Citrus Sinensis ID: 043952


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
MDDYILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQFACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVSA
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHEEEccc
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHEEEEcc
MDDYILKLVVIVVVLWTAVFLFIRKifpnrsfnfCSRLVSTIHATLAvtltsppfktgdaQFACIVEITWTLAYLIYDLVCCsfdqrvnvdntIHHLISIVGIGAGLVYEKISSPFLHCREMLKElgyrdtglnltaDVTFAAIFTFARMvcephltyltpsarnPIIIKAMALGLQLVSA
MDDYILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQFACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVSA
MDDYIlklvvivvvlwtavflFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQFACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVSA
***YILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQFACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQL***
*DDYILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQFACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVSA
MDDYILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQFACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVSA
MDDYILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQFACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVSA
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDDYILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQFACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query181 2.2.26 [Sep-21-2011]
Q6ZRR5245 Transmembrane protein 136 yes no 0.745 0.551 0.253 1e-05
Q3TYE7245 Transmembrane protein 136 yes no 0.806 0.595 0.255 3e-05
Q0VD42245 Transmembrane protein 136 yes no 0.745 0.551 0.253 7e-05
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2 Back     alignment and function desciption
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 23/158 (14%)

Query: 16  WTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTS---------PPFKTGDAQFACIV 66
           W ++++    +  +RS+ +  RLV+  H  L++ L++         P    G       V
Sbjct: 16  WLSLYISFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQV 75

Query: 67  EI-TWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGI-------------GAGLVYEKI 112
            +   TL Y I+DL  C + Q        HH +SI+GI              A L   ++
Sbjct: 76  HVLCLTLGYFIFDLGWCVYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSEL 135

Query: 113 SSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARM 150
           ++P L  R  L+E G+  +      D  F A+FT  R+
Sbjct: 136 TNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRI 173





Homo sapiens (taxid: 9606)
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1 Back     alignment and function description
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
225458175231 PREDICTED: transmembrane protein 136 [Vi 0.983 0.770 0.584 1e-56
356551918250 PREDICTED: uncharacterized protein LOC10 1.0 0.724 0.571 1e-56
356564310242 PREDICTED: uncharacterized protein LOC10 1.0 0.747 0.566 2e-56
255634753217 unknown [Glycine max] 1.0 0.834 0.566 3e-56
388516813244 unknown [Lotus japonicus] 0.994 0.737 0.574 3e-56
255538748233 conserved hypothetical protein [Ricinus 1.0 0.776 0.532 3e-54
224082916222 predicted protein [Populus trichocarpa] 1.0 0.815 0.522 7e-52
357438093259 Transmembrane protein [Medicago truncatu 0.994 0.694 0.497 3e-50
449469953233 PREDICTED: uncharacterized protein LOC10 0.988 0.768 0.534 8e-50
449515752233 PREDICTED: uncharacterized LOC101213712 0.988 0.768 0.534 1e-49
>gi|225458175|ref|XP_002281067.1| PREDICTED: transmembrane protein 136 [Vitis vinifera] gi|302142550|emb|CBI19753.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 144/207 (69%), Gaps = 29/207 (14%)

Query: 1   MDDYILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPF----- 55
           M+DYI+KLVV  V+ W + F+ IR++FP RSF FC+RLVSTIHATLAVTL+S        
Sbjct: 1   MEDYIVKLVVSGVISWASTFMVIRRMFPKRSFGFCNRLVSTIHATLAVTLSSLTVEDWRC 60

Query: 56  -------KTGDAQFACIVEITWTLAYLIYDLVCCSF-DQRVNVDNTIHHLISIVGIGAGL 107
                  K+   Q   +     TLAYLIYDL+CC   D+RVN+DN+IHHL+SIVGIGAGL
Sbjct: 61  PVCPLASKSSPKQMQTLAV---TLAYLIYDLICCLLEDKRVNLDNSIHHLVSIVGIGAGL 117

Query: 108 VYE-------------KISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEP 154
            YE             +ISSPFLH RE+LKELGYRDT LNL  D+ FA IFT ARM+C P
Sbjct: 118 FYEMCGSEMVASLWITEISSPFLHLRELLKELGYRDTDLNLIVDMLFAIIFTIARMICGP 177

Query: 155 HLTYLTPSARNPIIIKAMALGLQLVSA 181
            L Y+T SA NP++IKAMALGLQLVSA
Sbjct: 178 CLVYVTLSASNPLLIKAMALGLQLVSA 204




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551918|ref|XP_003544319.1| PREDICTED: uncharacterized protein LOC100789395 [Glycine max] Back     alignment and taxonomy information
>gi|356564310|ref|XP_003550398.1| PREDICTED: uncharacterized protein LOC100801989 [Glycine max] Back     alignment and taxonomy information
>gi|255634753|gb|ACU17738.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388516813|gb|AFK46468.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255538748|ref|XP_002510439.1| conserved hypothetical protein [Ricinus communis] gi|223551140|gb|EEF52626.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224082916|ref|XP_002306890.1| predicted protein [Populus trichocarpa] gi|222856339|gb|EEE93886.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357438093|ref|XP_003589322.1| Transmembrane protein [Medicago truncatula] gi|358348470|ref|XP_003638269.1| Transmembrane protein [Medicago truncatula] gi|355478370|gb|AES59573.1| Transmembrane protein [Medicago truncatula] gi|355504204|gb|AES85407.1| Transmembrane protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449469953|ref|XP_004152683.1| PREDICTED: uncharacterized protein LOC101213712 isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515752|ref|XP_004164912.1| PREDICTED: uncharacterized LOC101213712 isoform 1 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
TAIR|locus:2028220231 AT1G45010 "AT1G45010" [Arabido 0.845 0.662 0.482 2.5e-33
TAIR|locus:2203256231 AT1G35180 "AT1G35180" [Arabido 0.629 0.493 0.582 8.5e-33
TAIR|locus:2203272229 AT1G35170 "AT1G35170" [Arabido 0.629 0.497 0.551 3e-30
UNIPROTKB|E1C635242 TMEM136 "Uncharacterized prote 0.839 0.628 0.272 3.5e-05
UNIPROTKB|F1NUQ1245 TMEM136 "Uncharacterized prote 0.839 0.620 0.272 3.6e-05
UNIPROTKB|Q6ZRR5245 TMEM136 "Transmembrane protein 0.839 0.620 0.267 0.00027
UNIPROTKB|E2QSX2245 TMEM136 "Uncharacterized prote 0.674 0.497 0.289 0.00037
UNIPROTKB|F6UPA7266 TMEM136 "Uncharacterized prote 0.674 0.458 0.289 0.00045
TAIR|locus:2028220 AT1G45010 "AT1G45010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 82/170 (48%), Positives = 107/170 (62%)

Query:    27 FPNRSFNFCSRLVSTIHATLAVT-LTSP--PFKTGDAQFACIVEITWTLAYLIYDLVCCS 83
             F NR  +     ++   ATL+V  L+ P  P  +  +     V + ++L+Y+IYDL+CC 
Sbjct:    37 FSNRLLSTAHATIAVTLATLSVQDLSCPVCPLASKPSHKQMDV-MAFSLSYMIYDLICCH 95

Query:    84 FDQRVNVDNTIHHLISIVGIGAGLVYEK-------------ISSPFLHCREMLKELGYRD 130
             FDQ  ++DN +HH +SI+G  AGL Y+K             ISSPF H RE+LKE+GY+D
Sbjct:    96 FDQVFSIDNAVHHFVSILGFIAGLAYQKSGSEIVATLWVAEISSPFFHLREILKEIGYKD 155

Query:   131 TGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVS 180
             T LNL ADV FA IFT AR+VC P L Y++ SA NPI IKAM  GLQLVS
Sbjct:   156 TKLNLAADVCFATIFTLARIVCGPFLVYVSLSADNPIFIKAMGSGLQLVS 205


GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2203256 AT1G35180 "AT1G35180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203272 AT1G35170 "AT1G35170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C635 TMEM136 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUQ1 TMEM136 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZRR5 TMEM136 "Transmembrane protein 136" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSX2 TMEM136 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6UPA7 TMEM136 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
smart00724205 smart00724, TLC, TRAM, LAG1 and CLN8 homology doma 2e-11
pfam03798198 pfam03798, TRAM_LAG1_CLN8, TLC domain 6e-06
>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains Back     alignment and domain information
 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 26/158 (16%)

Query: 29  NRSFNFCSRLVSTIHATLAVTL-------TSPPFKTGDAQ---FACIVEITWTLAYLIYD 78
           ++     +RLVS +H+ +A           S P      Q           ++L Y I+D
Sbjct: 1   SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLFSLGYFIHD 60

Query: 79  LVCCSFDQRVN----VDNTIHHLISIVGIGAGLVYEK------------ISSPFLHCREM 122
           LV     Q +      +  +HH+ +++ I    V               +S PFLH R++
Sbjct: 61  LVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKL 120

Query: 123 LKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLT 160
           L   G + + L     V FA +F   R++  P L    
Sbjct: 121 LNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTV 158


Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 181
KOG4474253 consensus Uncharacterized conserved protein [Funct 99.93
smart00724205 TLC TRAM, LAG1 and CLN8 homology domains. Protein 99.92
PF03798198 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL 99.91
KOG4561281 consensus Uncharacterized conserved protein, conta 99.86
COG5058395 LAG1 Protein transporter of the TRAM (translocatin 94.52
KOG1607318 consensus Protein transporter of the TRAM (translo 93.13
>KOG4474 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=99.93  E-value=6.3e-26  Score=186.14  Aligned_cols=171  Identities=26%  Similarity=0.347  Sum_probs=141.3

Q ss_pred             HHHHHHHHH-HHHHHHHHhhhCCCCccceeeehhHHHHHHHHHHhhhhhcccCCCCc-chh---------HHHHHHHHHH
Q 043952            7 KLVVIVVVL-WTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQF-ACI---------VEITWTLAYL   75 (181)
Q Consensus         7 ~~~~~s~~~-w~~~~~~~~~l~~~~~~~w~~r~vS~~Ha~i~~~~~~~~~~~~~~~~-~~~---------~~~~~s~GYF   75 (181)
                      .+.+.+.++ |...+.-.|+.++.|+.+|.|+.||.+||++++.++.+++.. +|+. .+|         .+.++|+|||
T Consensus        18 ~i~~~~~~~~w~~~f~~~~~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~-~~~~~~~~~~~~s~~~~~l~~fS~gYf   96 (253)
T KOG4474|consen   18 SIVVYSALFGWGLIFFDVRWFSVYQKKRFSNLTVSLLHSTISGLWALLSLLY-DPEMVDDPITYHSLSAYQLLLFSAGYF   96 (253)
T ss_pred             hhhHHHHHhhcceeeeeeEeeccccchhhhhhHHHHHHHHHHHHHHHHHHHh-CcccccCHHHHHhhhhHHHHHHHHHHH
Confidence            344555555 766555555566777999999999999999999999999884 4422 222         4889999999


Q ss_pred             HHHHHHHhhcc--CCChhhHHHHHHHHHHHHHHHhh------------cccccHhHhHHHHHHHcCCCCC-hHHHHHHHH
Q 043952           76 IYDLVCCSFDQ--RVNVDNTIHHLISIVGIGAGLVY------------EKISSPFLHCREMLKELGYRDT-GLNLTADVT  140 (181)
Q Consensus        76 ~~Dl~~~~~~~--~~~~~~l~HH~~~i~~~~~~l~~------------~e~Stpfln~R~~l~~~g~~~s-~~y~~n~~l  140 (181)
                      +||++++..++  ...++.++||++++.++..+++.            .|+||||+|.|.+++..|.+++ +.++++..+
T Consensus        97 iyD~vDm~~~~~s~~s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~l  176 (253)
T KOG4474|consen   97 IYDLVDMLMNEQSELSWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYL  176 (253)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHH
Confidence            99999999887  55699999999999999886544            4799999999999999999664 459999999


Q ss_pred             HHHHHHHHhhcchhhhheeeccC--CCchhHhhhhhhhhh
Q 043952          141 FAAIFTFARMVCEPHLTYLTPSA--RNPIIIKAMALGLQL  178 (181)
Q Consensus       141 ~~~~F~~~Ri~~~p~~~y~~~~~--~~~~~~k~~~~gl~~  178 (181)
                      ++++|+++|.+...|++++.+.+  +.|++.|+.+.|..+
T Consensus       177 N~i~f~~fR~~~~~~l~~~~i~~~~~~~~~~~~~~~gg~~  216 (253)
T KOG4474|consen  177 NLITFFFFRLIPQIYLTYFLIANAPFLHWYLKLFALGGLL  216 (253)
T ss_pred             HHHHHHHHHhccceeEEEEEeeeCCCcceehhHHHhhhHH
Confidence            99999999999999999888864  788999988877543



>smart00724 TLC TRAM, LAG1 and CLN8 homology domains Back     alignment and domain information
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices Back     alignment and domain information
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00