Citrus Sinensis ID: 043952
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | ||||||
| 225458175 | 231 | PREDICTED: transmembrane protein 136 [Vi | 0.983 | 0.770 | 0.584 | 1e-56 | |
| 356551918 | 250 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.724 | 0.571 | 1e-56 | |
| 356564310 | 242 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.747 | 0.566 | 2e-56 | |
| 255634753 | 217 | unknown [Glycine max] | 1.0 | 0.834 | 0.566 | 3e-56 | |
| 388516813 | 244 | unknown [Lotus japonicus] | 0.994 | 0.737 | 0.574 | 3e-56 | |
| 255538748 | 233 | conserved hypothetical protein [Ricinus | 1.0 | 0.776 | 0.532 | 3e-54 | |
| 224082916 | 222 | predicted protein [Populus trichocarpa] | 1.0 | 0.815 | 0.522 | 7e-52 | |
| 357438093 | 259 | Transmembrane protein [Medicago truncatu | 0.994 | 0.694 | 0.497 | 3e-50 | |
| 449469953 | 233 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.768 | 0.534 | 8e-50 | |
| 449515752 | 233 | PREDICTED: uncharacterized LOC101213712 | 0.988 | 0.768 | 0.534 | 1e-49 |
| >gi|225458175|ref|XP_002281067.1| PREDICTED: transmembrane protein 136 [Vitis vinifera] gi|302142550|emb|CBI19753.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 144/207 (69%), Gaps = 29/207 (14%)
Query: 1 MDDYILKLVVIVVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPF----- 55
M+DYI+KLVV V+ W + F+ IR++FP RSF FC+RLVSTIHATLAVTL+S
Sbjct: 1 MEDYIVKLVVSGVISWASTFMVIRRMFPKRSFGFCNRLVSTIHATLAVTLSSLTVEDWRC 60
Query: 56 -------KTGDAQFACIVEITWTLAYLIYDLVCCSF-DQRVNVDNTIHHLISIVGIGAGL 107
K+ Q + TLAYLIYDL+CC D+RVN+DN+IHHL+SIVGIGAGL
Sbjct: 61 PVCPLASKSSPKQMQTLAV---TLAYLIYDLICCLLEDKRVNLDNSIHHLVSIVGIGAGL 117
Query: 108 VYE-------------KISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEP 154
YE +ISSPFLH RE+LKELGYRDT LNL D+ FA IFT ARM+C P
Sbjct: 118 FYEMCGSEMVASLWITEISSPFLHLRELLKELGYRDTDLNLIVDMLFAIIFTIARMICGP 177
Query: 155 HLTYLTPSARNPIIIKAMALGLQLVSA 181
L Y+T SA NP++IKAMALGLQLVSA
Sbjct: 178 CLVYVTLSASNPLLIKAMALGLQLVSA 204
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551918|ref|XP_003544319.1| PREDICTED: uncharacterized protein LOC100789395 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356564310|ref|XP_003550398.1| PREDICTED: uncharacterized protein LOC100801989 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255634753|gb|ACU17738.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|388516813|gb|AFK46468.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
| >gi|255538748|ref|XP_002510439.1| conserved hypothetical protein [Ricinus communis] gi|223551140|gb|EEF52626.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224082916|ref|XP_002306890.1| predicted protein [Populus trichocarpa] gi|222856339|gb|EEE93886.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|357438093|ref|XP_003589322.1| Transmembrane protein [Medicago truncatula] gi|358348470|ref|XP_003638269.1| Transmembrane protein [Medicago truncatula] gi|355478370|gb|AES59573.1| Transmembrane protein [Medicago truncatula] gi|355504204|gb|AES85407.1| Transmembrane protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449469953|ref|XP_004152683.1| PREDICTED: uncharacterized protein LOC101213712 isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449515752|ref|XP_004164912.1| PREDICTED: uncharacterized LOC101213712 isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | ||||||
| TAIR|locus:2028220 | 231 | AT1G45010 "AT1G45010" [Arabido | 0.845 | 0.662 | 0.482 | 2.5e-33 | |
| TAIR|locus:2203256 | 231 | AT1G35180 "AT1G35180" [Arabido | 0.629 | 0.493 | 0.582 | 8.5e-33 | |
| TAIR|locus:2203272 | 229 | AT1G35170 "AT1G35170" [Arabido | 0.629 | 0.497 | 0.551 | 3e-30 | |
| UNIPROTKB|E1C635 | 242 | TMEM136 "Uncharacterized prote | 0.839 | 0.628 | 0.272 | 3.5e-05 | |
| UNIPROTKB|F1NUQ1 | 245 | TMEM136 "Uncharacterized prote | 0.839 | 0.620 | 0.272 | 3.6e-05 | |
| UNIPROTKB|Q6ZRR5 | 245 | TMEM136 "Transmembrane protein | 0.839 | 0.620 | 0.267 | 0.00027 | |
| UNIPROTKB|E2QSX2 | 245 | TMEM136 "Uncharacterized prote | 0.674 | 0.497 | 0.289 | 0.00037 | |
| UNIPROTKB|F6UPA7 | 266 | TMEM136 "Uncharacterized prote | 0.674 | 0.458 | 0.289 | 0.00045 |
| TAIR|locus:2028220 AT1G45010 "AT1G45010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 82/170 (48%), Positives = 107/170 (62%)
Query: 27 FPNRSFNFCSRLVSTIHATLAVT-LTSP--PFKTGDAQFACIVEITWTLAYLIYDLVCCS 83
F NR + ++ ATL+V L+ P P + + V + ++L+Y+IYDL+CC
Sbjct: 37 FSNRLLSTAHATIAVTLATLSVQDLSCPVCPLASKPSHKQMDV-MAFSLSYMIYDLICCH 95
Query: 84 FDQRVNVDNTIHHLISIVGIGAGLVYEK-------------ISSPFLHCREMLKELGYRD 130
FDQ ++DN +HH +SI+G AGL Y+K ISSPF H RE+LKE+GY+D
Sbjct: 96 FDQVFSIDNAVHHFVSILGFIAGLAYQKSGSEIVATLWVAEISSPFFHLREILKEIGYKD 155
Query: 131 TGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIIIKAMALGLQLVS 180
T LNL ADV FA IFT AR+VC P L Y++ SA NPI IKAM GLQLVS
Sbjct: 156 TKLNLAADVCFATIFTLARIVCGPFLVYVSLSADNPIFIKAMGSGLQLVS 205
|
|
| TAIR|locus:2203256 AT1G35180 "AT1G35180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2203272 AT1G35170 "AT1G35170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C635 TMEM136 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NUQ1 TMEM136 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6ZRR5 TMEM136 "Transmembrane protein 136" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QSX2 TMEM136 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6UPA7 TMEM136 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 181 | |||
| smart00724 | 205 | smart00724, TLC, TRAM, LAG1 and CLN8 homology doma | 2e-11 | |
| pfam03798 | 198 | pfam03798, TRAM_LAG1_CLN8, TLC domain | 6e-06 |
| >gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 26/158 (16%)
Query: 29 NRSFNFCSRLVSTIHATLAVTL-------TSPPFKTGDAQ---FACIVEITWTLAYLIYD 78
++ +RLVS +H+ +A S P Q ++L Y I+D
Sbjct: 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLFSLGYFIHD 60
Query: 79 LVCCSFDQRVN----VDNTIHHLISIVGIGAGLVYEK------------ISSPFLHCREM 122
LV Q + + +HH+ +++ I V +S PFLH R++
Sbjct: 61 LVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKL 120
Query: 123 LKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLT 160
L G + + L V FA +F R++ P L
Sbjct: 121 LNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTV 158
|
Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205 |
| >gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| KOG4474 | 253 | consensus Uncharacterized conserved protein [Funct | 99.93 | |
| smart00724 | 205 | TLC TRAM, LAG1 and CLN8 homology domains. Protein | 99.92 | |
| PF03798 | 198 | TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL | 99.91 | |
| KOG4561 | 281 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| COG5058 | 395 | LAG1 Protein transporter of the TRAM (translocatin | 94.52 | |
| KOG1607 | 318 | consensus Protein transporter of the TRAM (translo | 93.13 |
| >KOG4474 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-26 Score=186.14 Aligned_cols=171 Identities=26% Similarity=0.347 Sum_probs=141.3
Q ss_pred HHHHHHHHH-HHHHHHHHhhhCCCCccceeeehhHHHHHHHHHHhhhhhcccCCCCc-chh---------HHHHHHHHHH
Q 043952 7 KLVVIVVVL-WTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQF-ACI---------VEITWTLAYL 75 (181)
Q Consensus 7 ~~~~~s~~~-w~~~~~~~~~l~~~~~~~w~~r~vS~~Ha~i~~~~~~~~~~~~~~~~-~~~---------~~~~~s~GYF 75 (181)
.+.+.+.++ |...+.-.|+.++.|+.+|.|+.||.+||++++.++.+++.. +|+. .+| .+.++|+|||
T Consensus 18 ~i~~~~~~~~w~~~f~~~~~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~-~~~~~~~~~~~~s~~~~~l~~fS~gYf 96 (253)
T KOG4474|consen 18 SIVVYSALFGWGLIFFDVRWFSVYQKKRFSNLTVSLLHSTISGLWALLSLLY-DPEMVDDPITYHSLSAYQLLLFSAGYF 96 (253)
T ss_pred hhhHHHHHhhcceeeeeeEeeccccchhhhhhHHHHHHHHHHHHHHHHHHHh-CcccccCHHHHHhhhhHHHHHHHHHHH
Confidence 344555555 766555555566777999999999999999999999999884 4422 222 4889999999
Q ss_pred HHHHHHHhhcc--CCChhhHHHHHHHHHHHHHHHhh------------cccccHhHhHHHHHHHcCCCCC-hHHHHHHHH
Q 043952 76 IYDLVCCSFDQ--RVNVDNTIHHLISIVGIGAGLVY------------EKISSPFLHCREMLKELGYRDT-GLNLTADVT 140 (181)
Q Consensus 76 ~~Dl~~~~~~~--~~~~~~l~HH~~~i~~~~~~l~~------------~e~Stpfln~R~~l~~~g~~~s-~~y~~n~~l 140 (181)
+||++++..++ ...++.++||++++.++..+++. .|+||||+|.|.+++..|.+++ +.++++..+
T Consensus 97 iyD~vDm~~~~~s~~s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~l 176 (253)
T KOG4474|consen 97 IYDLVDMLMNEQSELSWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYL 176 (253)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHH
Confidence 99999999887 55699999999999999886544 4799999999999999999664 459999999
Q ss_pred HHHHHHHHhhcchhhhheeeccC--CCchhHhhhhhhhhh
Q 043952 141 FAAIFTFARMVCEPHLTYLTPSA--RNPIIIKAMALGLQL 178 (181)
Q Consensus 141 ~~~~F~~~Ri~~~p~~~y~~~~~--~~~~~~k~~~~gl~~ 178 (181)
++++|+++|.+...|++++.+.+ +.|++.|+.+.|..+
T Consensus 177 N~i~f~~fR~~~~~~l~~~~i~~~~~~~~~~~~~~~gg~~ 216 (253)
T KOG4474|consen 177 NLITFFFFRLIPQIYLTYFLIANAPFLHWYLKLFALGGLL 216 (253)
T ss_pred HHHHHHHHHhccceeEEEEEeeeCCCcceehhHHHhhhHH
Confidence 99999999999999999888864 788999988877543
|
|
| >smart00724 TLC TRAM, LAG1 and CLN8 homology domains | Back alignment and domain information |
|---|
| >PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices | Back alignment and domain information |
|---|
| >KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
| >COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00