3211110 000 0 11111111111100 123457788888888764 221
Q ss_pred cccccccccccCCCCcccEEeEccCccc-----CcCccccCCCCCccEEEEecCCCCccC-----CccccccC--CCCCc
Q 043856 180 WNYRITRKENISIMPRLSSLKVGSCNKL-----KALPDYLLQTTALQELSIYSCENLEEL-----PIPEDRRT--TDIPR 247 (275)
Q Consensus 180 l~~~i~~~~~~~~l~~L~~L~l~~c~~l-----~~lp~~l~~l~~L~~L~l~~c~~l~~l-----~~~~~~~~--~~l~~ 247 (275)
+.. ..+..+++|+.|++++| .+ ..+|..+..+++|++|++++|. +... +. .+ ..+++
T Consensus 207 l~~-----~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~----~l~~~~~~~ 275 (386)
T 2ca6_A 207 LLL-----EGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVD----AFSKLENIG 275 (386)
T ss_dssp HHH-----TTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHH----HHHTCSSCC
T ss_pred HHH-----HHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHH----HHhhccCCC
Confidence 111 02226889999999988 46 4577778889999999998885 3322 22 22 34889
Q ss_pred ccceecc---ccc-----cchhh-cCCCCccEEEecC
Q 043856 248 LSSLRIG---LKV-----LPDYL-LRTTMLQELSISE 275 (275)
Q Consensus 248 L~~L~l~---l~~-----lp~~l-~~L~~L~~L~l~~ 275 (275)
|++|+++ ++. +|..+ .++++|+.|++++
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 9999996 554 88777 6789999999864
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-11 Score=105.85 Aligned_cols=177 Identities=18% Similarity=0.184 Sum_probs=97.5
Q ss_pred HHHHHH-hcCCCCCCCeEEecccCCcc-ccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccC
Q 043856 64 DEQLLE-ALQPPLNVEKLWIIFYGGNI-LPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 64 ~~~l~~-~l~~l~~L~~L~l~~~~~~~-lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
+..+|. ++..+++|++|++++|.... +|. .+.++++|+.+.+.+++.+..++. +..++ |++|+++++. +..++
T Consensus 42 i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~ 120 (350)
T 4ay9_X 42 LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLP 120 (350)
T ss_dssp CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCC
T ss_pred CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCC
Confidence 345664 57889999999999988655 553 456888888776666677776653 67788 8888888664 55554
Q ss_pred ccc-cccccccC--------------------------CCCCCC---CCCCCCCCCCcccEeeccccccccccccccccc
Q 043856 138 NEF-LGIEEISE--------------------------DDPSSS---SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRK 187 (275)
Q Consensus 138 ~~~-~~~~~~~~--------------------------~~~~~~---~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~ 187 (275)
... ........ +.++.. .........++|+.|.+.++..++.++.
T Consensus 121 ~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~----- 195 (350)
T 4ay9_X 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN----- 195 (350)
T ss_dssp CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT-----
T ss_pred chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH-----
Confidence 321 10000000 000000 0001111223444444444444444332
Q ss_pred cccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 188 ENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 188 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
..+..+++|+.|+++++ +++.+|.. .+.+|+.|.+.++..++.+|. +..+++|+.+++.
T Consensus 196 ~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 196 DVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLT 254 (350)
T ss_dssp TTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECS
T ss_pred HHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC-----chhCcChhhCcCC
Confidence 12234566666666666 56666653 255666666666666666664 4456666666653
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-11 Score=113.20 Aligned_cols=194 Identities=18% Similarity=0.153 Sum_probs=118.9
Q ss_pred CCCCCCCeEEecccCCcc---cccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcc-ccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNE-FLGIEEI 146 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~-~~~~~~~ 146 (275)
..+++|+.|.++.+.... .|.....+.+|+++++..+......+.+..++ |+.+++..+......+.. +.....+
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 346677777777665432 33444466667777666643333333344455 666666544432222211 1111100
Q ss_pred cCCCCC----CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCcc
Q 043856 147 SEDDPS----SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQ 221 (275)
Q Consensus 147 ~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~ 221 (275)
....++ ..........+++|+.|++.++.....+.. ..+..+++|+.|++++| +++.+ |..+.++++|+
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-----~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCc-----hhhhhccccCEEECCCC-ccCCcChHHHcCCCCCC
Confidence 000000 001122345678999999988765544332 13347899999999999 68775 56788999999
Q ss_pred EEEEecCCCCccCCccccccCCCCCcccceecc---cccc-chhhcCC-CCccEEEecC
Q 043856 222 ELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRT-TMLQELSISE 275 (275)
Q Consensus 222 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L-~~L~~L~l~~ 275 (275)
+|++++| .+..++.. .+..+++|++|+++ +..+ |..+.++ ++|+.|++++
T Consensus 522 ~L~Ls~N-~l~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 522 VLNMSHN-NFFSLDTF---PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EEECTTS-CCCBCCCG---GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred EEECCCC-cCCCCChh---HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 9999987 56666552 56779999999996 6655 5577777 6899999874
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=100.58 Aligned_cols=134 Identities=21% Similarity=0.247 Sum_probs=97.1
Q ss_pred HHHHHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
..+|..+. ++|++|+++++....+ |..+..+++|++|++++| .+..+|. +..++ |+.|+++++. ++.++...
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~ 107 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAV 107 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CCccChhH
Confidence 34555443 7899999998887774 677888999999999984 4566664 56788 9999998764 66665431
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCC
Q 043856 141 LGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTA 219 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~ 219 (275)
+..+++|+.|+++++. +..++..+ ..+++|+.|+++++ +++.+|. .+..+++
T Consensus 108 -------------------~~~l~~L~~L~Ls~N~-l~~lp~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 108 -------------------FDRLVHLKELFMCCNK-LTELPRGI------ERLTHLTHLALDQN-QLKSIPHGAFDRLSS 160 (229)
T ss_dssp -------------------TTTCTTCCEEECCSSC-CCSCCTTG------GGCTTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred -------------------hCcchhhCeEeccCCc-ccccCccc------ccCCCCCEEECCCC-cCCccCHHHHhCCCC
Confidence 3467888888888653 54554322 26788889988887 6777764 4677888
Q ss_pred ccEEEEecCC
Q 043856 220 LQELSIYSCE 229 (275)
Q Consensus 220 L~~L~l~~c~ 229 (275)
|+.|++.+++
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 8888888875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-14 Score=132.36 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=109.5
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccC-------------Ccc-cccccCCCCCCcEEe-eecCCCCCcCCC-------CCC
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYG-------------GNI-LPKWLTSLTNLRDLK-LVFCENCEHLPP-------LGK 119 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~-------------~~~-lp~~l~~l~~L~~L~-L~~c~~~~~lp~-------l~~ 119 (275)
+.+..+|+.++.+++|+.|+++++. ... .|..++.+++|+.|+ ++. +.+..++. +..
T Consensus 359 n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~ 437 (567)
T 1dce_A 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLK 437 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccchhhhhhhhcccccc
Confidence 3445666666666666666665442 111 344445555555555 222 21111111 122
Q ss_pred cc---cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcc
Q 043856 120 LP---LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRL 196 (275)
Q Consensus 120 L~---L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L 196 (275)
++ |+.|+++++. ++.+|. +..+++|+.|+++++. +..+|..+ ..+++|
T Consensus 438 l~~~~L~~L~Ls~n~-l~~lp~---------------------~~~l~~L~~L~Ls~N~-l~~lp~~~------~~l~~L 488 (567)
T 1dce_A 438 MEYADVRVLHLAHKD-LTVLCH---------------------LEQLLLVTHLDLSHNR-LRALPPAL------AALRCL 488 (567)
T ss_dssp HHHTTCSEEECTTSC-CSSCCC---------------------GGGGTTCCEEECCSSC-CCCCCGGG------GGCTTC
T ss_pred cCccCceEEEecCCC-CCCCcC---------------------ccccccCcEeecCccc-ccccchhh------hcCCCC
Confidence 22 5666666553 555542 4467889999988753 54555433 268899
Q ss_pred cEEeEccCcccCcCccccCCCCCccEEEEecCCCCccC--CccccccCCCCCcccceecc---ccccchh----hcCCCC
Q 043856 197 SSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEEL--PIPEDRRTTDIPRLSSLRIG---LKVLPDY----LLRTTM 267 (275)
Q Consensus 197 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l--~~~~~~~~~~l~~L~~L~l~---l~~lp~~----l~~L~~ 267 (275)
+.|++++| +++.+| .++.+++|+.|++++| .+..+ |. .+..+++|+.|+++ +..+|.. +..+++
T Consensus 489 ~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~----~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 489 EVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQ----PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp CEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTG----GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred CEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcH----HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 99999888 688888 7888999999999887 55555 55 57778899999986 6666543 244788
Q ss_pred ccEEEe
Q 043856 268 LQELSI 273 (275)
Q Consensus 268 L~~L~l 273 (275)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 888864
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-11 Score=97.35 Aligned_cols=145 Identities=18% Similarity=0.139 Sum_probs=110.9
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcC-C-CCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHL-P-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~l-p-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
..+.++.+++....+|..+. ++|++|++++|. +..+ | .+..++ |+.|+++++. ++.++...
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~------------ 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV------------ 83 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT------------
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhh------------
Confidence 35567777777666887654 899999999954 4444 3 377888 9999999875 67666431
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCc
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ +++.+|..+..+++|+.|++++| .+.
T Consensus 84 -------~~~l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~ 148 (229)
T 3e6j_A 84 -------FDSLTQLTVLDLGTN-QLTVLPS-----AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLK 148 (229)
T ss_dssp -------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCC
T ss_pred -------cccCCCcCEEECCCC-cCCccCh-----hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCC
Confidence 347899999999886 4555442 12336899999999998 79999999999999999999987 566
Q ss_pred cCCccccccCCCCCcccceecc
Q 043856 233 ELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.++.. .+..+++|+.|+++
T Consensus 149 ~~~~~---~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 149 SIPHG---AFDRLSSLTHAYLF 167 (229)
T ss_dssp CCCTT---TTTTCTTCCEEECT
T ss_pred ccCHH---HHhCCCCCCEEEee
Confidence 66652 46778999999985
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-13 Score=119.10 Aligned_cols=204 Identities=16% Similarity=0.131 Sum_probs=125.4
Q ss_pred hHHHHHHhcCCCCCCCeEEecccCCcc-----cccccCCCCCCcEEeeecCC--CCC-cCCC--------CCCcc-ccee
Q 043856 63 KDEQLLEALQPPLNVEKLWIIFYGGNI-----LPKWLTSLTNLRDLKLVFCE--NCE-HLPP--------LGKLP-LEKL 125 (275)
Q Consensus 63 ~~~~l~~~l~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~c~--~~~-~lp~--------l~~L~-L~~L 125 (275)
....++..+..+++|++|++++|.... ++..+.++++|++|++++|. .+. .+|. +..++ |++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 445677888889999999999987544 34457789999999999962 222 2332 35678 9999
Q ss_pred eccccccccc-----cCccccccccccCCCCCCCCCC--------CCCCCC---------CcccEeeccccccc-ccccc
Q 043856 126 ELRDLKSVKR-----VGNEFLGIEEISEDDPSSSSSS--------SSVTAF---------PKLKSLEIKELDLL-EEWNY 182 (275)
Q Consensus 126 ~l~~~~~l~~-----l~~~~~~~~~~~~~~~~~~~~~--------~~l~~l---------~~L~~L~l~~~~~l-~~l~~ 182 (275)
+++++. +.. ++..+.....+..+.++..... ..+..+ ++|+.|+++++.-- ..++.
T Consensus 100 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 100 RLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp ECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred ECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 999875 433 3322222222222222111110 001112 67777777765421 11110
Q ss_pred ccccccccCCCCcccEEeEccCcccC------cCccccCCCCCccEEEEecCCCC----ccCCccccccCCCCCccccee
Q 043856 183 RITRKENISIMPRLSSLKVGSCNKLK------ALPDYLLQTTALQELSIYSCENL----EELPIPEDRRTTDIPRLSSLR 252 (275)
Q Consensus 183 ~i~~~~~~~~l~~L~~L~l~~c~~l~------~lp~~l~~l~~L~~L~l~~c~~l----~~l~~~~~~~~~~l~~L~~L~ 252 (275)
+. ..+..+++|+.|++++| .++ -+|..+..+++|++|++++|..- ..++. .+..+++|++|+
T Consensus 179 -l~--~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~ 250 (386)
T 2ca6_A 179 -WA--KTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELG 250 (386)
T ss_dssp -HH--HHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEE
T ss_pred -HH--HHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEE
Confidence 00 01125788999999988 566 23446778899999999888521 34444 456788999999
Q ss_pred cc---cc-----ccchhhc--CCCCccEEEecC
Q 043856 253 IG---LK-----VLPDYLL--RTTMLQELSISE 275 (275)
Q Consensus 253 l~---l~-----~lp~~l~--~L~~L~~L~l~~ 275 (275)
++ ++ .+|.++. .+++|+.|++++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcC
Confidence 96 33 2566773 489999999864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-14 Score=133.30 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=125.6
Q ss_pred CCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCC-------------CCCcCC-CCCCcc-cceee-ccccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCE-------------NCEHLP-PLGKLP-LEKLE-LRDLKSVKR 135 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~-------------~~~~lp-~l~~L~-L~~L~-l~~~~~l~~ 135 (275)
..+++|+.|+++++....+|..++.+++|+.|++.+|. .....| .++.++ |+.|+ ++ ++.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~-~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-hcccch
Confidence 56789999999998877799999999999999986542 122222 144556 77766 33 222333
Q ss_pred cCccccccccccCCCCCCCCCCCCCC--CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc
Q 043856 136 VGNEFLGIEEISEDDPSSSSSSSSVT--AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY 213 (275)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 213 (275)
++.-+..... +. ....|+.|+++++ .+..++. +..+++|+.|++++| +++.+|..
T Consensus 425 L~~l~l~~n~--------------i~~l~~~~L~~L~Ls~n-~l~~lp~-------~~~l~~L~~L~Ls~N-~l~~lp~~ 481 (567)
T 1dce_A 425 LRSKFLLENS--------------VLKMEYADVRVLHLAHK-DLTVLCH-------LEQLLLVTHLDLSHN-RLRALPPA 481 (567)
T ss_dssp HHHHHHHHHH--------------HHHHHHTTCSEEECTTS-CCSSCCC-------GGGGTTCCEEECCSS-CCCCCCGG
T ss_pred hhhhhhhccc--------------ccccCccCceEEEecCC-CCCCCcC-------ccccccCcEeecCcc-cccccchh
Confidence 3211110000 11 1236889999876 4555542 236899999999998 78899999
Q ss_pred cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cccc--chhhcCCCCccEEEecC
Q 043856 214 LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL--PDYLLRTTMLQELSISE 275 (275)
Q Consensus 214 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l--p~~l~~L~~L~~L~l~~ 275 (275)
++.+++|+.|++++| .++.+| .+..+++|+.|+++ ++.+ |..++.+++|+.|++++
T Consensus 482 ~~~l~~L~~L~Ls~N-~l~~lp-----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 482 LAALRCLEVLQASDN-ALENVD-----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG-----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred hhcCCCCCEEECCCC-CCCCCc-----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 999999999999987 566666 37789999999996 7777 89999999999999974
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=95.43 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=100.4
Q ss_pred CCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC---CCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 77 VEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP---LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 77 L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~---l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
-+.++++++....+|..+. ..+++|++++| .+..++. +..++ |++|+++++. ++.++...
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~------------ 76 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGA------------ 76 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTT------------
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHH------------
Confidence 4578888877777887653 45689999984 4555432 66788 9999998765 66665421
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+ |..+..+++|++|++++| .+
T Consensus 77 -------~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l 141 (220)
T 2v70_A 77 -------FEGASGVNEILLTSNR-LENVQH-----KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QI 141 (220)
T ss_dssp -------TTTCTTCCEEECCSSC-CCCCCG-----GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CC
T ss_pred -------hCCCCCCCEEECCCCc-cCccCH-----hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cC
Confidence 4478889999988754 333332 12336888999999888 57765 567788899999998887 45
Q ss_pred ccC-CccccccCCCCCcccceecc
Q 043856 232 EEL-PIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 232 ~~l-~~~~~~~~~~l~~L~~L~l~ 254 (275)
..+ |. .+..+++|++|+++
T Consensus 142 ~~~~~~----~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 142 TTVAPG----AFDTLHSLSTLNLL 161 (220)
T ss_dssp CCBCTT----TTTTCTTCCEEECC
T ss_pred CEECHH----HhcCCCCCCEEEec
Confidence 555 43 56678888888885
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-12 Score=96.13 Aligned_cols=127 Identities=24% Similarity=0.290 Sum_probs=83.9
Q ss_pred CCCCCCCeEEecccCCc--ccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccc-cCcccccccccc
Q 043856 72 QPPLNVEKLWIIFYGGN--ILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKR-VGNEFLGIEEIS 147 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~-l~~~~~~~~~~~ 147 (275)
...++|++|++++|... .+|..+..+++|++|++++| .+..++.++.++ |++|+++++. +.. +|..
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-------- 83 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVL-------- 83 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHH--------
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHH--------
Confidence 34578999999999877 58888889999999999985 455556677788 8888888765 443 3322
Q ss_pred CCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc----ccCCCCCccEE
Q 043856 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD----YLLQTTALQEL 223 (275)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L 223 (275)
...+++|+.|+++++. +..++. ...+..+++|+.|++++| .++.+|. .+..+++|+.|
T Consensus 84 ------------~~~l~~L~~L~ls~N~-i~~~~~----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 84 ------------AEKCPNLTHLNLSGNK-IKDLST----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ------------HHHCTTCCEEECTTSC-CCSHHH----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEE
T ss_pred ------------hhhCCCCCEEECCCCc-CCChHH----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccc
Confidence 2246677777776653 333220 011225677777777776 4666554 45566677766
Q ss_pred EEe
Q 043856 224 SIY 226 (275)
Q Consensus 224 ~l~ 226 (275)
+++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.7e-11 Score=103.50 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=69.6
Q ss_pred CCCeEEecccCCcccc-cccC-CCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCC
Q 043856 76 NVEKLWIIFYGGNILP-KWLT-SLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDD 150 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp-~~l~-~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (275)
.++.|+++++....+| .++. .+++|++|+|++| .+..++ .+..++ |++|+++++. ++.++...
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---------- 107 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFL---------- 107 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT----------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHH----------
Confidence 4666666666655533 3344 6666666666663 344443 255566 6666666553 55444321
Q ss_pred CCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcccc----CCCCCccEEEEe
Q 043856 151 PSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYL----LQTTALQELSIY 226 (275)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~ 226 (275)
+..+++|+.|+++++. +..+. ...+..+++|+.|++++| +++.+|..+ ..+++|+.|+++
T Consensus 108 ---------~~~l~~L~~L~L~~N~-i~~~~-----~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 108 ---------FSDLQALEVLLLYNNH-IVVVD-----RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp ---------TTTCTTCCEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECC
T ss_pred ---------hCCCcCCCEEECCCCc-ccEEC-----HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECC
Confidence 2355666666666543 22221 112224666666666665 566665543 346666666666
Q ss_pred cCCCCccCC
Q 043856 227 SCENLEELP 235 (275)
Q Consensus 227 ~c~~l~~l~ 235 (275)
+| .+..++
T Consensus 172 ~N-~l~~l~ 179 (361)
T 2xot_A 172 SN-KLKKLP 179 (361)
T ss_dssp SS-CCCCCC
T ss_pred CC-CCCccC
Confidence 55 344444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-11 Score=96.82 Aligned_cols=134 Identities=15% Similarity=0.207 Sum_probs=96.1
Q ss_pred HHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcC-C-CCCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHL-P-PLGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~l-p-~l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|..+. ++|+.|+++++....+|. .+..+++|++|++++| .+..+ | .+..++ |++|+++++. ++.+|...
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~- 99 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKSL- 99 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTT-
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhH-
Confidence 3455443 689999999888777554 6778899999999985 44444 3 477788 9999998764 76766542
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTAL 220 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L 220 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.++. .+..+++|
T Consensus 100 ------------------f~~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 100 ------------------FEGLFSLQLLLLNANK-INCLRV-----DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAI 154 (220)
T ss_dssp ------------------TTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred ------------------ccCCCCCCEEECCCCC-CCEeCH-----HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCC
Confidence 3468889999988753 433321 12336889999999888 6777765 47778899
Q ss_pred cEEEEecCC
Q 043856 221 QELSIYSCE 229 (275)
Q Consensus 221 ~~L~l~~c~ 229 (275)
++|++++++
T Consensus 155 ~~L~L~~N~ 163 (220)
T 2v9t_B 155 QTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999988875
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-10 Score=93.82 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=99.8
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSS 154 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (275)
+.++.+++....+|..+. ++|+.|++++| .+..++ .+..++ |+.|+++++. +..++..
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~--------------- 74 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPD--------------- 74 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTT---------------
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHH---------------
Confidence 566777776666787654 68999999984 555555 367788 9999998775 5555322
Q ss_pred CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCcc
Q 043856 155 SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 155 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
.+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+ |..+..+++|+.|++++| .+..
T Consensus 75 ----~~~~l~~L~~L~Ls~N~-l~~l~~-----~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 142 (220)
T 2v9t_B 75 ----AFQGLRSLNSLVLYGNK-ITELPK-----SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQT 142 (220)
T ss_dssp ----TTTTCSSCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred ----HhhCCcCCCEEECCCCc-CCccCH-----hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCE
Confidence 14478889999888753 444442 12236888999999888 67775 456778889999998887 4555
Q ss_pred CCccccccCCCCCcccceecc
Q 043856 234 LPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~ 254 (275)
++.. .+..+++|++|+++
T Consensus 143 ~~~~---~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 143 IAKG---TFSPLRAIQTMHLA 160 (220)
T ss_dssp CCTT---TTTTCTTCCEEECC
T ss_pred ECHH---HHhCCCCCCEEEeC
Confidence 5542 46678888888885
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=96.06 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=87.5
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
+..+.+|+.|++++|....+|......++|++|++++| .+..++.++.++ |++|+++++. +..+|..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~--------- 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGL--------- 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCH---------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcch---------
Confidence 45677899999998877667543333348999999885 455556777788 8888888764 66665431
Q ss_pred CCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc----cCCCCCccEEEE
Q 043856 150 DPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY----LLQTTALQELSI 225 (275)
Q Consensus 150 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----l~~l~~L~~L~l 225 (275)
+..+++|+.|+++++. +..++. ......+++|+.|++++| .+..+|.. +..+++|+.|++
T Consensus 84 ----------~~~l~~L~~L~L~~N~-i~~~~~----~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 84 ----------DQALPDLTELILTNNS-LVELGD----LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ----------HHHCTTCCEEECCSCC-CCCGGG----GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ----------hhcCCCCCEEECCCCc-CCcchh----hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC
Confidence 1357778888877653 333332 011225777888888777 46666664 667777777777
Q ss_pred ecCC
Q 043856 226 YSCE 229 (275)
Q Consensus 226 ~~c~ 229 (275)
++++
T Consensus 148 ~~n~ 151 (176)
T 1a9n_A 148 QKVK 151 (176)
T ss_dssp EECC
T ss_pred CcCC
Confidence 7664
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-11 Score=92.72 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccEEEEecCCCCccCC--c
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSCENLEELP--I 236 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~l~--~ 236 (275)
+..+++|+.|+++++. +..+. .+..+++|+.|++++| .++. +|..+..+++|++|++++|. +..++ .
T Consensus 38 ~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~ 107 (149)
T 2je0_A 38 TDEFEELEFLSTINVG-LTSIA-------NLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIE 107 (149)
T ss_dssp CTTCTTCCEEECTTSC-CCCCT-------TCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHG
T ss_pred HhhcCCCcEEECcCCC-CCCch-------hhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCc-CCChHHHH
Confidence 3467788888887653 33331 2236788888888887 5666 77666668888888888774 44443 3
Q ss_pred cccccCCCCCcccceecc---ccccch----hhcCCCCccEEEecC
Q 043856 237 PEDRRTTDIPRLSSLRIG---LKVLPD----YLLRTTMLQELSISE 275 (275)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~---l~~lp~----~l~~L~~L~~L~l~~ 275 (275)
.+..+++|++|+++ +..+|. .+..+++|+.|++++
T Consensus 108 ----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 108 ----PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ----GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ----HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 45678888888885 666664 678899999998874
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-10 Score=90.24 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=104.4
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSS 154 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (275)
+.++.+++....+|..+ .++|++|++++| .+..++. +..++ |++|+++++. ++.++...
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------- 71 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGV-------------- 71 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT--------------
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhh--------------
Confidence 45666666666677554 568999999995 4555554 67888 9999999764 66665431
Q ss_pred CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCCcc
Q 043856 155 SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 155 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~ 233 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|.. +..+++|++|++++| .+..
T Consensus 72 -----~~~l~~L~~L~Ls~n~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~ 138 (208)
T 2o6s_A 72 -----FNKLTSLTYLNLSTNQ-LQSLPN-----GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKS 138 (208)
T ss_dssp -----TTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred -----cCCCCCcCEEECCCCc-CCccCH-----hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccce
Confidence 3478899999998763 444432 12336899999999998 68887765 678999999999987 5556
Q ss_pred CCccccccCCCCCcccceecc
Q 043856 234 LPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~ 254 (275)
++.. .+..+++|++|+++
T Consensus 139 ~~~~---~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 139 VPDG---VFDRLTSLQYIWLH 156 (208)
T ss_dssp CCTT---TTTTCTTCCEEECC
T ss_pred eCHH---HhccCCCccEEEec
Confidence 6652 46678999999986
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-11 Score=93.50 Aligned_cols=135 Identities=25% Similarity=0.386 Sum_probs=76.1
Q ss_pred CCCCCcEEeeecCCCC-CcCCCCCC-cc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecc
Q 043856 96 SLTNLRDLKLVFCENC-EHLPPLGK-LP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIK 172 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~-~~lp~l~~-L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 172 (275)
..++|++|++++|... ..+|..-. ++ |+.|++++|. ++.+ .. +..+++|+.|+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~--------------------~~~l~~L~~L~Ls 79 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SN--------------------LPKLPKLKKLELS 79 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SS--------------------CCCCSSCCEEEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hh--------------------hccCCCCCEEECc
Confidence 4577888888885432 25555432 34 7777777664 4444 11 4467777777776
Q ss_pred ccccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccc
Q 043856 173 ELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSS 250 (275)
Q Consensus 173 ~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~ 250 (275)
++.-...++.. ...+++|+.|++++| +++.+| ..+..+++|+.|++++|+ +..++......+..+++|++
T Consensus 80 ~N~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 80 ENRIFGGLDML------AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCCCSCCCHH------HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCE
T ss_pred CCcCchHHHHH------HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcE
Confidence 65422112211 113677777777777 566665 566677777777777763 33333200013445677777
Q ss_pred eecc---ccccch
Q 043856 251 LRIG---LKVLPD 260 (275)
Q Consensus 251 L~l~---l~~lp~ 260 (275)
|+++ +..+|.
T Consensus 152 L~l~~n~~~~~~~ 164 (168)
T 2ell_A 152 LDGYDREDQEAPD 164 (168)
T ss_dssp ETTEETTSCBCCS
T ss_pred ecCCCCChhhccc
Confidence 7664 445553
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-10 Score=91.84 Aligned_cols=134 Identities=12% Similarity=0.198 Sum_probs=101.0
Q ss_pred HHHHhcCCCCCCCeEEecccCCccc-c-cccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNIL-P-KWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~l-p-~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
.+|..+ ...+++|+++++....+ | ..+..+++|++|++++| .+..++ .+..++ |++|+++++. +..++...
T Consensus 25 ~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 100 (220)
T 2v70_A 25 KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHKM 100 (220)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGG
T ss_pred cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHhH
Confidence 456555 34678999999987775 3 34779999999999995 455555 378888 9999999875 66665432
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCC
Q 043856 141 LGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTA 219 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~ 219 (275)
+..+++|+.|+++++. +..+.. ..+..+++|+.|++++| +++.+ |..+..+++
T Consensus 101 -------------------~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 101 -------------------FKGLESLKTLMLRSNR-ITCVGN-----DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHS 154 (220)
T ss_dssp -------------------GTTCSSCCEEECTTSC-CCCBCT-----TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTT
T ss_pred -------------------hcCCcCCCEEECCCCc-CCeECH-----hHcCCCccCCEEECCCC-cCCEECHHHhcCCCC
Confidence 4478999999998764 433321 12337899999999998 68776 778889999
Q ss_pred ccEEEEecCC
Q 043856 220 LQELSIYSCE 229 (275)
Q Consensus 220 L~~L~l~~c~ 229 (275)
|++|++++|+
T Consensus 155 L~~L~L~~N~ 164 (220)
T 2v70_A 155 LSTLNLLANP 164 (220)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEecCcC
Confidence 9999999875
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=100.90 Aligned_cols=167 Identities=19% Similarity=0.195 Sum_probs=117.4
Q ss_pred CCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CC-Ccc-cceeeccccccccccCccccccccccCCCCC
Q 043856 77 VEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LG-KLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 77 L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~-~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
-+.++.+++....+|..+. ..++.|+|++| .+..++. +. .++ |+.|+++++. +..++...
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~------------ 83 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEA------------ 83 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTT------------
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhh------------
Confidence 3577887777766887653 46899999994 5555553 44 788 9999999775 76665431
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|++++| ++..+ |..+..+++|+.|++++| .+
T Consensus 84 -------~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l 148 (361)
T 2xot_A 84 -------FVPVPNLRYLDLSSNH-LHTLDE-----FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QI 148 (361)
T ss_dssp -------TTTCTTCCEEECCSSC-CCEECT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred -------ccCCCCCCEEECCCCc-CCcCCH-----HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cC
Confidence 4478899999998754 554442 12336899999999998 67775 567888999999999887 67
Q ss_pred ccCCccccccCCCCCcccceecc---ccccch-hhcCCCC--ccEEEec
Q 043856 232 EELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTM--LQELSIS 274 (275)
Q Consensus 232 ~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~--L~~L~l~ 274 (275)
..+|......+..+++|+.|+++ ++.+|. .+..+++ |+.|+++
T Consensus 149 ~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 77776321112568999999996 777773 5666665 3667765
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-10 Score=104.81 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=106.8
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCccccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
+|..+ +++|++|++++|....+| ..+++|++|++++| .+..+|. ++ |+.|+++++. ++.+|. ...
T Consensus 74 lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~---l~~~L~~L~Ls~N~-l~~lp~---~l~ 140 (571)
T 3cvr_A 74 LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE---LPASLKHLDVDNNQ-LTMLPE---LPA 140 (571)
T ss_dssp CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCT
T ss_pred cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch---hhcCCCEEECCCCc-CCCCCC---cCc
Confidence 45444 367888888888776677 45778888888874 4555665 33 7788887664 555664 111
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCc----
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTAL---- 220 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L---- 220 (275)
.+..+.++.......-..+++|+.|+++++. +..++. + . ++|+.|++++| +++.+|. +.. +|
T Consensus 141 ~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~-L~~lp~-l-------~-~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~ 206 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPELPTSLEVLSVRNNQ-LTFLPE-L-------P-ESLEALDVSTN-LLESLPA-VPV--RNHHSE 206 (571)
T ss_dssp TCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCC-C-------C-TTCCEEECCSS-CCSSCCC-CC---------
T ss_pred cccEEeCCCCccCcCCCcCCCcCEEECCCCC-CCCcch-h-------h-CCCCEEECcCC-CCCchhh-HHH--hhhccc
Confidence 1222222111100001146799999998864 444442 1 2 89999999998 7889988 553 77
Q ss_pred ---cEEEEecCCCCccCCccccccCCCCCcccceecc---c-cccchhhcCC
Q 043856 221 ---QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L-KVLPDYLLRT 265 (275)
Q Consensus 221 ---~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l-~~lp~~l~~L 265 (275)
+.|++++| .+..+|. .+..+++|++|+++ + +.+|..++.+
T Consensus 207 ~~L~~L~Ls~N-~l~~lp~----~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 207 ETEIFFRCREN-RITHIPE----NILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CCEEEECCSS-CCCCCCG----GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ccceEEecCCC-cceecCH----HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 99999987 6778887 56679999999996 3 3456555543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-11 Score=108.21 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=44.1
Q ss_pred cccEEeEccCcccCcCcc-----ccCCC-CCccEEEEecCCCCcc-----CCccccccCCC-CCcccceecc---cccc-
Q 043856 195 RLSSLKVGSCNKLKALPD-----YLLQT-TALQELSIYSCENLEE-----LPIPEDRRTTD-IPRLSSLRIG---LKVL- 258 (275)
Q Consensus 195 ~L~~L~l~~c~~l~~lp~-----~l~~l-~~L~~L~l~~c~~l~~-----l~~~~~~~~~~-l~~L~~L~l~---l~~l- 258 (275)
+|+.|++++| +++..+. .+..+ ++|++|++++|. +.. ++. .+.. .++|++|+++ ++..
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~----~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAY----IFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHH----HHHHSCTTCCEEECCSSCCCCCC
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHH----HHhcCCCCceEEECcCCCCCcHH
Confidence 7888888877 4654331 33444 478888887774 333 222 2222 3578888885 3332
Q ss_pred ----chhhcCCCCccEEEec
Q 043856 259 ----PDYLLRTTMLQELSIS 274 (275)
Q Consensus 259 ----p~~l~~L~~L~~L~l~ 274 (275)
+..+..+++|+.|+++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEE
T ss_pred HHHHHHHHhcCCCccEEEec
Confidence 3345677888888875
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-12 Score=105.40 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=86.6
Q ss_pred CCCeEEeccc--CCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 76 NVEKLWIIFY--GGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 76 ~L~~L~l~~~--~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
.|+...+.+. ....+|..+..+++|++|++++| .+..+|.+..++ |+.|+++++. +..+|..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~------------- 88 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNL-IKKIENL------------- 88 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEE-ECSCSSH-------------
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCCC-cccccch-------------
Confidence 3445555443 12225557888999999999985 556677777778 9999999775 6666643
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEEEEecCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQELSIYSCE 229 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~ 229 (275)
...+++|+.|+++++ .+..++. + ..+++|+.|++++| +++.+|. .+..+++|++|++++|+
T Consensus 89 -------~~~~~~L~~L~L~~N-~l~~l~~-~------~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 89 -------DAVADTLEELWISYN-QIASLSG-I------EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -------HHHHHHCSEEEEEEE-ECCCHHH-H------HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -------hhcCCcCCEEECcCC-cCCcCCc-c------ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 335678999999875 3444432 1 15788999999888 6777654 67788999999998875
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=109.00 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecC----CCCCcCC-CCCCcc-cceeeccccccccccCccccccccccC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFC----ENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c----~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
+.++.|.+.++.....|..+.....|..+.|... +.+...+ .+..++ |+.|+|+++. +..+|..
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~--------- 242 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISAN--------- 242 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSC-CSCCCGG---------
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChh---------
Confidence 3567777766655444544444444444444331 2222222 255667 8888888765 6666655
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..++..+ ..+++|+.|+|++| +++.+|..++.+++|++|++++|
T Consensus 243 -----------~~~l~~L~~L~Ls~N~-l~~lp~~~------~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 243 -----------IFKYDFLTRLYLNGNS-LTELPAEI------KNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp -----------GGGCCSCSCCBCTTSC-CSCCCGGG------GGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS
T ss_pred -----------hcCCCCCCEEEeeCCc-CcccChhh------hCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC
Confidence 3467888888888753 44555422 26888888888888 67788888888888888888877
Q ss_pred CCCccCCccccccCCCCCcccceecc
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.++.+|. .+..+++|++|+++
T Consensus 304 -~l~~lp~----~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 304 -MVTTLPW----EFGNLCNLQFLGVE 324 (727)
T ss_dssp -CCCCCCS----STTSCTTCCCEECT
T ss_pred -CCCccCh----hhhcCCCccEEeCC
Confidence 5677777 57788888888886
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-11 Score=108.53 Aligned_cols=205 Identities=22% Similarity=0.237 Sum_probs=95.6
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcc-ccccc-CCCC----CCcEEeeecCCCCC----cCC-CCCCcc-cceeecccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNI-LPKWL-TSLT----NLRDLKLVFCENCE----HLP-PLGKLP-LEKLELRDLKS 132 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l-~~l~----~L~~L~L~~c~~~~----~lp-~l~~L~-L~~L~l~~~~~ 132 (275)
..++..+..+++|++|+++++.... .+..+ ..++ +|++|++++|.... .++ .+..++ |++|+++++.
T Consensus 46 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 124 (461)
T 1z7x_W 46 KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL- 124 (461)
T ss_dssp HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-
T ss_pred HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-
Confidence 3456666666777777776665432 11111 2333 57777777653221 122 245566 6666666554
Q ss_pred ccccCcc-ccc-----cccccCCCCCCCCC--------CCCCCCCCcccEeecccccccccccc-ccccccccCCCCccc
Q 043856 133 VKRVGNE-FLG-----IEEISEDDPSSSSS--------SSSVTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLS 197 (275)
Q Consensus 133 l~~l~~~-~~~-----~~~~~~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~ 197 (275)
+...... +.. ...+..+.++.... ...+..+++|+.|+++++. +..... .+. ......+++|+
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~-~~l~~~~~~L~ 202 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLC-QGLKDSPCQLE 202 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHH-HHHHHSCCCCC
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHH-HHHhcCCCCce
Confidence 3221100 000 00011111110000 0112345677777777654 221110 000 00000245777
Q ss_pred EEeEccCcccCc-----CccccCCCCCccEEEEecCCCCccCCccc--cccCCCCCcccceecc---ccc-----cchhh
Q 043856 198 SLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELPIPE--DRRTTDIPRLSSLRIG---LKV-----LPDYL 262 (275)
Q Consensus 198 ~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~~~l~~L~~L~l~---l~~-----lp~~l 262 (275)
.|++++| .++. ++..+..+++|++|++++|. +....... ......+++|++|+++ ++. +|..+
T Consensus 203 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 203 ALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp EEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred EEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 7777777 4554 45555667777777777763 22210000 0012236677777774 333 56666
Q ss_pred cCCCCccEEEec
Q 043856 263 LRTTMLQELSIS 274 (275)
Q Consensus 263 ~~L~~L~~L~l~ 274 (275)
.++++|++|+++
T Consensus 281 ~~~~~L~~L~Ls 292 (461)
T 1z7x_W 281 RAKESLKELSLA 292 (461)
T ss_dssp HHCTTCCEEECT
T ss_pred hhCCCcceEECC
Confidence 666777777765
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-10 Score=88.66 Aligned_cols=130 Identities=17% Similarity=0.205 Sum_probs=94.0
Q ss_pred cCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeec
Q 043856 94 LTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEI 171 (275)
Q Consensus 94 l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 171 (275)
+..+++|++|++++| .+..+|.+..+. |++|+++++. ++.++ . +..+++|+.|++
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~-~--------------------l~~l~~L~~L~L 71 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKLD-G--------------------FPLLRRLKTLLV 71 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEEC-C--------------------CCCCSSCCEEEC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCccc-c--------------------cccCCCCCEEEC
Confidence 347889999999995 556677766654 9999999875 65552 2 557899999999
Q ss_pred cccccccccccccccccccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEEEEecCCCCccCCccccccCCCCCccc
Q 043856 172 KELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLS 249 (275)
Q Consensus 172 ~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~ 249 (275)
+++. +..++..+ +..+++|+.|++++| +++.+|. .+..+++|+.|++++|+ +..+|......+..+++|+
T Consensus 72 s~N~-l~~~~~~~-----~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 72 NNNR-ICRIGEGL-----DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp CSSC-CCEECSCH-----HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCS
T ss_pred CCCc-ccccCcch-----hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccc
Confidence 8764 44444211 126899999999998 6888886 78889999999999885 4455541111255688888
Q ss_pred ceecc
Q 043856 250 SLRIG 254 (275)
Q Consensus 250 ~L~l~ 254 (275)
+|+++
T Consensus 144 ~Ld~~ 148 (176)
T 1a9n_A 144 VLDFQ 148 (176)
T ss_dssp EETTE
T ss_pred eeCCC
Confidence 88885
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-11 Score=115.05 Aligned_cols=182 Identities=23% Similarity=0.253 Sum_probs=110.0
Q ss_pred CCCCCCCeEEecccCCcc-cccccC-CCCCCcEEeeecCCCCCc--CCCC-CCcc-cceeeccccccccccCcccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNI-LPKWLT-SLTNLRDLKLVFCENCEH--LPPL-GKLP-LEKLELRDLKSVKRVGNEFLGIEE 145 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~-lp~~l~-~l~~L~~L~L~~c~~~~~--lp~l-~~L~-L~~L~l~~~~~l~~l~~~~~~~~~ 145 (275)
..+++|++|+++++.... .+..+. .+++|++|++.+|..+.. ++.+ ..++ |++|++++|. +..........
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~-- 178 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSH-- 178 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGG--
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHH--
Confidence 456788899988876433 333443 678899999988754443 3333 2567 8899988875 44332221111
Q ss_pred ccCCCCCCCCCCCCCCCCCcccEeeccccc-ccc--ccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccE
Q 043856 146 ISEDDPSSSSSSSSVTAFPKLKSLEIKELD-LLE--EWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQE 222 (275)
Q Consensus 146 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~l~--~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 222 (275)
....+++|+.|++.++. .+. .+.. ....+++|+.|++.+|..+..+|..+..+++|++
T Consensus 179 -------------~~~~~~~L~~L~l~~~~~~~~~~~l~~------l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 179 -------------FPDTYTSLVSLNISCLASEVSFSALER------LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239 (594)
T ss_dssp -------------SCTTCCCCCEEECTTCCSCCCHHHHHH------HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE
T ss_pred -------------HhhcCCcCcEEEecccCCcCCHHHHHH------HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceE
Confidence 03367789999888775 111 1111 0114788999999888666667777777888888
Q ss_pred EEEecC-------------------CCCccC------Cccccc-cCCCCCcccceeccccc-----cchhhcCCCCccEE
Q 043856 223 LSIYSC-------------------ENLEEL------PIPEDR-RTTDIPRLSSLRIGLKV-----LPDYLLRTTMLQEL 271 (275)
Q Consensus 223 L~l~~c-------------------~~l~~l------~~~~~~-~~~~l~~L~~L~l~l~~-----lp~~l~~L~~L~~L 271 (275)
|.+..| +.++.+ ...... .+..+++|++|+++-.. ++..+.++++|++|
T Consensus 240 L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L 319 (594)
T 2p1m_B 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319 (594)
T ss_dssp EECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEE
T ss_pred cccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEE
Confidence 875443 323222 000000 11246889999986221 23345688999999
Q ss_pred EecC
Q 043856 272 SISE 275 (275)
Q Consensus 272 ~l~~ 275 (275)
++++
T Consensus 320 ~l~~ 323 (594)
T 2p1m_B 320 WVLD 323 (594)
T ss_dssp EEEG
T ss_pred eCcC
Confidence 8863
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.4e-11 Score=103.58 Aligned_cols=204 Identities=13% Similarity=0.102 Sum_probs=105.8
Q ss_pred HHHHhcCCCC-CCCeEEecccCCcc-cccccCCC-----CCCcEEeeecCCCCCcCCC-----CCCc-c-cceeeccccc
Q 043856 66 QLLEALQPPL-NVEKLWIIFYGGNI-LPKWLTSL-----TNLRDLKLVFCENCEHLPP-----LGKL-P-LEKLELRDLK 131 (275)
Q Consensus 66 ~l~~~l~~l~-~L~~L~l~~~~~~~-lp~~l~~l-----~~L~~L~L~~c~~~~~lp~-----l~~L-~-L~~L~l~~~~ 131 (275)
.+.+.+..++ +|++|++++|.... .+..+..+ ++|++|++++|......+. +..+ + |+.|++++|.
T Consensus 41 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 41 ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 3445555555 67777776665443 23333332 6677777766432211111 2233 4 6666666554
Q ss_pred cccccCccccc------cccccCCCCCCCCC--------CCCCCCCC-cccEeecccccccccccc-ccccccccCCC-C
Q 043856 132 SVKRVGNEFLG------IEEISEDDPSSSSS--------SSSVTAFP-KLKSLEIKELDLLEEWNY-RITRKENISIM-P 194 (275)
Q Consensus 132 ~l~~l~~~~~~------~~~~~~~~~~~~~~--------~~~l~~l~-~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l-~ 194 (275)
+...+..... ...+..+.++.... ...+..++ +|+.|+++++. +..... .+. .....+ +
T Consensus 121 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~--~~l~~~~~ 196 (362)
T 3goz_A 121 -FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELA--KFLASIPA 196 (362)
T ss_dssp -GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHH--HHHHTSCT
T ss_pred -CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHH--HHHHhCCC
Confidence 4433322110 00111111110000 00112343 77777777653 221111 000 011135 5
Q ss_pred cccEEeEccCcccCc-----CccccCC-CCCccEEEEecCCCCccCCcc-ccccCCCCCcccceecc-----------cc
Q 043856 195 RLSSLKVGSCNKLKA-----LPDYLLQ-TTALQELSIYSCENLEELPIP-EDRRTTDIPRLSSLRIG-----------LK 256 (275)
Q Consensus 195 ~L~~L~l~~c~~l~~-----lp~~l~~-l~~L~~L~l~~c~~l~~l~~~-~~~~~~~l~~L~~L~l~-----------l~ 256 (275)
+|+.|++++| .++. ++..+.. .++|++|++++|. +...+.. ....+..+++|++|+++ +.
T Consensus 197 ~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 197 SVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 9999999998 5766 5655655 3599999999884 4443321 01134568899999995 22
Q ss_pred ccchhhcCCCCccEEEecC
Q 043856 257 VLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 257 ~lp~~l~~L~~L~~L~l~~ 275 (275)
.++..+.++++|+.|++++
T Consensus 275 ~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHTTSTTCCEEEEECTTS
T ss_pred HHHHHhccCCceEEEecCC
Confidence 3444667888899998864
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.6e-09 Score=83.59 Aligned_cols=122 Identities=17% Similarity=0.246 Sum_probs=82.3
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC---CCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP---LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~---l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
+.++++++....+|..+.. +|++|++++| .+..++. ++.++ |++|+++++. ++.++..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------------- 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN-------------- 72 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT--------------
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHh--------------
Confidence 6777777776667765543 7888888884 4454443 56777 8888888764 5554221
Q ss_pred CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccEEEEecCC
Q 043856 154 SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~ 229 (275)
.+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++. .|..+..+++|++|++++++
T Consensus 73 -----~~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 73 -----AFEGASHIQELQLGENK-IKEISN-----KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -----TTTTCTTCCEEECCSCC-CCEECS-----SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -----HcCCcccCCEEECCCCc-CCccCH-----HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 14467888888887653 443332 12336788888888887 5665 46677888888888888875
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.2e-10 Score=106.36 Aligned_cols=134 Identities=14% Similarity=0.022 Sum_probs=76.7
Q ss_pred HHHhcCCCCCCCeEEeccc-----CCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcc
Q 043856 67 LLEALQPPLNVEKLWIIFY-----GGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~-----~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
++..+....+|+.+.|... .....|..+..+++|+.|+|++|. +..+| .+..++ |++|+|+++. +..+|..
T Consensus 188 ~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~ 265 (727)
T 4b8c_D 188 ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAE 265 (727)
T ss_dssp ----------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGG
T ss_pred chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChh
Confidence 4444444445555544332 222245566688888888888844 44565 366777 8888888764 6677655
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCC
Q 043856 140 FLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTA 219 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 219 (275)
+..+++|+.|+++++. +..++..+ ..+++|+.|++++| .++.+|..++.+++
T Consensus 266 --------------------~~~l~~L~~L~Ls~N~-l~~lp~~~------~~l~~L~~L~L~~N-~l~~lp~~~~~l~~ 317 (727)
T 4b8c_D 266 --------------------IKNLSNLRVLDLSHNR-LTSLPAEL------GSCFQLKYFYFFDN-MVTTLPWEFGNLCN 317 (727)
T ss_dssp --------------------GGGGTTCCEEECTTSC-CSSCCSSG------GGGTTCSEEECCSS-CCCCCCSSTTSCTT
T ss_pred --------------------hhCCCCCCEEeCcCCc-CCccChhh------cCCCCCCEEECCCC-CCCccChhhhcCCC
Confidence 4467888888888754 44555422 26788888888887 67888888888888
Q ss_pred ccEEEEecCCC
Q 043856 220 LQELSIYSCEN 230 (275)
Q Consensus 220 L~~L~l~~c~~ 230 (275)
|+.|+|++|+.
T Consensus 318 L~~L~L~~N~l 328 (727)
T 4b8c_D 318 LQFLGVEGNPL 328 (727)
T ss_dssp CCCEECTTSCC
T ss_pred ccEEeCCCCcc
Confidence 88888888753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.92 E-value=6e-09 Score=83.43 Aligned_cols=102 Identities=16% Similarity=0.269 Sum_probs=71.2
Q ss_pred CcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccC
Q 043856 164 PKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRT 242 (275)
Q Consensus 164 ~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 242 (275)
++|+.|++.++. +..++. .+.+..+++|+.|+++++ +++.+ |..+..+++|++|++++| .+..++.. .+
T Consensus 29 ~~l~~L~l~~n~-i~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~ 98 (192)
T 1w8a_A 29 LHTTELLLNDNE-LGRISS----DGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNK---MF 98 (192)
T ss_dssp TTCSEEECCSCC-CCSBCC----SCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSS---SS
T ss_pred CCCCEEECCCCc-CCccCC----ccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCHH---Hh
Confidence 478888887653 444332 111336888888888887 57665 667888888888888887 45555542 46
Q ss_pred CCCCcccceecc---cccc-chhhcCCCCccEEEecC
Q 043856 243 TDIPRLSSLRIG---LKVL-PDYLLRTTMLQELSISE 275 (275)
Q Consensus 243 ~~l~~L~~L~l~---l~~l-p~~l~~L~~L~~L~l~~ 275 (275)
..+++|++|+++ ++.+ |..+..+++|+.|++++
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 678888888886 5544 66788888888888864
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-10 Score=109.06 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=21.4
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
.+++|+.|.+.+| .+..+|..+..+++|++|.+.+
T Consensus 218 ~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 218 NCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECB
T ss_pred hCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccc
Confidence 4566777777666 4555555555566666666654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-11 Score=108.82 Aligned_cols=206 Identities=24% Similarity=0.192 Sum_probs=101.2
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcc-cccccC-----CCCCCcEEeeecCCCCCc----CC-CCCCcc-cceeecccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNI-LPKWLT-----SLTNLRDLKLVFCENCEH----LP-PLGKLP-LEKLELRDLKS 132 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~-----~l~~L~~L~L~~c~~~~~----lp-~l~~L~-L~~L~l~~~~~ 132 (275)
..++..+..+++|++|++++|.... -+..+. ..++|++|++++|..... ++ .+..++ |+.|+++++.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 238 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK- 238 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-
Confidence 3456666667777777777765432 112221 345677777776532210 11 133345 6666666553
Q ss_pred ccccC-----cccc-ccccccCCCCCCCCC--------CCCCCCCCcccEeecccccccccccc-ccccccccCCCCccc
Q 043856 133 VKRVG-----NEFL-GIEEISEDDPSSSSS--------SSSVTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLS 197 (275)
Q Consensus 133 l~~l~-----~~~~-~~~~~~~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~ 197 (275)
+.... ..+. ....+..+.++.... ...+..+++|+.|+++++. +..... .+. .......++|+
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~-~~l~~~~~~L~ 316 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLC-ETLLEPGCQLE 316 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHH-HHHTSTTCCCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHH-HHhccCCccce
Confidence 32211 0000 000000010000000 0112346677777776653 211100 000 00011246788
Q ss_pred EEeEccCcccCc-----CccccCCCCCccEEEEecCCCCccCCcc-ccccCC-CCCcccceecc---cc-----ccchhh
Q 043856 198 SLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELPIP-EDRRTT-DIPRLSSLRIG---LK-----VLPDYL 262 (275)
Q Consensus 198 ~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~-~l~~L~~L~l~---l~-----~lp~~l 262 (275)
.|++++| .++. +|..+..+++|++|++++|. +...... ....+. ..++|++|+++ ++ .+|..+
T Consensus 317 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 317 SLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp EEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred eeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 8888887 3543 45556667888888888773 3322110 000111 25688888885 44 677778
Q ss_pred cCCCCccEEEecC
Q 043856 263 LRTTMLQELSISE 275 (275)
Q Consensus 263 ~~L~~L~~L~l~~ 275 (275)
..+++|++|++++
T Consensus 395 ~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 395 LANHSLRELDLSN 407 (461)
T ss_dssp HHCCCCCEEECCS
T ss_pred HhCCCccEEECCC
Confidence 8888888888864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=81.30 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=67.0
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccCCCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSS 155 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 155 (275)
+.++++++....+|..+. ++|++|++++ +.+..+| .+..++ |+.|+++++. ++.++...
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~--------------- 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS--------------- 73 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT---------------
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhH---------------
Confidence 345555555444554432 4566666666 3344444 344555 6666666543 44443221
Q ss_pred CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCC
Q 043856 156 SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCE 229 (275)
Q Consensus 156 ~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 229 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|.. +..+++|+.|++.+++
T Consensus 74 ----f~~l~~L~~L~Ls~N~-l~~i~~-----~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 74 ----FSNMTQLLTLILSYNR-LRCIPP-----RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ----TTTCTTCCEEECCSSC-CCBCCT-----TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ----ccCCCCCCEEECCCCc-cCEeCH-----HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 3356666666666543 333321 12235677777777776 56666653 5667777777777654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=80.99 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCcccccc
Q 043856 163 FPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 163 l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
+++|+.|++.++. +..++. .+..+++|+.|+++++ +++.++. .+..+++|++|++++| .+..++.. .
T Consensus 30 ~~~l~~L~L~~n~-i~~ip~------~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~---~ 97 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTLVPK------ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPR---T 97 (193)
T ss_dssp CTTCCEEECCSSC-CCSCCG------GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTT---T
T ss_pred CCCCCEEECCCCc-CchhHH------HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHH---H
Confidence 4578888887643 444442 2236788888888887 6777653 5778888888888887 45555542 4
Q ss_pred CCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 242 TTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 242 ~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
+..+++|++|+++ ++.+|. .+..+++|+.|++++
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 6678888888886 777776 477888888888763
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-08 Score=78.38 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=81.8
Q ss_pred CCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 77 VEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 77 L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
.+.++++++....+|..+ .++|++|++++| .+..++. ++.++ |++|+++++. +..++...
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------------- 71 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV------------- 71 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT-------------
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhH-------------
Confidence 456777766666566443 367888888884 3445553 56677 8888888664 55555431
Q ss_pred CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcccc-CCCCCccEEEEecCC
Q 043856 154 SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYL-LQTTALQELSIYSCE 229 (275)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 229 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|... ..+++|++|++++|+
T Consensus 72 ------~~~l~~L~~L~l~~N~-l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 72 ------FDKLTKLTILYLHENK-LQSLPN-----GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ------TTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------ccCCCccCEEECCCCC-ccccCH-----HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 3467788888887653 433332 11236788888888887 677777653 678888888888875
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-08 Score=77.31 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=69.4
Q ss_pred CCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCCccCCcccccc
Q 043856 163 FPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 163 l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
+++|+.|++.++. +..++. ..+..+++|+.|+++++ +++.+|.. +..+++|++|++++| .+..++.. .
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~---~ 95 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPH-----GVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG---V 95 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---T
T ss_pred CCCCcEEEeCCCc-ccEeCH-----HHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHH---H
Confidence 4678888887653 443332 12236788888888887 67777654 467888888888876 45555542 3
Q ss_pred CCCCCcccceecc---ccccchh-hcCCCCccEEEecC
Q 043856 242 TTDIPRLSSLRIG---LKVLPDY-LLRTTMLQELSISE 275 (275)
Q Consensus 242 ~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~~L~l~~ 275 (275)
+..+++|++|+++ ++.+|.. +..+++|+.|++++
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 4567888888885 7777764 47788888888763
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-09 Score=102.41 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=18.3
Q ss_pred CCcccceecc-------ccc------cchhhcCCCCccEEEec
Q 043856 245 IPRLSSLRIG-------LKV------LPDYLLRTTMLQELSIS 274 (275)
Q Consensus 245 l~~L~~L~l~-------l~~------lp~~l~~L~~L~~L~l~ 274 (275)
+++|+.|+++ ++. ++..+..+++|+.|+++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 6677777773 222 33335567888888773
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-10 Score=93.96 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=96.1
Q ss_pred HHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCcccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
.+|..+..+++|++|++++|....+| .+..+++|++|++++| .+..+|. +..++ |+.|+++++. +..+| .
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~---- 110 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS-G---- 110 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H----
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcCC-c----
Confidence 45567788999999999999877788 8889999999999995 4557775 34457 9999999874 66665 2
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-cc----------
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PD---------- 212 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~---------- 212 (275)
+..+++|+.|++.++. +..++. ......+++|+.|++++|+ +... |.
T Consensus 111 ----------------~~~l~~L~~L~l~~N~-i~~~~~----~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 111 ----------------IEKLVNLRVLYMSNNK-ITNWGE----IDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIE 168 (198)
T ss_dssp ----------------HHHHHHSSEEEESEEE-CCCHHH----HHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHH
T ss_pred ----------------cccCCCCCEEECCCCc-CCchhH----HHHHhcCCCCCEEEecCCc-cccccccccchHHHHHH
Confidence 4468899999998754 433331 0122379999999999984 5443 32
Q ss_pred ccCCCCCccEEE
Q 043856 213 YLLQTTALQELS 224 (275)
Q Consensus 213 ~l~~l~~L~~L~ 224 (275)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 166789999886
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=82.13 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred CCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCcc-EEEEecCCCCccCCccccc
Q 043856 163 FPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQ-ELSIYSCENLEELPIPEDR 240 (275)
Q Consensus 163 l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~-~L~l~~c~~l~~l~~~~~~ 240 (275)
+++|+.+++.++. +..++ ...+..+++|+.+.+.++ ++.++. .+.++++|+ .+.+.+ .++.++..
T Consensus 225 ~~~L~~l~L~~n~-i~~I~-----~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~--- 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIP-----DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG--- 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEEC-----TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT---
T ss_pred cCCCeEEECCCCC-cceec-----HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh---
Confidence 4556666665421 33322 123345677777777663 666653 356677777 777765 55555542
Q ss_pred cCCCCCcccceecc---ccccch-hhcCCCCccEEEe
Q 043856 241 RTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSI 273 (275)
Q Consensus 241 ~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l 273 (275)
.+..+++|+.+.+. ++.++. .+.++++|+.++.
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 56678888888873 677764 6777888887763
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.4e-10 Score=102.58 Aligned_cols=175 Identities=22% Similarity=0.241 Sum_probs=106.7
Q ss_pred CCCCCCeEEecccCCcc---cccccCCCCCCcEEeeecCCCCC----cCCCC-CCcc-cceeeccccccccccCcccccc
Q 043856 73 PPLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFCENCE----HLPPL-GKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c~~~~----~lp~l-~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
.+++|++|++++|.... ++....++++|++|++++|.... .++.+ ..++ |+.|++++|. ..++......
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~ 205 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALER 205 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHH
Confidence 47899999999885332 44445589999999999975211 12222 3567 9999999775 2222110000
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccC-------------------
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSC------------------- 204 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c------------------- 204 (275)
. ...+++|+.|++.+|..+..++..+. .+++|+.|.+..|
T Consensus 206 l---------------~~~~~~L~~L~L~~~~~~~~l~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 206 L---------------VTRCPNLKSLKLNRAVPLEKLATLLQ------RAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp H---------------HHHCTTCCEEECCTTSCHHHHHHHHH------HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred H---------------HHhCCCCcEEecCCCCcHHHHHHHHh------cCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 0 23478899999988765554433111 4666777654333
Q ss_pred cccC-----------cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--c--cccchhhcCCCCcc
Q 043856 205 NKLK-----------ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--L--KVLPDYLLRTTMLQ 269 (275)
Q Consensus 205 ~~l~-----------~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l--~~lp~~l~~L~~L~ 269 (275)
++++ .+|..+..+++|++|++++|. +..... ...+..+++|++|+++ + ..++.....+++|+
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l--~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDL--VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHH--HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHH--HHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 2222 233333457899999999986 432111 0124568999999996 2 22333345689999
Q ss_pred EEEe
Q 043856 270 ELSI 273 (275)
Q Consensus 270 ~L~l 273 (275)
+|+|
T Consensus 342 ~L~L 345 (594)
T 2p1m_B 342 ELRV 345 (594)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9988
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=73.40 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=25.6
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeecccc
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDL 130 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~ 130 (275)
+.++++++....+|..+. ++|++|++++| .+..+++ ++.++ |++|+++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN 67 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC
Confidence 455665555555555443 56666666663 3333321 44455 555555544
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.59 E-value=2.9e-07 Score=72.05 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=20.9
Q ss_pred CCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCE 229 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 229 (275)
.+++|+.|+++++ +++.+|.. +..+++|++|++++++
T Consensus 76 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 76 KLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4555666666555 45555443 5556666666666553
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-07 Score=71.67 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=26.1
Q ss_pred CCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceec
Q 043856 192 IMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
.+++|+.|+++++ +++.+|.. +..+++|++|++++| .+..++.. .+..+++|++|++
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~---~~~~l~~L~~L~L 112 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRG---AFDNLKSLTHIYL 112 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCSEEEC
T ss_pred CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHH---HhccccCCCEEEe
Confidence 3455555555554 44444443 244555555555443 33333331 2334455555555
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.47 E-value=6.4e-07 Score=70.08 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=35.1
Q ss_pred CcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCc
Q 043856 194 PRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTML 268 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L 268 (275)
++|+.|+++++ +++.+ |..+..+++|++|++++| .+..++.. .+..+++|++|+++ ++.+|. .+..+++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAG---VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChh---hccCCCCCCEEECCCCccCEeCHHHhcCCCCC
Confidence 44555555554 34443 333444555555555544 33344331 22345555555553 444443 24455555
Q ss_pred cEEEec
Q 043856 269 QELSIS 274 (275)
Q Consensus 269 ~~L~l~ 274 (275)
+.|+++
T Consensus 105 ~~L~L~ 110 (170)
T 3g39_A 105 THIWLL 110 (170)
T ss_dssp CEEECC
T ss_pred CEEEeC
Confidence 555543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.1e-08 Score=84.90 Aligned_cols=162 Identities=16% Similarity=0.097 Sum_probs=89.4
Q ss_pred hHHHHHHhcCCCCCCCeEEecccCCc----------ccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccc
Q 043856 63 KDEQLLEALQPPLNVEKLWIIFYGGN----------ILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLK 131 (275)
Q Consensus 63 ~~~~l~~~l~~l~~L~~L~l~~~~~~----------~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~ 131 (275)
..+.+.+++..+++|+.|.|...... .++..+..+++|+.|.|++|... .++.+. ++ |+.|.|..|.
T Consensus 127 ~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 127 IADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGG 204 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSB
T ss_pred HHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCC
Confidence 34456666667789999988653211 13344557889999999886332 344443 66 8888887553
Q ss_pred cccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecccccc-------ccccccccccccccCCCCcccEEeEccC
Q 043856 132 SVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDL-------LEEWNYRITRKENISIMPRLSSLKVGSC 204 (275)
Q Consensus 132 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------l~~l~~~i~~~~~~~~l~~L~~L~l~~c 204 (275)
+..-...... ...+|+|+.|++....+ +..+...+ ....+|+|+.|.+.+|
T Consensus 205 -l~~~~l~~l~-----------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l----~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 205 -LPDSVVEDIL-----------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF----SKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -CCHHHHHHHH-----------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS----CTTTCTTCCEEEEESC
T ss_pred -CChHHHHHHH-----------------HccCCCCcEEEEeccccccccchhHHHHHHHH----hcCCCCCcCEEeCCCC
Confidence 2211100000 12588888888742111 11111100 1125788888888877
Q ss_pred cccCc-Cccc---cCCCCCccEEEEecCCCCcc-----CCccccccCCCCCcccceecc
Q 043856 205 NKLKA-LPDY---LLQTTALQELSIYSCENLEE-----LPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 205 ~~l~~-lp~~---l~~l~~L~~L~l~~c~~l~~-----l~~~~~~~~~~l~~L~~L~l~ 254 (275)
. +.. .+.. ...+++|++|+++.| .++. ++. .+..+++|+.|+++
T Consensus 263 ~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~----~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 263 E-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLD----HVDKIKHLKFINMK 315 (362)
T ss_dssp T-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHT----THHHHTTCSEEECC
T ss_pred C-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHh----hcccCCcceEEECC
Confidence 3 331 1111 134678888888665 3433 111 22346777887775
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.6e-08 Score=84.72 Aligned_cols=146 Identities=20% Similarity=0.156 Sum_probs=88.7
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCC-cCCCC--CCcc-cceeeccccccccccCccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCE-HLPPL--GKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~-~lp~l--~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
+...+.++++|+.|.++++....+|. + .+++|++|.|..|.... .+..+ ..+| |+.|+|+.+.+...-......
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 33445677899999999886555665 4 48999999999764211 11112 3678 999988632111000000000
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-----CccccCCC
Q 043856 143 IEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQT 217 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l 217 (275)
.... .....||+|+.|.+.+|.........+... ..+|+|+.|+++.| .+.. ++..+.++
T Consensus 242 l~~~-----------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a---~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 242 FRPL-----------FSKDRFPNLKWLGIVDAEEQNVVVEMFLES---DILPQLETMDISAG-VLTDEGARLLLDHVDKI 306 (362)
T ss_dssp TGGG-----------SCTTTCTTCCEEEEESCTTHHHHHHHHHHC---SSGGGCSEEECCSS-CCBHHHHHHHHTTHHHH
T ss_pred HHHH-----------HhcCCCCCcCEEeCCCCCCchHHHHHHHhC---ccCCCCCEEECCCC-CCChHHHHHHHhhcccC
Confidence 0000 002368999999998765432222111111 25899999999876 5654 45555678
Q ss_pred CCccEEEEecCC
Q 043856 218 TALQELSIYSCE 229 (275)
Q Consensus 218 ~~L~~L~l~~c~ 229 (275)
++|+.|++++|.
T Consensus 307 ~~L~~L~L~~n~ 318 (362)
T 2ra8_A 307 KHLKFINMKYNY 318 (362)
T ss_dssp TTCSEEECCSBB
T ss_pred CcceEEECCCCc
Confidence 999999998874
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=71.47 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=17.0
Q ss_pred CCCeEEecccCCccc-ccccCCCCCCcEEeeec
Q 043856 76 NVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVF 107 (275)
Q Consensus 76 ~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~ 107 (275)
+|+.+.+.. ....+ +..+..+++|+.+++..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 566666654 22222 23455667777777765
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-06 Score=74.28 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=61.2
Q ss_pred eEEeccc-CCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCCCCCCC
Q 043856 79 KLWIIFY-GGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSS 154 (275)
Q Consensus 79 ~L~l~~~-~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (275)
.++.++. ....+|. +..+++|++|+|++++.+..++. ++.++ |+.|+|+++. +..++...
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~-------------- 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDA-------------- 75 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTG--------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHH--------------
Confidence 4566665 4555888 88888888888886456666663 67777 8888888664 66655431
Q ss_pred CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccC
Q 043856 155 SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSC 204 (275)
Q Consensus 155 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c 204 (275)
+..+++|+.|+|+++ .+..++..+ +..+ .|+.|.+.++
T Consensus 76 -----~~~l~~L~~L~l~~N-~l~~~~~~~-----~~~~-~L~~l~l~~N 113 (347)
T 2ifg_A 76 -----FHFTPRLSRLNLSFN-ALESLSWKT-----VQGL-SLQELVLSGN 113 (347)
T ss_dssp -----GGSCSCCCEEECCSS-CCSCCCSTT-----TCSC-CCCEEECCSS
T ss_pred -----hcCCcCCCEEeCCCC-ccceeCHHH-----cccC-CceEEEeeCC
Confidence 335777777777764 344444211 1122 2777777766
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.9e-06 Score=70.94 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=60.0
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCccc-EEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCcc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLS-SLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIP 237 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~-~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~ 237 (275)
+..+++|+.|.+.+. +..+. ...+..+++|+ .+.+.+ +++.++ ..+.++++|+.|++.++ .+..++..
T Consensus 246 F~~~~~L~~l~l~~n--i~~I~-----~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~ 315 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN--LKTIG-----QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDE 315 (329)
T ss_dssp TTTCTTCCEEECCTT--CCEEC-----TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTT
T ss_pred hhCCCCCCEEECCcc--cceeh-----HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchh
Confidence 557889999999763 44443 23445789999 999987 577775 56788999999998764 66676653
Q ss_pred ccccCCCCCcccceec
Q 043856 238 EDRRTTDIPRLSSLRI 253 (275)
Q Consensus 238 ~~~~~~~l~~L~~L~l 253 (275)
.+..+++|+.++.
T Consensus 316 ---aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 ---LFGNGVPSKLIYK 328 (329)
T ss_dssp ---TTCTTCCCCEEEC
T ss_pred ---hhcCCcchhhhcc
Confidence 6777889988753
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-06 Score=72.72 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=44.9
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPE 238 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~ 238 (275)
+..+++|+.|++++...+..++. ..+..+++|+.|+|+++ +++.+|. .+.++++|+.|+|++| .+..+|..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~- 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-----RDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK- 98 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-----GGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCST-
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-----hHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH-
Confidence 44555666666665344444442 11225666666766666 5665443 4566666666666664 45555542
Q ss_pred cccCCCCCcccceecc
Q 043856 239 DRRTTDIPRLSSLRIG 254 (275)
Q Consensus 239 ~~~~~~l~~L~~L~l~ 254 (275)
.+..++ |+.|++.
T Consensus 99 --~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 99 --TVQGLS-LQELVLS 111 (347)
T ss_dssp --TTCSCC-CCEEECC
T ss_pred --HcccCC-ceEEEee
Confidence 112222 6666663
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.9e-06 Score=65.90 Aligned_cols=71 Identities=11% Similarity=0.227 Sum_probs=48.3
Q ss_pred CCCCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc--CccccCCCCCccEEEEecCCCCcc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
+..+++|+.|++++|..++..-. .+... ....++|+.|+|++|++++. +- .+.++++|++|+|++|+.++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~--~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQL--ENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTC--HHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhc--ccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 34788899999988887654321 11100 00135799999999988875 32 355689999999999987764
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00019 Score=63.91 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 76 NVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
+|+.+.+..+ ...++. .+.. .+|+.+.+.. .+..++ .+..++ |+.+.+.++ .++.++...+....+..+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 6777777544 222333 2333 5788888875 444444 256677 899988754 37777665443222222211
Q ss_pred CC---CCCCCCCCCCCcccEeecc
Q 043856 152 SS---SSSSSSVTAFPKLKSLEIK 172 (275)
Q Consensus 152 ~~---~~~~~~l~~l~~L~~L~l~ 172 (275)
.. .....+...+++|+.+.+.
T Consensus 211 p~~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 211 PVTLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CTTCCEECTTTTTTCTTCCCEECC
T ss_pred CCchheehhhHhhCCCCCCEEecC
Confidence 11 1112234456667777664
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.3e-06 Score=67.15 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=19.7
Q ss_pred CCCCCeEEecccCCcc--cccccCCCCCCcEEeeecCCCCC
Q 043856 74 PLNVEKLWIIFYGGNI--LPKWLTSLTNLRDLKLVFCENCE 112 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~c~~~~ 112 (275)
-.+|++|++++|.... + ..+..+++|++|+|++|..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCC
T ss_pred CceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccC
Confidence 3456666666655321 1 123456666666666665443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.5e-07 Score=81.79 Aligned_cols=160 Identities=16% Similarity=0.088 Sum_probs=95.6
Q ss_pred CCCCCeEEecccCCcc-----cccccC-CCCCCcEEeeecCCCCC-cCCCC-CCcc-cceeeccccccccccCccccccc
Q 043856 74 PLNVEKLWIIFYGGNI-----LPKWLT-SLTNLRDLKLVFCENCE-HLPPL-GKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~-----lp~~l~-~l~~L~~L~L~~c~~~~-~lp~l-~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
+++|++|++++|.... +...+. ..++|++|+|++|.... .+..+ ..++ |+.|++++|. +...+.......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 4579999999987643 222233 34799999999974311 11122 2356 9999999874 443322111000
Q ss_pred cccCCCCCCCCCCCCC-CCCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc-----CccccCCC
Q 043856 145 EISEDDPSSSSSSSSV-TAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQT 217 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l 217 (275)
+ ...++|+.|++++|. +..... .+. .....+++|+.|++++| .++. ++..+...
T Consensus 150 ---------------L~~~~~~L~~L~Ls~n~-l~~~~~~~l~--~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 150 ---------------LLHDQCQITTLRLSNNP-LTAAGVAVLM--EGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRN 210 (372)
T ss_dssp ---------------HHSTTCCCCEEECCSSC-CHHHHHHHHH--HHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGC
T ss_pred ---------------HHhcCCccceeeCCCCC-CChHHHHHHH--HHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcC
Confidence 1 246789999999875 322110 000 01125789999999998 4653 45566778
Q ss_pred CCccEEEEecCCCCccCCcc-ccccCCCCCcccceecc
Q 043856 218 TALQELSIYSCENLEELPIP-EDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~-~~~~~~~l~~L~~L~l~ 254 (275)
++|++|++++|. ++..... ....+...++|++|+++
T Consensus 211 ~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 211 RQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp SCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred CCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEecc
Confidence 899999999984 3321110 00123346889999996
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=4.6e-06 Score=73.57 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=89.3
Q ss_pred HHHHHhcCC-CCCCCeEEecccCCcc--cccccCCCCCCcEEeeecCCCCCcCC--CC-----CCcc-cceeeccccccc
Q 043856 65 EQLLEALQP-PLNVEKLWIIFYGGNI--LPKWLTSLTNLRDLKLVFCENCEHLP--PL-----GKLP-LEKLELRDLKSV 133 (275)
Q Consensus 65 ~~l~~~l~~-l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~c~~~~~lp--~l-----~~L~-L~~L~l~~~~~l 133 (275)
..+...+.. .++|++|++++|.... +..-...+++|++|+|++|. +.... .+ ...+ |+.|++++|. +
T Consensus 90 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l 167 (372)
T 3un9_A 90 TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-L 167 (372)
T ss_dssp HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-C
T ss_pred HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-C
Confidence 345555543 3699999999987543 22222256789999999963 32111 11 2345 9999999885 5
Q ss_pred cccCccccccccccCCCCCCCCCCCCCCCCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc---
Q 043856 134 KRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA--- 209 (275)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~--- 209 (275)
+..+...... .+...++|+.|+++++. +..... .+ .......++|+.|++++| .++.
T Consensus 168 ~~~~~~~l~~---------------~L~~~~~L~~L~Ls~N~-l~~~g~~~L--~~~L~~~~~L~~L~Ls~N-~i~~~g~ 228 (372)
T 3un9_A 168 TAAGVAVLME---------------GLAGNTSVTHLSLLHTG-LGDEGLELL--AAQLDRNRQLQELNVAYN-GAGDTAA 228 (372)
T ss_dssp HHHHHHHHHH---------------HHHTCSSCCEEECTTSS-CHHHHHHHH--HHHGGGCSCCCEEECCSS-CCCHHHH
T ss_pred ChHHHHHHHH---------------HHhcCCCcCEEeCCCCC-CCcHHHHHH--HHHHhcCCCcCeEECCCC-CCCHHHH
Confidence 4432211100 13468899999999875 322110 00 001125679999999998 5663
Q ss_pred --CccccCCCCCccEEEEecCC
Q 043856 210 --LPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 210 --lp~~l~~l~~L~~L~l~~c~ 229 (275)
++..+...++|++|++++|+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 44455567899999999985
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0022 Score=56.46 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=35.1
Q ss_pred CCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--ccccch-hhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--LKVLPD-YLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l~~lp~-~l~~L~~ 267 (275)
.+.+|+.+.+.. .++.++. .+.++++|+.+.|.. .++.+.. .++..+++|+.+.+. ++.++. ++.++++
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~---~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGK---RSFRGCTSLSNINFPLSLRKIGANAFQGCIN 367 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT---TTTTTCTTCCEECCCTTCCEECTTTBTTCTT
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhH---HhccCCCCCCEEEECccccEehHHHhhCCCC
Confidence 445555555543 2444332 234455566555532 2333332 134445555555553 444432 4455555
Q ss_pred ccEEEe
Q 043856 268 LQELSI 273 (275)
Q Consensus 268 L~~L~l 273 (275)
|+.+++
T Consensus 368 L~~i~l 373 (394)
T 4fs7_A 368 LKKVEL 373 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 555554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00034 Score=58.61 Aligned_cols=60 Identities=18% Similarity=0.053 Sum_probs=44.4
Q ss_pred CCCCCCCeEEecccCCcc---cccccCCCCCCcEEeeecCCCCCcCCCCCCcc---cceeecccccc
Q 043856 72 QPPLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP---LEKLELRDLKS 132 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~---L~~L~l~~~~~ 132 (275)
..+++|+.|++++|.... +|..+..+++|++|+|++ +.+..+..+..+. |++|.+++++-
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcC
Confidence 357789999999988765 345566899999999998 5555555555554 88888888763
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00028 Score=55.64 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=69.7
Q ss_pred CCCCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc-----CccccCCCCCccEEEEecCCCCcc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
+...++|+.|+++++..+..--. .+. ......++|+.|++++| .+.. +...+...++|++|++++|. +..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~--~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACA--EALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHH--HHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHH--HHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 44678999999988733432110 000 01225688999999998 4653 34445566889999999874 332
Q ss_pred CCc-cccccCCCCCcccceec--c---c-----cccchhhcCCCCccEEEecC
Q 043856 234 LPI-PEDRRTTDIPRLSSLRI--G---L-----KVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 234 l~~-~~~~~~~~l~~L~~L~l--~---l-----~~lp~~l~~L~~L~~L~l~~ 275 (275)
--. .....+...++|++|++ + + ..+...+...++|++|++++
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 100 00114556788999999 5 2 23455667778999999863
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=54.94 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=38.3
Q ss_pred CCCcccEEeEccCcccCcCc---cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c-cccc-----
Q 043856 192 IMPRLSSLKVGSCNKLKALP---DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L-KVLP----- 259 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp---~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l-~~lp----- 259 (275)
.+|+|+.|+++++ ++..++ ..+..+++|+.|++++| .+..+.. ...+..+ +|+.|.+. + ..+|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccC-CcceEEccCCcCccccCcchhH
Confidence 3666666666666 455433 33445666666666655 3333311 0112222 66666664 2 2233
Q ss_pred --hhhcCCCCccEEE
Q 043856 260 --DYLLRTTMLQELS 272 (275)
Q Consensus 260 --~~l~~L~~L~~L~ 272 (275)
..+..+++|+.|+
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 1345666666664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.001 Score=52.35 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCCCCeEEeccc-CCcc-----cccccCCCCCCcEEeeecCC
Q 043856 65 EQLLEALQPPLNVEKLWIIFY-GGNI-----LPKWLTSLTNLRDLKLVFCE 109 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~-~~~~-----lp~~l~~l~~L~~L~L~~c~ 109 (275)
+.+...+...++|++|++++| .... +...+...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 456677788899999999988 5432 34455577888888888853
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.063 Score=47.06 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=43.7
Q ss_pred CCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--ccccch-hhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--LKVLPD-YLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l~~lp~-~l~~L~~ 267 (275)
.+++|+.+.+.. .++.++. .+.++++|+.+.|.. .++.+.. .++..+.+|+.+.|. ++.++. ++.++++
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~---~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD---DAFAGCEQLERIAIPSSVTKIPESAFSNCTA 358 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT---TTTTTCTTCCEEEECTTCCBCCGGGGTTCTT
T ss_pred cccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH---hHhhCCCCCCEEEECcccCEEhHhHhhCCCC
Confidence 344555555432 2444432 344567777776643 3444443 255667777777774 666653 6677777
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.+++.
T Consensus 359 L~~i~~~ 365 (394)
T 4gt6_A 359 LNNIEYS 365 (394)
T ss_dssp CCEEEES
T ss_pred CCEEEEC
Confidence 8777764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.079 Score=46.39 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=66.5
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCccc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIPE 238 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~ 238 (275)
...+.+|+.+.+.. +++.+. ...+..+++|+.+.|.. .++.++ ..+.++++|+.+.+.. .++.+..
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~-----~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-- 359 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIG-----EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGA-- 359 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEEC-----TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT--
T ss_pred cccccccccccccc--ccceec-----hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehH--
Confidence 33566777777643 222222 22344688999998864 466664 4567789999998854 3666654
Q ss_pred cccCCCCCcccceecc--ccccchhhcCCCCccEE
Q 043856 239 DRRTTDIPRLSSLRIG--LKVLPDYLLRTTMLQEL 271 (275)
Q Consensus 239 ~~~~~~l~~L~~L~l~--l~~lp~~l~~L~~L~~L 271 (275)
.++..+++|+.+.+. ++.+...+.++++|+.+
T Consensus 360 -~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 -NAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp -TTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred -HHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 267789999999985 66776778888888865
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.72 Score=39.76 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceec
Q 043856 192 IMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
.+++|+.+.+.++ .++.++ ..+.++++|+.+.+.. .++.+.. .++..+++|+.+.+
T Consensus 284 ~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~---~aF~~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV---YAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT---TTTTTCTTCCCCCC
T ss_pred ccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH---HHhhCCCCCCEEEE
Confidence 5677777777554 455554 3455667777776642 3444443 24556667776666
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.87 Score=39.26 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--ccccch-hhcCCC
Q 043856 191 SIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--LKVLPD-YLLRTT 266 (275)
Q Consensus 191 ~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l~~lp~-~l~~L~ 266 (275)
..+.+|+.+.+.. +++.++. .+..+++|+.+.+.++ .++.++.. .+..+++|+.+.+. ++.++. ++.+++
T Consensus 260 ~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~---aF~~c~~L~~i~lp~~l~~I~~~aF~~C~ 333 (379)
T 4h09_A 260 QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPR---VFMDCVKLSSVTLPTALKTIQVYAFKNCK 333 (379)
T ss_dssp TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTT---TTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred ceeehhccccccc--cceecccccccccccccccccccc-ccceehhh---hhcCCCCCCEEEcCccccEEHHHHhhCCC
Confidence 3577888888854 4666654 4567899999998653 46666542 66788999999994 777764 678888
Q ss_pred CccEEEe
Q 043856 267 MLQELSI 273 (275)
Q Consensus 267 ~L~~L~l 273 (275)
+|+.+.|
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 8988776
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=90.80 E-value=1.3 Score=38.59 Aligned_cols=121 Identities=16% Similarity=0.239 Sum_probs=69.6
Q ss_pred cCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEee
Q 043856 94 LTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLE 170 (275)
Q Consensus 94 l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 170 (275)
+..+++|+.+.+... +..+. .+...+ |+.+.+.. .++.++... ...+.+|+.+.
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~a-------------------F~~c~~L~~i~ 317 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESV-------------------FAGCISLKSID 317 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTT-------------------TTTCTTCCEEE
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCCC--cccccCcee-------------------ecCCCCcCEEE
Confidence 446778888887652 22222 244556 77777753 366665431 34677888888
Q ss_pred ccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCccccccCCCCCccc
Q 043856 171 IKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLS 249 (275)
Q Consensus 171 l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~ 249 (275)
+.. +++.+. ...+..+.+|+.+.|.. .++.++ ..+.++++|+.+.+.+... .+ . .+....+|+
T Consensus 318 lp~--~v~~I~-----~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~~-~----~~~~~~~L~ 381 (394)
T 4gt6_A 318 IPE--GITQIL-----DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--QW-N----AISTDSGLQ 381 (394)
T ss_dssp CCT--TCCEEC-----TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--HH-H----TCBCCCCC-
T ss_pred eCC--cccEeh-----HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--eh-h----hhhccCCCC
Confidence 853 232222 22344688999999964 466775 3567889999999876421 11 1 233456666
Q ss_pred ceec
Q 043856 250 SLRI 253 (275)
Q Consensus 250 ~L~l 253 (275)
.+.+
T Consensus 382 ~i~i 385 (394)
T 4gt6_A 382 NLPV 385 (394)
T ss_dssp ----
T ss_pred EEEe
Confidence 6554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.29 Score=35.78 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=27.8
Q ss_pred CcccEEeEccCcccCcCccc-cCCCCCccEEEEecCC
Q 043856 194 PRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCE 229 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 229 (275)
++|+.|+|+++ +++.+|.. +..+++|+.|+|.+|+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47889999887 78888764 4668889999988875
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=82.77 E-value=1.1 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=18.3
Q ss_pred CCCeEEecccCCcccccc-cCCCCCCcEEeeecC
Q 043856 76 NVEKLWIIFYGGNILPKW-LTSLTNLRDLKLVFC 108 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~c 108 (275)
+|++|+|++|....+|.. +..+++|++|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 566666666655555433 335556666666653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 275 | |||
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.63 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.55 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.54 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.51 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.45 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.44 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.41 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.37 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.37 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.36 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.35 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.35 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.34 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.33 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.22 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.22 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.2 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.06 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.02 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.01 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.92 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.92 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.88 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.83 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.79 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.72 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.61 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.48 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.36 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.08 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.95 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.84 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.58 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.51 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.81 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.3 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.04 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 94.26 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 89.65 |
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=9.1e-16 Score=127.88 Aligned_cols=176 Identities=23% Similarity=0.237 Sum_probs=135.9
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
..+|+.+. +++++|+++++....+| ..+.++++|++|++++| .++.+|.++.++ |+.|+++++. +...+..
T Consensus 23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~-l~~~~~~--- 95 (266)
T d1p9ag_ 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLL--- 95 (266)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSC-CSSCCCC---
T ss_pred CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccccccccccccccccccc-ccccccc---
Confidence 34666663 58999999999887766 56889999999999995 677888888899 9999999875 6655543
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCcc
Q 043856 143 IEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQ 221 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~ 221 (275)
+..+++|+.|+++++... .+.. .....+++++.|.+.++ .++.+|.. +..+++|+
T Consensus 96 -----------------~~~l~~L~~L~l~~~~~~-~~~~-----~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~ 151 (266)
T d1p9ag_ 96 -----------------GQTLPALTVLDVSFNRLT-SLPL-----GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLE 151 (266)
T ss_dssp -----------------TTTCTTCCEEECCSSCCC-CCCS-----STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred -----------------cccccccccccccccccc-eeec-----ccccccccccccccccc-ccceeccccccccccch
Confidence 457889999999876532 2221 12236789999999988 67777654 45688999
Q ss_pred EEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 222 ELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 222 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.|++++| .+..++.. .+..+++|++|+++ ++.||+++..+++|+.|++++
T Consensus 152 ~l~l~~N-~l~~~~~~---~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~ 204 (266)
T d1p9ag_ 152 KLSLANN-NLTELPAG---LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (266)
T ss_dssp EEECTTS-CCSCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred hcccccc-cccccCcc---ccccccccceeecccCCCcccChhHCCCCCCCEEEecC
Confidence 9999887 56666652 46678999999996 889999888899999999874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=1.5e-14 Score=116.27 Aligned_cols=161 Identities=22% Similarity=0.277 Sum_probs=127.2
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.+|++|+++++....++ .+..+++|++|++++| .+..++.++.++ |+.|+++++. ++.++.
T Consensus 45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n~-i~~l~~-------------- 107 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSS-------------- 107 (210)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGG--------------
T ss_pred hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCc-cccCccccccCcccccccccccc-cccccc--------------
Confidence 458999999998876655 4779999999999995 677788888899 9999999874 666652
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCc
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..+++|+.|++.++.. ..+. ....+++|+.+.+.++ .+..++ .+..+++|+++++++| .+.
T Consensus 108 -------l~~l~~L~~L~l~~~~~-~~~~-------~l~~l~~l~~l~~~~n-~l~~~~-~~~~l~~L~~l~l~~n-~l~ 169 (210)
T d1h6ta2 108 -------LKDLKKLKSLSLEHNGI-SDIN-------GLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDN-QIS 169 (210)
T ss_dssp -------GTTCTTCCEEECTTSCC-CCCG-------GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCC
T ss_pred -------ccccccccccccccccc-cccc-------cccccccccccccccc-cccccc-cccccccccccccccc-ccc
Confidence 44789999999987653 2222 1226889999999887 677655 4677999999999987 455
Q ss_pred cCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 233 ELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.++. +..+++|+.|+++ ++.+| .+.++++|+.|+|++
T Consensus 170 ~i~~-----l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 170 DIVP-----LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CCGG-----GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred cccc-----ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence 5543 6679999999996 88887 689999999999974
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.55 E-value=2.8e-14 Score=113.60 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=123.7
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.++++|+++++....++ .+..+++|++|++++| .+..+++++.++ |++|+++++. +..++.
T Consensus 39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l~~n~-~~~~~~-------------- 101 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-------------- 101 (199)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG--------------
T ss_pred hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccc-cccCcccccCCcccccccccccc-cccccc--------------
Confidence 568999999998876654 5778999999999995 677787889999 9999999775 444431
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCc
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..+++|+.|++.++.... .. ....+++|+.|++++| ++..++ .+..+++|+.|++.+| .+.
T Consensus 102 -------l~~l~~L~~L~l~~~~~~~-~~-------~~~~l~~L~~L~l~~n-~l~~~~-~l~~~~~L~~L~l~~n-~l~ 163 (199)
T d2omxa2 102 -------LANLTNLTGLTLFNNQITD-ID-------PLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLNFSSN-QVT 163 (199)
T ss_dssp -------GTTCTTCSEEECCSSCCCC-CG-------GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECCSS-CCC
T ss_pred -------ccccccccccccccccccc-cc-------ccchhhhhHHhhhhhh-hhcccc-cccccccccccccccc-ccc
Confidence 4478999999998765432 22 1226899999999998 677776 4788999999999887 566
Q ss_pred cCCccccccCCCCCcccceecc---ccccchhhcCCCCccEE
Q 043856 233 ELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQEL 271 (275)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L 271 (275)
.++. +..+++|++|+++ ++.+| .+..+++|++|
T Consensus 164 ~l~~-----l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 164 DLKP-----LANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp CCGG-----GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred CCcc-----ccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence 6543 6789999999997 77776 58889999886
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.54 E-value=1e-14 Score=123.95 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=115.4
Q ss_pred HHHHhcCCCCCCCeEEeccc-CCc-ccccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFY-GGN-ILPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~-~~~-~lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|.+++.+++|++|+++++ ... .+|.+++++++|++|++++|......+. +..++ |+.++++.+.....+|..+.
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~ 146 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence 36889999999999999874 443 3899999999999999999654443333 45566 88888887765555555543
Q ss_pred ccccccCCCCCC----CCCCCCCCCCCcc-cEeecccccccccccccc-----------------ccccccCCCCcccEE
Q 043856 142 GIEEISEDDPSS----SSSSSSVTAFPKL-KSLEIKELDLLEEWNYRI-----------------TRKENISIMPRLSSL 199 (275)
Q Consensus 142 ~~~~~~~~~~~~----~~~~~~l~~l~~L-~~L~l~~~~~l~~l~~~i-----------------~~~~~~~~l~~L~~L 199 (275)
....+..+.+.. ......+..++++ +.+.+..+.-....+..+ ........+++|+.+
T Consensus 147 ~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l 226 (313)
T d1ogqa_ 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred cCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 222211111110 0111122233332 333333211000000000 001112246677777
Q ss_pred eEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc-ccchhhcCCCCccEEEec
Q 043856 200 KVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK-VLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 200 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~-~lp~~l~~L~~L~~L~l~ 274 (275)
.+.++ .+...+..++.+++|+.|++++|.....+|. .+..+++|++|+++ +. .+|. ++++++|+.++++
T Consensus 227 ~~~~~-~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~----~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~ 299 (313)
T d1ogqa_ 227 HLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299 (313)
T ss_dssp ECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCG----GGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTC
T ss_pred ccccc-cccccccccccccccccccCccCeecccCCh----HHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhC
Confidence 77776 4544444566677777777777654446666 56677777777775 43 6663 4566666666554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=6.8e-14 Score=113.50 Aligned_cols=181 Identities=19% Similarity=0.262 Sum_probs=109.5
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.+|++|.+.+|....++ .+.++++|++|++++| .+..++++..++ |+++.++++. ++.++. +.+...+..+.+.
T Consensus 40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~l~~l~~l~~l~~~~n~-~~~i~~-l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVSA-IAGLQSIKTLDLT 115 (227)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCGG-GTTCTTCCEEECT
T ss_pred cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCc-eeecccccccccccccccccccc-cccccc-ccccccccccccc
Confidence 346777777776655553 4667777777777763 445555566666 7777766553 333321 1110000000000
Q ss_pred C--CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCC
Q 043856 153 S--SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCEN 230 (275)
Q Consensus 153 ~--~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 230 (275)
. ......+...+.++.+.+..+... ... ....+++|+.|.+.+| .+...+. ++++++|++|++++| .
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-------~~~~~~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~Ls~n-~ 184 (227)
T d1h6ua2 116 STQITDVTPLAGLSNLQVLYLDLNQIT-NIS-------PLAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-K 184 (227)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCC-CCG-------GGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-C
T ss_pred cccccccchhccccchhhhhchhhhhc-hhh-------hhcccccccccccccc-ccccchh-hcccccceecccCCC-c
Confidence 0 000011223444555554433211 111 1225789999999888 5666653 788999999999988 5
Q ss_pred CccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 231 LEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 231 l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++.++. +..+++|++|+++ ++.+| .++++++|+.|+|++
T Consensus 185 l~~l~~-----l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 185 ISDISP-----LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCCCGG-----GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred cCCChh-----hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence 776654 6679999999997 88887 489999999999974
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.51 E-value=1.2e-13 Score=116.80 Aligned_cols=72 Identities=22% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
..+|..+ .+++++|++++|....+|. ++.++++|++|++++|......| .+..++ |+.|+++++. ++.+|..
T Consensus 23 ~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~ 97 (305)
T d1xkua_ 23 EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK 97 (305)
T ss_dssp CSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS
T ss_pred CccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccc
Confidence 3455555 3578888888887777765 57788888888888865443333 266777 8888888764 6666544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.45 E-value=3.4e-13 Score=107.22 Aligned_cols=143 Identities=20% Similarity=0.284 Sum_probs=111.1
Q ss_pred HhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccccccc
Q 043856 69 EALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147 (275)
Q Consensus 69 ~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (275)
+++..+++|++|++++|....++. ++++++|++|++++| ....++.+..++ |+.|+++++.. ..++ .
T Consensus 56 ~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~~~~-~~~~-~-------- 123 (199)
T d2omxa2 56 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQI-TDID-P-------- 123 (199)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-CCCG-G--------
T ss_pred cccccCCCcCcCccccccccCccc-ccCCccccccccccc-cccccccccccccccccccccccc-cccc-c--------
Confidence 456778999999999998766654 889999999999985 566777788899 99999997753 3222 1
Q ss_pred CCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
+..+++|+.|+++++. +..++ ....+++|+.|.+.+| +++.++. ++++++|++|++++
T Consensus 124 ------------~~~l~~L~~L~l~~n~-l~~~~-------~l~~~~~L~~L~l~~n-~l~~l~~-l~~l~~L~~L~ls~ 181 (199)
T d2omxa2 124 ------------LKNLTNLNRLELSSNT-ISDIS-------ALSGLTSLQQLNFSSN-QVTDLKP-LANLTTLERLDISS 181 (199)
T ss_dssp ------------GTTCTTCSEEECCSSC-CCCCG-------GGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred ------------cchhhhhHHhhhhhhh-hcccc-------cccccccccccccccc-cccCCcc-ccCCCCCCEEECCC
Confidence 4478999999998764 43333 1237899999999998 7888874 88899999999999
Q ss_pred CCCCccCCccccccCCCCCcccce
Q 043856 228 CENLEELPIPEDRRTTDIPRLSSL 251 (275)
Q Consensus 228 c~~l~~l~~~~~~~~~~l~~L~~L 251 (275)
| .++.++. +..+++|+.|
T Consensus 182 N-~i~~i~~-----l~~L~~L~~L 199 (199)
T d2omxa2 182 N-KVSDISV-----LAKLTNLESL 199 (199)
T ss_dssp S-CCCCCGG-----GGGCTTCSEE
T ss_pred C-CCCCCcc-----ccCCCCCCcC
Confidence 8 4666653 5567777764
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.44 E-value=2.8e-13 Score=108.62 Aligned_cols=145 Identities=22% Similarity=0.254 Sum_probs=113.5
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
++..+++|++|++++|....++ .++.+++|++|++++| .++.+|.+..++ |+.|+++++. +..++ .
T Consensus 63 ~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~~~-~~~~~-~--------- 129 (210)
T d1h6ta2 63 GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG-ISDIN-G--------- 129 (210)
T ss_dssp TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSC-CCCCG-G---------
T ss_pred hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccc-ccccccccccccccccccccccc-ccccc-c---------
Confidence 5677999999999999877666 4679999999999984 677888888899 9999999875 33332 1
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.+++..+. +..... ...+++|+.+.+.+| +++.++. +.++++|++|++++|
T Consensus 130 -----------l~~l~~l~~l~~~~n~-l~~~~~-------~~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~Ls~N 188 (210)
T d1h6ta2 130 -----------LVHLPQLESLYLGNNK-ITDITV-------LSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 188 (210)
T ss_dssp -----------GGGCTTCCEEECCSSC-CCCCGG-------GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred -----------cccccccccccccccc-cccccc-------ccccccccccccccc-ccccccc-ccCCCCCCEEECCCC
Confidence 4467889999987654 333221 126899999999998 6888864 788999999999988
Q ss_pred CCCccCCccccccCCCCCcccceecc
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.++.++ .+..+++|++|+++
T Consensus 189 -~i~~l~-----~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 189 -HISDLR-----ALAGLKNLDVLELF 208 (210)
T ss_dssp -CCCBCG-----GGTTCTTCSEEEEE
T ss_pred -CCCCCh-----hhcCCCCCCEEEcc
Confidence 566665 36779999999874
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=6.7e-13 Score=114.94 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=63.1
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCc
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTML 268 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L 268 (275)
.+++++.|+++++ +++.++. +..+++|++|++++| .++.++ .+..+++|++|+++ ++.+|. ++++++|
T Consensus 305 ~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~-----~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L 375 (384)
T d2omza2 305 NLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN-KVSDVS-----SLANLTNINWLSAGHNQISDLTP-LANLTRI 375 (384)
T ss_dssp GCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG-----GGGGCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred hhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC-CCCCCh-----hHcCCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 6889999999998 7888864 788999999999998 566654 36679999999997 777764 8999999
Q ss_pred cEEEecC
Q 043856 269 QELSISE 275 (275)
Q Consensus 269 ~~L~l~~ 275 (275)
+.|+|++
T Consensus 376 ~~L~L~~ 382 (384)
T d2omza2 376 TQLGLND 382 (384)
T ss_dssp SEEECCC
T ss_pred CEeeCCC
Confidence 9999975
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.41 E-value=1.2e-13 Score=117.25 Aligned_cols=176 Identities=15% Similarity=0.224 Sum_probs=124.4
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
.+|..++.+++|++|++++|.... .|..+..+.+|++++++.|.....+| .++.++ |+.++++++.....+|..+..
T Consensus 92 ~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~ 171 (313)
T d1ogqa_ 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccc
Confidence 589999999999999999998776 45557789999999999977666776 478888 999999887644456654432
Q ss_pred cccc-cCCCCC---------------------------CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCC
Q 043856 143 IEEI-SEDDPS---------------------------SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMP 194 (275)
Q Consensus 143 ~~~~-~~~~~~---------------------------~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~ 194 (275)
.... ..+... ..........+++|+.+++.++.-... +. ....++
T Consensus 172 l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~------~~~~~~ 244 (313)
T d1ogqa_ 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LG------KVGLSK 244 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GG------GCCCCT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc------cccccc
Confidence 2211 000000 111223345667788888776543222 22 123689
Q ss_pred cccEEeEccCcccC-cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 195 RLSSLKVGSCNKLK-ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 195 ~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
+|+.|++++| +++ .+|..++++++|++|++++|..-+.+|. ..++++|+.++++
T Consensus 245 ~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-----~~~L~~L~~l~l~ 299 (313)
T d1ogqa_ 245 NLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-----GGNLQRFDVSAYA 299 (313)
T ss_dssp TCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC-----STTGGGSCGGGTC
T ss_pred ccccccCccC-eecccCChHHhCCCCCCEEECcCCcccccCCC-----cccCCCCCHHHhC
Confidence 9999999998 676 7999999999999999999854346664 4568888888774
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=6e-12 Score=104.27 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=108.8
Q ss_pred HHH-HhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccc
Q 043856 66 QLL-EALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 66 ~l~-~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
.++ ..+..+++|++|++++|....+|. ++.+++|++|++++|. +..++ .+..++ |+.|+++++. +..++...
T Consensus 45 ~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~-- 119 (266)
T d1p9ag_ 45 TFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGA-- 119 (266)
T ss_dssp EEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSST--
T ss_pred CcCHHHhhcccccccccccccccccccc-cccccccccccccccc-ccccccccccccccccccccccc-cceeeccc--
Confidence 344 568899999999999998776764 5789999999999964 44444 467788 9999999775 44444321
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCcc
Q 043856 143 IEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQ 221 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~ 221 (275)
...+++++.|.+.++. +..++. .....+++|+.|.+++| +++.+|. .+..+++|+
T Consensus 120 -----------------~~~l~~l~~L~l~~n~-l~~l~~-----~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~ 175 (266)
T d1p9ag_ 120 -----------------LRGLGELQELYLKGNE-LKTLPP-----GLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLD 175 (266)
T ss_dssp -----------------TTTCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCC
T ss_pred -----------------cccccccccccccccc-cceecc-----ccccccccchhcccccc-cccccCccccccccccc
Confidence 3356777888777642 333332 12225777888888777 6777654 356778888
Q ss_pred EEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 222 ELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 222 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
+|++++| .++.+|. .+..+++|+.|+++
T Consensus 176 ~L~Ls~N-~L~~lp~----~~~~~~~L~~L~L~ 203 (266)
T d1p9ag_ 176 TLLLQEN-SLYTIPK----GFFGSHLLPFAFLH 203 (266)
T ss_dssp EEECCSS-CCCCCCT----TTTTTCCCSEEECC
T ss_pred eeecccC-CCcccCh----hHCCCCCCCEEEec
Confidence 8888776 4667776 56667778888774
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.37 E-value=2.6e-12 Score=103.90 Aligned_cols=162 Identities=18% Similarity=0.271 Sum_probs=103.1
Q ss_pred cCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC--CCCCCCCCCCCCcccEee
Q 043856 94 LTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS--SSSSSSSVTAFPKLKSLE 170 (275)
Q Consensus 94 l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~ 170 (275)
+..+.+|++|++.+| .++.++.+..++ |+.|+++++. +..++. +.....+..+... .......+..+++|+.+.
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~ 113 (227)
T d1h6ua2 37 QADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (227)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HHHcCCcCEEECCCC-CCCcchhHhcCCCCcEeecCCce-eecccc-ccccccccccccccccccccccccccccccccc
Confidence 346889999999996 567788889999 9999999875 544431 2211111111111 111122345566666666
Q ss_pred ccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccc
Q 043856 171 IKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSS 250 (275)
Q Consensus 171 l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~ 250 (275)
+.++.... .. .....+.++.+.+..+ .+...+ .+..+++|++|.+.+|. +...+ .+..+++|+.
T Consensus 114 l~~~~~~~-~~-------~~~~~~~~~~l~~~~~-~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~-----~l~~l~~L~~ 177 (227)
T d1h6ua2 114 LTSTQITD-VT-------PLAGLSNLQVLYLDLN-QITNIS-PLAGLTNLQYLSIGNAQ-VSDLT-----PLANLSKLTT 177 (227)
T ss_dssp CTTSCCCC-CG-------GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSC-CCCCG-----GGTTCTTCCE
T ss_pred cccccccc-cc-------hhccccchhhhhchhh-hhchhh-hhccccccccccccccc-cccch-----hhccccccee
Confidence 66543221 11 1124667777777666 444433 35668899999988774 33332 3667999999
Q ss_pred eecc---ccccchhhcCCCCccEEEecC
Q 043856 251 LRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 251 L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|+++ ++.+| .++++++|++|++++
T Consensus 178 L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~ 204 (227)
T d1h6ua2 178 LKADDNKISDIS-PLASLPNLIEVHLKN 204 (227)
T ss_dssp EECCSSCCCCCG-GGGGCTTCCEEECTT
T ss_pred cccCCCccCCCh-hhcCCCCCCEEECcC
Confidence 9996 77776 488999999999974
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.36 E-value=7e-12 Score=105.63 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=49.3
Q ss_pred hHHHHHH-hcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeecccc
Q 043856 63 KDEQLLE-ALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDL 130 (275)
Q Consensus 63 ~~~~l~~-~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~ 130 (275)
.+..+++ ++..+++|++|+++++....+ |..+.++++|++|++++| .++.+|.. ..+ ++.|.+..+
T Consensus 42 ~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~-~~~~l~~L~~~~n 110 (305)
T d1xkua_ 42 KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEK-MPKTLQELRVHEN 110 (305)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS-CCTTCCEEECCSS
T ss_pred cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccc-hhhhhhhhhcccc
Confidence 3445665 588899999999999988875 667889999999999995 56666642 233 666666543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.4e-11 Score=102.87 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=118.7
Q ss_pred HHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc-c
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE-F 140 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~-~ 140 (275)
.+|..+ ++++++|+|+++....+|. ++..+++|++|+++++ .+..++. ...++ ++.+.+.....++.++.. |
T Consensus 25 ~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 101 (284)
T d1ozna_ 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (284)
T ss_dssp SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred ccCCCC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccchhh
Confidence 455544 2567888888887766664 5778888888888874 3443332 33344 666655555555555332 1
Q ss_pred cccccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccC
Q 043856 141 LGIEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLL 215 (275)
Q Consensus 141 ~~~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~ 215 (275)
.+...+..+.++. .........+++|+.+++.+. .++.++. ..+..+++|+.|+++++ +++.+| ..+.
T Consensus 102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~-----~~f~~~~~L~~L~l~~N-~l~~l~~~~f~ 174 (284)
T d1ozna_ 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPD-----DTFRDLGNLTHLFLHGN-RISSVPERAFR 174 (284)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred cccccCCEEecCCcccccccccccchhcccchhhhccc-cccccCh-----hHhccccchhhcccccC-cccccchhhhc
Confidence 1111111111110 111122345566777777653 2333331 12335788889999888 677764 4556
Q ss_pred CCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccc-hhhcCCCCccEEEecC
Q 043856 216 QTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLP-DYLLRTTMLQELSISE 275 (275)
Q Consensus 216 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp-~~l~~L~~L~~L~l~~ 275 (275)
.+++|+++++.+|......|. .+..+++|++|+++ +..+| ..++.+++|++|++++
T Consensus 175 ~l~~L~~l~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 175 GLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (284)
T ss_dssp TCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred cccccchhhhhhccccccChh----HhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence 788999998888754433344 67788999999996 66665 5788899999998864
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.1e-13 Score=116.22 Aligned_cols=163 Identities=19% Similarity=0.182 Sum_probs=103.8
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCc--CCC-CCCcc-cceeeccccccccccCccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEH--LPP-LGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~--lp~-l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
.+...+..+++|++|.+++|.... .+..++++++|++|++++|..++. +.. ...+| |++|++++|..+.......
T Consensus 62 ~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~ 141 (284)
T d2astb2 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141 (284)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchh
Confidence 345556778899999998886443 566777889999999998876652 222 23467 8999998886554221110
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcccEeecccccc-ccc--cccccccccccCCCCcccEEeEccCcccCc-CccccCC
Q 043856 141 LGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDL-LEE--WNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQ 216 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~ 216 (275)
.. ....++|+.|++.+|.. +.. +.. ....+|+|+.|++++|+.++. .+..+.+
T Consensus 142 ~~-----------------~~~~~~L~~L~l~~~~~~i~~~~l~~------l~~~~~~L~~L~L~~~~~itd~~~~~l~~ 198 (284)
T d2astb2 142 AV-----------------AHVSETITQLNLSGYRKNLQKSDLST------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198 (284)
T ss_dssp HH-----------------HHSCTTCCEEECCSCGGGSCHHHHHH------HHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred hh-----------------cccccccchhhhcccccccccccccc------cccccccccccccccccCCCchhhhhhcc
Confidence 00 11356788888877532 221 111 011478888888888877763 3455667
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
+++|++|++++|+.+..... ..+.++|+|+.|+++
T Consensus 199 ~~~L~~L~L~~C~~i~~~~l---~~L~~~~~L~~L~l~ 233 (284)
T d2astb2 199 LNYLQHLSLSRCYDIIPETL---LELGEIPTLKTLQVF 233 (284)
T ss_dssp CTTCCEEECTTCTTCCGGGG---GGGGGCTTCCEEECT
T ss_pred cCcCCEEECCCCCCCChHHH---HHHhcCCCCCEEeee
Confidence 88888888888876543211 245567888888774
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=9.1e-12 Score=104.03 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=124.4
Q ss_pred EEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcccccc-ccccCCCCC---
Q 043856 80 LWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGI-EEISEDDPS--- 152 (275)
Q Consensus 80 L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~-~~~~~~~~~--- 152 (275)
+..++.....+|..+. +++++|+|++ +.++.+|. +..++ |++|+++++. +..++...... .....+...
T Consensus 16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 16 TSCPQQGLQAVPVGIP--AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EECCSSCCSSCCTTCC--TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEcCCCCCCccCCCCC--CCCCEEECcC-CcCCCCCHHHhhcccccccccccccc-cccccccccccccccccccccccc
Confidence 3444444455787653 6789999999 56777774 78889 9999999764 66665443221 111110000
Q ss_pred --CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCC
Q 043856 153 --SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCE 229 (275)
Q Consensus 153 --~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 229 (275)
.......+..+++|+.|++..+.. ..+.. .....+++|+.+.+.++ .++.+|. .+..+++|+.|++++|
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~-----~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N- 163 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGL-QELGP-----GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN- 163 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCC-CCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred ccccccchhhcccccCCEEecCCccc-ccccc-----cccchhcccchhhhccc-cccccChhHhccccchhhcccccC-
Confidence 122234567789999999987653 22221 12236789999999987 7888864 4678899999999988
Q ss_pred CCccCCccccccCCCCCcccceecc---cccc-chhhcCCCCccEEEecC
Q 043856 230 NLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRTTMLQELSISE 275 (275)
Q Consensus 230 ~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L~~L~~L~l~~ 275 (275)
.+..++.. .+..+++|+++.++ +..+ |..++.+++|++|++++
T Consensus 164 ~l~~l~~~---~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 210 (284)
T d1ozna_ 164 RISSVPER---AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (284)
T ss_dssp CCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccccchh---hhccccccchhhhhhccccccChhHhhhhhhcccccccc
Confidence 56666652 56789999999996 5544 78899999999999874
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=9.2e-14 Score=116.69 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=124.0
Q ss_pred CCCCCCCeEEecccCCcc--cccccCCCCCCcEEeeecCCCCC-cCCCCCCcc-cceeeccccccccccCcccccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNI--LPKWLTSLTNLRDLKLVFCENCE-HLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~c~~~~-~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (275)
....+|++|++++|.... ++.-+.++++|++|.+++|.... .+..++.++ |++|++++|..++.......
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l------ 116 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL------ 116 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH------
T ss_pred ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchh------
Confidence 345689999999886543 45556799999999999985322 223466788 99999999876653221111
Q ss_pred CCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcc-cCc--CccccCCCCCccEEE
Q 043856 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNK-LKA--LPDYLLQTTALQELS 224 (275)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~-l~~--lp~~l~~l~~L~~L~ 224 (275)
...+++|++|++++|..+..-..... .....++|+.|.+.+|.. +.. +.....++++|++|+
T Consensus 117 ------------~~~~~~L~~L~ls~c~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~ 181 (284)
T d2astb2 117 ------------LSSCSRLDELNLSWCFDFTEKHVQVA---VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181 (284)
T ss_dssp ------------HHHCTTCCEEECCCCTTCCHHHHHHH---HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred ------------hHHHHhccccccccccccccccchhh---hcccccccchhhhcccccccccccccccccccccccccc
Confidence 23689999999999887643211000 011368999999998742 332 444445689999999
Q ss_pred EecCCCCccCCccccccCCCCCcccceecc-ccccc----hhhcCCCCccEEEecC
Q 043856 225 IYSCENLEELPIPEDRRTTDIPRLSSLRIG-LKVLP----DYLLRTTMLQELSISE 275 (275)
Q Consensus 225 l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~-l~~lp----~~l~~L~~L~~L~l~~ 275 (275)
+++|+.++.-.. ..+..+++|++|+++ ...+. ..++++++|+.|++++
T Consensus 182 L~~~~~itd~~~---~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~ 234 (284)
T d2astb2 182 LSDSVMLKNDCF---QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234 (284)
T ss_dssp CTTCTTCCGGGG---GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred cccccCCCchhh---hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence 999987753222 256779999999997 34333 3567889999999864
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.8e-11 Score=99.52 Aligned_cols=178 Identities=18% Similarity=0.237 Sum_probs=96.0
Q ss_pred HHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|+.+. +++++|+++++....+|. .+.++++|++|++++|.....++. +..++ ++++.+..++.+..++...
T Consensus 22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~- 98 (242)
T d1xwdc1 22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA- 98 (242)
T ss_dssp SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS-
T ss_pred CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc-
Confidence 3555442 477888888777666665 356778888888887655444443 44556 6777666555555554331
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccc------------------------cccccccccccccccCCC-Ccc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELD------------------------LLEEWNYRITRKENISIM-PRL 196 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------------------~l~~l~~~i~~~~~~~~l-~~L 196 (275)
+..+++|+.|.+.++. .+..+.. ..+..+ ..+
T Consensus 99 ------------------~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~-----~~~~~~~~~l 155 (242)
T d1xwdc1 99 ------------------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-----NSFVGLSFES 155 (242)
T ss_dssp ------------------EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT-----TSSTTSBSSC
T ss_pred ------------------ccccccccccccchhhhcccccccccccccccccccccccccccccc-----cccccccccc
Confidence 1233344444333211 1111110 011112 255
Q ss_pred cEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEE
Q 043856 197 SSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELS 272 (275)
Q Consensus 197 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~ 272 (275)
+.|.+.++ +++.++....+.++++++...++..++.+|.. .+..+++|++|+++ ++.+|. ++.++++|+.++
T Consensus 156 ~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~---~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~ 231 (242)
T d1xwdc1 156 VILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELPND---VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 231 (242)
T ss_dssp EEEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCCTT---TTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred eeeecccc-cccccccccccchhhhccccccccccccccHH---HhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence 56666554 56666655555666666655555566666552 34567777777774 666654 345555555544
Q ss_pred e
Q 043856 273 I 273 (275)
Q Consensus 273 l 273 (275)
+
T Consensus 232 ~ 232 (242)
T d1xwdc1 232 T 232 (242)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=5.9e-12 Score=96.65 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=84.4
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
+..+.++|+|++++|....+|.....+++|++|++++ +.+..++.+..++ |+.|++++|. +..++..+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~-N~i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~--------- 82 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSD-NEIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGL--------- 82 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCS-SCCCEECCCCCCSSCCEEECCSSC-CCEECSCH---------
T ss_pred ccCcCcCcEEECCCCCCCccCccccccccCCEEECCC-CCCCccCCcccCcchhhhhccccc-ccCCCccc---------
Confidence 4466789999999988877876666788999999998 4667777777888 8888888775 66665431
Q ss_pred CCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc----ccCCCCCccEEE
Q 043856 150 DPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD----YLLQTTALQELS 224 (275)
Q Consensus 150 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~ 224 (275)
...+++|+.|++.++. +..+.. ......+|+|+.|++.+|+ +..+|. .+..+|+|++|+
T Consensus 83 ----------~~~l~~L~~L~L~~N~-i~~~~~----l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 83 ----------DQALPDLTELILTNNS-LVELGD----LDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp ----------HHHCTTCCEEECCSCC-CCCGGG----GGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred ----------cccccccccceecccc-cccccc----ccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence 1246777777777643 332221 0112256777777777773 555543 245566666664
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.20 E-value=6.7e-11 Score=102.03 Aligned_cols=166 Identities=19% Similarity=0.261 Sum_probs=124.8
Q ss_pred HhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccccccc
Q 043856 69 EALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147 (275)
Q Consensus 69 ~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (275)
.....+++++.+.++++....++. ....++|++|++++| .+..++.+..++ |+.|+++++. +..++.
T Consensus 191 ~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~--------- 258 (384)
T d2omza2 191 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQ-ISNLAP--------- 258 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGG---------
T ss_pred cccccccccceeeccCCccCCCCc-ccccCCCCEEECCCC-CCCCcchhhcccccchhccccCc-cCCCCc---------
Confidence 445667888999998887665543 456788999999984 566677777788 9999998775 544432
Q ss_pred CCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
+..+++|+.|+++++. +..++. ...++.++.+.+..+ .+..++ .+..+++++.|++++
T Consensus 259 ------------~~~~~~L~~L~l~~~~-l~~~~~-------~~~~~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L~ls~ 316 (384)
T d2omza2 259 ------------LSGLTKLTELKLGANQ-ISNISP-------LAGLTALTNLELNEN-QLEDIS-PISNLKNLTYLTLYF 316 (384)
T ss_dssp ------------GTTCTTCSEEECCSSC-CCCCGG-------GTTCTTCSEEECCSS-CCSCCG-GGGGCTTCSEEECCS
T ss_pred ------------ccccccCCEeeccCcc-cCCCCc-------ccccccccccccccc-cccccc-ccchhcccCeEECCC
Confidence 4478899999997653 322221 226888999999887 677765 467799999999998
Q ss_pred CCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 228 CENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 228 c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
| .+..++. +..+++|++|+++ ++.+| .++++++|++|++++
T Consensus 317 n-~l~~l~~-----l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~ 360 (384)
T d2omza2 317 N-NISDISP-----VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH 360 (384)
T ss_dssp S-CCSCCGG-----GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCS
T ss_pred C-CCCCCcc-----cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCC
Confidence 7 5665543 5679999999997 77787 689999999999974
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=1.3e-10 Score=84.83 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=52.1
Q ss_pred EEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecccccccccc
Q 043856 102 DLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEW 180 (275)
Q Consensus 102 ~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 180 (275)
.|++++ +.++.++.++.++ |++|+++++. ++.+|.. +..+++|+.|+++++ .+..+
T Consensus 2 ~L~Ls~-n~l~~l~~l~~l~~L~~L~ls~N~-l~~lp~~--------------------~~~l~~L~~L~l~~N-~i~~l 58 (124)
T d1dcea3 2 VLHLAH-KDLTVLCHLEQLLLVTHLDLSHNR-LRALPPA--------------------LAALRCLEVLQASDN-ALENV 58 (124)
T ss_dssp EEECTT-SCCSSCCCGGGGTTCCEEECCSSC-CCCCCGG--------------------GGGCTTCCEEECCSS-CCCCC
T ss_pred EEEcCC-CCCCCCcccccCCCCCEEECCCCc-cCcchhh--------------------hhhhhcccccccccc-ccccc
Confidence 445555 3344444455555 5555555432 4555433 234556666666553 23333
Q ss_pred ccccccccccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEEEEecCC
Q 043856 181 NYRITRKENISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQELSIYSCE 229 (275)
Q Consensus 181 ~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~ 229 (275)
+. +..+++|+.|+++++ +++.+|. .+..+++|+.|++++++
T Consensus 59 ~~-------~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 59 DG-------VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp GG-------GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred Cc-------cccccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCc
Confidence 31 125677777777766 5665542 45666777777777653
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=9.1e-11 Score=89.84 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=85.9
Q ss_pred CCCCCCcEEeeecCCCCCcCCCC-CCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecc
Q 043856 95 TSLTNLRDLKLVFCENCEHLPPL-GKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIK 172 (275)
Q Consensus 95 ~~l~~L~~L~L~~c~~~~~lp~l-~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 172 (275)
.+..+|+.|++++ +.+..++.+ ..++ |+.|+++++. ++.++. +..+++|+.|+++
T Consensus 15 ~n~~~lr~L~L~~-n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~---------------------~~~l~~L~~L~ls 71 (162)
T d1a9na_ 15 TNAVRDRELDLRG-YKIPVIENLGATLDQFDAIDFSDNE-IRKLDG---------------------FPLLRRLKTLLVN 71 (162)
T ss_dssp ECTTSCEEEECTT-SCCCSCCCGGGGTTCCSEEECCSSC-CCEECC---------------------CCCCSSCCEEECC
T ss_pred cCcCcCcEEECCC-CCCCccCccccccccCCEEECCCCC-CCccCC---------------------cccCcchhhhhcc
Confidence 3677899999999 567777765 4567 9999999774 666642 4468889999988
Q ss_pred ccccccccccccccccccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccc
Q 043856 173 ELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSS 250 (275)
Q Consensus 173 ~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~ 250 (275)
++. +..++.. ....+++|+.|++++| +++.++. .+..+++|++|++.+|+ +...+.-....+..+|+|++
T Consensus 72 ~N~-i~~l~~~-----~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~ 143 (162)
T d1a9na_ 72 NNR-ICRIGEG-----LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRV 143 (162)
T ss_dssp SSC-CCEECSC-----HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSE
T ss_pred ccc-ccCCCcc-----ccccccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCe
Confidence 764 4444421 1125888999999888 6776653 56678889999988875 33333211112445677777
Q ss_pred eec
Q 043856 251 LRI 253 (275)
Q Consensus 251 L~l 253 (275)
|+-
T Consensus 144 LD~ 146 (162)
T d1a9na_ 144 LDF 146 (162)
T ss_dssp ETT
T ss_pred eCC
Confidence 664
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.01 E-value=5e-09 Score=88.64 Aligned_cols=67 Identities=28% Similarity=0.422 Sum_probs=48.4
Q ss_pred CCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCcc
Q 043856 193 MPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQ 269 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~ 269 (275)
+++|++|++++| +++.+|.. +++|++|++++| .++.+|. .+++|++|+++ ++.+|.. ..+|+
T Consensus 283 ~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~L~~l~~-------~~~~L~~L~L~~N~L~~lp~~---~~~L~ 347 (353)
T d1jl5a_ 283 PPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEVPE-------LPQNLKQLHVEYNPLREFPDI---PESVE 347 (353)
T ss_dssp CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSSCCSSCCCC---CTTCC
T ss_pred CCCCCEEECCCC-ccCccccc---cCCCCEEECCCC-cCCcccc-------ccCCCCEEECcCCcCCCCCcc---ccccC
Confidence 578888888888 68888754 578888888776 5667765 25678888886 7777753 34567
Q ss_pred EEEec
Q 043856 270 ELSIS 274 (275)
Q Consensus 270 ~L~l~ 274 (275)
.|.+.
T Consensus 348 ~L~~~ 352 (353)
T d1jl5a_ 348 DLRMN 352 (353)
T ss_dssp EEECC
T ss_pred eeECc
Confidence 77664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.92 E-value=6e-12 Score=99.86 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCCCeEEecccC--CcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 75 LNVEKLWIIFYG--GNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 75 ~~L~~L~l~~~~--~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
..++.+.+.+.. ...+|..+..+++|++|++++ +.++.++.+..++ |+.|++++|. ++.++..
T Consensus 23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~-n~I~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~------------ 88 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKISSLSGMENLRILSLGRNL-IKKIENL------------ 88 (198)
T ss_dssp TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSE-EEESCCCCHHHHTTCCEEECCEEE-ECSCSSH------------
T ss_pred cccceeeeecccCchhhhhhHHhcccccceeECcc-cCCCCcccccCCccccChhhcccc-ccccccc------------
Confidence 345666665532 222666777888888888887 4566677777777 8888888764 6655432
Q ss_pred CCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCCCCccEEEEecCC
Q 043856 152 SSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQTTALQELSIYSCE 229 (275)
Q Consensus 152 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~ 229 (275)
...+++|+.|++.++ .+..+.. ...+++|+.|++++| +++.++ ..+..+++|+.|++++|+
T Consensus 89 --------~~~~~~L~~L~l~~N-~i~~l~~-------~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 89 --------DAVADTLEELWISYN-QIASLSG-------IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp --------HHHHHHCCEEECSEE-ECCCHHH-------HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred --------ccccccccccccccc-ccccccc-------ccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence 123457888888765 3444331 115778888888887 677665 356778888888888875
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=5.2e-09 Score=84.51 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=114.8
Q ss_pred HHHH-hcCCCCCCCeEEecccCCcc-c-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc
Q 043856 66 QLLE-ALQPPLNVEKLWIIFYGGNI-L-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 66 ~l~~-~l~~l~~L~~L~l~~~~~~~-l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
.++. .+..+++|++|+++++.... + +.++..+++++++.+..++.+..++. +..++ |+.++++++. +...+..
T Consensus 43 ~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~ 121 (242)
T d1xwdc1 43 VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDV 121 (242)
T ss_dssp EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCC
T ss_pred ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh-hcccccc
Confidence 3444 57889999999999987665 3 34567899999999988777665553 56788 9999998764 5544321
Q ss_pred c-cc-cccccCCCCC----CCCCCCCCCCC-CcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc
Q 043856 140 F-LG-IEEISEDDPS----SSSSSSSVTAF-PKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD 212 (275)
Q Consensus 140 ~-~~-~~~~~~~~~~----~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 212 (275)
. .. ...+...... .......+..+ ..++.|.+.+. .+..+... ....++++.+....+.+++.+|.
T Consensus 122 ~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~------~~~~~~l~~~~~l~~n~l~~l~~ 194 (242)
T d1xwdc1 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNC------AFNGTQLDELNLSDNNNLEELPN 194 (242)
T ss_dssp TTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT------TTTTCCEEEEECTTCTTCCCCCT
T ss_pred cccccccccccccccccccccccccccccccccceeeecccc-cccccccc------cccchhhhccccccccccccccH
Confidence 1 10 0000000000 00011122223 35666777642 34443321 11456777776656668999986
Q ss_pred c-cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc-ccccc
Q 043856 213 Y-LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG-LKVLP 259 (275)
Q Consensus 213 ~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~-l~~lp 259 (275)
. +.++++|++|+++++ .++.+|.. .+..+++|+++++. ++.+|
T Consensus 195 ~~f~~l~~L~~L~Ls~N-~l~~l~~~---~~~~l~~L~~l~~~~l~~lp 239 (242)
T d1xwdc1 195 DVFHGASGPVILDISRT-RIHSLPSY---GLENLKKLRARSTYNLKKLP 239 (242)
T ss_dssp TTTTTSCCCSEEECTTS-CCCCCCSS---SCTTCCEEESSSEESSSCSC
T ss_pred HHhcCCCCCCEEECCCC-cCCccCHH---HHcCCcccccCcCCCCCcCC
Confidence 5 678999999999987 47777763 56778888888775 77776
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.88 E-value=6.7e-09 Score=81.23 Aligned_cols=123 Identities=17% Similarity=0.171 Sum_probs=65.9
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSS 154 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (275)
+.++.++.....+|..+. +++++|+|++|.....++ .+..++ |+.|+++++. +..++...
T Consensus 11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~-------------- 73 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA-------------- 73 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTT--------------
T ss_pred CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-cccccccc--------------
Confidence 344444444444565442 466666666632222232 234555 6666666554 33333221
Q ss_pred CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCC
Q 043856 155 SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCE 229 (275)
Q Consensus 155 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 229 (275)
+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ +++.+|. .+..+++|++|++.+++
T Consensus 74 -----~~~~~~L~~L~Ls~N-~l~~l~~-----~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 74 -----FEGASHIQELQLGEN-KIKEISN-----KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -----TTTCTTCCEEECCSC-CCCEECS-----SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -----cccccccceeeeccc-cccccCH-----HHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccc
Confidence 335666677776654 3444432 12335677777777776 5666644 35567777777776654
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=4.7e-09 Score=76.34 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=68.5
Q ss_pred CCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccc
Q 043856 159 SVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPE 238 (275)
Q Consensus 159 ~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~ 238 (275)
.+..+++|++|+++++ .+..++..+ ..+++|+.|+++++ .++.+| ++..+++|+.|++++| .+..++.-
T Consensus 15 ~l~~l~~L~~L~ls~N-~l~~lp~~~------~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~- 83 (124)
T d1dcea3 15 HLEQLLLVTHLDLSHN-RLRALPPAL------AALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAI- 83 (124)
T ss_dssp CGGGGTTCCEEECCSS-CCCCCCGGG------GGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTT-
T ss_pred ccccCCCCCEEECCCC-ccCcchhhh------hhhhcccccccccc-cccccC-ccccccccCeEECCCC-ccCCCCCc-
Confidence 4667888888888864 455655322 26888999999887 788887 4788899999998886 45555431
Q ss_pred cccCCCCCcccceecc---ccccc---h-hhcCCCCccEE
Q 043856 239 DRRTTDIPRLSSLRIG---LKVLP---D-YLLRTTMLQEL 271 (275)
Q Consensus 239 ~~~~~~l~~L~~L~l~---l~~lp---~-~l~~L~~L~~L 271 (275)
..+..+++|+.|+++ +..++ . .+..+++|+.|
T Consensus 84 -~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 84 -QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp -GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred -hhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 135678888888885 43332 2 23446777665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.79 E-value=1.7e-08 Score=78.91 Aligned_cols=102 Identities=15% Similarity=0.234 Sum_probs=62.8
Q ss_pred CcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccC
Q 043856 164 PKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRT 242 (275)
Q Consensus 164 ~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 242 (275)
++++.|++++.. +..... ...+..+++|+.|+++++ ++..+ +..+..+++|++|+++++ .+..++.. .+
T Consensus 29 ~~l~~L~Ls~N~-i~~~~~----~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~---~F 98 (192)
T d1w8aa_ 29 LHTTELLLNDNE-LGRISS----DGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNK---MF 98 (192)
T ss_dssp TTCSEEECCSCC-CCSBCC----SCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSS---SS
T ss_pred CCCCEEEeCCCC-Cccccc----ccccCCCceEeeeecccc-ccccccccccccccccceeeeccc-cccccCHH---HH
Confidence 567777777643 221110 112225777777777776 45443 445566777777777776 55566552 45
Q ss_pred CCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 243 TDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 243 ~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
..+++|++|+++ ++.+|. .+..+++|++|++++
T Consensus 99 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred hCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence 667777777775 666654 467777777777753
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.72 E-value=5.8e-11 Score=94.03 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=91.3
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCC-cc-cceeeccccccccccCccccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGK-LP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~-L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
++..+..+++|++|+++++....++ .+..+++|++|++++| .++.+|.+.. ++ |+.|+++++. ++.++.
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~------ 110 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLSG------ 110 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEE-CCCHHH------
T ss_pred hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccc-cccccccccccccccccccccccc-cccccc------
Confidence 4556777899999999999877675 5789999999999995 5677776544 45 9999999774 666532
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-----------
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY----------- 213 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----------- 213 (275)
+..+++|+.|+++++. +..+.. + ..+..+++|+.|++++|+ +...+..
T Consensus 111 ---------------~~~l~~L~~L~L~~N~-i~~~~~-~---~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~v 169 (198)
T d1m9la_ 111 ---------------IEKLVNLRVLYMSNNK-ITNWGE-I---DKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEV 169 (198)
T ss_dssp ---------------HHHHHHSSEEEESEEE-CCCHHH-H---HHHTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHH
T ss_pred ---------------ccccccccccccccch-hccccc-c---ccccCCCccceeecCCCc-cccCcccccchhhHHHHH
Confidence 3368899999998753 333321 0 122379999999999985 4332211
Q ss_pred cCCCCCccEEE
Q 043856 214 LLQTTALQELS 224 (275)
Q Consensus 214 l~~l~~L~~L~ 224 (275)
+..+|+|+.|+
T Consensus 170 i~~lp~L~~LD 180 (198)
T d1m9la_ 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCCEES
T ss_pred HHHCCCcCEeC
Confidence 34577787775
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.1e-07 Score=71.76 Aligned_cols=61 Identities=26% Similarity=0.256 Sum_probs=36.1
Q ss_pred CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCC
Q 043856 162 AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 229 (275)
.+++|+.|+++++ ++..+.. ..+..+++|+.|+++++ +++.+|..+....+|+.|+|++++
T Consensus 54 ~l~~L~~L~Ls~N-~l~~i~~-----~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 54 GLGELRNLTIVKS-GLRFVAP-----DAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp SCCCCSEEECCSS-CCCEECT-----TGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred cccccCcceeecc-ccCCccc-----ccccccccccceeccCC-CCcccChhhhccccccccccCCCc
Confidence 4555555555543 2333321 12225677777777776 677777666555677777777764
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.48 E-value=2e-06 Score=72.12 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeecccc
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDL 130 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~ 130 (275)
++++|+++++....+|++ .++|++|++++ +.++.+|.. +. |+.|++.++
T Consensus 39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~-N~l~~lp~~--~~~L~~L~l~~n 88 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPEL---PPHLESLVASC-NSLTELPEL--PQSLKSLLVDNN 88 (353)
T ss_dssp TCSEEECTTSCCSCCCSC---CTTCSEEECCS-SCCSSCCCC--CTTCCEEECCSS
T ss_pred CCCEEEeCCCCCCCCCCC---CCCCCEEECCC-CCCcccccc--hhhhhhhhhhhc
Confidence 555666665555445543 34556666654 344455431 23 555555543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=9.4e-07 Score=66.39 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=58.2
Q ss_pred CCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCcc
Q 043856 159 SVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIP 237 (275)
Q Consensus 159 ~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~ 237 (275)
.+..+++|+.|++.+...++.++. ..+..+++|+.|+++++ +++.++ ..+..+++|++|+++++ .++.++.
T Consensus 26 ~l~~l~~l~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~- 97 (156)
T d2ifga3 26 HLPGAENLTELYIENQQHLQHLEL-----RDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW- 97 (156)
T ss_dssp TSCSCSCCSEEECCSCSSCCEECG-----GGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCS-
T ss_pred cccCccccCeeecCCCccccccCc-----hhhccccccCcceeecc-ccCCcccccccccccccceeccCC-CCcccCh-
Confidence 345567888888876666666553 12336788888888887 687774 44677888888888876 5667776
Q ss_pred ccccCCCCCcccceecc
Q 043856 238 EDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 238 ~~~~~~~l~~L~~L~l~ 254 (275)
......+|+.|+++
T Consensus 98 ---~~~~~~~l~~L~L~ 111 (156)
T d2ifga3 98 ---KTVQGLSLQELVLS 111 (156)
T ss_dssp ---TTTCSCCCCEEECC
T ss_pred ---hhhccccccccccC
Confidence 33344567788775
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.08 E-value=1.5e-07 Score=79.80 Aligned_cols=199 Identities=19% Similarity=0.160 Sum_probs=100.4
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcc-----------cccccCCCCCCcEEeeecCCCCCc-CCC----CCCcc-cce
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNI-----------LPKWLTSLTNLRDLKLVFCENCEH-LPP----LGKLP-LEK 124 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~-----------lp~~l~~l~~L~~L~L~~c~~~~~-lp~----l~~L~-L~~ 124 (275)
...+.+-+.+...++|+.|.++++.... +...+...++|++|++++|..-.. +.. +...+ |+.
T Consensus 46 ~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 125 (344)
T d2ca6a1 46 EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125 (344)
T ss_dssp HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchh
Confidence 3445566677777777777777553221 112233567777777777532111 111 22334 777
Q ss_pred eeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecccccc----ccccccccccccccCCCCcccEEe
Q 043856 125 LELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDL----LEEWNYRITRKENISIMPRLSSLK 200 (275)
Q Consensus 125 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----l~~l~~~i~~~~~~~~l~~L~~L~ 200 (275)
|++++|. +........... +... .........+.|+.+.+.+..- ...+.. ....+++|+.|+
T Consensus 126 L~l~~n~-l~~~~~~~l~~~-l~~~-----~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~------~l~~~~~L~~L~ 192 (344)
T d2ca6a1 126 LYLHNNG-LGPQAGAKIARA-LQEL-----AVNKKAKNAPPLRSIICGRNRLENGSMKEWAK------TFQSHRLLHTVK 192 (344)
T ss_dssp EECCSSC-CHHHHHHHHHHH-HHHH-----HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH------HHHHCTTCCEEE
T ss_pred eeccccc-cccccccccccc-cccc-----ccccccccCcccceeecccccccccccccccc------hhhhhhhhcccc
Confidence 7777653 221110000000 0000 0000012456777777765321 111111 111467899999
Q ss_pred EccCcccCc------CccccCCCCCccEEEEecCCCCccCC-ccccccCCCCCcccceecc---c-----cccchhhcC-
Q 043856 201 VGSCNKLKA------LPDYLLQTTALQELSIYSCENLEELP-IPEDRRTTDIPRLSSLRIG---L-----KVLPDYLLR- 264 (275)
Q Consensus 201 l~~c~~l~~------lp~~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~~l~~L~~L~l~---l-----~~lp~~l~~- 264 (275)
+.+| .+.. +...+..+++|+.|++++|+ +.... ..-...+..+++|++|+++ + ..+-..+..
T Consensus 193 L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~ 270 (344)
T d2ca6a1 193 MVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 270 (344)
T ss_dssp CCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred cccc-cccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence 9887 4542 23345678889999998874 22110 0000135568889999986 2 223334443
Q ss_pred -CCCccEEEecC
Q 043856 265 -TTMLQELSISE 275 (275)
Q Consensus 265 -L~~L~~L~l~~ 275 (275)
.++|++|+|++
T Consensus 271 ~~~~L~~L~ls~ 282 (344)
T d2ca6a1 271 ENIGLQTLRLQY 282 (344)
T ss_dssp SSCCCCEEECCS
T ss_pred cCCCCCEEECCC
Confidence 35788998874
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.95 E-value=3.5e-07 Score=77.52 Aligned_cols=193 Identities=16% Similarity=0.116 Sum_probs=107.4
Q ss_pred hHHHHHHhcCCCCCCCeEEecccCCcc-----cccccCCCCCCcEEeeecCCCCCc--------CCC------CCCcc-c
Q 043856 63 KDEQLLEALQPPLNVEKLWIIFYGGNI-----LPKWLTSLTNLRDLKLVFCENCEH--------LPP------LGKLP-L 122 (275)
Q Consensus 63 ~~~~l~~~l~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~c~~~~~--------lp~------l~~L~-L 122 (275)
....+.+.+..+++|+.|++++|.... +...+...++|++|++++|..-.. +.. ....+ |
T Consensus 81 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L 160 (344)
T d2ca6a1 81 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 160 (344)
T ss_dssp HHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCccc
Confidence 445678888899999999999886432 334445789999999998742110 000 11234 6
Q ss_pred ceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccc-cccccccccccCCCCcccEEeE
Q 043856 123 EKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEE-WNYRITRKENISIMPRLSSLKV 201 (275)
Q Consensus 123 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~-l~~~i~~~~~~~~l~~L~~L~l 201 (275)
+.+.++++. +..-...... ..+..+++|+.|++..+.--.. ....+ ......+++|+.|++
T Consensus 161 ~~l~l~~n~-i~~~~~~~l~---------------~~l~~~~~L~~L~L~~n~i~~~g~~~~l--~~~l~~~~~L~~L~L 222 (344)
T d2ca6a1 161 RSIICGRNR-LENGSMKEWA---------------KTFQSHRLLHTVKMVQNGIRPEGIEHLL--LEGLAYCQELKVLDL 222 (344)
T ss_dssp CEEECCSSC-CTGGGHHHHH---------------HHHHHCTTCCEEECCSSCCCHHHHHHHH--HTTGGGCTTCCEEEC
T ss_pred ceeeccccc-cccccccccc---------------chhhhhhhhcccccccccccccccccch--hhhhcchhhhccccc
Confidence 777776542 2211111000 0133567788888876542111 00000 011225788888888
Q ss_pred ccCcccCc-----CccccCCCCCccEEEEecCCCCccCCcc-ccccC--CCCCcccceecc--------ccccchhhc-C
Q 043856 202 GSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELPIP-EDRRT--TDIPRLSSLRIG--------LKVLPDYLL-R 264 (275)
Q Consensus 202 ~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~--~~l~~L~~L~l~--------l~~lp~~l~-~ 264 (275)
++|+ ++. +...+..+++|++|++++|. +...... ....+ ...++|++|+++ +..+...+. +
T Consensus 223 s~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~ 300 (344)
T d2ca6a1 223 QDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300 (344)
T ss_dssp CSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred cccc-ccccccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHcc
Confidence 8773 432 34456677888888888874 2211000 00011 124678888886 223444553 5
Q ss_pred CCCccEEEecC
Q 043856 265 TTMLQELSISE 275 (275)
Q Consensus 265 L~~L~~L~l~~ 275 (275)
+++|+.|+|++
T Consensus 301 ~~~L~~L~l~~ 311 (344)
T d2ca6a1 301 MPDLLFLELNG 311 (344)
T ss_dssp CTTCCEEECTT
T ss_pred CCCCCEEECCC
Confidence 77888888763
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=3.2e-05 Score=57.96 Aligned_cols=59 Identities=20% Similarity=0.057 Sum_probs=44.9
Q ss_pred CCCCCCCeEEecccCCcccc---cccCCCCCCcEEeeecCCCCCcCCCCCCc--c-cceeeccccc
Q 043856 72 QPPLNVEKLWIIFYGGNILP---KWLTSLTNLRDLKLVFCENCEHLPPLGKL--P-LEKLELRDLK 131 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~lp---~~l~~l~~L~~L~L~~c~~~~~lp~l~~L--~-L~~L~l~~~~ 131 (275)
..+++|++|++++|....++ ..+..+++|+.|++++ +.++.++.+..+ . |+.|++.+++
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCC
Confidence 45789999999999877643 3455899999999999 667766654333 2 8888888775
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00015 Score=62.23 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=58.1
Q ss_pred CCCeEEecccCCcc--cccccCCCCCCcEEeeecCCCCC-----cCC-CCCCcc-cceeeccccccccccCccccccccc
Q 043856 76 NVEKLWIIFYGGNI--LPKWLTSLTNLRDLKLVFCENCE-----HLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEI 146 (275)
Q Consensus 76 ~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~c~~~~-----~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~ 146 (275)
+|+.|+++++.... +...+..++++++|+|.+|. ++ .++ .+...+ |++|+++++. ++..+......
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~--- 77 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQ--- 77 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHH---
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHH---
Confidence 67888887766543 33444577888888888874 22 111 134556 7777777653 43211110000
Q ss_pred cCCCCCCCCCCCCCC-CCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccC
Q 043856 147 SEDDPSSSSSSSSVT-AFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSC 204 (275)
Q Consensus 147 ~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c 204 (275)
.+. ..++|+.|++++|. +..... .+ ......+++|+.|.+++|
T Consensus 78 ------------~l~~~~~~L~~L~L~~n~-it~~~~~~l--~~~l~~~~~L~~L~L~~N 122 (460)
T d1z7xw1 78 ------------GLQTPSCKIQKLSLQNCC-LTGAGCGVL--SSTLRTLPTLQELHLSDN 122 (460)
T ss_dssp ------------TTCSTTCCCCEEECTTSC-CBGGGHHHH--HHHTTSCTTCCEEECCSS
T ss_pred ------------HHhcCCCCCCEEECCCCC-ccccccccc--cchhhccccccccccccc
Confidence 011 23468888887764 322110 00 011225778888888777
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.00033 Score=59.94 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=18.3
Q ss_pred CCCcccEEeEccCcccCc-----CccccCCCCCccEEEEecC
Q 043856 192 IMPRLSSLKVGSCNKLKA-----LPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c 228 (275)
.+++++.|++.+| .++. ++..+..+++|++|++++|
T Consensus 25 ~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N 65 (460)
T d1z7xw1 25 LLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN 65 (460)
T ss_dssp HHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred hCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence 3555556666655 3431 2333445555666665554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.00086 Score=49.77 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=50.2
Q ss_pred CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCcccc-
Q 043856 162 AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPED- 239 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~- 239 (275)
.+++|+.|+++++. +..+..- ......+++|+.|+++++ +++.++. .......|+.|++.+++-.........
T Consensus 63 ~~~~L~~L~Ls~N~-i~~l~~~---~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 63 NIPELLSLNLSNNR-LYRLDDM---SSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HCTTCCCCCCCSSC-CCCCSGG---GTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred hCCCCCEeeCCCcc-ccCCchh---HHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence 57888999888753 3332210 001125889999999887 6887764 122345788888888864333221100
Q ss_pred --ccCCCCCccccee
Q 043856 240 --RRTTDIPRLSSLR 252 (275)
Q Consensus 240 --~~~~~l~~L~~L~ 252 (275)
..+..+|+|++|+
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 0134567777665
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.30 E-value=0.0016 Score=48.49 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCc-----CccccCCCCCccEEEEecCCCCccC
Q 043856 162 AFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEEL 234 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l 234 (275)
..++|+.|+++++..+.. +.. + .......++|+.|++++| .+.. +...+...++|++|++++|. +..-
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~-l--~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~ 87 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRS-L--IEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPE 87 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHH-H--HHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHH-H--HHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh-cchH
Confidence 467899999987554431 111 0 001225678999999887 4542 22344456889999998874 3221
Q ss_pred -CccccccCCCCCcccceecc---ccc--------cchhhcCCCCccEEEec
Q 043856 235 -PIPEDRRTTDIPRLSSLRIG---LKV--------LPDYLLRTTMLQELSIS 274 (275)
Q Consensus 235 -~~~~~~~~~~l~~L~~L~l~---l~~--------lp~~l~~L~~L~~L~l~ 274 (275)
.......+..-++|++|+++ ... +...+..-++|+.|+++
T Consensus 88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~ 139 (167)
T d1pgva_ 88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 139 (167)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCc
Confidence 00011145566788888884 222 34455556788888775
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.04 E-value=0.0021 Score=47.69 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc-----CccccCCCCCccEEEEecCCCCccCC
Q 043856 162 AFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELP 235 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~ 235 (275)
..|+|++|.++++..+..-.. .+ .......++|+.|++++| .+.. +-..+...++++.+++++|+.-....
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l--~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~ 91 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKAC--AEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 91 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHH--HHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHH--HHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence 568899999987654431110 00 001225789999999998 5543 33345567899999988874221110
Q ss_pred ccccccCCCCCcccceecc----------ccccchhhcCCCCccEEEec
Q 043856 236 IPEDRRTTDIPRLSSLRIG----------LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 236 ~~~~~~~~~l~~L~~L~l~----------l~~lp~~l~~L~~L~~L~l~ 274 (275)
......+...++|+.+.++ ...+...+...++|+.|+++
T Consensus 92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~ 140 (166)
T d1io0a_ 92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 140 (166)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence 0011145567788876664 22345566778899999875
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.26 E-value=0.0036 Score=46.44 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCCcccEEeEccCcccCc-----CccccCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc--------ccc
Q 043856 192 IMPRLSSLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG--------LKV 257 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~--------l~~ 257 (275)
..|+|+.|+++++..+.. +-..+...++|++|++++|. +..- .......+...+.|+.|+++ ...
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 568999999988654542 33456677899999999884 3211 01001123456889999996 333
Q ss_pred cchhhcCCCCccEEEecC
Q 043856 258 LPDYLLRTTMLQELSISE 275 (275)
Q Consensus 258 lp~~l~~L~~L~~L~l~~ 275 (275)
+-.++..-++|++|++++
T Consensus 92 l~~aL~~n~sL~~L~l~~ 109 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADN 109 (167)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhCCcCCEEECCC
Confidence 445677788999999863
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=89.65 E-value=0.02 Score=41.99 Aligned_cols=82 Identities=20% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCCcccEEeEccCcccCc-----CccccCCCCCccEEEEecCCCCccCCcc-ccccCCCCCcccceecc--------ccc
Q 043856 192 IMPRLSSLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELPIP-EDRRTTDIPRLSSLRIG--------LKV 257 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~~l~~L~~L~l~--------l~~ 257 (275)
..|+|+.|.+.++..++. +-..+...++|++|++++|. ++.-... -...+...++++.++++ +..
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 578999999988655542 34456678999999999983 3221100 00123446788888885 344
Q ss_pred cchhhcCCCCccEEEec
Q 043856 258 LPDYLLRTTMLQELSIS 274 (275)
Q Consensus 258 lp~~l~~L~~L~~L~l~ 274 (275)
+-..+...++|+.++|.
T Consensus 94 l~~~l~~~~~L~~l~L~ 110 (166)
T d1io0a_ 94 LVEALQSNTSLIELRID 110 (166)
T ss_dssp HHHGGGGCSSCCEEECC
T ss_pred HHHHHHhCccccEEeec
Confidence 55567778889887764
|