Citrus Sinensis ID: 043955
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M1V3 | 960 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.869 | 0.596 | 0.0 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.985 | 0.924 | 0.38 | 1e-173 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.997 | 0.858 | 0.389 | 1e-173 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.997 | 0.782 | 0.363 | 1e-166 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.923 | 0.885 | 0.385 | 1e-165 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.979 | 0.927 | 0.375 | 1e-163 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.876 | 0.889 | 0.389 | 1e-154 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.928 | 0.957 | 0.357 | 1e-150 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.938 | 0.922 | 0.348 | 1e-150 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.982 | 0.944 | 0.339 | 1e-149 |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/836 (59%), Positives = 645/836 (77%), Gaps = 1/836 (0%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
MYGKCGS+ DAE++FD++ RT F WN M+GAYVSNGEP L Y MRV G+ + +
Sbjct: 125 MYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSS 184
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
FP ++KACA L+D+ G+++H L++K GY ST FIVN+LV+MYAK D AR+LFD
Sbjct: 185 FPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 244
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
EK D VLWNSI+S+YS SG+ LE L LFREM G N+YT V+AL AC+ S+ LG
Sbjct: 245 EKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGK 304
Query: 181 EIHAATVKSG-QNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQN 239
EIHA+ +KS + ++YV NALIAMY RCGKM +A +L Q+ N D V+WNS++ G+VQN
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364
Query: 240 DLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIG 299
+Y +A++FF ++ AG K D+V + ++ASGRL NLL G ELHAY IK G+ S+LQ+G
Sbjct: 365 LMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVG 424
Query: 300 NTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLD 359
NTL+DMY+KC YMGR F +M +D ISWTT+IAGYAQN+CH++ALELFR V + ++
Sbjct: 425 NTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME 484
Query: 360 ADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVF 419
D MI+GS+L A S LK M KEIH +I+RKGL D VI N +VDVYGKC N+ Y+ VF
Sbjct: 485 IDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVF 544
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479
ESI+ KDVVSWTSMISS NG +EA+ELF M E + +DS+ L+ LSAA+SLS L
Sbjct: 545 ESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALN 604
Query: 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG 539
KG+E++ +++RKGF LEGS+A ++VDMYA CG L A VF+ ++ K L+ +TSMINA G
Sbjct: 605 KGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYG 664
Query: 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599
+HG GK A++LF KM E+ +PDHI+FLALLYACSH+GL++EG+ FL+IM +Y+L+PWP
Sbjct: 665 MHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWP 724
Query: 600 EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659
EHY CLVD+LGRAN + EA++FV+ M+ EPTAEVWCALL ACR HS KE+GEI A++LLE
Sbjct: 725 EHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLE 784
Query: 660 LDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDK 719
L+P NPGN VL+SNVFA +W DVE+VR +M+ SG++K PG SWIE+ K+H F ARDK
Sbjct: 785 LEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDK 844
Query: 720 SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLK 779
SH ES EIY+KL+E+T KLERE GYVA T+FVLHNV+E EKVQML+GHSER+AIAYG+L+
Sbjct: 845 SHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLR 904
Query: 780 STEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+ + + +RITKNLRVC DCH+FCKLVS+LF R++V+RDANRFHHFE+G+CSCGD W
Sbjct: 905 TPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 610 bits (1574), Expect = e-173, Method: Compositional matrix adjust.
Identities = 323/850 (38%), Positives = 518/850 (60%), Gaps = 27/850 (3%)
Query: 7 SVLDAEQLFDKVSQ-RTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVI 65
+V A +F +SQ R+ W +L + V + + TY M VLGI D + FP ++
Sbjct: 47 AVSGAPSIF--ISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALL 104
Query: 66 KACAMLKDLDCGAKIHGLVLKCGY--DSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKE 123
KA A L+D++ G +IH V K GY DS + N+LV +Y KC DF ++FDR+ E+
Sbjct: 105 KAVADLQDMELGKQIHAHVYKFGYGVDSVT-VANTLVNLYRKCGDFGAVYKVFDRISERN 163
Query: 124 DVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFE---TLGM 180
V WNS+IS+ + + AL FR M + +++T V+ + AC + +G
Sbjct: 164 QVS-WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
++HA ++ G+ L ++ N L+AMY + GK+ + +L +D V+WN++L+ QN+
Sbjct: 223 QVHAYGLRKGE-LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQ-IG 299
+A+++ RE+ G +PD+ + + A L L GKELHAYA+K G + + +G
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG 341
Query: 300 NTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLE-GL 358
+ L+DMY C V RVF M + W +IAGY+QN +AL LF ++ GL
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 401
Query: 359 DADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRN 417
A+ + V+ AC S+ + IHG+++++GL D + N ++D+Y + G ID +
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461
Query: 418 VFESIESKDVVSWTSMISSYVHNGLANEALELFYLM-----------NEANVESDSITLV 466
+F +E +D+V+W +MI+ YV + +AL L + M + +++ +SITL+
Sbjct: 462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521
Query: 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK 526
+ L + ++LS L KGKE++ + I+ + +V S+LVDMYA+CG L ++ KVF+ + K
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581
Query: 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFL 586
++I W +I A G+HG G+ AIDL M + P+ +TF+++ ACSHSG+++EG +
Sbjct: 582 NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF 641
Query: 587 EIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIE-PTAEVWCALLGACRVHS 645
+M+ DY ++P +HYAC+VDLLGRA ++EAYQ + M + A W +LLGA R+H+
Sbjct: 642 YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHN 701
Query: 646 NKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWI 705
N E+GEI A+ L++L+P +YVL++N+++++ W +VR M+ G++K PG SWI
Sbjct: 702 NLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761
Query: 706 EIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLY 765
E G+++H F+A D SH +S+++ L + E++ +E GYV T VLHNVEE+EK +L
Sbjct: 762 EHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKE-GYVPDTSCVLHNVEEDEKEILLC 820
Query: 766 GHSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFE 825
GHSE+LAIA+G+L ++ G++IR+ KNLRVC DCH K +S++ RE+++RD RFH F+
Sbjct: 821 GHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFK 880
Query: 826 AGVCSCGDYW 835
G CSCGDYW
Sbjct: 881 NGTCSCGDYW 890
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 609 bits (1570), Expect = e-173, Method: Compositional matrix adjust.
Identities = 329/844 (38%), Positives = 496/844 (58%), Gaps = 11/844 (1%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRM-RVLGISVDAF 59
MY CGS D+ +FD + + +F WNA++ +Y N VLET+ M + D F
Sbjct: 129 MYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHF 188
Query: 60 TFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM 119
T+PCVIKACA + D+ G +HGLV+K G F+ N+LV+ Y A QLFD M
Sbjct: 189 TYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM 248
Query: 120 GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRV----GLVTNAYTFVAALQACEDSSF 175
E+ ++V WNS+I +S +G E+ L EM + + T V L C
Sbjct: 249 PER-NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE 307
Query: 176 ETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTG 235
LG +H VK + ++ + NAL+ MY++CG +T A + NK+ VSWN+M+ G
Sbjct: 308 IGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGG 367
Query: 236 FVQNDLYCKAMQFFRELQGAGQ--KPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFV 293
F R++ G+ K D+V +NAV L + KELH Y++KQ FV
Sbjct: 368 FSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFV 427
Query: 294 SDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTV 353
+ + N + YAKC ++Y RVF+ + ++ SW +I G+AQ+N +L+ +
Sbjct: 428 YNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM 487
Query: 354 QLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNI 412
++ GL D + S+L ACS LK + KE+HG+IIR L DL + +++ +Y CG +
Sbjct: 488 KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGEL 547
Query: 413 DYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA 472
+ +F+++E K +VSW ++I+ Y+ NG + AL +F M ++ I+++ A
Sbjct: 548 CTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607
Query: 473 SSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWT 532
S L L+ G+E + + ++ + +A SL+DMYA+ G++ ++KVFN ++ K W
Sbjct: 608 SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 667
Query: 533 SMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCD 592
+MI G+HG K AI LF +M+ PD +TFL +L AC+HSGLI+EG ++L+ M+
Sbjct: 668 AMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSS 727
Query: 593 YQLDPWPEHYACLVDLLGRANHLEEAYQFV-RSMQIEPTAEVWCALLGACRVHSNKELGE 651
+ L P +HYAC++D+LGRA L++A + V M E +W +LL +CR+H N E+GE
Sbjct: 728 FGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGE 787
Query: 652 IVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKI 711
VA KL EL+P P NYVL+SN++A KW+DV +VR RM L+K G SWIE+ K+
Sbjct: 788 KVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKV 847
Query: 712 HSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERL 771
SF+ ++ +EI K L I E + GY T V H++ EEEK++ L GHSE+L
Sbjct: 848 FSFVVGERFLDGFEEI-KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKL 906
Query: 772 AIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSC 831
A+ YG++K++EG+ IR+ KNLR+CVDCH+ KL+S++ RE+VVRD RFHHF+ GVCSC
Sbjct: 907 ALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSC 966
Query: 832 GDYW 835
GDYW
Sbjct: 967 GDYW 970
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 585 bits (1508), Expect = e-166, Method: Compositional matrix adjust.
Identities = 304/836 (36%), Positives = 485/836 (58%), Gaps = 3/836 (0%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
+Y + G V A ++FD + + +W AM+ N + + M VLGI +
Sbjct: 231 LYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 290
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
F V+ AC ++ L+ G ++HGLVLK G+ S ++ N+LV++Y + A +F M
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
++ D V +N++I+ S G +A+ LF+ M GL ++ T + + AC G
Sbjct: 351 QR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
++HA T K G + AL+ +YA+C + A + E ++ V WN ML + D
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300
+ + FR++Q P+Q + + RLG+L G+++H+ IK F + + +
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDA 360
L+DMYAK ++ + + +D +SWTT+IAGY Q N KAL FR + G+ +
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589
Query: 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNVF 419
D + + + + AC+GL+ + + ++IH G S DL NA+V +Y +CG I+ S F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479
E E+ D ++W +++S + +G EAL +F MN +++++ T SA+ AAS + +K
Sbjct: 650 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 709
Query: 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG 539
+GK+++ I + G++ E V ++L+ MYA+CG++ A K F V TK+ + W ++INA
Sbjct: 710 QGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769
Query: 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599
HG G A+D F +M + P+H+T + +L ACSH GL+++G + E M +Y L P P
Sbjct: 770 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 829
Query: 600 EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659
EHY C+VD+L RA L A +F++ M I+P A VW LL AC VH N E+GE A LLE
Sbjct: 830 EHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 889
Query: 660 LDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDK 719
L+P + YVL+SN++A S+KW + R +M+ G+KK PG SWIE+ N IHSF D+
Sbjct: 890 LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949
Query: 720 SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLK 779
+H +DEI++ ++T++ E GYV +L+ ++ E+K +++ HSE+LAI++G+L
Sbjct: 950 NHPLADEIHEYFQDLTKR-ASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLS 1008
Query: 780 STEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
I + KNLRVC DCH++ K VS++ RE++VRDA RFHHFE G CSC DYW
Sbjct: 1009 LPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1499), Expect = e-165, Method: Compositional matrix adjust.
Identities = 304/789 (38%), Positives = 485/789 (61%), Gaps = 18/789 (2%)
Query: 56 VDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQL 115
+D T V++ CA K L G ++ + G+ + + L MY C D ++A ++
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 116 FDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSF 175
FD + + E + WN +++ + SG ++GLF++M G+ ++YTF +C SF
Sbjct: 152 FDEV-KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF-----SCVSKSF 205
Query: 176 ETL-----GMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWN 230
+L G ++H +KSG + V N+L+A Y + ++ A V ++ +D +SWN
Sbjct: 206 SSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWN 265
Query: 231 SMLTGFVQNDLYCKAMQFFRELQGAGQKPD--QVCTVNAVSASGRLGNLLNGKELHAYAI 288
S++ G+V N L K + F ++ +G + D + +V A A RL +L G+ +H+ +
Sbjct: 266 SIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL--GRAVHSIGV 323
Query: 289 KQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALE 348
K F + + NTL+DMY+KC ++ VF +M+ + +S+T++IAGYA+ +A++
Sbjct: 324 KACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVK 383
Query: 349 LFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYG 407
LF ++ EG+ DV + +VL C+ + + + K +H +I L D+ + NA++D+Y
Sbjct: 384 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYA 443
Query: 408 KCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELF-YLMNEANVESDSITLV 466
KCG++ + VF + KD++SW ++I Y N ANEAL LF L+ E D T+
Sbjct: 444 KCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVA 503
Query: 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK 526
L A +SLS KG+E++G+I+R G+ + VA+SLVDMYA+CGAL +A+ +F+ + +K
Sbjct: 504 CVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASK 563
Query: 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFL 586
DL+ WT MI G+HG GK AI LF +M D I+F++LLYACSHSGL++EG +F
Sbjct: 564 DLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFF 623
Query: 587 EIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSN 646
IMR + +++P EHYAC+VD+L R L +AY+F+ +M I P A +W ALL CR+H +
Sbjct: 624 NIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHD 683
Query: 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIE 706
+L E VA+K+ EL+P N G YVL++N++A + KW+ V+++R R+ GL+K PG SWIE
Sbjct: 684 VKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743
Query: 707 IGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYG 766
I +++ F+A D S+ E++ I L ++ ++ E GY T++ L + EE EK + L G
Sbjct: 744 IKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEE-GYSPLTKYALIDAEEMEKEEALCG 802
Query: 767 HSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEA 826
HSE+LA+A G++ S G +IR+TKNLRVC DCH K +S+L RE+V+RD+NRFH F+
Sbjct: 803 HSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862
Query: 827 GVCSCGDYW 835
G CSC +W
Sbjct: 863 GHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 310/826 (37%), Positives = 508/826 (61%), Gaps = 8/826 (0%)
Query: 14 LFDKVSQ-RTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLK 72
+F +VS + V+ WN+++ A+ NG LE Y ++R +S D +TFP VIKACA L
Sbjct: 61 VFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLF 120
Query: 73 DLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSII 132
D + G ++ +L G++S F+ N+LV MY++ +ARQ+FD M + D+V WNS+I
Sbjct: 121 DAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLI 179
Query: 133 SAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQN 192
S YS+ G EAL ++ E++ +V +++T + L A + G +H +KSG N
Sbjct: 180 SGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVN 239
Query: 193 LQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFREL 252
V V N L+AMY + + T+A V +++ +DSVS+N+M+ G+++ ++ ++++ F L
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF--L 297
Query: 253 QGAGQ-KPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCC 311
+ Q KPD + + + A G L +L K ++ Y +K GFV + + N L+D+YAKC
Sbjct: 298 ENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGD 357
Query: 312 VNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA 371
+ VF M +D +SW +II+GY Q+ ++A++LF+ + + AD + ++
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISV 417
Query: 372 CSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSW 430
+ L + K +H I+ G+ DL + NA++D+Y KCG + S +F S+ + D V+W
Sbjct: 418 STRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTW 477
Query: 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR 490
++IS+ V G L++ M ++ V D T + L +SL+ + GKE++ ++R
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537
Query: 491 KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDL 550
G+ E + ++L++MY++CG L+ +++VF + +D++ WT MI A G++G G+ A++
Sbjct: 538 FGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALET 597
Query: 551 FYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLG 610
F ME PD + F+A++YACSHSGL++EG E M+ Y++DP EHYAC+VDLL
Sbjct: 598 FADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLS 657
Query: 611 RANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670
R+ + +A +F+++M I+P A +W ++L ACR + E E V+++++EL+P +PG +L
Sbjct: 658 RSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSIL 717
Query: 671 ISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKK 730
SN +AA RKW V +R ++ + K PG SWIE+G +H F + D S +S+ IYK
Sbjct: 718 ASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKS 777
Query: 731 LAEITEKLEREGGYVAQTQFVLHNV-EEEEKVQMLYGHSERLAIAYGVLKSTEGSLIRIT 789
L EI L + GY+ + V N+ EEEEK +++ GHSERLAIA+G+L + G+ +++
Sbjct: 778 L-EILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVM 836
Query: 790 KNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
KNLRVC DCH KL+S++ GRE++VRDANRFH F+ G CSC D W
Sbjct: 837 KNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/745 (38%), Positives = 450/745 (60%), Gaps = 13/745 (1%)
Query: 95 IVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFRE-MQR 153
I LV +Y + AR FD + + DV WN +IS Y +G E + F M
Sbjct: 88 ISAKLVNLYCYLGNVALARHTFDHI-QNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLS 146
Query: 154 VGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTE 213
GL + TF + L+AC G +IH +K G VYVA +LI +Y+R +
Sbjct: 147 SGLTPDYRTFPSVLKACRTV---IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGN 203
Query: 214 AAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGR 273
A + ++ +D SWN+M++G+ Q+ +A+ L+ D V V+ +SA
Sbjct: 204 ARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTE 259
Query: 274 LGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTI 333
G+ G +H+Y+IK G S+L + N L+D+YA+ + +VF +M +D ISW +I
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSI 319
Query: 334 IAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKG- 392
I Y N L+A+ LF+ ++L + D + + S+ S L + + + G+ +RKG
Sbjct: 320 IKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW 379
Query: 393 -LSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFY 451
L D+ I NA+V +Y K G +D +R VF + + DV+SW ++IS Y NG A+EA+E++
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439
Query: 452 LMNE-ANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC 510
+M E + ++ T VS L A S L++G +L+G +++ G L+ V +SL DMY +C
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKC 499
Query: 511 GALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALL 570
G L+ A +F + + + W ++I +G HG G+ A+ LF +M E PDHITF+ LL
Sbjct: 500 GRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL 559
Query: 571 YACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPT 630
ACSHSGL++EG+ E+M+ DY + P +HY C+VD+ GRA LE A +F++SM ++P
Sbjct: 560 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 619
Query: 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690
A +W ALL ACRVH N +LG+I ++ L E++P + G +VL+SN++A++ KW+ V+++R
Sbjct: 620 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSI 679
Query: 691 MRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQF 750
G GL+KTPG S +E+ NK+ F +++H +E+Y++L + KL + GYV +F
Sbjct: 680 AHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKL-KMIGYVPDHRF 738
Query: 751 VLHNVEEEEKVQMLYGHSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFG 810
VL +VE++EK +L HSERLAIA+ ++ + + IRI KNLRVC DCHS K +S++
Sbjct: 739 VLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITE 798
Query: 811 RELVVRDANRFHHFEAGVCSCGDYW 835
RE++VRD+NRFHHF+ GVCSCGDYW
Sbjct: 799 REIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust.
Identities = 281/786 (35%), Positives = 465/786 (59%), Gaps = 11/786 (1%)
Query: 54 ISVDAFTFPC--VIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRK 111
I + + P +++ C+ LK+L +I LV K G F LV+++ + +
Sbjct: 31 IPANVYEHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDE 87
Query: 112 ARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACE 171
A ++F+ + K +V L+++++ ++ +AL F M+ + Y F L+ C
Sbjct: 88 AARVFEPIDSKLNV-LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCG 146
Query: 172 DSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNS 231
D + +G EIH VKSG +L ++ L MYA+C ++ EA V ++ +D VSWN+
Sbjct: 147 DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNT 206
Query: 232 MLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQG 291
++ G+ QN + A++ + + KP + V+ + A L + GKE+H YA++ G
Sbjct: 207 IVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG 266
Query: 292 FVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFR 351
F S + I L+DMYAKC + ++F M ++ +SW ++I Y QN +A+ +F+
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326
Query: 352 TVQLEGL-DADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKC 409
+ EG+ DV ++G+ L AC+ L + + + IH + GL ++ ++N+++ +Y KC
Sbjct: 327 KMLDEGVKPTDVSVMGA-LHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKC 385
Query: 410 GNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSAL 469
+D + ++F ++S+ +VSW +MI + NG +AL F M V+ D+ T VS +
Sbjct: 386 KEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVI 445
Query: 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLI 529
+A + LSI K ++G ++R + V ++LVDMYA+CGA+ IA +F+ + + +
Sbjct: 446 TAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVT 505
Query: 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIM 589
W +MI+ G HG GK A++LF +M+ + P+ +TFL+++ ACSHSGL+ G K +M
Sbjct: 506 TWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMM 565
Query: 590 RCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKEL 649
+ +Y ++ +HY +VDLLGRA L EA+ F+ M ++P V+ A+LGAC++H N
Sbjct: 566 KENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNF 625
Query: 650 GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGN 709
E A++L EL+P + G +VL++N++ A+ W+ V QVR+ M GL+KTPG S +EI N
Sbjct: 626 AEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKN 685
Query: 710 KIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSE 769
++HSF + +H +S +IY L ++ + +E GYV T VL VE + K Q+L HSE
Sbjct: 686 EVHSFFSGSTAHPDSKKIYAFLEKLICHI-KEAGYVPDTNLVL-GVENDVKEQLLSTHSE 743
Query: 770 RLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVC 829
+LAI++G+L +T G+ I + KNLRVC DCH+ K +S + GRE+VVRD RFHHF+ G C
Sbjct: 744 KLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGAC 803
Query: 830 SCGDYW 835
SCGDYW
Sbjct: 804 SCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/840 (34%), Positives = 467/840 (55%), Gaps = 56/840 (6%)
Query: 46 YSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAK 105
Y ++ + S T P I C + + IH +L G + + + + L++ Y
Sbjct: 17 YIKVSLFSTSAPEIT-PPFIHKCKTISQVKL---IHQKLLSFGILTLN-LTSHLISTYIS 71
Query: 106 CYDFRKARQLFDRMGEKE-DVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFV 164
A L R + V WNS+I +Y +G + L LF M + + YTF
Sbjct: 72 VGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFP 131
Query: 165 AALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENK 224
+AC + S G HA ++ +G V+V NAL+AMY+RC +++A V ++
Sbjct: 132 FVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVW 191
Query: 225 DSVSWNSMLTGFVQNDLYCKAMQFFRELQGA-GQKPDQVCTVNAVSASGRLGNLLNGKEL 283
D VSWNS++ + + A++ F + G +PD + VN + LG GK+L
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL 251
Query: 284 HAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCH 343
H +A+ + ++ +GN L+DMYAKC ++ VF M+ +D +SW ++AGY+Q
Sbjct: 252 HCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRF 311
Query: 344 LKALELFRTVQLEGLDADVMI-----------------------------------IGSV 368
A+ LF +Q E + DV+ + SV
Sbjct: 312 EDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371
Query: 369 LMACSGLKCMSQTKEIHGYIIRKGLS--------DLVILNAIVDVYGKCGNIDYSRNVFE 420
L C+ + + KEIH Y I+ + + +++N ++D+Y KC +D +R +F+
Sbjct: 372 LSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFD 431
Query: 421 SIESK--DVVSWTSMISSYVHNGLANEALELFYLMNEANVES--DSITLVSALSAASSLS 476
S+ K DVV+WT MI Y +G AN+ALEL M E + ++ ++ T+ AL A +SL+
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLA 491
Query: 477 ILKKGKELNGFIIRKGFN-LEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMI 535
L+ GK+++ + +R N + V++ L+DMYA+CG++ A VF+ + K+ + WTS++
Sbjct: 492 ALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLM 551
Query: 536 NANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQL 595
G+HG G+ A+ +F +M F D +T L +LYACSHSG+I++G ++ M+ + +
Sbjct: 552 TGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGV 611
Query: 596 DPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAK 655
P PEHYACLVDLLGRA L A + + M +EP VW A L CR+H ELGE A+
Sbjct: 612 SPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAE 671
Query: 656 KLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFI 715
K+ EL + G+Y L+SN++A + +WKDV ++R MR G+KK PG SW+E +F
Sbjct: 672 KITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFF 731
Query: 716 ARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAY 775
DK+H + EIY+ L + +++ ++ GYV +T F LH+V++EEK +L+ HSE+LA+AY
Sbjct: 732 VGDKTHPHAKEIYQVLLDHMQRI-KDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAY 790
Query: 776 GVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
G+L + +G+ IRITKNLRVC DCH+ +SR+ ++++RD++RFHHF+ G CSC YW
Sbjct: 791 GILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 282/830 (33%), Positives = 478/830 (57%), Gaps = 10/830 (1%)
Query: 10 DAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACA 69
+A LFDK R ++ ++L + +G + + LG+ +D F V+K A
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104
Query: 70 MLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWN 129
L D G ++H +K G+ + SLV Y K +F+ R++FD M E+ +VV W
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER-NVVTWT 163
Query: 130 SIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKS 189
++IS Y+ + E L LF MQ G N++TF AAL + G+++H VK+
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 223
Query: 190 GQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFF 249
G + + V+N+LI +Y +CG + +A + + E K V+WNSM++G+ N L +A+ F
Sbjct: 224 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 283
Query: 250 RELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKC 309
++ + + + + L L ++LH +K GF+ D I LM Y+KC
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKC 343
Query: 310 CCVNYMGRVFYQMT-AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSV 368
+ R+F ++ + +SWT +I+G+ QN+ +A++LF ++ +G+ + +
Sbjct: 344 TAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVI 403
Query: 369 LMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDV 427
L A L +S + E+H +++ + A++D Y K G ++ + VF I+ KD+
Sbjct: 404 LTA---LPVISPS-EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDI 459
Query: 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSA-ASSLSILKKGKELNG 486
V+W++M++ Y G A+++F + + ++ + T S L+ A++ + + +GK+ +G
Sbjct: 460 VAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHG 519
Query: 487 FIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKV 546
F I+ + V+S+L+ MYA+ G ++ A +VF + KDL+ W SMI+ HG+
Sbjct: 520 FAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMK 579
Query: 547 AIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLV 606
A+D+F +M+ D +TF+ + AC+H+GL+ EG+K+ +IM D ++ P EH +C+V
Sbjct: 580 ALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMV 639
Query: 607 DLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG 666
DL RA LE+A + + +M + +W +L ACRVH ELG + A+K++ + P +
Sbjct: 640 DLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSA 699
Query: 667 NYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDE 726
YVL+SN++A S W++ +VR M +KK PG SWIE+ NK +SF+A D+SH D+
Sbjct: 700 AYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQ 759
Query: 727 IYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKSTEGSLI 786
IY KL +++ +L ++ GY T +VL ++++E K +L HSERLAIA+G++ + +GS +
Sbjct: 760 IYMKLEDLSTRL-KDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPL 818
Query: 787 RITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEA-GVCSCGDYW 835
I KNLRVC DCH KL++++ RE+VVRD+NRFHHF + GVCSCGD+W
Sbjct: 819 LIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | ||||||
| 359495457 | 993 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.825 | 0.693 | 0.0 | |
| 255559863 | 835 | pentatricopeptide repeat-containing prot | 1.0 | 1.0 | 0.687 | 0.0 | |
| 147801171 | 957 | hypothetical protein VITISV_014689 [Viti | 0.982 | 0.856 | 0.691 | 0.0 | |
| 224082698 | 787 | predicted protein [Populus trichocarpa] | 0.926 | 0.983 | 0.698 | 0.0 | |
| 356502788 | 923 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.904 | 0.629 | 0.0 | |
| 356574473 | 923 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.904 | 0.627 | 0.0 | |
| 357440579 | 1212 | Pentatricopeptide repeat-containing prot | 1.0 | 0.688 | 0.626 | 0.0 | |
| 218526158 | 960 | RecName: Full=Pentatricopeptide repeat-c | 1.0 | 0.869 | 0.596 | 0.0 | |
| 357167803 | 940 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.887 | 0.536 | 0.0 | |
| 297817672 | 1005 | pentatricopeptide repeat-containing prot | 0.923 | 0.767 | 0.584 | 0.0 |
| >gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein At3g63370-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1234 bits (3193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/835 (69%), Positives = 698/835 (83%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
MYGKCG ++DAE+LFD + +T+FTWNAM+GAYV+NGEPL LE Y MRV GI +DA T
Sbjct: 159 MYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACT 218
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
FPC++KAC +LKD CGA++HGL +K GY S F+ NS+V MY KC D ARQLFDRM
Sbjct: 219 FPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMP 278
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
EKEDVV WNS+ISAYS++GQ +EAL LF EMQ+ L N YTFVAALQACEDSSF GM
Sbjct: 279 EKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM 338
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
IHA +KS + V+VANALIAMYAR GKM EAA + Y +++ D++SWNSML+GFVQN
Sbjct: 339 FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 398
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300
LY +A+QF+ E++ AGQKPD V ++ ++AS R GN LNG ++HAYA+K G SDLQ+GN
Sbjct: 399 LYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGN 458
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDA 360
+L+DMYAK C + YM +F +M +D +SWTTIIAG+AQN H +ALELFR VQLEG+D
Sbjct: 459 SLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDL 518
Query: 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFE 420
DVM+I S+L+ACSGLK +S KEIH YIIRKGLSDLV+ N IVDVYG+CGN+DY+ +FE
Sbjct: 519 DVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFE 578
Query: 421 SIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKK 480
IE KDVVSWTSMIS YVHNGLANEALELF+LM E VE DSI+LVS LSAA+SLS LKK
Sbjct: 579 LIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKK 638
Query: 481 GKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGL 540
GKE++GF+IRKGF LEGS+AS+LVDMYARCG L+ + VFN ++ KDL+LWTSMINA G+
Sbjct: 639 GKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM 698
Query: 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE 600
HG G+ AIDLF +ME ES APDHI F+A+LYACSHSGL+NEG++FLE M+ +YQL+PWPE
Sbjct: 699 HGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPE 758
Query: 601 HYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLEL 660
HY CLVDLLGRANHLEEAYQFV+ M++EPTAEVWCALLGAC++HSNKELGEI A+KLLE+
Sbjct: 759 HYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEM 818
Query: 661 DPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKS 720
DP NPGNYVL+SNV+AA R+WKDVE+VRMRM+ SGLKK PG SWIE+GNK+H+F+ARDKS
Sbjct: 819 DPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKS 878
Query: 721 HSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKS 780
H +S EIY KL++ITEKL +EGGYVAQT+FVLHN +EEEKVQMLYGHSERLAIAYG+L +
Sbjct: 879 HPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTT 938
Query: 781 TEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
EG+ +RITKNLRVC DCH+FCKL+S+ F RELV+RDANRFHHF+ GVCSCGD W
Sbjct: 939 PEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1229 bits (3180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/835 (68%), Positives = 692/835 (82%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
MYGKCGSVLDAE +FDK+S+R++FTWNAM+G YVSNGE L LE Y MR LG+S D++T
Sbjct: 1 MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
FP ++KAC +++DL CGA+IHGL +K G DS F+VNSLVA+YAKC D AR+LFDRM
Sbjct: 61 FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
+ DVV WNSIISAYS +G C EAL LF EM + G+VTN YTF AALQACEDSSF LGM
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
+IHAA +KSG+ L VYVANAL+AMY R GKM EAA + LE KD V+WNSMLTGF+QN
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300
LY +A++FF +LQ A KPDQV ++ + ASGRLG LLNGKE+HAYAIK GF S++ +GN
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDA 360
TL+DMYAKCCC++Y GR F M +D ISWTT AGYAQN C+L+ALEL R +Q+EG+D
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360
Query: 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFE 420
D +IGS+L+AC GL C+ + KEIHGY IR GLSD V+ N I+DVYG+CG IDY+ +FE
Sbjct: 361 DATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFE 420
Query: 421 SIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKK 480
SIE KDVVSWTSMIS YVHNGLAN+ALE+F M E +E D +TLVS LSA SLS LKK
Sbjct: 421 SIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKK 480
Query: 481 GKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGL 540
GKE++GFIIRKGF LEGS++++LVDMYARCG+++ A K+F C + ++LILWT+MI+A G+
Sbjct: 481 GKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGM 540
Query: 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE 600
HG G+ A++LF +M+ E PDHITFLALLYACSHSGL+NEGK FLEIM+C+YQL+PWPE
Sbjct: 541 HGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPE 600
Query: 601 HYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLEL 660
HY CLVDLLGR N LEEAYQ V+SMQ EPT EVWCALLGACR+HSNKE+GE+ A+KLLEL
Sbjct: 601 HYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLEL 660
Query: 661 DPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKS 720
D NPGNYVL+SNVFAA+ +WKDVE+VRMRM+GSGL K PG SWIE+GNKIH+F++RDK
Sbjct: 661 DLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKL 720
Query: 721 HSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKS 780
H E D+IY+KLA++TEKL+REGGYVAQT+FVLHNV EEEKVQMLYGHSERLAIAYG+L +
Sbjct: 721 HPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLAT 780
Query: 781 TEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
EG+ IR+TKNLRVC DCHSFC LVSR F REL+VRDA+RFHHF+ G+CSCGD+W
Sbjct: 781 AEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1228 bits (3176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/835 (69%), Positives = 697/835 (83%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
MYGKCG ++DAE+LFD + +T+FTWNAM+GAYV+NGEPL LE Y MRV GI +DA T
Sbjct: 123 MYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACT 182
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
FPC++KAC +LKD GA++HGL +K GY S F+ NS+V MY KC D ARQLFDRM
Sbjct: 183 FPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMP 242
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
EKEDVV WNS+ISAYS++GQ +EAL LF EMQ+ L N YTFVAALQACEDSSF GM
Sbjct: 243 EKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM 302
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
IHA +KS + V+VANALIAMYAR GKM EAA + Y +++ D++SWNSML+GFVQN
Sbjct: 303 FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 362
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300
LY +A+QF+ E++ AGQKPD V ++ ++AS R GN L+G ++HAYA+K G SDLQ+GN
Sbjct: 363 LYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGN 422
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDA 360
+L+DMYAK C + YM +F +M +D +SWTTIIAG+AQN H +ALELFR VQLEG+D
Sbjct: 423 SLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDL 482
Query: 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFE 420
DVM+I S+L+ACSGLK +S KEIH YIIRKGLSDLV+ N IVDVYG+CGN+DY+ +FE
Sbjct: 483 DVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFE 542
Query: 421 SIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKK 480
IE KDVVSWTSMIS YVHNGLANEALELF+LM E VE DSI+LVS LSAA+SLS LKK
Sbjct: 543 LIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKK 602
Query: 481 GKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGL 540
GKE++GF+IRKGF LEGS+AS+LVDMYARCG L+ + VFN ++ KDL+LWTSMINA G+
Sbjct: 603 GKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM 662
Query: 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE 600
HG G+ AIDLF +ME ES APDHI F+A+LYACSHSGL+NEG++FLE M+ +YQL+PWPE
Sbjct: 663 HGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPE 722
Query: 601 HYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLEL 660
HYACLVDLLGRANHLEEAYQFV+ M++EPTAEVWCALLGAC++HSNKELGEI A+KLLE+
Sbjct: 723 HYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEM 782
Query: 661 DPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKS 720
DP NPGNYVL+SNV++A R+WKDVE VRMRM+ SGLKK PG SWIE+GNK+H+F+ARDKS
Sbjct: 783 DPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKS 842
Query: 721 HSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKS 780
H +S EIY KL++ITEKL +EGGYVAQT+FVLHN +EEEKVQMLYGHSERLAIAYG+L +
Sbjct: 843 HPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTT 902
Query: 781 TEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
EG+ +RITKNLRVC DCH+FCKL+S+ F RELV+RDANRFHHF+ GVCSCGD W
Sbjct: 903 PEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa] gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1172 bits (3033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/787 (69%), Positives = 664/787 (84%)
Query: 49 MRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYD 108
MRVLG+ D+FTFPCV+KAC +++D+ GA+IHGL++KCGYDS F+ NSLV+MYAKC D
Sbjct: 1 MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60
Query: 109 FRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQ 168
AR+LFDRM E+ DVV WNSIISAYS +GQC+EALGLFREMQ+ G+ N YT VAALQ
Sbjct: 61 ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120
Query: 169 ACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVS 228
ACEDSSF+ LGMEIHAA +KS Q L VYVANAL+AM+ R GKM+ AA + +L+ KD+++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180
Query: 229 WNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAI 288
WNSM+ GF QN LY +A+QFF LQ A KPD+V ++ ++ASGRLG LLNGKE+HAYA+
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240
Query: 289 KQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALE 348
K S+L+IGNTL+DMY+KCCCV Y G VF +M +D ISWTT+IA YAQNNCH +AL+
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300
Query: 349 LFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGK 408
L R VQ +G+D D M+IGS L+ACSGL+C+S KE+HGY +++GLSDL++ N I+DVY
Sbjct: 301 LLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYAD 360
Query: 409 CGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSA 468
CGNI+Y+ +FESI+ KDVVSWTSMIS YVHNGLANEAL +FYLM E +VE DSITLVS
Sbjct: 361 CGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSI 420
Query: 469 LSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDL 528
LSAA+SLS L KGKE++GFI RKGF LEGS +SLVDMYA CG+L+ A KVF C ++K L
Sbjct: 421 LSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSL 480
Query: 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEI 588
+LWT+MINA G+HGRGK A++LF ME + PDHITFLALLYACSHSGLINEGK+ LE
Sbjct: 481 VLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLET 540
Query: 589 MRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKE 648
M+C YQL+PWPEHYACLVDLLGRANHLEEAY FV+SMQIEPTAEVWCA LGACR+HSNK+
Sbjct: 541 MKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKK 600
Query: 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIG 708
LGEI A+KLL+LDP +PG+YVLISNVFAAS +WKDVE+VRMRM+G GLKK PG SWIE+G
Sbjct: 601 LGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVG 660
Query: 709 NKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHS 768
NK+H+F+ RDKSH ES +IY+KLA+ITEKLE+EGGYV QT+ VLHNV +EEKVQMLYGHS
Sbjct: 661 NKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHS 720
Query: 769 ERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGV 828
ERLAIAYG++ ++EG+ IRITKNLRVCVDCH+FCKLVS+ F REL+VRDA+RFHHFE GV
Sbjct: 721 ERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGV 780
Query: 829 CSCGDYW 835
CSCGD+W
Sbjct: 781 CSCGDFW 787
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein At3g63370-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1133 bits (2931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/836 (62%), Positives = 665/836 (79%), Gaps = 1/836 (0%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
MYGKCGS+ DA ++FD++S+RT+F+WNA++GA+VS+G+ L +E Y MRVLG+++DA T
Sbjct: 88 MYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACT 147
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDR-M 119
FP V+KAC L + GA+IHG+ +KCGY F+ N+L+AMY KC D AR LFD M
Sbjct: 148 FPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIM 207
Query: 120 GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLG 179
EKED V WNSIISA+ A G CLEAL LFR MQ VG+ +N YTFVAALQ ED SF LG
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267
Query: 180 MEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQN 239
M IH A +KS VYVANALIAMYA+CG+M +A V + +D VSWN++L+G VQN
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327
Query: 240 DLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIG 299
+LY A+ +FR++Q +GQKPDQV +N ++ASGR GNLL GKE+HAYAI+ G S++QIG
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIG 387
Query: 300 NTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLD 359
NTL+DMYAKCCCV YMG F M +D ISWTTIIAGYAQN HL+A+ LFR VQ++G+D
Sbjct: 388 NTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMD 447
Query: 360 ADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVF 419
D M+IGSVL ACSGLK + +EIHGY+ ++ L+D+++ NAIV+VYG+ G+IDY+R F
Sbjct: 448 VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAF 507
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479
ESI SKD+VSWTSMI+ VHNGL EALELFY + + N++ DSI ++SALSA ++LS LK
Sbjct: 508 ESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLK 567
Query: 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG 539
KGKE++GF+IRKGF LEG +ASSLVDMYA CG ++ + K+F+ V+ +DLILWTSMINANG
Sbjct: 568 KGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANG 627
Query: 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599
+HG G AI LF KM ++ PDHITFLALLYACSHSGL+ EGK+F EIM+ YQL+PWP
Sbjct: 628 MHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWP 687
Query: 600 EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659
EHYAC+VDLL R+N LEEAY FVR+M I+P++E+WCALLGAC +HSNKELGE+ AK+LL+
Sbjct: 688 EHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQ 747
Query: 660 LDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDK 719
D N G Y LISN+FAA +W DVE+VR+RM+G+GLKK PG SWIE+ NKIH+F+ARDK
Sbjct: 748 SDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDK 807
Query: 720 SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLK 779
SH ++D+IY KLA+ T+ LE++GGY+AQT+FV HNV EEEK QMLYGHSERLA+ YG+L
Sbjct: 808 SHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLV 867
Query: 780 STEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+ +G+ IRITKNLR+C DCH+F K+ S + R LVVRDANRFHHFE G+CSCGD+W
Sbjct: 868 TPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g63370-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/836 (62%), Positives = 663/836 (79%), Gaps = 1/836 (0%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
MY KCGS+ DA ++FD++++RT+FTWNAM+GA+VS+G+ L +E Y MRVLG+++DA T
Sbjct: 88 MYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACT 147
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDR-M 119
FP V+KAC L + GA+IHG+ +KCG+ F+ N+L+AMY KC D AR LFD M
Sbjct: 148 FPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIM 207
Query: 120 GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLG 179
EKED V WNSIISA+ G+CLEAL LFR MQ VG+ +N YTFVAALQ ED SF LG
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267
Query: 180 MEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQN 239
M IH A +KS VYVANALIAMYA+CG+M +A V + +D VSWN++L+G VQN
Sbjct: 268 MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327
Query: 240 DLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIG 299
+LY A+ +FR++Q + QKPDQV +N ++ASGR GNLLNGKE+HAYAI+ G S++QIG
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIG 387
Query: 300 NTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLD 359
NTL+DMYAKCCCV +MG F M +D ISWTTIIAGYAQN CHL+A+ LFR VQ++G+D
Sbjct: 388 NTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMD 447
Query: 360 ADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVF 419
D M+IGSVL ACSGLK + +EIHGY+ ++ L+D+++ NAIV+VYG+ G+ DY+R F
Sbjct: 448 VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAF 507
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479
ESI SKD+VSWTSMI+ VHNGL EALELFY + + N++ DSI ++SALSA ++LS LK
Sbjct: 508 ESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLK 567
Query: 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG 539
KGKE++GF+IRKGF LEG +ASSLVDMYA CG ++ + K+F+ V+ +DLILWTSMINANG
Sbjct: 568 KGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANG 627
Query: 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599
+HG G AI LF KM E+ PDHITFLALLYACSHSGL+ EGK+F EIM+ YQL+PWP
Sbjct: 628 MHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWP 687
Query: 600 EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659
EHYAC+VDLL R+N LEEAYQFVRSM I+P++EVWCALLGAC +HSNKELGE+ AK+LL+
Sbjct: 688 EHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQ 747
Query: 660 LDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDK 719
D N G Y LISN+FAA +W DVE+VR+RM+G+GLKK PG SWIE+ NKIH+F+ARDK
Sbjct: 748 SDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDK 807
Query: 720 SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLK 779
SH ++D+IY KLA+ T+ L ++GGY+AQT+FV HNV EEEK QMLY HSERLA+ YG+L
Sbjct: 808 SHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLV 867
Query: 780 STEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+ +G+ IRITKNLR+C DCH+F K+ S + R LVVRDANRFHHFE G+CSCGD+W
Sbjct: 868 TPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/836 (62%), Positives = 651/836 (77%), Gaps = 1/836 (0%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
MYGKCGS DA ++FDK+S+RT+FTWNAM+GA VS G + +E Y MRVLG+S+DAFT
Sbjct: 91 MYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFT 150
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDR-M 119
FPCV+KAC K+ G +IHG+ +KCGY F+ N+L+AMYAKC D AR LFD +
Sbjct: 151 FPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGL 210
Query: 120 GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLG 179
EK+D V WNSIISA+ G+ LEAL LFR MQ VG+ +N YTFV+ALQACE +F +G
Sbjct: 211 MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG 270
Query: 180 MEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQN 239
IHA +KS VYV+NALIAMYA CG+M +A V + KD VSWN++L+G VQN
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330
Query: 240 DLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIG 299
D+Y A+ F+++Q +GQKPDQV +N ++ASGR NLL G E+HAYAIK G S++ IG
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIG 390
Query: 300 NTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLD 359
N+L+DMY KCCCV YMG F M +D ISWTTIIAGYAQN CHL AL L R VQLE +D
Sbjct: 391 NSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMD 450
Query: 360 ADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVF 419
D M+IGS+L+ACSGLK KEIHGY+++ GL+D++I NAIV+VYG+ +DY+R+VF
Sbjct: 451 VDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVF 510
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479
ESI SKD+VSWTSMI+ VHNGLA EALELF + E N+E D ITLVS L AA++LS LK
Sbjct: 511 ESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLK 570
Query: 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG 539
KGKE++GF+IRKGF LEG +A+SLVDMYARCG ++ A +FN V+ +DLILWTSMINANG
Sbjct: 571 KGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANG 630
Query: 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599
+HG GK AIDLF KM E+ PDHITFLALLYACSHSGL+ EGK+ EIM+ +Y+L+PWP
Sbjct: 631 MHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWP 690
Query: 600 EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659
EHYACLVDLL R+N LEEAY FVR+M IEP+AEVWCALLGACR+HSN +LGE+ AKKLL+
Sbjct: 691 EHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQ 750
Query: 660 LDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDK 719
L+ N GNYVL+SN FAA +W DVE+VR M+G+ LKK PG SWIE+ NKIH+F+ARDK
Sbjct: 751 LNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDK 810
Query: 720 SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLK 779
SH + + IY KLA+ T+ L+ +GGY AQT+ V H+V EEEK QMLYGHSERLA+ YG+L
Sbjct: 811 SHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLV 870
Query: 780 STEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+++G+ +RITKNLR+C DCH+F K+ S + R LVVRDA+RFHHFE G+CSCGD+W
Sbjct: 871 TSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370 | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/836 (59%), Positives = 645/836 (77%), Gaps = 1/836 (0%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
MYGKCGS+ DAE++FD++ RT F WN M+GAYVSNGEP L Y MRV G+ + +
Sbjct: 125 MYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSS 184
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
FP ++KACA L+D+ G+++H L++K GY ST FIVN+LV+MYAK D AR+LFD
Sbjct: 185 FPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 244
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
EK D VLWNSI+S+YS SG+ LE L LFREM G N+YT V+AL AC+ S+ LG
Sbjct: 245 EKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGK 304
Query: 181 EIHAATVKSG-QNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQN 239
EIHA+ +KS + ++YV NALIAMY RCGKM +A +L Q+ N D V+WNS++ G+VQN
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364
Query: 240 DLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIG 299
+Y +A++FF ++ AG K D+V + ++ASGRL NLL G ELHAY IK G+ S+LQ+G
Sbjct: 365 LMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVG 424
Query: 300 NTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLD 359
NTL+DMY+KC YMGR F +M +D ISWTT+IAGYAQN+CH++ALELFR V + ++
Sbjct: 425 NTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME 484
Query: 360 ADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVF 419
D MI+GS+L A S LK M KEIH +I+RKGL D VI N +VDVYGKC N+ Y+ VF
Sbjct: 485 IDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVF 544
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479
ESI+ KDVVSWTSMISS NG +EA+ELF M E + +DS+ L+ LSAA+SLS L
Sbjct: 545 ESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALN 604
Query: 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG 539
KG+E++ +++RKGF LEGS+A ++VDMYA CG L A VF+ ++ K L+ +TSMINA G
Sbjct: 605 KGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYG 664
Query: 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599
+HG GK A++LF KM E+ +PDHI+FLALLYACSH+GL++EG+ FL+IM +Y+L+PWP
Sbjct: 665 MHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWP 724
Query: 600 EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659
EHY CLVD+LGRAN + EA++FV+ M+ EPTAEVWCALL ACR HS KE+GEI A++LLE
Sbjct: 725 EHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLE 784
Query: 660 LDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDK 719
L+P NPGN VL+SNVFA +W DVE+VR +M+ SG++K PG SWIE+ K+H F ARDK
Sbjct: 785 LEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDK 844
Query: 720 SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLK 779
SH ES EIY+KL+E+T KLERE GYVA T+FVLHNV+E EKVQML+GHSER+AIAYG+L+
Sbjct: 845 SHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLR 904
Query: 780 STEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+ + + +RITKNLRVC DCH+FCKLVS+LF R++V+RDANRFHHFE+G+CSCGD W
Sbjct: 905 TPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein At3g63370-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/838 (53%), Positives = 595/838 (71%), Gaps = 4/838 (0%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVL---GISVD 57
MYGKCG V DA LFD +S RTVF+WNA++GAY+S+G L Y MR+ G++ D
Sbjct: 104 MYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPD 163
Query: 58 AFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFD 117
T V+KA + D CG ++HGL +K G D + F+ N+L+AMYAKC A ++F+
Sbjct: 164 GCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFE 223
Query: 118 RMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFET 177
M + DV WNS+IS +G L+AL LFR MQR L N+YT V LQ C + +
Sbjct: 224 LMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLN 283
Query: 178 LGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFV 237
LG E+HAA +KSG + + NAL+ MY +CG++ A V +++ KD +SWNSML+ +V
Sbjct: 284 LGRELHAALLKSGSEVNIQ-CNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYV 342
Query: 238 QNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQ 297
QN LY +A++F E+ G +PD C V+ SA G LG LLNGKE+HAYAIKQ SD Q
Sbjct: 343 QNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQ 402
Query: 298 IGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEG 357
+GNTLMDMY KC + Y VF +M +D ISWTTII YAQ++ H++ALE+FR Q EG
Sbjct: 403 VGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEG 462
Query: 358 LDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRN 417
+ D M+IGS+L ACSGL+ + K++H Y IR GL DLV+ N I+D+YG+CG + +S
Sbjct: 463 IKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLK 522
Query: 418 VFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477
+FE++E KD+V+WTSMI+ Y ++GL NEAL LF M +V+ DS+ LVS L A LS
Sbjct: 523 MFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSS 582
Query: 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINA 537
L KGKE++GF+IR+ F++E ++ SSLVDMY+ CG+L A KVFN V+ KD++LWT+MINA
Sbjct: 583 LAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINA 642
Query: 538 NGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP 597
G+HG GK AIDLF +M PDH++FLALLYACSHS L+NEGK +L++M Y+L+P
Sbjct: 643 TGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEP 702
Query: 598 WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKL 657
W EHYAC+VDLLGR+ EEAY+F++SM ++P + VWC+LLGACRVH N EL + A +L
Sbjct: 703 WQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRL 762
Query: 658 LELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIAR 717
LEL+P NPGNYVL+SNVFA KW + ++VR R+ GL+K P SWIEIGN +H+F R
Sbjct: 763 LELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTR 822
Query: 718 DKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGV 777
D SH +++ I KLAEITE+L +EGGY T+ VLH+V EEEKV +L+ HSERLAI++G+
Sbjct: 823 DNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGL 882
Query: 778 LKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+ + G +RI KNLRVC DCH F KLVS+LF R++VVRDANRFHHF G CSCGD+W
Sbjct: 883 INTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/773 (58%), Positives = 588/773 (76%), Gaps = 2/773 (0%)
Query: 5 CGS--VLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFP 62
CG L E++FD++ RT F WNA++GAYVSNGEP L Y MRV G+ +D ++FP
Sbjct: 107 CGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFP 166
Query: 63 CVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEK 122
++KAC L+D+ G ++H +++K G++ST FIVN+LV+MYAK A++LFD EK
Sbjct: 167 VLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEK 226
Query: 123 EDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEI 182
D VLWNSI+S+YS SG+ LE L LFREMQ G +N+YT V+AL ACE S+ LG EI
Sbjct: 227 GDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEI 286
Query: 183 HAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLY 242
HAA +KS + +VYV NALIAMYARCGKM EA +L + N D V+WNS++ G+VQN +Y
Sbjct: 287 HAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMY 346
Query: 243 CKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTL 302
+A+QFF ++ AG KPD+V + ++ASGRL NLL G ELHAY IK G+ S+L +GNTL
Sbjct: 347 KEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTL 406
Query: 303 MDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADV 362
+DMY+KC YMGR F M +D ISWTTIIAGYA N+CH++AL+LFR V + ++ D
Sbjct: 407 IDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDE 466
Query: 363 MIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESI 422
M++GS+L ACS LK M KEIH +I+RKGL D VI N +VDVYGKC N+ Y+ VFESI
Sbjct: 467 MMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNELVDVYGKCRNMGYASRVFESI 526
Query: 423 ESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGK 482
+ KDVVSWTSMISS NG NEA+ELF M E + +DS+ L+ LSAA+SLS LKKG+
Sbjct: 527 KGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGR 586
Query: 483 ELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHG 542
E++G+++RKGF LEGS+A ++VDMYA CG L A VF+ ++ K L+ +TSMINA G+HG
Sbjct: 587 EIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHG 646
Query: 543 RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHY 602
GK +++LF KM E+ +PDHI+FLALLYACSH+GL++EG++FL+IM +Y+L+PWPEHY
Sbjct: 647 CGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHY 706
Query: 603 ACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDP 662
CLVD+LGRAN + EA++FV+ M+ EPT EVWCALL ACR HS KE+GEI A++LLEL+P
Sbjct: 707 VCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQRLLELEP 766
Query: 663 GNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHS 722
NPGN VL+SNVFA +W DVE+VR +M+ SG++K PG SWIE+ K+H F ARDKSH
Sbjct: 767 KNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHP 826
Query: 723 ESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAY 775
E+ EIY+KL+E+T KLERE GY+A T+F+LHNV+E EKVQML+GHSERLAIAY
Sbjct: 827 ETKEIYEKLSEVTRKLERESGYLADTKFILHNVDEGEKVQMLHGHSERLAIAY 879
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | ||||||
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.996 | 0.857 | 0.386 | 6.8e-159 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.986 | 0.925 | 0.374 | 3.7e-158 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.979 | 0.927 | 0.371 | 6.3e-156 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.850 | 0.717 | 0.368 | 4.9e-155 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.997 | 0.782 | 0.357 | 1.8e-151 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.923 | 0.885 | 0.378 | 2e-150 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.996 | 0.887 | 0.348 | 4.3e-148 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.609 | 0.598 | 0.399 | 1.2e-147 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.908 | 0.922 | 0.374 | 4.3e-141 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.996 | 0.836 | 0.346 | 3e-140 |
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 327/845 (38%), Positives = 494/845 (58%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRM-RVLGISVDAF 59
MY CGS D+ +FD + + +F WNA++ +Y N VLET+ M + D F
Sbjct: 129 MYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHF 188
Query: 60 TFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM 119
T+PCVIKACA + D+ G +HGLV+K G F+ N+LV+ Y A QLFD M
Sbjct: 189 TYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM 248
Query: 120 GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVG----LVTNAYTFVAALQACEDSSF 175
E+ ++V WNS+I +S +G E+ L EM + + T V L C
Sbjct: 249 PER-NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE 307
Query: 176 ETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTG 235
LG +H VK + ++ + NAL+ MY++CG +T A + NK+ VSWN+M+ G
Sbjct: 308 IGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGG 367
Query: 236 F-VQNDLYCKAMQFFRELQGAGQ--KPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGF 292
F + D + R++ G+ K D+V +NAV L + KELH Y++KQ F
Sbjct: 368 FSAEGDTH-GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 426
Query: 293 VSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRT 352
V + + N + YAKC ++Y RVF+ + ++ SW +I G+AQ+N +L+
Sbjct: 427 VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 486
Query: 353 VQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGN 411
+++ GL D + S+L ACS LK + KE+HG+IIR L DL + +++ +Y CG
Sbjct: 487 MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE 546
Query: 412 IDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITXXXXXXX 471
+ + +F+++E K +VSW ++I+ Y+ NG + AL +F M ++ I+
Sbjct: 547 LCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA 606
Query: 472 XXXXXILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILW 531
L+ G+E + + ++ + +A SL+DMYA+ G++ ++KVFN ++ K W
Sbjct: 607 CSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 666
Query: 532 TSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRC 591
+MI G+HG K AI LF +M+ PD +TFL +L AC+HSGLI+EG ++L+ M+
Sbjct: 667 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 726
Query: 592 DYQLDPWPEHYACLVDLLGRANHLEEAYQFV-RSMQIEPTAEVWCALLGACRVHSNKELG 650
+ L P +HYAC++D+LGRA L++A + V M E +W +LL +CR+H N E+G
Sbjct: 727 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMG 786
Query: 651 EIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNK 710
E VA KL EL+P P NYVL+SN++A KW+DV +VR RM L+K G SWIE+ K
Sbjct: 787 EKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRK 846
Query: 711 IHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSER 770
+ SF+ ++ +EI K L I E + GY T V H++ EEEK++ L GHSE+
Sbjct: 847 VFSFVVGERFLDGFEEI-KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEK 905
Query: 771 LAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCS 830
LA+ YG++K++EG+ IR+ KNLR+CVDCH+ KL+S++ RE+VVRD RFHHF+ GVCS
Sbjct: 906 LALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCS 965
Query: 831 CGDYW 835
CGDYW
Sbjct: 966 CGDYW 970
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 318/849 (37%), Positives = 507/849 (59%)
Query: 7 SVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIK 66
+V A +F S R+ W +L + V + + TY M VLGI D + FP ++K
Sbjct: 47 AVSGAPSIFISQS-RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLK 105
Query: 67 ACAMLKDLDCGAKIHGLVLKCGY--DSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKED 124
A A L+D++ G +IH V K GY DS + N+LV +Y KC DF ++FDR+ E+
Sbjct: 106 AVADLQDMELGKQIHAHVYKFGYGVDSVT-VANTLVNLYRKCGDFGAVYKVFDRISERNQ 164
Query: 125 VVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFET---LGME 181
V WNS+IS+ + + AL FR M + +++T V+ + AC + +G +
Sbjct: 165 VS-WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQ 223
Query: 182 IHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDL 241
+HA ++ G+ L ++ N L+AMY + GK+ + +L +D V+WN++L+ QN+
Sbjct: 224 VHAYGLRKGE-LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 282
Query: 242 YCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQ-IGN 300
+A+++ RE+ G +PD+ + + A L L GKELHAYA+K G + + +G+
Sbjct: 283 LLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGS 342
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLE-GLD 359
L+DMY C V RVF M + W +IAGY+QN +AL LF ++ GL
Sbjct: 343 ALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL 402
Query: 360 ADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNV 418
A+ + V+ AC S+ + IHG+++++GL D + N ++D+Y + G ID + +
Sbjct: 403 ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 462
Query: 419 FESIESKDVVSWTSMISSYVHNGLANEALELFYLM-----------NEANVESDSITXXX 467
F +E +D+V+W +MI+ YV + +AL L + M + +++ +SIT
Sbjct: 463 FGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMT 522
Query: 468 XXXXXXXXXILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKD 527
L KGKE++ + I+ + +V S+LVDMYA+CG L ++ KVF+ + K+
Sbjct: 523 ILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN 582
Query: 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLE 587
+I W +I A G+HG G+ AIDL M + P+ +TF+++ ACSHSG+++EG +
Sbjct: 583 VITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFY 642
Query: 588 IMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIE-PTAEVWCALLGACRVHSN 646
+M+ DY ++P +HYAC+VDLLGRA ++EAYQ + M + A W +LLGA R+H+N
Sbjct: 643 VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNN 702
Query: 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIE 706
E+GEI A+ L++L+P +YVL++N+++++ W +VR M+ G++K PG SWIE
Sbjct: 703 LEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Query: 707 IGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYG 766
G+++H F+A D SH +S+++ L + E++ +EG YV T VLHNVEE+EK +L G
Sbjct: 763 HGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG-YVPDTSCVLHNVEEDEKEILLCG 821
Query: 767 HSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEA 826
HSE+LAIA+G+L ++ G++IR+ KNLRVC DCH K +S++ RE+++RD RFH F+
Sbjct: 822 HSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKN 881
Query: 827 GVCSCGDYW 835
G CSCGDYW
Sbjct: 882 GTCSCGDYW 890
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
Identities = 307/826 (37%), Positives = 502/826 (60%)
Query: 14 LFDKVSQ-RTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLK 72
+F +VS + V+ WN+++ A+ NG LE Y ++R +S D +TFP VIKACA L
Sbjct: 61 VFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLF 120
Query: 73 DLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSII 132
D + G ++ +L G++S F+ N+LV MY++ +ARQ+FD M + D+V WNS+I
Sbjct: 121 DAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLI 179
Query: 133 SAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQN 192
S YS+ G EAL ++ E++ +V +++T + L A + G +H +KSG N
Sbjct: 180 SGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVN 239
Query: 193 LQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFREL 252
V V N L+AMY + + T+A V +++ +DSVS+N+M+ G+++ ++ ++++ F L
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF--L 297
Query: 253 QGAGQ-KPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCC 311
+ Q KPD + + + A G L +L K ++ Y +K GFV + + N L+D+YAKC
Sbjct: 298 ENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGD 357
Query: 312 VNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA 371
+ VF M +D +SW +II+GY Q+ ++A++LF+ + + AD + ++
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISV 417
Query: 372 CSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSW 430
+ L + K +H I+ G+ DL + NA++D+Y KCG + S +F S+ + D V+W
Sbjct: 418 STRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTW 477
Query: 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITXXXXXXXXXXXXILKKGKELNGFIIR 490
++IS+ V G L++ M ++ V D T + GKE++ ++R
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537
Query: 491 KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDL 550
G+ E + ++L++MY++CG L+ +++VF + +D++ WT MI A G++G G+ A++
Sbjct: 538 FGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALET 597
Query: 551 FYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLG 610
F ME PD + F+A++YACSHSGL++EG E M+ Y++DP EHYAC+VDLL
Sbjct: 598 FADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLS 657
Query: 611 RANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670
R+ + +A +F+++M I+P A +W ++L ACR + E E V+++++EL+P +PG +L
Sbjct: 658 RSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSIL 717
Query: 671 ISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKK 730
SN +AA RKW V +R ++ + K PG SWIE+G +H F + D S +S+ IYK
Sbjct: 718 ASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKS 777
Query: 731 LAEITEKLEREGGYVAQTQFVLHNVEEEE-KVQMLYGHSERLAIAYGVLKSTEGSLIRIT 789
L EI L + GY+ + V N+EEEE K +++ GHSERLAIA+G+L + G+ +++
Sbjct: 778 L-EILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVM 836
Query: 790 KNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
KNLRVC DCH KL+S++ GRE++VRDANRFH F+ G CSC D W
Sbjct: 837 KNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1322 (470.4 bits), Expect = 4.9e-155, Sum P(2) = 4.9e-155
Identities = 263/714 (36%), Positives = 419/714 (58%)
Query: 124 DVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIH 183
+++ N +S Y SGQ L F +M + + TF+ L LG ++H
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338
Query: 184 AATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYC 243
+K G +L + V+N+LI MY + K A V + +D +SWNS++ G QN L
Sbjct: 339 CMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEV 398
Query: 244 KAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLN-GKELHAYAIKQGFVSDLQIGNTL 302
+A+ F +L G KPDQ + + A+ L L+ K++H +AIK VSD + L
Sbjct: 399 EAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTAL 458
Query: 303 MDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADV 362
+D Y++ C+ + ++ D ++W ++AGY Q++ K L+LF + +G +D
Sbjct: 459 IDAYSRNRCMKE-AEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDD 517
Query: 363 MIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNVFES 421
+ +V C L ++Q K++H Y I+ G DL + + I+D+Y KCG++ ++ F+S
Sbjct: 518 FTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDS 577
Query: 422 IESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITXXXXXXXXXXXXILKKG 481
I D V+WT+MIS + NG A +F M V D T L++G
Sbjct: 578 IPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 637
Query: 482 KELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLH 541
++++ ++ + V +SLVDMYA+CG++D A +F ++ ++ W +M+ H
Sbjct: 638 RQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQH 697
Query: 542 GRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEH 601
G GK + LF +M++ PD +TF+ +L ACSHSGL++E K + M DY + P EH
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEH 757
Query: 602 YACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELD 661
Y+CL D LGRA +++A + SM +E +A ++ LL ACRV + E G+ VA KLLEL+
Sbjct: 758 YSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELE 817
Query: 662 PGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSH 721
P + YVL+SN++AA+ KW +++ R M+G +KK PG SWIE+ NKIH F+ D+S+
Sbjct: 818 PLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSN 877
Query: 722 SESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKST 781
+++ IY+K+ ++ +++EG YV +T F L +VEEEEK + LY HSE+LA+A+G+L +
Sbjct: 878 RQTELIYRKVKDMIRDIKQEG-YVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTP 936
Query: 782 EGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+ IR+ KNLRVC DCH+ K +++++ RE+V+RDANRFH F+ G+CSCGDYW
Sbjct: 937 PSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1478 (525.3 bits), Expect = 1.8e-151, P = 1.8e-151
Identities = 299/836 (35%), Positives = 478/836 (57%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
+Y + G V A ++FD + + +W AM+ N + + M VLGI +
Sbjct: 231 LYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 290
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
F V+ AC ++ L+ G ++HGLVLK G+ S ++ N+LV++Y + A +F M
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
++ D V +N++I+ S G +A+ LF+ M GL ++ T + + AC G
Sbjct: 351 QR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
++HA T K G + AL+ +YA+C + A + E ++ V WN ML + D
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300
+ + FR++Q P+Q + + RLG+L G+++H+ IK F + + +
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDA 360
L+DMYAK ++ + + +D +SWTT+IAGY Q N KAL FR + G+ +
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589
Query: 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNVF 419
D + + + + AC+GL+ + + ++IH G S DL NA+V +Y +CG I+ S F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITXXXXXXXXXXXXILK 479
E E+ D ++W +++S + +G EAL +F MN +++++ T +K
Sbjct: 650 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 709
Query: 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG 539
+GK+++ I + G++ E V ++L+ MYA+CG++ A K F V TK+ + W ++INA
Sbjct: 710 QGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769
Query: 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599
HG G A+D F +M + P+H+T + +L ACSH GL+++G + E M +Y L P P
Sbjct: 770 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 829
Query: 600 EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659
EHY C+VD+L RA L A +F++ M I+P A VW LL AC VH N E+GE A LLE
Sbjct: 830 EHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 889
Query: 660 LDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDK 719
L+P + YVL+SN++A S+KW + R +M+ G+KK PG SWIE+ N IHSF D+
Sbjct: 890 LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949
Query: 720 SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLK 779
+H +DEI++ ++T++ E GYV +L+ ++ E+K +++ HSE+LAI++G+L
Sbjct: 950 NHPLADEIHEYFQDLTKRAS-EIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLS 1008
Query: 780 STEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
I + KNLRVC DCH++ K VS++ RE++VRDA RFHHFE G CSC DYW
Sbjct: 1009 LPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
Identities = 299/789 (37%), Positives = 478/789 (60%)
Query: 56 VDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQL 115
+D T V++ CA K L G ++ + G+ + + L MY C D ++A ++
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 116 FDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSF 175
FD + + E + WN +++ + SG ++GLF++M G+ ++YTF +C SF
Sbjct: 152 FDEV-KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF-----SCVSKSF 205
Query: 176 ETL-----GMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWN 230
+L G ++H +KSG + V N+L+A Y + ++ A V ++ +D +SWN
Sbjct: 206 SSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWN 265
Query: 231 SMLTGFVQNDLYCKAMQFFRELQGAGQKPD--QVCTVNAVSASGRLGNLLNGKELHAYAI 288
S++ G+V N L K + F ++ +G + D + +V A A RL +L G+ +H+ +
Sbjct: 266 SIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL--GRAVHSIGV 323
Query: 289 KQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALE 348
K F + + NTL+DMY+KC ++ VF +M+ + +S+T++IAGYA+ +A++
Sbjct: 324 KACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVK 383
Query: 349 LFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYG 407
LF ++ EG+ DV + +VL C+ + + + K +H +I L D+ + NA++D+Y
Sbjct: 384 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYA 443
Query: 408 KCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELF-YLMNEANVESDSITXX 466
KCG++ + VF + KD++SW ++I Y N ANEAL LF L+ E D T
Sbjct: 444 KCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVA 503
Query: 467 XXXXXXXXXXILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK 526
KG+E++G+I+R G+ + VA+SLVDMYA+CGAL +A+ +F+ + +K
Sbjct: 504 CVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASK 563
Query: 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFL 586
DL+ WT MI G+HG GK AI LF +M D I+F++LLYACSHSGL++EG +F
Sbjct: 564 DLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFF 623
Query: 587 EIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSN 646
IMR + +++P EHYAC+VD+L R L +AY+F+ +M I P A +W ALL CR+H +
Sbjct: 624 NIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHD 683
Query: 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIE 706
+L E VA+K+ EL+P N G YVL++N++A + KW+ V+++R R+ GL+K PG SWIE
Sbjct: 684 VKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743
Query: 707 IGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYG 766
I +++ F+A D S+ E++ I L ++ ++ EG Y T++ L + EE EK + L G
Sbjct: 744 IKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEG-YSPLTKYALIDAEEMEKEEALCG 802
Query: 767 HSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEA 826
HSE+LA+A G++ S G +IR+TKNLRVC DCH K +S+L RE+V+RD+NRFH F+
Sbjct: 803 HSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862
Query: 827 GVCSCGDYW 835
G CSC +W
Sbjct: 863 GHCSCRGFW 871
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
Identities = 292/838 (34%), Positives = 476/838 (56%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
+YG G V + ++F+++ R V +W +++ Y GEP V++ Y MR G+ + +
Sbjct: 103 LYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENS 162
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
VI +C +LKD G +I G V+K G +S + NSL++M + A +FD+M
Sbjct: 163 MSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMS 222
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
E+ D + WNSI +AY+ +G E+ +F M+R N+ T L + G
Sbjct: 223 ER-DTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGR 281
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
IH VK G + V V N L+ MYA G+ EA V Q+ KD +SWNS++ FV +
Sbjct: 282 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDG 341
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300
A+ + +G+ + V +A++A G+ LH + G + IGN
Sbjct: 342 RSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGN 401
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDA 360
L+ MY K ++ RV QM +D ++W +I GYA++ KAL F+T+++EG+ +
Sbjct: 402 ALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSS 461
Query: 361 DVMIIGSVLMAC--SGLKCMSQTKEIHGYIIRKGL-SDLVILNAIVDVYGKCGNIDYSRN 417
+ + + SVL AC G + + K +H YI+ G SD + N+++ +Y KCG++ S++
Sbjct: 462 NYITVVSVLSACLLPG-DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQD 520
Query: 418 VFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITXXXXXXXXXXXXI 477
+F ++++++++W +M+++ H+G E L+L M V D + +
Sbjct: 521 LFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAV 580
Query: 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINA 537
L++G++L+G ++ GF + + ++ DMY++CG + K+ + L W +I+A
Sbjct: 581 LEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISA 640
Query: 538 NGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP 597
G HG + F++M P H+TF++LL ACSH GL+++G + +++ D+ L+P
Sbjct: 641 LGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEP 700
Query: 598 WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKL 657
EH C++DLLGR+ L EA F+ M ++P VW +LL +C++H N + G A+ L
Sbjct: 701 AIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENL 760
Query: 658 LELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIAR 717
+L+P + YVL SN+FA + +W+DVE VR +M +KK SW+++ +K+ SF
Sbjct: 761 SKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIG 820
Query: 718 DKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGV 777
D++H ++ EIY KL +I +KL +E GYVA T L + +EE+K L+ HSERLA+AY +
Sbjct: 821 DRTHPQTMEIYAKLEDI-KKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYAL 879
Query: 778 LKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+ + EGS +RI KNLR+C DCHS K VSR+ GR +V+RD RFHHFE G+CSC DYW
Sbjct: 880 MSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 209/523 (39%), Positives = 325/523 (62%)
Query: 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIH 385
D ++W+ I+GYAQ +AL + R + G+ + + + SVL C+ + + KEIH
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388
Query: 386 GYII------RK-GLSDL-VILNAIVDVYGKCGNIDYSRNVFESIESK--DVVSWTSMIS 435
Y I RK G D +++N ++D+Y KC +D +R +F+S+ K DVV+WT MI
Sbjct: 389 CYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIG 448
Query: 436 SYVHNGLANEALELFYLMNEANVES--DSITXXXXXXXXXXXXILKKGKELNGFIIRKGF 493
Y +G AN+ALEL M E + ++ ++ T L+ GK+++ + +R
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQ 508
Query: 494 N-LEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFY 552
N + V++ L+DMYA+CG++ A VF+ + K+ + WTS++ G+HG G+ A+ +F
Sbjct: 509 NAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFD 568
Query: 553 KMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA 612
+M F D +T L +LYACSHSG+I++G ++ M+ + + P PEHYACLVDLLGRA
Sbjct: 569 EMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRA 628
Query: 613 NHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672
L A + + M +EP VW A L CR+H ELGE A+K+ EL + G+Y L+S
Sbjct: 629 GRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLS 688
Query: 673 NVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLA 732
N++A + +WKDV ++R MR G+KK PG SW+E +F DK+H + EIY+ L
Sbjct: 689 NLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLL 748
Query: 733 EITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKSTEGSLIRITKNL 792
+ +++ ++ GYV +T F LH+V++EEK +L+ HSE+LA+AYG+L + +G+ IRITKNL
Sbjct: 749 DHMQRI-KDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNL 807
Query: 793 RVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
RVC DCH+ +SR+ ++++RD++RFHHF+ G CSC YW
Sbjct: 808 RVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
Identities = 291/777 (37%), Positives = 459/777 (59%)
Query: 64 VIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKE 123
+ + C L+ C +H ++ I LV +Y + AR FD + +
Sbjct: 60 LFRYCTNLQSAKC---LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHI-QNR 115
Query: 124 DVVLWNSIISAYSASGQCLEALGLFRE-MQRVGLVTNAYTFVAALQACEDSSFETLGMEI 182
DV WN +IS Y +G E + F M GL + TF + L+AC + + G +I
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR-TVID--GNKI 172
Query: 183 HAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLY-QLENKDSVSWNSMLTGFVQNDL 241
H +K G VYVA +LI +Y+R K A +L+ ++ +D SWN+M++G+ Q+
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYSRY-KAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231
Query: 242 YCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNT 301
+A+ L+ D V V+ +SA G+ G +H+Y+IK G S+L + N
Sbjct: 232 AKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNK 287
Query: 302 LMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDAD 361
L+D+YA+ + +VF +M +D ISW +II Y N L+A+ LF+ ++L + D
Sbjct: 288 LIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPD 347
Query: 362 VMIIGSVLMACSGLKCMSQTKEIHGYIIRKG--LSDLVILNAIVDVYGKCGNIDYSRNVF 419
+ + S+ S L + + + G+ +RKG L D+ I NA+V +Y K G +D +R VF
Sbjct: 348 CLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVF 407
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNE-ANVESDSITXXXXXXXXXXXXIL 478
+ + DV+SW ++IS Y NG A+EA+E++ +M E + ++ T L
Sbjct: 408 NWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGAL 467
Query: 479 KKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINAN 538
++G +L+G +++ G L+ V +SL DMY +CG L+ A +F + + + W ++I +
Sbjct: 468 RQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACH 527
Query: 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW 598
G HG G+ A+ LF +M E PDHITF+ LL ACSHSGL++EG+ E+M+ DY + P
Sbjct: 528 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPS 587
Query: 599 PEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLL 658
+HY C+VD+ GRA LE A +F++SM ++P A +W ALL ACRVH N +LG+I ++ L
Sbjct: 588 LKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLF 647
Query: 659 ELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARD 718
E++P + G +VL+SN++A++ KW+ V+++R G GL+KTPG S +E+ NK+ F +
Sbjct: 648 EVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGN 707
Query: 719 KSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVL 778
++H +E+Y++L + KL+ G YV +FVL +VE++EK +L HSERLAIA+ ++
Sbjct: 708 QTHPMYEEMYRELTALQAKLKMIG-YVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALI 766
Query: 779 KSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
+ + IRI KNLRVC DCHS K +S++ RE++VRD+NRFHHF+ GVCSCGDYW
Sbjct: 767 ATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
Identities = 295/851 (34%), Positives = 480/851 (56%)
Query: 1 MYGKC-GSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAF 59
MY KC GSV A F + + +WN+++ Y G+ +S M+ G +
Sbjct: 148 MYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEY 207
Query: 60 TFPCVIK-ACAMLK-DLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFD 117
TF ++ AC++ + D+ +I + K G + F+ + LV+ +AK AR++F+
Sbjct: 208 TFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFN 267
Query: 118 RMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSF-E 176
+M E + V N ++ EA LF +M + + + ++V L + + S E
Sbjct: 268 QM-ETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM-IDVSPESYVILLSSFPEYSLAE 325
Query: 177 TLGM----EIHAATVKSGQ-NLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNS 231
+G+ E+H + +G + V + N L+ MYA+CG + +A V Y + +KDSVSWNS
Sbjct: 326 EVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNS 385
Query: 232 MLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQG 291
M+TG QN + +A++ ++ ++ P ++++S+ L G+++H ++K G
Sbjct: 386 MITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLG 445
Query: 292 FVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHL-KALELF 350
++ + N LM +YA+ +N ++F M D +SW +II A++ L +A+ F
Sbjct: 446 IDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCF 505
Query: 351 RTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVIL-NAIVDVYGKC 409
Q G + + SVL A S L K+IHG ++ ++D NA++ YGKC
Sbjct: 506 LNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKC 565
Query: 410 GNIDYSRNVFESI-ESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITXXXX 468
G +D +F + E +D V+W SMIS Y+HN L +AL+L + M + DS
Sbjct: 566 GEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATV 625
Query: 469 XXXXXXXXILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDL 528
L++G E++ +R + V S+LVDMY++CG LD A + FN + ++
Sbjct: 626 LSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNS 685
Query: 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLE 587
W SMI+ HG+G+ A+ LF M+ + P DH+TF+ +L ACSH+GL+ EG K E
Sbjct: 686 YSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFE 745
Query: 588 IMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGAC-RVHSN 646
M Y L P EH++C+ D+LGRA L++ F+ M ++P +W +LGAC R +
Sbjct: 746 SMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGR 805
Query: 647 K-ELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWI 705
K ELG+ A+ L +L+P N NYVL+ N++AA +W+D+ + R +M+ + +KK G SW+
Sbjct: 806 KAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWV 865
Query: 706 EIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLY 765
+ + +H F+A DKSH ++D IYKKL E+ K+ R+ GYV QT F L+++E+E K ++L
Sbjct: 866 TMKDGVHMFVAGDKSHPDADVIYKKLKELNRKM-RDAGYVPQTGFALYDLEQENKEEILS 924
Query: 766 GHSERLAIAYGVLKSTEGSL-IRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHF 824
HSE+LA+A+ + +L IRI KNLRVC DCHS K +S++ GR++++RD+NRFHHF
Sbjct: 925 YHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHF 984
Query: 825 EAGVCSCGDYW 835
+ G CSC D+W
Sbjct: 985 QDGACSCSDFW 995
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M1V3 | PP296_ARATH | No assigned EC number | 0.5968 | 1.0 | 0.8697 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 835 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-153 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-114 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-52 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-49 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-40 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 3e-24 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 592 bits (1527), Expect = 0.0
Identities = 288/810 (35%), Positives = 463/810 (57%), Gaps = 10/810 (1%)
Query: 27 NAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLK 86
N+ L A S+G+ + L+ M+ L + VD + + + C + ++ G+++ L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 87 CGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALG 146
+ N++++M+ + + A +F +M E+ D+ WN ++ Y+ +G EAL
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALC 173
Query: 147 LFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYA 206
L+ M G+ + YTF L+ C G E+HA V+ G L V V NALI MY
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 207 RCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVN 266
+CG + A V ++ +D +SWN+M++G+ +N + ++ F ++ PD + +
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 267 AVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQD 326
+SA LG+ G+E+H Y +K GF D+ + N+L+ MY +VF +M +D
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 327 FISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHG 386
+SWT +I+GY +N KALE + ++ + + D + I SVL AC+ L + ++H
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 387 YIIRKGLSDLVIL-NAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANE 445
RKGL V++ NA++++Y KC ID + VF +I KDV+SWTS+I+ N E
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473
Query: 446 ALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505
AL F M ++ +S+TL++ALSA + + L GKE++ ++R G +G + ++L+D
Sbjct: 474 ALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532
Query: 506 MYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT 565
+Y RCG ++ A FN KD++ W ++ HG+G +A++LF +M PD +T
Sbjct: 533 LYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625
F++LL ACS SG++ +G ++ M Y + P +HYAC+VDLLGRA L EAY F+ M
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 626 QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685
I P VW ALL ACR+H + ELGE+ A+ + ELDP + G Y+L+ N++A + KW +V
Sbjct: 652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711
Query: 686 QVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYV 745
+VR MR +GL PG SW+E+ K+H+F+ D+SH + EI L EK++ G
Sbjct: 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG--- 768
Query: 746 AQTQFVLHNVEEEE--KVQMLYGHSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCK 803
+++E E K + GHSERLAIA+G++ + G I +TKNL +C +CH+ K
Sbjct: 769 -LAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK 827
Query: 804 LVSRLFGRELVVRDANRFHHFEAGVCSCGD 833
+S++ RE+ VRD +FHHF+ G CSCGD
Sbjct: 828 FISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 463 bits (1193), Expect = e-153
Identities = 217/597 (36%), Positives = 358/597 (59%), Gaps = 5/597 (0%)
Query: 242 YCKAMQFFRELQGAGQKPDQVCTVNA-VSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300
+ +A++ F L+ T +A V A L ++ K ++ + GF D + N
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDA 360
++ M+ KC + R+F +M ++ SW TII G + +A LFR + +G DA
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222
Query: 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILN-AIVDVYGKCGNIDYSRNVF 419
+ +L A +GL +++H +++ G+ ++ A++D+Y KCG+I+ +R VF
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479
+ + K V+W SM++ Y +G + EAL L+Y M ++ V D T + S L++L+
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG 539
K+ + +IR GF L+ ++LVD+Y++ G ++ A VF+ + K+LI W ++I G
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402
Query: 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599
HGRG A+++F +M AE AP+H+TFLA+L AC +SGL +G + + M ++++ P
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 600 EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659
HYAC+++LLGR L+EAY +R +PT +W ALL ACR+H N ELG + A+KL
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522
Query: 660 LDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDK 719
+ P NYV++ N++ +S + + +V ++ GL P +WIE+ + HSF + D+
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582
Query: 720 SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNV-EEEEKVQMLYGHSERLAIAYGVL 778
H +S EIY+KL E+ +++ E GYVA+ +L +V E+EEKV Y HSE+LAIA+G++
Sbjct: 583 LHPQSREIYQKLDELMKEI-SEYGYVAEENELLPDVDEDEEKVSGRY-HSEKLAIAFGLI 640
Query: 779 KSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835
++E + ++IT++ R+C DCH K ++ + RE+VVRDA+RFHHF+ G CSCGDYW
Sbjct: 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 367 bits (943), Expect = e-114
Identities = 203/597 (34%), Positives = 335/597 (56%), Gaps = 15/597 (2%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
M+ + G ++ A +F K+ +R +F+WN ++G Y G L Y RM G+ D +T
Sbjct: 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
FPCV++ C + DL G ++H V++ G++ +VN+L+ MY KC D AR +FDRM
Sbjct: 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
+ D + WN++IS Y +G+CLE L LF M+ + + + T + + ACE E LG
Sbjct: 250 RR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
E+H VK+G + V V N+LI MY G EA V ++E KD+VSW +M++G+ +N
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300
L KA++ + ++ PD++ + +SA LG+L G +LH A ++G +S + + N
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDA 360
L++MY+KC C++ VF+ + +D ISWT+IIAG NN +AL FR + L
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488
Query: 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGL-SDLVILNAIVDVYGKCGNIDYSRNVF 419
V +I + L AC+ + + KEIH +++R G+ D + NA++D+Y +CG ++Y+ N F
Sbjct: 489 SVTLI-AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547
Query: 420 ESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479
S E KDVVSW +++ YV +G + A+ELF M E+ V D +T +S L A S ++
Sbjct: 548 NSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606
Query: 480 KGKELNGFIIRKGFNLEGSVA--SSLVDMYARCGALDIANKVFNCVQ-TKDLILWTSMIN 536
+G E + K +++ ++ + +VD+ R G L A N + T D +W +++N
Sbjct: 607 QGLEYFHSMEEK-YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665
Query: 537 ANGLHGR---GKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMR 590
A +H G++A ++++ S + L LYA +G +E + + MR
Sbjct: 666 ACRIHRHVELGELAAQHIFELDPNSVG--YYILLCNLYA--DAGKWDEVARVRKTMR 718
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 2e-52
Identities = 126/487 (25%), Positives = 228/487 (46%), Gaps = 12/487 (2%)
Query: 111 KARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQ-RVGLVTNAYTFVAALQA 169
K +L D K V L S I A G+ EAL LF ++ A T+ A ++A
Sbjct: 74 KDARLDDTQIRKSGVSLC-SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEA 132
Query: 170 CEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSW 229
C ++ SG Y+ N ++ M+ +CG + +A + ++ ++ SW
Sbjct: 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASW 192
Query: 230 NSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIK 289
+++ G V Y +A FRE+ G + V + AS LG+ G++LH +K
Sbjct: 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252
Query: 290 QGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALEL 349
G V D + L+DMY+KC + VF M + ++W +++AGYA + +AL L
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 350 FRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGL-SDLVILNAIVDVYGK 408
+ ++ G+ D ++ S L + K+ H +IR G D+V A+VD+Y K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 409 CGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSA 468
G ++ +RNVF+ + K+++SW ++I+ Y ++G +A+E+F M V + +T ++
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 469 LSAASSLSILKKGKELNGFIIR-KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKD 527
LSA + ++G E+ + + ++++ R G LD A + K
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492
Query: 528 LI-LWTSMINANGLHGR---GKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGK 583
+ +W +++ A +H G++A + Y M E ++ LL + SG E
Sbjct: 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN----NYVVLLNLYNSSGRQAEAA 548
Query: 584 KFLEIMR 590
K +E ++
Sbjct: 549 KVVETLK 555
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 3e-49
Identities = 103/331 (31%), Positives = 170/331 (51%), Gaps = 3/331 (0%)
Query: 55 SVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQ 114
++ A T+ +++AC LK + C ++ V G++ +++N ++ M+ KC AR+
Sbjct: 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179
Query: 115 LFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSS 174
LFD M E+ ++ W +II +G EA LFREM G TFV L+A
Sbjct: 180 LFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
Query: 175 FETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLT 234
G ++H +K+G +V+ ALI MY++CG + +A V + K +V+WNSML
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298
Query: 235 GFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVS 294
G+ + +A+ + E++ +G DQ + RL L + K+ HA I+ GF
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358
Query: 295 DLQIGNT-LMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTV 353
D+ + NT L+D+Y+K + VF +M ++ ISW +IAGY + KA+E+F +
Sbjct: 359 DI-VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 354 QLEGLDADVMIIGSVLMACSGLKCMSQTKEI 384
EG+ + + +VL AC Q EI
Sbjct: 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 5e-40
Identities = 83/283 (29%), Positives = 145/283 (51%), Gaps = 1/283 (0%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
M+ KCG ++DA +LFD++ +R + +W ++G V G + M G + T
Sbjct: 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
F +++A A L G ++H VLK G F+ +L+ MY+KC D AR +FD M
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 121 EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGM 180
EK V WNS+++ Y+ G EAL L+ EM+ G+ + +TF ++ +
Sbjct: 287 EKT-TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 181 EIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240
+ HA +++G L + AL+ +Y++ G+M +A V ++ K+ +SWN+++ G+ +
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405
Query: 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKEL 283
KA++ F + G P+ V + +SA G G E+
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-24
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 24/133 (18%)
Query: 700 PGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEE 759
PG W E ++ D SH S E E+ +++ + G V +T+ + H+V+ EE
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTSKE------ELFQRI-KVEGVVPETKEIGHDVDAEE 49
Query: 760 KV------QMLYGHSERLAIAYGVLKSTEGSLIRITKNL-RVCVDCHSFCKLVSRLFGRE 812
++L H+E+ A+AYG+L + RI K L R+C DCH F + +++ GRE
Sbjct: 50 FRDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGRE 103
Query: 813 LVVRDANRFHHFE 825
++VRD +RFHHF+
Sbjct: 104 IIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 5e-09
Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 61/237 (25%)
Query: 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFT 60
+Y K G + DA +FD++ ++ + +WNA++ Y ++G + +E + RM G++ + T
Sbjct: 369 LYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428
Query: 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120
F V+ AC GL + ++F M
Sbjct: 429 FLAVLSACRY----------SGLS-------------------------EQGWEIFQSMS 453
Query: 121 E----KEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQAC------ 170
E K + + +I G EA + R R + A L AC
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIR---RAPFKPTVNMWAALLTACRIHKNL 510
Query: 171 ---EDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENK 224
++ + GM + L YV L+ +Y G+ EAA V+ L+ K
Sbjct: 511 ELGRLAAEKLYGMG--------PEKLNNYVV--LLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 124 DVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQAC 170
DVV +N++I Y G+ EAL LF EM++ G+ N YT+ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 1e-07
Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 84/279 (30%)
Query: 411 NIDYSRNVFESIESK----DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLV 466
+ID + V ++ D +T++IS+ +G + E+F+ M A VE++ T
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF- 510
Query: 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK 526
+L+D AR G + A + +++K
Sbjct: 511 ----------------------------------GALIDGCARAGQVAKAFGAYGIMRSK 536
Query: 527 ----DLILWTSMINANGLHGRGKVAIDLFYKMEAES--FAPDHITFLALLYACSHSGLIN 580
D +++ ++I+A G G A D+ +M+AE+ PDHIT AL+ AC+++G ++
Sbjct: 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596
Query: 581 EGKKFLEIMRCDYQLDPWPEHY-----AC------------------------------L 605
K+ +++ +Y + PE Y +C L
Sbjct: 597 RAKEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 606 VDLLGRANHLEEAY---QFVRSMQIEPTAEVWCALLGAC 641
VD+ G A L++A+ Q R I+ + +L+GAC
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 425 KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSIT---LVSAL 469
DVV++ ++I Y G EAL+LF M + ++ + T L+ L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 6e-06
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 23 VFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACA 69
V T+N ++ Y G+ L+ ++ M+ GI + +T+ +I
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 126 VLWNSIISAYSASGQCLEALGLFREMQRVGL 156
V +NS+IS Y +G+ EAL LF+EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 428 VSWTSMISSYVHNGLANEALELFYLMNEANV 458
V++ S+IS Y G EALELF M E V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 224 KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQV 262
D V++N+++ G+ + +A++ F E++ G KP+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY 39
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 60/270 (22%), Positives = 105/270 (38%), Gaps = 42/270 (15%)
Query: 43 LETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAM 102
L Y M+ G+ D F ++ DLD +I K G +SL+
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 103 YAKCYDFRKARQLFDR---MGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTN 159
+ +++KA +L++ + + V N++I+A Q +AL + EM+R+GL N
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753
Query: 160 AYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVL- 218
T+ L A E +G+++ + + G + + + + C + E A L
Sbjct: 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL---CLRRFEKACALG 810
Query: 219 ----------YQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAV 268
Q+ENK W S A+ +RE AG P T+ +
Sbjct: 811 EPVVSFDSGRPQIENK----WTSW------------ALMVYRETISAGTLP----TMEVL 850
Query: 269 SASGRLGNLLNGKELHAYAIKQGFVSDLQI 298
S LG L + H ++ + +L I
Sbjct: 851 SQV--LGCL---QLPHDATLRNRLIENLGI 875
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.63 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.57 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.46 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.44 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.37 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.34 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.31 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.3 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.29 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.14 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.14 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.1 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.09 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.06 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.06 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.98 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.97 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.97 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.91 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.89 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.89 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.8 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.77 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.73 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.72 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.68 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.65 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.6 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.57 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.55 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.51 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.5 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.47 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.44 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.4 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.39 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.36 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.34 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.34 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.34 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.31 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.28 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.24 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.19 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.16 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.12 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.11 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.05 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.04 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.02 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.02 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.59 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.57 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.49 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.47 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.46 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.46 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.43 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.41 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.41 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.33 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.33 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.24 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.2 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.19 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.15 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.12 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.08 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.02 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.01 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.94 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.92 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.84 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.82 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.7 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.68 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.66 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.64 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.34 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.3 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.3 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.28 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.24 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.17 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.14 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.13 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.04 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.04 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.02 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.88 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.75 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.67 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.65 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.45 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.35 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.28 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.26 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.19 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.72 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.7 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.32 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.12 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.97 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.94 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.94 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.92 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.87 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.84 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.68 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.65 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.27 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.2 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.19 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.7 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.22 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.01 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.64 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.99 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.99 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.97 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.57 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 90.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.33 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.43 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.69 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.68 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.52 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.48 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.18 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.08 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.03 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 86.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 86.61 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.36 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.28 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.28 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 86.21 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.19 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.48 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.96 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.63 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.32 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 84.29 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.78 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 83.72 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.65 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.37 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.91 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 82.65 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 82.08 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.19 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.16 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.13 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.13 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.05 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 81.03 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 80.92 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.45 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 80.23 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-168 Score=1500.12 Aligned_cols=809 Identities=35% Similarity=0.665 Sum_probs=798.1
Q ss_pred CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 043955 20 QRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSL 99 (835)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 99 (835)
.++..++|.++.+|++.|++++|+.+|++|...|++|+..+|..++++|...+.++.|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHH
Q 043955 100 VAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLG 179 (835)
Q Consensus 100 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 179 (835)
+++|+++|+++.|.++|++|+. ||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 9999999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 043955 180 MEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKP 259 (835)
Q Consensus 180 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (835)
.++|..+++.|+.+|+.++|+||++|+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHh
Q 043955 260 DQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQ 339 (835)
Q Consensus 260 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 339 (835)
|..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHH
Q 043955 340 NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNV 418 (835)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~ 418 (835)
.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.. ..++|+|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999964 55999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchh
Q 043955 419 FESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGS 498 (835)
Q Consensus 419 f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 498 (835)
|++|+++|+++||+||.+|.++|+.++|+++|++|.. +++||.+||+++|.+|++.|+++.|+++|..+.+.|+.+|..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999986 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGL 578 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 578 (835)
++|+||++|+|||++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||.+||+++|.+|+|.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 579 INEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
+++|+++|++|.+++|+.|+.+||+||+++|+|+|+++||++++++||++||+.+|++|+++|+.|||++.|+.++++++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 659 ELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 659 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
+++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|+|||||||++|++|.|++||++||+.++||.+|++|..+|
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccCCcccccccchhHHHhhhhhhhHHHHHHHhhccCCCCCcEEEEeccccccCccchhhhhhhhhCceEEeecC
Q 043955 739 EREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDA 818 (835)
Q Consensus 739 ~~~~~y~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 818 (835)
++.||+|||+.++|+ +||+||..|++||||||||||||+||||+||||+||||||+|||+++||||||++|||||||+
T Consensus 765 -~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 842 (857)
T PLN03077 765 -KASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDT 842 (857)
T ss_pred -HhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecC
Confidence 999999999999954 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcccCCCC
Q 043955 819 NRFHHFEAGVCSCGD 833 (835)
Q Consensus 819 ~rfh~f~~g~csc~d 833 (835)
+|||||+||+|||||
T Consensus 843 ~rfh~f~~g~csc~d 857 (857)
T PLN03077 843 EQFHHFKDGECSCGD 857 (857)
T ss_pred CcceeCCCCcccCCC
Confidence 999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-138 Score=1212.24 Aligned_cols=612 Identities=35% Similarity=0.628 Sum_probs=604.2
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccch
Q 043955 223 NKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAG-QKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNT 301 (835)
Q Consensus 223 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 301 (835)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHH
Q 043955 302 LMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQT 381 (835)
Q Consensus 302 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 381 (835)
|+++|+++|+++.|.++|++|+.+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcC
Q 043955 382 KEIHGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVES 460 (835)
Q Consensus 382 ~~i~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p 460 (835)
+++|..+.+.|+.. ..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++|...|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999864 55999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHh
Q 043955 461 DSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGL 540 (835)
Q Consensus 461 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 540 (835)
|..||++++.+|++.|.++.|+++|+.+.+.|+.+|..++|+||++|+|||++++|.++|++|.+||+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
+|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|+++|+.|.+++|+.|+..||+||+++|+|+|+++||++
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCC
Q 043955 621 FVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTP 700 (835)
Q Consensus 621 ~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~ 700 (835)
++++||++|+..+|++|+++|+.||+++.|+.+++++++++|++++.|+.|+|+|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHhHHhCCcccCCcccccccchhHHHhhhhhhhHHHHHHHhhccC
Q 043955 701 GSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKS 780 (835)
Q Consensus 701 g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~y~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~ 780 (835)
||||||+++++|.|++||++||+.++||.+|++|..+| ++.||+||+++++||+++++|+..|++||||||||||||+|
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~-~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI-SEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH-HHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeccccccCccchhhhhhhhhCceEEeecCCccccccCcccCCCCCC
Q 043955 781 TEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835 (835)
Q Consensus 781 ~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 835 (835)
|||+||||+||||||+|||+|+||||||+||||||||+||||||+||+|||||||
T Consensus 643 ~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-89 Score=818.09 Aligned_cols=593 Identities=33% Similarity=0.579 Sum_probs=571.1
Q ss_pred CCCCCCChHhHHHHHHhcCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHH
Q 043955 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKI 80 (835)
Q Consensus 1 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i 80 (835)
+|+++|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..+.++
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 043955 81 HGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNA 160 (835)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 160 (835)
|.++.+.|+.||+.++|+||.+|+++|++++|.++|++|+. ||+++||+||.+|++.|++++|+++|++|...|+.||.
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCC
Q 043955 161 YTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240 (835)
Q Consensus 161 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 240 (835)
.||+.+|.+|++.|+++.|+++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..||.++||+||.+|++.|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHH
Q 043955 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFY 320 (835)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 320 (835)
++++|+++|++|...|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc-hhHH
Q 043955 321 QMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD-LVIL 399 (835)
Q Consensus 321 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~ 399 (835)
+|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||.++|.+|++.|+++.++++|..+++.|+.. ..++
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 99999999999999999999999999999999986 699999999999999999999999999999999999975 4599
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchh
Q 043955 400 NAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479 (835)
Q Consensus 400 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 479 (835)
|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.++
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 480 KGKELNGFII-RKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ-TKDLILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 480 ~a~~i~~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
+|.+++..|. +.|+.|+..+|+.++++|+++|++++|.++|++|+ +||..+|++|+.+|..+|+.+.+....+++.+
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~- 685 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE- 685 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Confidence 9999999999 68999999999999999999999999999999996 78999999999999999999998888888887
Q ss_pred CCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh
Q 043955 558 SFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599 (835)
Q Consensus 558 g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 599 (835)
+.|+.. +|..+...|+..|+++++.++.+.|++. |+.+++
T Consensus 686 -l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~ 726 (857)
T PLN03077 686 -LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDP 726 (857)
T ss_pred -hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCC
Confidence 677764 4555566788888888888888888765 766654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-70 Score=637.54 Aligned_cols=479 Identities=25% Similarity=0.414 Sum_probs=445.6
Q ss_pred HHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCC
Q 043955 115 LFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVG-LVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNL 193 (835)
Q Consensus 115 ~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~ 193 (835)
.++..+..++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..+.+.|+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred hcccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 34444444688899999999999999999999999999864 78999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043955 194 QVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGR 273 (835)
Q Consensus 194 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 273 (835)
|..++|.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 274 LGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTV 353 (835)
Q Consensus 274 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (835)
.|..+.++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+.+|+++||+||.+|+++|++++|+++|++|
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC-chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHH
Q 043955 354 QLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTS 432 (835)
Q Consensus 354 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~ 432 (835)
...|+.||..||++++.+|++.|.++.|+++|+.+.+.|++ +..++|+|+++|+|+|++++|.++|++|.+||+++||+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999986 45599999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcC
Q 043955 433 MISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR-KGFNLEGSVASSLVDMYARCG 511 (835)
Q Consensus 433 li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~k~g 511 (835)
||.+|+++|+.++|+++|++|...|+.||.+||+++|.+|++.|.+++|.+++..|.+ .|+.|+..+|+.+|++|+++|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 699999999999999999999
Q ss_pred ChhhHHHHhhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHh
Q 043955 512 ALDIANKVFNCVQ-TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 512 ~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (835)
++++|.++|++|+ .||..+|++|+.+|..+|+.+.|..+++++.+ +.|+. .+|+.++..|++.|++++|.++++.|
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999988886 56777788888888888887777777777764 55653 46777777777777777777777777
Q ss_pred hhcCCCC
Q 043955 590 RCDYQLD 596 (835)
Q Consensus 590 ~~~~~i~ 596 (835)
++. |+.
T Consensus 555 ~~~-g~~ 560 (697)
T PLN03081 555 KRK-GLS 560 (697)
T ss_pred HHc-CCc
Confidence 654 543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=618.89 Aligned_cols=525 Identities=15% Similarity=0.175 Sum_probs=452.6
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhhcCC----CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 043955 89 YDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGE----KEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFV 164 (835)
Q Consensus 89 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 164 (835)
..++...|..+++.++++|++++|.++|++|+. .++...++.++.+|.+.|..++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 445666777777778888888888888888854 13344455666778888888888888887763 7888888
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCC----CCCcccHHHHHHHHHcCC
Q 043955 165 AALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLE----NKDSVSWNSMLTGFVQND 240 (835)
Q Consensus 165 ~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g 240 (835)
.+|++|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 8888888888888888888888888888888888888888888888888888888887 478888888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHH--hCCCccccccchhhhhhhccCChhHHHHH
Q 043955 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIK--QGFVSDLQIGNTLMDMYAKCCCVNYMGRV 318 (835)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 318 (835)
++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8899999999998889999999999999999999999999999998876 57888888999999999999999999999
Q ss_pred HHhcCCC----CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC
Q 043955 319 FYQMTAQ----DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS 394 (835)
Q Consensus 319 f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 394 (835)
|+.|.+. +..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|..+.+.|..
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9988754 568999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -chhHHHHHHHHHHhcCChhhHHHHHHhcC----CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHH
Q 043955 395 -DLVILNAIVDVYGKCGNIDYSRNVFESIE----SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSAL 469 (835)
Q Consensus 395 -~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll 469 (835)
+..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55699999999999999999999999995 5899999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH----HHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChH
Q 043955 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDM----YARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGK 545 (835)
Q Consensus 470 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~----y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 545 (835)
.+|++.|+++.|.++|..|.+.|+.||..++++|+++ |.+|+++.++...|+.+...+...|+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~------------ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS------------ 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH------------
Confidence 9999999999999999999999999999999999987 567777777777777666566666764
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
+|+.+|++|++.|+.||.+||..+|.++...+.++.+..+++.|... +..|+..+|+++++.+++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 59999999999999999999999997666777777666666655432 4556678899999988542 47899999999
Q ss_pred ---CCCCCHH
Q 043955 626 ---QIEPTAE 632 (835)
Q Consensus 626 ---~~~p~~~ 632 (835)
++.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 7778764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=612.77 Aligned_cols=510 Identities=17% Similarity=0.219 Sum_probs=461.0
Q ss_pred CCCCCChHhHHHHHHhcCCCCcch-----HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchH
Q 043955 2 YGKCGSVLDAEQLFDKVSQRTVFT-----WNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDC 76 (835)
Q Consensus 2 y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 76 (835)
|+++|++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|.. ||..+|+.+|.+|++.|+++.
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence 457899999999999999876554 45667779999999999999999964 999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 043955 77 GAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG---EKEDVVLWNSIISAYSASGQCLEALGLFREMQR 153 (835)
Q Consensus 77 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 153 (835)
|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|. ..||.++||+||.+|++.|++++|+++|++|..
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999994 358999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC----CCcc
Q 043955 154 VGLVTNAYTFVAALQACEDSSFETLGMEIHAATVK--SGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN----KDSV 227 (835)
Q Consensus 154 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~d~~ 227 (835)
.|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||++|+++|++++|.++|+.|.+ |+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 99999999999999999999999999999999987 68999999999999999999999999999999976 5679
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhh
Q 043955 228 SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYA 307 (835)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 307 (835)
+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHhcC----CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHH
Q 043955 308 KCCCVNYMGRVFYQMT----AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKE 383 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 383 (835)
++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999994 679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-chhHHHHHHHH----HHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCC
Q 043955 384 IHGYIIRKGLS-DLVILNAIVDV----YGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANV 458 (835)
Q Consensus 384 i~~~~~~~~~~-~~~~~~~li~~----y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~ 458 (835)
+|..+.+.|+. +..+|++|+++ |.+++...++...|+.+...+...|+ ++|+.+|++|++.|+
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGT 843 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCC
Confidence 99999999996 45599999987 44556655555566555445555565 459999999999999
Q ss_pred cCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC----CCChhHHHHH
Q 043955 459 ESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ----TKDLILWTSM 534 (835)
Q Consensus 459 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~l 534 (835)
.||..||+.+|.++. +.+..+.+..+|+.|. .++..+|+++
T Consensus 844 ~Pd~~T~~~vL~cl~-----------------------------------~~~~~~~~~~m~~~m~~~~~~~~~~~y~~L 888 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQ-----------------------------------LPHDATLRNRLIENLGISADSQKQSNLSTL 888 (1060)
T ss_pred CCCHHHHHHHHHHhc-----------------------------------ccccHHHHHHHHHHhccCCCCcchhhhHHH
Confidence 999999988884433 3344455555555543 3466788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHI 564 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~ 564 (835)
|.++.+. .++|+.+|++|...|+.|+..
T Consensus 889 i~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 889 VDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8887433 468999999999999999985
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=364.59 Aligned_cols=677 Identities=12% Similarity=0.021 Sum_probs=384.5
Q ss_pred CCCCChHhHHHHHHhcCC---CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHH
Q 043955 3 GKCGSVLDAEQLFDKVSQ---RTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAK 79 (835)
Q Consensus 3 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 79 (835)
...|++++|.++++++.. ++...|..+...+...|++++|...|++..... +.+...+..+...+...|+++.|..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788888888887653 244567777777888888888888888876643 3445566667777777888888888
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC-CCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 043955 80 IHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG-EKED-VVLWNSIISAYSASGQCLEALGLFREMQRVGLV 157 (835)
Q Consensus 80 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-~~~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 157 (835)
.++.+.+.... +..........+...|++++|...|+++- ..|+ ...+..+...+...|++++|...|++..... +
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p 326 (899)
T TIGR02917 249 HADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-P 326 (899)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 88777765432 22233333334455677777777776651 1122 2233344445566667777777766665542 2
Q ss_pred CChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHHH
Q 043955 158 TNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSMLT 234 (835)
Q Consensus 158 p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~ 234 (835)
.+...+..+...+...|+++.+.+.+..+.+... .+...+..+...|.+.|++++|.+.|+++.+ .+...|..+..
T Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 405 (899)
T TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2334444555556666666666666666655432 2445556666666666666666666665543 23345555566
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhH
Q 043955 235 GFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNY 314 (835)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 314 (835)
.+...|++++|++.|+++......+ ......++..+.+.|+.+.+..++..+.+. .+.+..++..+...|...|+.++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH
Confidence 6666666666666666665533111 123334445555666666666666655543 23344555556666666666666
Q ss_pred HHHHHHhcCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHh
Q 043955 315 MGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRK 391 (835)
Q Consensus 315 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 391 (835)
|.+.|+++.. .+...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|+.+.+...+..+.+.
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666665432 233445555555666666666666666665432 223344555555555566666666666666555
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhH
Q 043955 392 GLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSA 468 (835)
Q Consensus 392 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~l 468 (835)
.+.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.... +.+...+..+
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 555545555566666666666666666655542 244556666666666666666666666655432 1233344445
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChH
Q 043955 469 LSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGK 545 (835)
Q Consensus 469 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 545 (835)
...+...|+.+.|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...|..+...+...|+++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 555555666666666665555432 22344555556666666666666666655542 23445555555556666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
+|++.|+++.. ..|+..++..+..++.+.|++++|.+.++.+.+. .| +...+..+++++.+.|+.++|.+.+++
T Consensus 721 ~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 721 AAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 66666666555 2344444555555555566666666655555432 23 345555555556566666666655555
Q ss_pred C-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 625 M-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 625 m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+ ...| ++.++..+...+...|+ +.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+.
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 2222 34455555555555555 44555555555555555555555555555555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=297.00 Aligned_cols=107 Identities=57% Similarity=1.022 Sum_probs=99.6
Q ss_pred CceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHhHHhCCcccCCcccccccchhHH--------HhhhhhhhHHH
Q 043955 700 PGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEK--------VQMLYGHSERL 771 (835)
Q Consensus 700 ~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~y~~~~~~~~~~~~~~~k--------~~~~~~hse~l 771 (835)
.||||+++ |.|++||++||+. ++..++ ...||.|+++.+.||++++++ +..+++|||||
T Consensus 1 ~~~~w~~~----h~F~sgd~shp~~--------~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKl 67 (116)
T PF14432_consen 1 GGCSWIEV----HSFVSGDRSHPQS--------ELINKM-KEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKL 67 (116)
T ss_pred CCCCccce----EEEEeCCCcCccH--------HHHHHH-HHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHH
Confidence 38999988 9999999999998 445666 788999999999999988776 67999999999
Q ss_pred HHHHhhccCCCCCcEEEEecc-ccccCccchhhhhhhhhCceEEeecCCcccccc
Q 043955 772 AIAYGVLKSTEGSLIRITKNL-RVCVDCHSFCKLVSRLFGRELVVRDANRFHHFE 825 (835)
Q Consensus 772 a~~~~~~~~~~~~~~~~~knl-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 825 (835)
|||||||+| ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 68 Aiafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 68 AIAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 999999999 999999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=361.92 Aligned_cols=676 Identities=9% Similarity=-0.004 Sum_probs=530.1
Q ss_pred CCCCChHhHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHH
Q 043955 3 GKCGSVLDAEQLFDKVSQ--R-TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAK 79 (835)
Q Consensus 3 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 79 (835)
.+.|++++|.+.|+++.+ | +...|..+...+...|++++|+.+++++.... +++...+..+...+...|+++.|..
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 214 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALA 214 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHH
Confidence 345666666666666543 1 33456666666666677777777776665532 3344455555566666677777777
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC--CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 043955 80 IHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG--EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLV 157 (835)
Q Consensus 80 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 157 (835)
.++.+++... .+..++..+...+...|++++|...|+.+. .+.+...+......+...|++++|+..|+++.+.+
T Consensus 215 ~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-- 291 (899)
T TIGR02917 215 AYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA-- 291 (899)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 7776665532 344556666666777777777777776651 11122233333334455677777777777776543
Q ss_pred CCh-hhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHH
Q 043955 158 TNA-YTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSML 233 (835)
Q Consensus 158 p~~-~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li 233 (835)
|+. ..+..+...+...|+++.|...+..+++.... +......+...+.+.|++++|...++.+.. .+...|+.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 370 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG 370 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 332 22223334466778888888888888876543 456677888899999999999999988764 3566788899
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCCh
Q 043955 234 TGFVQNDLYCKAMQFFRELQGAGQKPD-QVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCV 312 (835)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 312 (835)
..+.+.|++++|.++|+++... .|+ ...+..+...+...|+.+.+...+..+.+.... .......++..|.+.|+.
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 447 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQF 447 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCH
Confidence 9999999999999999998774 344 345667777788899999999999998876532 334556678899999999
Q ss_pred hHHHHHHHhcCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHH
Q 043955 313 NYMGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYII 389 (835)
Q Consensus 313 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~ 389 (835)
++|.++++.+.. .+..+|+.+...|...|++++|...|.++.... +.+...+..+...+...|+++.+...+..++
T Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998864 366789999999999999999999999998753 2334456677778889999999999999999
Q ss_pred HhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhH
Q 043955 390 RKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLV 466 (835)
Q Consensus 390 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~ 466 (835)
+..+.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|+.+++++.... ..+..++.
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 99888888999999999999999999999998854 356778889999999999999999999998743 45667888
Q ss_pred hHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCC
Q 043955 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGR 543 (835)
Q Consensus 467 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 543 (835)
.+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|+.++|..+|+++.+ .+..+|..++..+...|+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 89999999999999999999998764 34567788999999999999999999998763 467899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 043955 544 GKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVR 623 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 623 (835)
.++|+++++.+.+.+ .++...+..+...+...|++++|...|+.+. ...|+...+..++.++.+.|++++|.+.++
T Consensus 685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL---KRAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999864 4456778888888999999999999999887 456777888889999999999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 624 SM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 624 ~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
++ ...| +..++..+...+...|+.+.|+..++++++..|+++..+..++++|...|+ ++|.++.+...+.
T Consensus 761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 88 3344 566888888889999999999999999999999999999999999999999 8898887776553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-23 Score=253.03 Aligned_cols=637 Identities=11% Similarity=-0.001 Sum_probs=400.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCC-CCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchH-----------
Q 043955 29 MLGAYVSNGEPLRVLETYSRMRVLGISV-DAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIV----------- 96 (835)
Q Consensus 29 li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~----------- 96 (835)
..+.+...++.+.|.+.++++... .| +...+..+...+...|+.++|.+.++.+.+..... ....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~-~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS-NAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHhcCC
Confidence 344556667777777777766653 33 33455556666667777777777777776655221 1111
Q ss_pred -----HHHHHHHHhcCChHHHHHHHhhcC-CCCCeeeHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043955 97 -----NSLVAMYAKCYDFRKARQLFDRMG-EKEDVVLWN--SIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQ 168 (835)
Q Consensus 97 -----~~Li~~y~~~g~~~~A~~~f~~m~-~~~~~~~~n--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 168 (835)
-.+...+.+.|++++|.+.|+..- ..|+..... .+.......|+.++|++.|+++.+.. +-+......+-.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 112224455555555555555541 111111110 00111112355555555555555432 112223333444
Q ss_pred HhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHH
Q 043955 169 ACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQF 248 (835)
Q Consensus 169 a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 248 (835)
.+...|+.++|...+..+.+..... ..............+.... ....+...+..+-.......|...
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~-~~aa~~~~~~l~~~~~~~~-----------~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGR-DAAAQLWYGQIKDMPVSDA-----------SVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccCCChh-----------hHHHHHHHHHHCCCchHHHHHHHH
Confidence 4445555555555555543321100 0000000000000000000 111122222222222234455555
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCc-
Q 043955 249 FRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDF- 327 (835)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~- 327 (835)
+.++......|+... ...-.++...|+++.|...++..++.. +.+..++..|...|.+.|+.++|...|++....+.
T Consensus 258 L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 258 LAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555443322333221 122334456677777777777777653 22455666777777777888888877777643211
Q ss_pred ----ccHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHh
Q 043955 328 ----ISWTTI------------IAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRK 391 (835)
Q Consensus 328 ----~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 391 (835)
..|..+ ...+.+.|++++|+..|++..... +.+...+..+-..+...|+++.|.+.+..+++.
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 123222 345678899999999999988763 223445566677788889999999999999998
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC------------chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc
Q 043955 392 GLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKD------------VVSWTSMISSYVHNGLANEALELFYLMNEANVE 459 (835)
Q Consensus 392 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~ 459 (835)
.+.+...+..+...|. .++.++|...++.++... ...+..+...+...|++++|++.|++.++ ..
T Consensus 415 ~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~ 491 (1157)
T PRK11447 415 DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LD 491 (1157)
T ss_pred CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 8877777777877775 457899999888776421 22345566778889999999999999987 45
Q ss_pred CCh-hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC----Chh-----
Q 043955 460 SDS-ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK----DLI----- 529 (835)
Q Consensus 460 p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----~~~----- 529 (835)
|+. ..+..+...+...|++++|...+..+++.. +.++....++...+.+.|+.++|...++.+... +..
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 653 455667778889999999999999988753 234445555666778899999999999988642 111
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHH
Q 043955 530 ----LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYAC 604 (835)
Q Consensus 530 ----~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~ 604 (835)
.+..+...+...|+.++|+++++. .+++...+..+...+...|+.++|...|+... .+.| +...+..
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al---~~~P~~~~a~~~ 642 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL---TREPGNADARLG 642 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 123456778899999999999872 23344556777788899999999999999887 4577 5888999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC------chHHHHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG------NYVLISNVFA 676 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~ 676 (835)
++.+|...|++++|++.++.. ...|+ ..++..+..++...|+.+.|...++++++..|+++. .+..++.+|.
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999987 45564 457777888888899999999999999999887654 4566799999
Q ss_pred hcCCchHHHHHHH-HHHcCCC
Q 043955 677 ASRKWKDVEQVRM-RMRGSGL 696 (835)
Q Consensus 677 ~~g~~~~a~~~~~-~m~~~~~ 696 (835)
..|++++|....+ .|...|+
T Consensus 723 ~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 723 QTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred HcCCHHHHHHHHHHHHhhcCC
Confidence 9999999998854 4454455
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-23 Score=252.61 Aligned_cols=627 Identities=12% Similarity=0.016 Sum_probs=428.0
Q ss_pred CCCChHhHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccH-----------------HH
Q 043955 4 KCGSVLDAEQLFDKVSQ--R-TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTF-----------------PC 63 (835)
Q Consensus 4 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~ 63 (835)
..++.+.|.+.++++.. | |+..+..++..+.+.|+.++|...++++.+.. |+...+ ..
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHH
Confidence 45788889999888763 3 66788889999999999999999999998853 544333 22
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCh
Q 043955 64 VIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQC 141 (835)
Q Consensus 64 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~~ 141 (835)
+.+.+...|++++|.+.++.+.+...+........+.......|+.++|++.|+++ ..+.+...+..+...+...|+.
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 23457788999999999999987643221111111222233459999999999998 2223566788888999999999
Q ss_pred hHHHHHHHHHHHCCCCC----------------Chh---hHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 043955 142 LEALGLFREMQRVGLVT----------------NAY---TFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALI 202 (835)
Q Consensus 142 ~~A~~l~~~m~~~g~~p----------------~~~---t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li 202 (835)
++|++.|+++....... +.. .+...+..+-.......+...+....+....|+.. ...+.
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHH
Confidence 99999999987542110 000 11111111222222334444444443333333322 12345
Q ss_pred HHHHhCCChhHHHHHHhcCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHH------------H
Q 043955 203 AMYARCGKMTEAAGVLYQLEN--K-DSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQ-VCTV------------N 266 (835)
Q Consensus 203 ~~y~~~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~------------~ 266 (835)
..+...|++++|...|++..+ | +...+..+...|.+.|++++|+..|++..+....... ..+. .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 667788999999999987754 3 5677888889999999999999999988765322111 1111 1
Q ss_pred HHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCCh
Q 043955 267 AVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCH 343 (835)
Q Consensus 267 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~ 343 (835)
.-..+.+.|++++|...+..+++.. +.+...+..|...|...|++++|.+.|++.... +...+..+...|. .++.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 1234567788888888888888764 234456667778888888888888888887543 3445666666664 4567
Q ss_pred HHHHHHHHHHHHcCCCC--------ChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhH
Q 043955 344 LKALELFRTVQLEGLDA--------DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYS 415 (835)
Q Consensus 344 ~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 415 (835)
++|+.+++.+....... ....+......+...|++++|.+.+..+++..+.+..++..+...|.+.|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888877654321000 0112333444566677888888888888887777766777788888888888888
Q ss_pred HHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhC
Q 043955 416 RNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKG 492 (835)
Q Consensus 416 ~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 492 (835)
...|+++.+ | +...+..+...+.+.|+.++|+..++++......++...+. ..+
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~-------------------~~l---- 571 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA-------------------QRL---- 571 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH-------------------HHH----
Confidence 888877643 2 44444444455666778888888777764322111111000 000
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 043955 493 FNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLY 571 (835)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~ 571 (835)
.......+.+.|...|+.++|.++++. ...+...+..+...|.+.|+.++|++.|++..+ ..|+. ..+..+..
T Consensus 572 ---~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~ 645 (1157)
T PRK11447 572 ---QSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIE 645 (1157)
T ss_pred ---hhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 001123456778899999999999984 334666788899999999999999999999998 46764 57888889
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC---C----CHHHHHHHHHHHh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIE---P----TAEVWCALLGACR 642 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~---p----~~~~~~~ll~a~~ 642 (835)
.+...|+.++|.+.++... ...| +...+..+..++.+.|++++|.++++++ +.. | ++.++..+.....
T Consensus 646 ~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999776 4566 4677788899999999999999999987 222 2 2346666778889
Q ss_pred hcCchhHHHHHHHHHHh---cCCCCCCc
Q 043955 643 VHSNKELGEIVAKKLLE---LDPGNPGN 667 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~---l~p~~~~~ 667 (835)
..|+.+.|+..+++++. +.|..++.
T Consensus 723 ~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 723 QTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 99999999999999985 55655554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-22 Score=232.88 Aligned_cols=634 Identities=9% Similarity=-0.022 Sum_probs=436.3
Q ss_pred HHHHHHHH--HhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 043955 26 WNAMLGAY--VSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMY 103 (835)
Q Consensus 26 ~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 103 (835)
+..+..++ ...|++++|+..|++..+.. |-+...+..+...+...|+.++|....+..++.. |+...+..++..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh
Confidence 33344443 33489999999999988753 2234577888888899999999999998888764 4433333333322
Q ss_pred HhcCChHHHHHHHhhc--CCCCCeeeHHHHHHH--------HHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHhhc
Q 043955 104 AKCYDFRKARQLFDRM--GEKEDVVLWNSIISA--------YSASGQCLEALGLFREMQRVGLVTNAYTFVAA-LQACED 172 (835)
Q Consensus 104 ~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~ 172 (835)
++.++|..+++++ ..+-+...+..+... |.+. ++|.+.++ .......|+..+.... .+.+..
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 8888999999988 221233333333333 6665 44444444 4433345555555555 788889
Q ss_pred CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-CCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHH
Q 043955 173 SSFETLGMEIHAATVKSGQNLQVYVANALIAMYAR-CGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRE 251 (835)
Q Consensus 173 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (835)
.++++.+..++..+.+.+... ......|-..|.. .++ +.+..+++...+.|...+..+...|.+.|+.++|..++++
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999999987654 4445666668887 466 8888887765556888899999999999999999999999
Q ss_pred HHHCCCC-CCcchHHHHHHHHhccCChHh-HHHHHHHHHHhCCCcc-ccccchhhhhhhccCChhHHHHHHHhcCCCCcc
Q 043955 252 LQGAGQK-PDQVCTVNAVSASGRLGNLLN-GKELHAYAIKQGFVSD-LQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFI 328 (835)
Q Consensus 252 m~~~g~~-p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 328 (835)
+...-.. |...++.-.+ .+.+.... +..-+. + .+.++ ....-.+++.+.+.+..+.+.++.+ ....+..
T Consensus 273 ~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 344 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLL---SKYSANPVQALANYT---V-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM 344 (987)
T ss_pred CcccccCCCccHHHHHHH---HhccCchhhhccchh---h-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH
Confidence 8765333 5555544443 33333221 100000 0 01111 1123344777888888887777744 3222332
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCC---CchhHHHHHHHH
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGL---SDLVILNAIVDV 405 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~li~~ 405 (835)
.-.=..+....+...++...++.|-+... -+....-.+--.....|+.+++.+++........ .+..+.+-|++.
T Consensus 345 -~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 345 -LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred -HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 11111222344666777777777765411 1222222222223456778888888877776321 233466678888
Q ss_pred HHhcCChhhHHHHHH----------------------------hcCC---C--CchhHHHHHHHHHhCCChHHHHHHHHH
Q 043955 406 YGKCGNIDYSRNVFE----------------------------SIES---K--DVVSWTSMISSYVHNGLANEALELFYL 452 (835)
Q Consensus 406 y~k~g~~~~A~~~f~----------------------------~~~~---~--~~~~~~~li~~~~~~g~~~~Al~lf~~ 452 (835)
|.+.+.+....++.. .... + +...|..+...+.. +++++|+..|.+
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 888776333322211 1111 2 45667777777776 899999998888
Q ss_pred HhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHH
Q 043955 453 MNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWT 532 (835)
Q Consensus 453 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~ 532 (835)
.... .|+......+..+....|+++.|...+..+... .|+......+...+.+.|++++|...|+.....++..++
T Consensus 502 Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~ 577 (987)
T PRK09782 502 AEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA 577 (987)
T ss_pred HHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH
Confidence 8763 477665444555556899999999999887554 344445567788899999999999999987765444343
Q ss_pred HHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 533 SMIN---ANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 533 ~li~---~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
.... .....|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...|+... .+.| +...+..+..+
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHH
Confidence 3333 33345999999999999998 67888888899999999999999999999887 6688 48889999999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHH
Q 043955 609 LGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
|...|++++|++.+++. ...| ++.+|..|..++...|+.+.|+..++++++++|+++......+++.....+++.+.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999987 5667 456899999999999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 043955 687 VRMRM 691 (835)
Q Consensus 687 ~~~~m 691 (835)
-.+.-
T Consensus 733 ~~~r~ 737 (987)
T PRK09782 733 EVGRR 737 (987)
T ss_pred HHHHH
Confidence 66543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-20 Score=220.25 Aligned_cols=641 Identities=11% Similarity=-0.012 Sum_probs=425.4
Q ss_pred CCCChHhHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHH
Q 043955 4 KCGSVLDAEQLFDKVSQ--R-TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKI 80 (835)
Q Consensus 4 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i 80 (835)
..|++++|...|+...+ | +...+..+.+.|.+.|++++|+..+++..+. .|+...|..++... ++.+.|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 45999999999998875 3 4567888999999999999999999999875 56666665555333 889999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHH--------HHhcCChHHHHHHHhhcCCCCCeeeHHHH-HHHHHhCCChhHHHHHHHHH
Q 043955 81 HGLVLKCGYDSTDFIVNSLVAM--------YAKCYDFRKARQLFDRMGEKEDVVLWNSI-ISAYSASGQCLEALGLFREM 151 (835)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~~~~~~~n~l-i~~~~~~g~~~~A~~l~~~m 151 (835)
++.+.+.... +..++..+... |.+.+...++++ ....+..|+....... ...|.+.|++++|++++.++
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999987633 34455555554 877766666666 3333332344444444 89999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHhhc-CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC-----CC
Q 043955 152 QRVGLVTNAYTFVAALQACED-SSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN-----KD 225 (835)
Q Consensus 152 ~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~d 225 (835)
.+.+... ..-...+-.++.. .++ +.+..++.. .+..++.+..++.+.|.+.|+.++|.+++.+++. |+
T Consensus 209 ~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 209 RQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 9986433 3334444455555 355 556555332 4446888999999999999999999999999874 33
Q ss_pred cccHHHHHHHHHcCCChh-HHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhh
Q 043955 226 SVSWNSMLTGFVQNDLYC-KAMQFFRELQGAGQKPDQV-CTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLM 303 (835)
Q Consensus 226 ~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 303 (835)
..+|--.+ .+.+... .|..-|.+ ...++.. .....+..+.+.++++.++++.. ..|.... -.+=
T Consensus 283 ~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~r 348 (987)
T PRK09782 283 EKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-LEER 348 (987)
T ss_pred cHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH-HHHH
Confidence 34443332 2322221 11111111 0111111 11122444455555554443321 2222222 1111
Q ss_pred hhhh-ccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCChhHHHHHHHHhccccC
Q 043955 304 DMYA-KCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLE-G-LDADVMIIGSVLMACSGLKC 377 (835)
Q Consensus 304 ~~y~-~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~~~ 377 (835)
.++. ..+...++.+.+..|-.. +....--+.-..++.|+.++|..+|+..... + ..++.....-++..+.+...
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred HhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 1222 124444444444444332 2222222333345566666666666665441 1 11222222233333333322
Q ss_pred -------------------------chHHHHHHHHHHHh---CCC--chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCc
Q 043955 378 -------------------------MSQTKEIHGYIIRK---GLS--DLVILNAIVDVYGKCGNIDYSRNVFESIESKDV 427 (835)
Q Consensus 378 -------------------------~~~~~~i~~~~~~~---~~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~ 427 (835)
...+......+.+. .+. +...+..+...+.. ++.++|...|.+.....+
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P 507 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP 507 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC
Confidence 22222222222222 233 44488888888887 888889998877654333
Q ss_pred hhHHHHHHHH--HhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 428 VSWTSMISSY--VHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 428 ~~~~~li~~~--~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
..|+.+..++ .+.|++++|...|+++... .|+...+..+..++...|+++.|...+...++... .+...+..+..
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~ 584 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHA 584 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHH
Confidence 4565554454 5899999999999998653 45555566666778889999999999999988652 22333333444
Q ss_pred HHHhcCChhhHHHHhhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHH
Q 043955 506 MYARCGALDIANKVFNCVQ--TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEG 582 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a 582 (835)
...+.|++++|...|++.. .|+...|..+...+.+.|+.++|+..|++... ..|+.. .+..+..++...|+.++|
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4445699999999999877 36788999999999999999999999999998 678775 466666789999999999
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
+..|+... .+.| +...+..+..++.+.|++++|++.+++. ...|+.. +--..........+++.+...+++...
T Consensus 663 i~~l~~AL---~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 663 REMLERAH---KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999887 5678 5888999999999999999999999988 7788654 555555666777889999999999999
Q ss_pred cCCCCCCchHHHHHHHHhcCCc
Q 043955 660 LDPGNPGNYVLISNVFAASRKW 681 (835)
Q Consensus 660 l~p~~~~~~~~l~~~y~~~g~~ 681 (835)
++|... +....+.++...+++
T Consensus 740 ~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 740 FSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred cCccch-hccccchHhhhcccc
Confidence 999877 777777777766655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-19 Score=182.98 Aligned_cols=377 Identities=12% Similarity=0.102 Sum_probs=318.3
Q ss_pred ccccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-
Q 043955 296 LQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA- 371 (835)
Q Consensus 296 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a- 371 (835)
..+|..+.+.+-..|++++|...++.+.+. .+..|-.+..++...|+.+.|...|.+.++ +.|+.+-..+-+.-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHH
Confidence 345666777777778888888888776543 567888899999999999999999988876 46766555443333
Q ss_pred hccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---chhHHHHHHHHHhCCChHHHHH
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKD---VVSWTSMISSYVHNGLANEALE 448 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~Al~ 448 (835)
....|.+.++...+-..++..+.-.++|+.|...+-..|++..|..-|++...-| ...|-.|...|...+.+++|+.
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 3346888999999999998888777799999999999999999999999887533 3567778889999999999999
Q ss_pred HHHHHhhcCCcCCh-hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCC-
Q 043955 449 LFYLMNEANVESDS-ITLVSALSAASSLSILKKGKELNGFIIRKGFNLE-GSVASSLVDMYARCGALDIANKVFNCVQT- 525 (835)
Q Consensus 449 lf~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~- 525 (835)
.|.+... ..|+. +.+..+-..+-..|.++.|..-+.+.+.. .|+ +..|+.|..++-..|++.+|.+.|.+...
T Consensus 274 ~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 274 CYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9998876 56764 45555555667889999999988888764 344 56789999999999999999999998763
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhH
Q 043955 526 --KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEH 601 (835)
Q Consensus 526 --~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~ 601 (835)
.-..+.+.|...|...|..++|..+|....+ +.|.- ..++.|.+.+-..|.+++|...++... .|+|+ .+.
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHH
Confidence 3567899999999999999999999999998 88886 568899999999999999999999877 89997 899
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
|+.|+..|-..|+.++|.+.+.++ .+.|.-. ..+.|.+.++..||+.+|+..++.+++++|+.+.+|-.|.-.+--..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999988 7888654 78899999999999999999999999999999999999988888888
Q ss_pred CchH
Q 043955 680 KWKD 683 (835)
Q Consensus 680 ~~~~ 683 (835)
.|.|
T Consensus 505 dw~D 508 (966)
T KOG4626|consen 505 DWTD 508 (966)
T ss_pred cccc
Confidence 8888
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-18 Score=175.90 Aligned_cols=356 Identities=11% Similarity=0.093 Sum_probs=299.4
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVD 404 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~ 404 (835)
-..+|..+.+.+-..|+.++|+.+++.|.+. +|+ ...|..+..++...|+.+.+.+.+...++..+....+.+.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 3457888999999999999999999999885 453 4568888888999999999999999999998877667788888
Q ss_pred HHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh-hhhHhHHHHhhcccchhh
Q 043955 405 VYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS-ITLVSALSAASSLSILKK 480 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 480 (835)
..-..|++++|..-+.+..+ | =.+.|+-|...+...|+..+|++.|.+... +.|+- -.|..+-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 88889999999998877654 4 357899999999999999999999999987 56653 233333334444444444
Q ss_pred HHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 481 GKELNGFIIRKGFNLE-GSVASSLVDMYARCGALDIANKVFNCVQT--K-DLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 481 a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
|...+... ....|+ ..++..|...|-..|.+|-|...|++..+ | -+..||.|..++-..|+..+|.+.|++.+.
T Consensus 271 Avs~Y~rA--l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRA--LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHH--HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 44433333 345554 56677788889999999999999998764 3 457999999999999999999999999998
Q ss_pred CCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-
Q 043955 557 ESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE- 632 (835)
Q Consensus 557 ~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~- 632 (835)
+.|+. -..+.|...+...|.+++|..+|.... .+.|. ....+.+..+|-.+|++++|+..+++. .++|+..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 78887 468889999999999999999999766 67786 788999999999999999999999988 8999866
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.++.+...+...|+++.|...+.+++..+|.-+.++..|+.+|-.+|+..+|..-.+..-
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999998765443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-16 Score=178.65 Aligned_cols=248 Identities=15% Similarity=0.065 Sum_probs=188.5
Q ss_pred CCChHHHHHHHHHHhhcC-CcCCh-hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHH
Q 043955 440 NGLANEALELFYLMNEAN-VESDS-ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIAN 517 (835)
Q Consensus 440 ~g~~~~Al~lf~~m~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 517 (835)
.+++++|++.|++....+ ..|+. ..+..+-..+...|+++.|...+..+++.. +.....+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777776643 23332 233344444455677777777777666542 123446677888888999999999
Q ss_pred HHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcC
Q 043955 518 KVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDY 593 (835)
Q Consensus 518 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 593 (835)
..|+... ..+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++...|+.++|...|+....
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9998765 34678899999999999999999999999998 56765 4566777788899999999999998873
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HH-------HHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-EV-------WCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~-------~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..| +...|..++.++...|++++|++.+++. .+.|+. .+ ++..+..+...|+.+.|+..++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 457 4788999999999999999999999886 454531 11 122222234469999999999999999999
Q ss_pred CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 664 NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 664 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+...+..|+.+|...|++++|.+..+...+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999998776554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-17 Score=180.23 Aligned_cols=290 Identities=16% Similarity=0.147 Sum_probs=196.2
Q ss_pred HHhcCChhhHHHHHHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCC---hhhhHhHHHHhhcccchh
Q 043955 406 YGKCGNIDYSRNVFESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEANVESD---SITLVSALSAASSLSILK 479 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 479 (835)
+...|++++|...|.++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34555555555555555431 223455555555556666666666655554321111 123344445555555666
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCC--------hhHHHHHHHHHHhcCChHHHHHHH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKD--------LILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~--------~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..++..+...|+.++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6665555555431 2345566777777888888888888887765321 123556777778888888888888
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043955 552 YKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QI 627 (835)
Q Consensus 552 ~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 627 (835)
+++.+. .|+. .++..+...+.+.|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.+.++++ ..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888873 4553 45666777788888899999888888743 453 466778888899999999999988887 55
Q ss_pred CCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh--cCCchHHHHHHHHHHcCCCccCCc
Q 043955 628 EPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA--SRKWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 628 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~k~~g 701 (835)
.|+...+..+...+..+|+.+.|...++++++..|+++....++...+.. .|+.+++..+.+.|.+++++..|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67766667777888889999999999999999999877544444333322 568999999999999889988887
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-16 Score=178.38 Aligned_cols=350 Identities=11% Similarity=0.013 Sum_probs=278.4
Q ss_pred ccCChhHHHHHHHhcCCC------CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHH
Q 043955 308 KCCCVNYMGRVFYQMTAQ------DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQT 381 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 381 (835)
|..+++.-.-.|..-+++ +..-.-.++..+.+.|++++|+.+++..+.....+....+ .+..++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHH
Confidence 445555555555555432 3344556778889999999999999999887544433333 344555679999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCC
Q 043955 382 KEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANV 458 (835)
Q Consensus 382 ~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~ 458 (835)
.+.+..+++..+.+...+..+...|.+.|++++|...|++... | +...|..+...+.+.|++++|...++++...
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-- 173 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-- 173 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--
Confidence 9999999999998888899999999999999999999998764 3 5678888999999999999999999988764
Q ss_pred cCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHH
Q 043955 459 ESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMI 535 (835)
Q Consensus 459 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li 535 (835)
.|+.......+..+...|++++|...+..+.+....++......+...|.+.|+.++|...|+.... .+...+..+.
T Consensus 174 ~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 174 VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3444333333345678899999999998887765434445556667889999999999999998763 4677889999
Q ss_pred HHHHhcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHH
Q 043955 536 NANGLHGRGKV----AIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLL 609 (835)
Q Consensus 536 ~~~~~~g~~~~----Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l 609 (835)
..|...|+.++ |+..|++..+ ..|+. ..+..+...+...|++++|..+++... .+.|+ ...+..+..+|
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al---~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL---ATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHH
Confidence 99999999986 8999999998 57775 467788889999999999999999887 45674 67778899999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 610 GRANHLEEAYQFVRSM-QIEPTAEVWCA-LLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 610 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
.+.|++++|.+.++++ ...|+...|.. +..++...|+.+.|...++++++.+|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999988 46676554444 45678889999999999999999999875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=174.80 Aligned_cols=294 Identities=16% Similarity=0.147 Sum_probs=220.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc----hhHHHHHHHHHH
Q 043955 333 IIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD----LVILNAIVDVYG 407 (835)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~li~~y~ 407 (835)
....+...|++++|+..|.++... .|+ ..++..+...+...|+++.|..++..+++.+..+ ..++..+...|.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 344566788999999999999875 344 3466667777778888888888888777754322 125677778888
Q ss_pred hcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHH
Q 043955 408 KCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKEL 484 (835)
Q Consensus 408 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 484 (835)
+.|++++|..+|+++.+ .+..+++.++..|.+.|++++|++.|+++...+..++...
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------- 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------- 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------
Confidence 88888888888887764 3556777778888888888888888888776432221110
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043955 485 NGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP 561 (835)
Q Consensus 485 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P 561 (835)
....+..+...|.+.|++++|.+.|+++.+ .+...|..++..|.+.|++++|+++|+++.+. .|
T Consensus 179 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p 245 (389)
T PRK11788 179 -----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DP 245 (389)
T ss_pred -----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Ch
Confidence 011245677788899999999999998763 34668888999999999999999999999984 45
Q ss_pred C--HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043955 562 D--HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALL 638 (835)
Q Consensus 562 d--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll 638 (835)
+ ..++..+..++...|++++|..+++.+.+ ..|+...+..++.++.+.|++++|.++++++ ...|+...+..++
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4 35678888999999999999999999884 4677677788999999999999999999876 6679998998888
Q ss_pred HHHhh---cCchhHHHHHHHHH----HhcCCCC
Q 043955 639 GACRV---HSNKELGEIVAKKL----LELDPGN 664 (835)
Q Consensus 639 ~a~~~---~~~~~~a~~~~~~~----~~l~p~~ 664 (835)
..... +|+.+.+...++++ ++.+|++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 76543 44666665555544 5566653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-15 Score=178.96 Aligned_cols=360 Identities=9% Similarity=-0.034 Sum_probs=210.0
Q ss_pred cchhhhhhhccCChhHHHHHHHhcC---CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 043955 299 GNTLMDMYAKCCCVNYMGRVFYQMT---AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGL 375 (835)
Q Consensus 299 ~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 375 (835)
+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++++|+..+++.... .|+...+..+..++...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHC
Confidence 3344444444444444444444421 223444556666667777777777777777654 33332255555556667
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCch--------hHHHHHHHHH-----hCCC
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVV--------SWTSMISSYV-----HNGL 442 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~ 442 (835)
|+.+.|...+..+++..+.+..+...+...+.+.|..+.|.+.++.... ++. ....++..+. ..++
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 7777777777777777776666666677777777888888888877665 211 1111111111 1122
Q ss_pred h---HHHHHHHHHHhhc-CCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHH
Q 043955 443 A---NEALELFYLMNEA-NVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANK 518 (835)
Q Consensus 443 ~---~~Al~lf~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (835)
+ ++|++.++.+... ...|+... ....+ ....+. ++...|+.++|+.
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~--~~~~a---------------------------~~d~l~-~Ll~~g~~~eA~~ 258 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATA--DYQRA---------------------------RIDRLG-ALLARDRYKDVIS 258 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccch--HHHHH---------------------------HHHHHH-HHHHhhhHHHHHH
Confidence 2 5566666666542 11222111 00000 000011 2234467777777
Q ss_pred HhhhCCCCC---hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHh
Q 043955 519 VFNCVQTKD---LI-LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-----ITFLALLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 519 ~f~~~~~~~---~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (835)
.|+.+.+.+ +. .--.+...|...|++++|+..|+++... .|.. .....+..++...|..++|.++++.+
T Consensus 259 ~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 259 EYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777666431 11 1111355666777777777777776653 2221 23444555667777777777777766
Q ss_pred hhcCC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 590 RCDYQ----------LDPW---PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 590 ~~~~~----------i~p~---~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
..... -.|+ ...+..++.++...|++++|++.++++ ...| +...|..+.......|+.+.|+..+
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 64311 1122 234556777777888888888888776 4444 4457777777777888888888888
Q ss_pred HHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 655 KKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 655 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+++++++|+++..++.++.++...|+|++|..+.+.+.+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888777665543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=178.06 Aligned_cols=364 Identities=13% Similarity=0.044 Sum_probs=247.7
Q ss_pred cchhhhhhhccCChhHHHHHHHhcCC-C--CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcc
Q 043955 299 GNTLMDMYAKCCCVNYMGRVFYQMTA-Q--DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSG 374 (835)
Q Consensus 299 ~~~Li~~y~~~g~~~~A~~~f~~m~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 374 (835)
..-.+......|+.++|.+++.+... . +...+..+...+...|++++|..+|++.... .|+ ......+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33445556667777777777777653 2 3344788888888888888888888887764 343 3344555566777
Q ss_pred ccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHH
Q 043955 375 LKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFY 451 (835)
Q Consensus 375 ~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~ 451 (835)
.++.++|...+..+++..+.+.. +..+...|...|+.++|...+++..+ | +...+..+...+...|..++|++.++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 88888888888888888777666 77788888888888888888887754 3 44455666777777788888888777
Q ss_pred HHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---hhHHHHhhhCCC---
Q 043955 452 LMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGAL---DIANKVFNCVQT--- 525 (835)
Q Consensus 452 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~---~~A~~~f~~~~~--- 525 (835)
+... .|+.... +.. . ......+. .+...+...+++ ++|...++.+.+
T Consensus 175 ~~~~---~p~~~~~---l~~-------~----~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 175 DANL---TPAEKRD---LEA-------D----AAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred hCCC---CHHHHHH---HHH-------H----HHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 6553 3431000 000 0 00000000 011111222333 566666666552
Q ss_pred CChhH-------HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC
Q 043955 526 KDLIL-------WTSMINANGLHGRGKVAIDLFYKMEAESFA-PDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP 597 (835)
Q Consensus 526 ~~~~~-------~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 597 (835)
+++.. +...+..+...|+.++|+..|+++.+.+.. |+..-. .+..++...|++++|..+|+.+.+.....+
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 22211 111234556779999999999999987532 544322 246688999999999999998874322221
Q ss_pred --ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------CH---HHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 598 --WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-------------TA---EVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 598 --~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-------------~~---~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
....+..+..++.+.|++++|.+.++++ ...| +. ..+..+.......|+.+.|+..+++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1356777888899999999999999887 3333 21 234455567888899999999999999
Q ss_pred hcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 659 ELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 659 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..|+++..+..++.+|...|+.++|.+..+...+
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-14 Score=153.59 Aligned_cols=649 Identities=13% Similarity=0.071 Sum_probs=348.6
Q ss_pred CChHhHHHHHHhcC--CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC----CCCC--ccHHHHHHHHh-ccC----
Q 043955 6 GSVLDAEQLFDKVS--QRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGI----SVDA--FTFPCVIKACA-MLK---- 72 (835)
Q Consensus 6 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~--~~~~~ll~~~~-~~~---- 72 (835)
..+.+|-++..-+. +.....|......|...|..++.+.+++.-..... .++. ..-...+.++- ..+
T Consensus 22 ~~LPD~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek 101 (1018)
T KOG2002|consen 22 DQLPDATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEK 101 (1018)
T ss_pred hcCCChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554433 34567899999999999999999998876552110 1111 11111112211 110
Q ss_pred -------CchHHHHHHHHHHHhCCCCCcc-hHHHHHHHHHhcCC--hHHHHHHHhhc--CCCCCeeeHHHHHHHH--HhC
Q 043955 73 -------DLDCGAKIHGLVLKCGYDSTDF-IVNSLVAMYAKCYD--FRKARQLFDRM--GEKEDVVLWNSIISAY--SAS 138 (835)
Q Consensus 73 -------~~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~--~~~A~~~f~~m--~~~~~~~~~n~li~~~--~~~ 138 (835)
....|..+|...-+.....++. ++... .|...|. ++.|...|... ..++|+.. .+..++ ...
T Consensus 102 ~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynk 177 (1018)
T KOG2002|consen 102 KKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQSPDNILA--LLGKARIAYNK 177 (1018)
T ss_pred hcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhCCcchHH--HHHHHHHHhcc
Confidence 0111222222221111111111 11111 1222233 47788888776 22223322 222332 345
Q ss_pred CChhHHHHHHHHHHHC--CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC---ChhH
Q 043955 139 GQCLEALGLFREMQRV--GLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCG---KMTE 213 (835)
Q Consensus 139 g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~ 213 (835)
|++..|+.+|...... ..+||... .+-..+.+.++.+.|+..|.++++..+ .++..+-+|--.-.... .+..
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHH
Confidence 7888888888886543 23444422 122345677777888877777776544 12222222221111222 2334
Q ss_pred HHHHHhcCC---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC--CCcchHHHHHHHHhccCChHhHHHHHHHHH
Q 043955 214 AAGVLYQLE---NKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQK--PDQVCTVNAVSASGRLGNLLNGKELHAYAI 288 (835)
Q Consensus 214 A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 288 (835)
+..++...- ..|++..+.|-.-|.-.|++..++.+...+...-.. .-...|-.+-+++-..|+++.|...+-...
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444332 247777888888888888888888888777653210 011246667777778888888888877766
Q ss_pred HhCCCccccccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCC
Q 043955 289 KQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNN----CHLKALELFRTVQLEGLDAD 361 (835)
Q Consensus 289 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~ 361 (835)
+..-...+..+--|..+|.+.|+++.+...|+.+... +..+-..+...|+..+ ..+.|..++.+..+.- +.|
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d 413 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVD 413 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-ccc
Confidence 6543222334445778888888888888888877543 3344445555565554 3455555555544432 223
Q ss_pred hhHHHHHHHHhccccCchHHHHHHHHHH----HhCCC-chhHHHHHHHHHHhcCChhhHHHHHHhcCCC-------Cch-
Q 043955 362 VMIIGSVLMACSGLKCMSQTKEIHGYII----RKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESK-------DVV- 428 (835)
Q Consensus 362 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~----~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-------~~~- 428 (835)
...|..+-..+.. ++.......+..+. ..+.+ ...+.|.+...+...|+++.|...|+....+ |..
T Consensus 414 ~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 3444444444333 33333344444433 22322 3447777777777777777777777655421 221
Q ss_pred ------hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhh-cccchhhHHHHHHHHHHhCCCCchhHHH
Q 043955 429 ------SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAAS-SLSILKKGKELNGFIIRKGFNLEGSVAS 501 (835)
Q Consensus 429 ------~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 501 (835)
-|| +...+-..++.+.|.+.|...... .|+-++--.=+.+.+ ..+.+.++...+..+... -..++.+++
T Consensus 493 ~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARS 568 (1018)
T ss_pred cchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHH
Confidence 122 233344556777777777777663 455443211111111 123444555544444432 234555666
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCC-CH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQT-----KDLILWTSMINANGL------------HGRGKVAIDLFYKMEAESFAP-DH 563 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~------------~g~~~~Al~l~~~m~~~g~~P-d~ 563 (835)
-+.+.|.+.....-|.+-|..+.. +|..+.-+|.+.|.+ .+..++|+++|.+.+. ..| |.
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~ 646 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNM 646 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 666677776666666665544332 244444444443332 2345667777777766 344 33
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CC--CCCHHHHHHHHH
Q 043955 564 ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QI--EPTAEVWCALLG 639 (835)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~--~p~~~~~~~ll~ 639 (835)
..-+++.-.+++.|.+++|+.+|.+.++... -....|-.+..+|..+|++-.|.+.++.. .+ +-++.+...|..
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 4555666666777777777777776664422 23345666667777777777777777654 12 224556666777
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
++...|....|..++.++..+.|.|+..-..+
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 77777777777777777777777776544333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-13 Score=151.50 Aligned_cols=331 Identities=12% Similarity=0.056 Sum_probs=210.6
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCh-----hH-HHHHHHHhccccCchHHHHHHHHHHHhCCCc
Q 043955 325 QDFISWTTIIAGYAQNNCHLKALELFRTVQLE---GLDADV-----MI-IGSVLMACSGLKCMSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 325 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~ 395 (835)
..+...|.+...+...|++++|...|.+.... ...+|. .| -..+-......++.+.|.+.+..+++..+.-
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 45566777888888888888888888877654 233333 22 2223334455668888888888888877654
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcC-CcCChhhhHhHHHH
Q 043955 396 LVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEAN-VESDSITLVSALSA 471 (835)
Q Consensus 396 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g-~~p~~~t~~~ll~a 471 (835)
...|--|.-|-...+...+|...+..... .|+..|+-+..-|.....+..|-+-|....+.- ..+|.++..++-..
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 44444444444445666777777776543 566777777767777777777777666554421 22444443333222
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 043955 472 ASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAI 548 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al 548 (835)
|.. .+ +.+.... -...+..+.|.+.|..+.. +|...=|.+...++..|++.+|.
T Consensus 610 ~~~------------~l---~~~~rn~--------ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 610 YIQ------------AL---HNPSRNP--------EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHH------------Hh---cccccCh--------HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH
Confidence 211 00 0000000 1134567788888887663 46777788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043955 549 DLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QI 627 (835)
Q Consensus 549 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 627 (835)
.+|.+.++... -+.-+|..+...|...|.+..|++.|+...+.+.-.-+.+...||..++-++|++.+|.+..... ..
T Consensus 667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999988643 33456888889999999999999999988777776667899999999999999999999877655 33
Q ss_pred CC-CHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 628 EP-TAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 628 ~p-~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
.| |+. ..|-.+ ...+.++.+++++| ..+-.+....+..+.|.++...|...+
T Consensus 746 ~p~~~~v~FN~a~----------v~kkla~s~lr~~k------~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 746 APSNTSVKFNLAL----------VLKKLAESILRLEK------RTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred CCccchHHhHHHH----------HHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44 222 222211 12233444444444 223344455555566666666665543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-15 Score=172.79 Aligned_cols=325 Identities=11% Similarity=-0.054 Sum_probs=267.9
Q ss_pred ChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHH
Q 043955 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSY 437 (835)
Q Consensus 361 ~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 437 (835)
+......++..+.+.|+.+.+..++..++...+.+......++......|+.++|...|+++.. | +...|..+...+
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3344566777888999999999999999999998877677777777889999999999999864 3 556788888999
Q ss_pred HhCCChHHHHHHHHHHhhcCCcCCh-hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 438 VHNGLANEALELFYLMNEANVESDS-ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 438 ~~~g~~~~Al~lf~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
.+.|++++|+..|++... +.|+. ..+..+...+...|+.+.|...+..+......+.. .+..+. .+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWL--AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHH-HHHHcCCHHHH
Confidence 999999999999999987 45654 45667778889999999999999888776544333 333333 47889999999
Q ss_pred HHHhhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHH----HHHHHH
Q 043955 517 NKVFNCVQTK----DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINE----GKKFLE 587 (835)
Q Consensus 517 ~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~----a~~~~~ 587 (835)
..+++.+.+. +...+..+...+...|+.++|+..|+++... .|+. ..+..+..++...|+.++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987643 3334555677888999999999999999984 5654 556778888999999986 789998
Q ss_pred HhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 588 IMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 588 ~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
... .+.| +...+..++.+|.+.|++++|...+++. ...|+ +.++..|..++...|+.+.|...++++++.+|++
T Consensus 275 ~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 877 5678 4788999999999999999999999987 55665 4578888888999999999999999999999998
Q ss_pred CCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 665 PGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+..+..++.+|...|++++|.+..+...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 877778899999999999999987765543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-14 Score=161.22 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
.++.+...|...|++++|...|++..+ | +..+|..+...+...|++++|+..|++.... .|+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~------------- 397 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSE------------- 397 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-------------
Confidence 566667777778888888888877653 3 3456777777788888888888888887663 343
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
+..++..+...|...|++++|...|++..+ .+...|..+...+.+.|+.++|+..|
T Consensus 398 ---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 398 ---------------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 223345555666667777777777766542 34556667777777777777777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hh------HHHHHHHHHhhcCCHHHHHHHH
Q 043955 552 YKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PE------HYACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 552 ~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~------~y~~lv~~l~r~g~~~eA~~~~ 622 (835)
++.+. ..|+ ...+..+..++...|++++|...|+... .+.|+ .. .+......+...|++++|.+++
T Consensus 457 ~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 457 RRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77776 3454 3456666667777777777777777655 23332 11 1222223344468888888888
Q ss_pred HhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 623 RSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 623 ~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++. .+.|+.. .|..|...+...|+.+.|...+++++++.+..... ..+..|.++.+++...++
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 775 5666544 67777788888888888888888888887754321 122345566666554444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-13 Score=159.02 Aligned_cols=416 Identities=12% Similarity=0.032 Sum_probs=304.2
Q ss_pred HHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHH---HHHHHhcCChHHH
Q 043955 270 ASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTI---IAGYAQNNCHLKA 346 (835)
Q Consensus 270 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A 346 (835)
...+.|+.+.|...+.++++........++ .++..+...|+.++|...+++...++...+..+ ...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 456789999999999999887533222344 888888899999999999999887654444433 4477788999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--
Q 043955 347 LELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES-- 424 (835)
Q Consensus 347 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-- 424 (835)
+++|+++.+.... +...+..+...+...+..++|.+....+.+..+... .+..++..+...++..+|.+.++++.+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-NYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-HHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999886422 234455667778888999999999888888766533 335556666566777669999988864
Q ss_pred C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHh-----------HHHHh-----hcccc---hhhHHHH
Q 043955 425 K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVS-----------ALSAA-----SSLSI---LKKGKEL 484 (835)
Q Consensus 425 ~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~-----------ll~a~-----~~~~~---~~~a~~i 484 (835)
| +...+..+..+..+.|-...|+++..+- |+-++-.- .+.-- ..... ++.+..-
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 3 4556677888889999999998776653 33222111 11000 01112 2233333
Q ss_pred HHHHHH-hCCCCc--hhHHHHHHH---HHHhcCChhhHHHHhhhCCCCC--hh--HHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 485 NGFIIR-KGFNLE--GSVASSLVD---MYARCGALDIANKVFNCVQTKD--LI--LWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 485 ~~~~~~-~g~~~~--~~~~~~li~---~y~k~g~~~~A~~~f~~~~~~~--~~--~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
.+.+.. -+-.|. +....+.+| ++.+.|+..++.+.|+.+.... +. +--+...+|...+++++|+.+|++.
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 333333 122232 122344444 5568899999999999998542 23 4566889999999999999999999
Q ss_pred HHCC----CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCC----------CCCC---hhHHHHHHHHHhhcCCHH
Q 043955 555 EAES----FAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQ----------LDPW---PEHYACLVDLLGRANHLE 616 (835)
Q Consensus 555 ~~~g----~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------i~p~---~~~y~~lv~~l~r~g~~~ 616 (835)
.... ..|+. .....|..|+..++++++|..+++.+.+.-. -.|+ .+.+..++..+.-.|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7643 12333 3357889999999999999999999986211 1232 456677888899999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 617 EAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 617 eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+|++.++++ ..-| |..++..+....+..|+...|+..++.+..++|++...++.++..+-..|+|.+|.++.+...+.
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999998 4455 67799999999999999999999999999999999999999999999999999998887666553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-13 Score=156.78 Aligned_cols=422 Identities=10% Similarity=0.036 Sum_probs=258.4
Q ss_pred HHHhCCChhHHHHHHhcCCCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH-HH--HHHHhccCCh
Q 043955 204 MYARCGKMTEAAGVLYQLENKDSV---SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTV-NA--VSASGRLGNL 277 (835)
Q Consensus 204 ~y~~~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~l--l~a~~~~~~~ 277 (835)
...+.|+++.|...|++..+.++. ....++..+...|+.++|+..+++.. .|+...+. .+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 356778888888888877653332 13367777777788888888877775 34333222 22 3355566777
Q ss_pred HhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHh--cCChHHHHHHHHHHHH
Q 043955 278 LNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQ--NNCHLKALELFRTVQL 355 (835)
Q Consensus 278 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 355 (835)
+.|.++++.+++.... +..++..|+..|...++.++|.+.++++...+......+..+|.. .++..+|++.++++..
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 7777777777666422 234444555566666666666666666554433322223333333 3333345555555555
Q ss_pred cCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhH--
Q 043955 356 EGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSW-- 430 (835)
Q Consensus 356 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~-- 430 (835)
. .+.+..++..++....+.|-...|.++..+-|. +...-|
T Consensus 198 ~-----------------------------------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 198 L-----------------------------------APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred h-----------------------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 3 333333444444444444444444444443331 000000
Q ss_pred HHHHHHHH---------hCCC---hHHHHHHHHHHhhc-CCcCChhh-----hHhHHHHhhcccchhhHHHHHHHHHHhC
Q 043955 431 TSMISSYV---------HNGL---ANEALELFYLMNEA-NVESDSIT-----LVSALSAASSLSILKKGKELNGFIIRKG 492 (835)
Q Consensus 431 ~~li~~~~---------~~g~---~~~Al~lf~~m~~~-g~~p~~~t-----~~~ll~a~~~~~~~~~a~~i~~~~~~~g 492 (835)
..-+.-.+ ..++ .+.|+.-++.+... +-.|...+ ..--+-+....+....+..-++.+...|
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 00000000 0111 23344444444431 11122111 1123345555666666666666666666
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----
Q 043955 493 FNLEGSVASSLVDMYARCGALDIANKVFNCVQTK---------DLILWTSMINANGLHGRGKVAIDLFYKMEAES----- 558 (835)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g----- 558 (835)
.+....+.-++.++|...+++++|..+|.++... ++.....|.-+|...+++++|..+++++.+.-
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 6666667778888888888888888888876431 22334667888888888888888888888731
Q ss_pred --------CCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043955 559 --------FAPDHIT-FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI 627 (835)
Q Consensus 559 --------~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 627 (835)
..||-.. +..+...+.-.|++.+|++.++.+. ...| +......+.+++...|+..+|++.++.+ ..
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS---STAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 1223333 3445566789999999999999997 5578 7899999999999999999999999877 56
Q ss_pred CCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 628 EPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 628 ~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.|+.. +...+..+....++.+.|+.+.+.+++..|+++..-
T Consensus 480 ~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 480 APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 78654 566677777888999999999999999999998543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.2e-13 Score=131.61 Aligned_cols=330 Identities=15% Similarity=0.111 Sum_probs=233.0
Q ss_pred cchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHh--ccCCchHH-HHHHHHHHHhCCCCCcchHHHH
Q 043955 23 VFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACA--MLKDLDCG-AKIHGLVLKCGYDSTDFIVNSL 99 (835)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a-~~i~~~~~~~g~~~~~~~~~~L 99 (835)
+.+=|.|+.. ..+|....+.-+|++|...|++.+...-..|++.-+ ...++.-+ .+.|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 3455666554 456788889999999999998887766666655433 22333322 22333344444222 2222
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHH
Q 043955 100 VAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLG 179 (835)
Q Consensus 100 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 179 (835)
|.|.+.+ -+|+-.|. +..+|.+||.|.++--..+.|.+++++-.....+.+..+|+.+|.+-+- ..+
T Consensus 191 -----K~G~vAd--L~~E~~PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred -----ccccHHH--HHHhhcCC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 4455544 55666565 7789999999999999999999999999998889999999999987543 344
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHh----cCC----CCCcccHHHHHHHHHcCCChhH-HHHHHH
Q 043955 180 MEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLY----QLE----NKDSVSWNSMLTGFVQNDLYCK-AMQFFR 250 (835)
Q Consensus 180 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~ 250 (835)
+.+..+|+...+.||.+++|+++...++.|+++.|++.+- +|. +|...+|..+|..+.+.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 8999999999999999999999999999999988876553 333 4788888888888888877644 444444
Q ss_pred HHHHC----CCCC----CcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhc
Q 043955 251 ELQGA----GQKP----DQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQM 322 (835)
Q Consensus 251 ~m~~~----g~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 322 (835)
+.+.. .++| |..-|.+.+..|.+..+.+.|.++++...... . |..-|..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~---------- 394 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD---------- 394 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH----------
Confidence 44432 2333 23457788888888888888888887654321 0 0000000
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC
Q 043955 323 TAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS 394 (835)
Q Consensus 323 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 394 (835)
.....-|..+....++....+.-+.+|..|.-.-+-|+..+...+++|....+.++....++...+..|..
T Consensus 395 -~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 395 -QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 00112344566667777888888888888888888889999999999888888888888888888777743
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-13 Score=136.18 Aligned_cols=270 Identities=17% Similarity=0.204 Sum_probs=196.0
Q ss_pred CCCChHhHHHHHHhcCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHH
Q 043955 4 KCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGL 83 (835)
Q Consensus 4 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~ 83 (835)
|.|.+.+ -+|+..| ++..++..||+++++-...+.|.+++.+......+.+..+|+.+|.+-+- ..++++..+
T Consensus 191 K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~E 263 (625)
T KOG4422|consen 191 KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAE 263 (625)
T ss_pred ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHH
Confidence 4455443 4555444 46678999999999999999999999999999889999999999987653 344889999
Q ss_pred HHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhh----c---CCCCCeeeHHHHHHHHHhCCChhH-HHHHHHHHHH--
Q 043955 84 VLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDR----M---GEKEDVVLWNSIISAYSASGQCLE-ALGLFREMQR-- 153 (835)
Q Consensus 84 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~----m---~~~~~~~~~n~li~~~~~~g~~~~-A~~l~~~m~~-- 153 (835)
|+...+.||.+++|++++..++.|+++.|++.+-+ | +..|...+|..+|..+.+.+++.+ |..++.+...
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 99999999999999999999999999888766543 3 666888899999998888888754 3444444332
Q ss_pred --CCCCC----ChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcc
Q 043955 154 --VGLVT----NAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSV 227 (835)
Q Consensus 154 --~g~~p----~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~ 227 (835)
..++| |..-|.+.+..|.+..+.+.|.++++.+.. |-.- ...|.. + ....
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t-g~N~------------~~ig~~------~-----~~~f 399 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT-GDNW------------KFIGPD------Q-----HRNF 399 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc-CCch------------hhcChH------H-----HHHH
Confidence 22333 456677888888888888888888876543 2110 000000 0 0112
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhh
Q 043955 228 SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMD 304 (835)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 304 (835)
-|.-+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.++...+++..++..|...+.....-++.
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 24455666677777888888888888777888888888888888888888888888888887775444433333333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-10 Score=119.11 Aligned_cols=510 Identities=11% Similarity=0.081 Sum_probs=351.1
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC--
Q 043955 146 GLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN-- 223 (835)
Q Consensus 146 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 223 (835)
+++++..+. .|+.+. |=++.....+.+.|+.++...++.-.. + .-|.-+|++..-++.|.++++...+
T Consensus 367 RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAveccp~-s----~dLwlAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECCPQ-S----MDLWLALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhccc-h----HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445554442 344432 344555666666677777777765332 1 3355567777788888888876654
Q ss_pred -CCcccHHHHHHHHHcCCChhHHHHHHHH----HHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCcc--c
Q 043955 224 -KDSVSWNSMLTGFVQNDLYCKAMQFFRE----LQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSD--L 296 (835)
Q Consensus 224 -~d~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~ 296 (835)
.+...|.+-..-=-.+|+.+....++.+ +...|+..+..-+..=..+|-..|..-....|...++..|+... .
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 4667777666555667777777766544 45668888888888888888888888888888888877776533 2
Q ss_pred cccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccc
Q 043955 297 QIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLK 376 (835)
Q Consensus 297 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 376 (835)
.+++.-.+.+.+.+.++-|+.+| ...++- .+.+...+......--..|
T Consensus 517 ~tw~~da~~~~k~~~~~carAVy-------------------------------a~alqv-fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVY-------------------------------AHALQV-FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHH-------------------------------HHHHhh-ccchhHHHHHHHHHHHhcC
Confidence 33444444444444444444444 443332 1122223333333333344
Q ss_pred CchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 043955 377 CMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLM 453 (835)
Q Consensus 377 ~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m 453 (835)
..+....++..++..-+.....+-....-+.+.|++..|+.+++..-+ .+...|-+-+..-..+.++++|..+|.+.
T Consensus 565 t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555555555555555555666666666677777777777666543 24456766677777777778888777777
Q ss_pred hhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-ChhH
Q 043955 454 NEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--K-DLIL 530 (835)
Q Consensus 454 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~ 530 (835)
.. ..|+...|.--+.----++..++|.++++..++. ++.-...|-.+...|-..++++.|+..|..-.+ | .+..
T Consensus 645 r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 645 RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 65 4566655555444445567777777777776664 333356778888889899999999999887654 3 4567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
|-.+...--+.|..-+|..+|++.+.. .|+ ...|...+..=.+.|+.++|........++. | +...|+--|.+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec---p~sg~LWaEaI~l 796 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQEC---PSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccchhHHHHHHh
Confidence 888888888889999999999998874 454 4678888888899999999998887766552 4 46778888888
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 609 LGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
..|.++-..+.+.+++. +-|+.+.-+....+.....++.|..-++++++.+|++..++..+-..+...|.=++-.+|+
T Consensus 797 e~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred ccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999888888888776 4455566666667778889999999999999999999999999999999999999999998
Q ss_pred HHHHcCCCccCCceeEEEECC
Q 043955 689 MRMRGSGLKKTPGSSWIEIGN 709 (835)
Q Consensus 689 ~~m~~~~~~k~~g~s~i~~~~ 709 (835)
++..... +.-|..|+-+..
T Consensus 875 ~~c~~~E--P~hG~~W~avSK 893 (913)
T KOG0495|consen 875 KKCETAE--PTHGELWQAVSK 893 (913)
T ss_pred HHHhccC--CCCCcHHHHHhh
Confidence 8666532 334778876543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-12 Score=141.48 Aligned_cols=542 Identities=14% Similarity=0.071 Sum_probs=282.4
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 043955 44 ETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKE 123 (835)
Q Consensus 44 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 123 (835)
.++-.+...|+.|+.+||.+++..|+..|+.+.|- ++..|.-..+.-+..+++.++.+....++.+.+. . |
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-p 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-P 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C-C
Confidence 45566777788888888888888888888887777 7777777777777777788887777777766554 2 6
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhhcCC-C------hhHHHHHHHHHHH
Q 043955 124 DVVLWNSIISAYSASGQCLEALGLFRE-MQ-------RVGLVTNAYTFVAALQACEDSS-F------ETLGMEIHAATVK 188 (835)
Q Consensus 124 ~~~~~n~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~l~~~~~~ 188 (835)
-..+|+.|..+|.+.||... ++..++ |. ..|+.--..-|...+.+|-..- + ...-+.+++..++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887544 222222 21 1222211222222222221110 0 0111223333333
Q ss_pred hCCCCchhHHHH----HHHHHHh-CCChhHHHHHHhcCCC-CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc
Q 043955 189 SGQNLQVYVANA----LIAMYAR-CGKMTEAAGVLYQLEN-KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQV 262 (835)
Q Consensus 189 ~g~~~~~~~~~~----li~~y~~-~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (835)
.+....+..++. .+.-... ...+++-........+ ++..++.+.+..-.-+|+.+.|..++.+|.+.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 331111111111 1111111 1222333333333333 788888888888888899999999999999999888888
Q ss_pred hHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcC-
Q 043955 263 CTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNN- 341 (835)
Q Consensus 263 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g- 341 (835)
-|..++-+ .++......+.+-|...|+.|+..++..-+-...+.|....+.. .. +....+++-+..-+-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e----~s-q~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE----GS-QLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc----cc-chhhhhhHHHHHHHhccc
Confidence 77777765 67777788888888888999988888776666655444222211 11 11111222222222222
Q ss_pred ---------ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC---chh-HHHHHHHHHHh
Q 043955 342 ---------CHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS---DLV-ILNAIVDVYGK 408 (835)
Q Consensus 342 ---------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~---~~~-~~~~li~~y~k 408 (835)
...-.+..+++..-.|+.-....|.... -....|.-+...++-+.+...-.. +.+ .+..++.-|
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy-- 389 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY-- 389 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH--
Confidence 1222233333333334333332222211 112245555555555554433221 111 333333333
Q ss_pred cCChhhHHHHHHhcCCCCchh-HH--------------HHHHHHHhCCChHHHHHHHHHHhhcCC----cC-------Ch
Q 043955 409 CGNIDYSRNVFESIESKDVVS-WT--------------SMISSYVHNGLANEALELFYLMNEANV----ES-------DS 462 (835)
Q Consensus 409 ~g~~~~A~~~f~~~~~~~~~~-~~--------------~li~~~~~~g~~~~Al~lf~~m~~~g~----~p-------~~ 462 (835)
|.+...+.... ++ -.++-++.+-+...++.-+........ .| -.
T Consensus 390 ----------Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 390 ----------FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred ----------HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 33333221111 11 011111111122222221111111000 00 00
Q ss_pred hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCCh------hHHHHHHH
Q 043955 463 ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDL------ILWTSMIN 536 (835)
Q Consensus 463 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~------~~~~~li~ 536 (835)
-.-..++-+|.+.-+...+.+.-+.....-|. ..|..||+....-..+++|....+++..+|. .-+..+..
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 11233444454444444444333332222222 5677888888888888888888888877644 35777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESF-APD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANH 614 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~-~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 614 (835)
.+.+++...++..++++|.+.-. .|+ ..++--++..-...|..+.-.+.++-+. .+|+.-+ .-++....|.++
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccc
Confidence 88888888888888888876422 232 3456667777777787777777776554 2243321 223444555666
Q ss_pred HHHHHHHHHh
Q 043955 615 LEEAYQFVRS 624 (835)
Q Consensus 615 ~~eA~~~~~~ 624 (835)
...|.+..+.
T Consensus 612 ~s~a~ea~e~ 621 (1088)
T KOG4318|consen 612 QSAAQEAPEP 621 (1088)
T ss_pred hhhhhhcchH
Confidence 6666555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-11 Score=134.62 Aligned_cols=276 Identities=14% Similarity=0.122 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCCc------hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CC-hhhhHhH
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIESKDV------VSWTSMISSYVHNGLANEALELFYLMNEANVE-SD-SITLVSA 468 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~-~~t~~~l 468 (835)
..|..||+........++|..+.+++..+|. .-++.+.+...+.+...++..++.+|.+.-.. |+ ..++--+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 3788999999999999999999999987643 45778888899999999999999999873222 21 3455567
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC------CChhHHHHHHHHHHhcC
Q 043955 469 LSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT------KDLILWTSMINANGLHG 542 (835)
Q Consensus 469 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g 542 (835)
+..-+..|..+.-+++++.+...|+..+ .-|+....+.++...|+++++.... ++...|-.++.-- ...
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke-~td 646 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE-TTD 646 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh-ccc
Confidence 7777888999999999999988887653 3344445577888888888765432 1223333332210 011
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH----------h-hhcCCCCC---------ChhHH
Q 043955 543 RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEI----------M-RCDYQLDP---------WPEHY 602 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~----------m-~~~~~i~p---------~~~~y 602 (835)
..+.+..+-.... -+.+.|.+.++.++.+. + .....+.| +..+.
T Consensus 647 ~~qk~mDls~~iq----------------~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~ 710 (1088)
T KOG4318|consen 647 SPQKTMDLSIPIQ----------------KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKN 710 (1088)
T ss_pred cHHHHHhhcchhH----------------HHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHH
Confidence 2222222211111 12233333333332220 0 00001111 01122
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---chhHHHHHHHHHHhcCCCCCCc---hHHHHHHHH
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHS---NKELGEIVAKKLLELDPGNPGN---YVLISNVFA 676 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~ 676 (835)
.-+...|-++|+++.|..++.++++-|......-|++..+.+. ++..+...-+++-++.|..+.+ |.-.+ ..+
T Consensus 711 dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a-~~a 789 (1088)
T KOG4318|consen 711 DRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYA-FFA 789 (1088)
T ss_pred HHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhH-HHH
Confidence 3367788999999999999999999999998888888887764 4556666677777777654432 22222 344
Q ss_pred hcCCch-HHHHHHHHHHcC
Q 043955 677 ASRKWK-DVEQVRMRMRGS 694 (835)
Q Consensus 677 ~~g~~~-~a~~~~~~m~~~ 694 (835)
.+++.. -|.+.....++.
T Consensus 790 ~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 790 TQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHc
Confidence 455555 455666555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-10 Score=122.62 Aligned_cols=572 Identities=11% Similarity=0.059 Sum_probs=329.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 043955 72 KDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQCLEALGLFR 149 (835)
Q Consensus 72 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 149 (835)
|+++.|..++.++++... .+...|-.|-..|-..|+.+++...+--. -.+.|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 666666666666666542 23445666666666666666666555433 111344556666666666666666666666
Q ss_pred HHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhCCChhHHHHHHhcCCC--
Q 043955 150 EMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANA----LIAMYARCGKMTEAAGVLYQLEN-- 223 (835)
Q Consensus 150 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~~-- 223 (835)
+..+.. +++...+--=...|-+.|+...|..-+.++.......|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 666542 22222222223345555666666666666655544333222222 23445555666777777665543
Q ss_pred C---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHH--HHhCCCccccc
Q 043955 224 K---DSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYA--IKQGFVSDLQI 298 (835)
Q Consensus 224 ~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~--~~~g~~~~~~~ 298 (835)
. +...+|.++..|.+...++.|......+......+|..-+-+- +....-.... +..++.++..+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----------~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----------ERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----------hhccccccccccCCCCCCccchh
Confidence 1 3456778888888888888888888777764344443221000 0000000000 01122333333
Q ss_pred -cchhhhhhhccCChhHHHHHHHhcCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 043955 299 -GNTLMDMYAKCCCVNYMGRVFYQMTA----QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACS 373 (835)
Q Consensus 299 -~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 373 (835)
...+--...+.+...++..-|-.... .++..|.-+..+|.+.|.+.+|+.+|..+......-+.+.|..+-..+-
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 11111122233333333333322211 2455677888899999999999999999988766666777888888888
Q ss_pred cccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCch-----hH-------HHHHHHHHhCC
Q 043955 374 GLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVV-----SW-------TSMISSYVHNG 441 (835)
Q Consensus 374 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-----~~-------~~li~~~~~~g 441 (835)
..+..+.|.+.+..++...+.+..+..+|...|-+.|+.++|.+.+..+..||.. .| --..+.+.+.|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999988889999999999999999999999998766622 12 11234567788
Q ss_pred ChHHHHHHHHHHhhcCCc-----CChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 442 LANEALELFYLMNEANVE-----SDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g~~-----p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
+.++=+..-.+|+....+ |+..-= ..++.++ .+..........++.|-.+.++-...
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~----r~~~~~~--------------~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKK----RRRAIAG--------------TTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHH----HHHhhcc--------------ccccccchhHHHHHHHHhccCchHHh
Confidence 887766666666542211 110000 0011000 00111112222233333333321111
Q ss_pred HHHh--------hhCCCCChhHH----HHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHhcccCcH
Q 043955 517 NKVF--------NCVQTKDLILW----TSMINANGLHGRGKVAIDLFYKMEAESF--APDHI--TF-LALLYACSHSGLI 579 (835)
Q Consensus 517 ~~~f--------~~~~~~~~~~~----~~li~~~~~~g~~~~Al~l~~~m~~~g~--~Pd~~--t~-~~ll~a~~~~g~~ 579 (835)
..-. .....-...-| .-+|..+++.|+.++|+.+...+....+ .++.. ++ ...+.++...+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 1111 11111122223 4567789999999999999999887532 22221 22 2345567789999
Q ss_pred HHHHHHHHHhhhcCCC--CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHhhcCchhHH
Q 043955 580 NEGKKFLEIMRCDYQL--DP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-----EVWCALLGACRVHSNKELG 650 (835)
Q Consensus 580 ~~a~~~~~~m~~~~~i--~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-----~~~~~ll~a~~~~~~~~~a 650 (835)
.+|..+++.|...++. .| ....|+|....+.+.|+---=..++... ...|+. .+++..+-. .+.+.-|
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~---~~s~~~A 759 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFV---NASFKHA 759 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhh---ccchHHH
Confidence 9999999999876443 34 3567887777777777655555555554 222322 233433333 3445668
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 651 EIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...+-+++...|++|-.-.+|+-.|-
T Consensus 760 l~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 760 LQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 88999999999999988877776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-14 Score=145.92 Aligned_cols=211 Identities=17% Similarity=0.130 Sum_probs=112.3
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ--TKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
++.+.+.+.+..+...+-. ++..+..++.. ...+++++|.+++...- .++...|..++..+...|+++++.+++++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444433333222 33345556665 57788888888887654 35677888899999999999999999999
Q ss_pred HHHCCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCC
Q 043955 554 MEAESF-APDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--QIEP 629 (835)
Q Consensus 554 m~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p 629 (835)
.....- +++...|..+...+.+.|+.++|.+.++... ...|+ ......++.++...|+.++|.+.++.. ..++
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al---~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL---ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 876432 3455567777778889999999999999887 55784 788888999999999999988888766 2244
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
|+..|..+..++...|+.+.|...++++++.+|+|+.....++.++...|+.++|.++|+..
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66789999999999999999999999999999999999999999999999999999998754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-08 Score=102.46 Aligned_cols=491 Identities=13% Similarity=0.102 Sum_probs=292.3
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC--CCCCeeeHHHHHHHHHhCCChhHH
Q 043955 67 ACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG--EKEDVVLWNSIISAYSASGQCLEA 144 (835)
Q Consensus 67 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~n~li~~~~~~g~~~~A 144 (835)
+.....+.+.|+.++...++.- +.+. -|.-+|++...++.|.+++++.. .+.+...|.+-...=-.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3334445555666665555432 1122 23445566666777888877662 223566676666666677777777
Q ss_pred HHHHHH----HHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChhHHHHHH
Q 043955 145 LGLFRE----MQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQ--VYVANALIAMYARCGKMTEAAGVL 218 (835)
Q Consensus 145 ~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f 218 (835)
..++.+ +...|+..|...+..=..+|-..|..-.+..|...++.-|++.. -.+|+.--+.|.+.+.++-|+.+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 766654 34567777777777767777777777777777777777776542 345666666777777777777777
Q ss_pred hcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHhHHHHHHHHHHhCCCc
Q 043955 219 YQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQ-VCTVNAVSASGRLGNLLNGKELHAYAIKQGFVS 294 (835)
Q Consensus 219 ~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 294 (835)
....+ .+...|......--..|..++-..+|++.... .|.. ..+....+-.-..|+...++.++..+.+...
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-- 615 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-- 615 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--
Confidence 65543 24455666555555566666666666666553 2221 1222222222333444444444444433321
Q ss_pred cccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 043955 295 DLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSG 374 (835)
Q Consensus 295 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 374 (835)
.+...|-+-+..-..+..++.|..+|.+.... .|+...|..-...---
T Consensus 616 ------------------------------nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 616 ------------------------------NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred ------------------------------CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 13345666666666666677777776665542 3444333333222223
Q ss_pred ccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHh
Q 043955 375 LKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 375 ~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~ 454 (835)
.++.+++.++++..++.-+.-.-+ |-.+.+.+-+.++.+.|.+.|..-.
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl-------------------------------~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKL-------------------------------WLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHH-------------------------------HHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444433322223 3334444555555555555554333
Q ss_pred hcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHH
Q 043955 455 EANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILW 531 (835)
Q Consensus 455 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~ 531 (835)
+ .-|+.. ..|-.|.+.=-|.|.+-.|+.+|++.. .+|...|
T Consensus 713 k--~cP~~i----------------------------------pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 713 K--KCPNSI----------------------------------PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred c--cCCCCc----------------------------------hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence 2 223322 234444555556677777777777654 2366788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh
Q 043955 532 TSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR 611 (835)
Q Consensus 532 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r 611 (835)
-..|..-.++|+.+.|..+..+.+++ .+.+...|.--|.-.-+.++-......+. ..+-|+...-.+..++-.
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHH
Confidence 88888888888888888888887774 34444566666655555555333333332 223345556667778888
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 612 ANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 612 ~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
..++++|.+.|.+. ...||.. +|.-+..-...||+-+.-..++.+...-+|.....|...|
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 88999999998887 7778765 8988988899999999999999999999998876665554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-10 Score=127.92 Aligned_cols=333 Identities=14% Similarity=0.113 Sum_probs=217.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHH
Q 043955 340 NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVF 419 (835)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f 419 (835)
.|+.++|..++.+..+.. +-+...|..+-..+...|+.+.+...+-.+.-..+.+...|..+.+...+.|.++.|+-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 377788888877777653 3345567777777777777777776666666666666667777777777777777777777
Q ss_pred HhcCCCCchhHHH---HHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCc
Q 043955 420 ESIESKDVVSWTS---MISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLE 496 (835)
Q Consensus 420 ~~~~~~~~~~~~~---li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 496 (835)
.+..+.++.-|-. -+..|-+.|+...|+.-|.++..... |... .++++.+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~------------------er~~d~i-------- 283 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDI------------------ERIEDLI-------- 283 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhH------------------HHHHHHH--------
Confidence 7766544433433 34566777777777777777766321 1111 0111100
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-----
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQT--K---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITF----- 566 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~----- 566 (835)
--.+..|-..++-+.|.+.++.... . +...+|.++..|.....++.|+.....+......||..-|
T Consensus 284 ----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 284 ----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 0112333334444555555544332 1 2334566666666666777777766666652222222111
Q ss_pred -----------------H---HHHHHhcccCcHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 567 -----------------L---ALLYACSHSGLINEGKKFLEIMRCDYQLDP--WPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 567 -----------------~---~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
. .-+..|...=+..+..+.+......+...| +++.|.-++++|-+.|++.+|+.++..
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 0 122333322222233333333333445445 588999999999999999999999998
Q ss_pred C---CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCc
Q 043955 625 M---QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 625 m---~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 701 (835)
. |-.-+..+|--+...+...|..+.|...+++++.++|++..+-+.|+.+|...|+.++|.++...|-.-+-++.++
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 8 3233567999999999999999999999999999999999999999999999999999999998777556566677
Q ss_pred eeE
Q 043955 702 SSW 704 (835)
Q Consensus 702 ~s~ 704 (835)
|+|
T Consensus 520 ~a~ 522 (895)
T KOG2076|consen 520 CAW 522 (895)
T ss_pred ccc
Confidence 776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-11 Score=118.96 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCC-hhhhHhHHHHhhcccchhhH
Q 043955 406 YGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESD-SITLVSALSAASSLSILKKG 481 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 481 (835)
|-+.|++++|...|-.+.. .+....--+.+.|-...++.+|++++.+... +.|+ +..++-+-..+-+.|+-.+|
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhh
Confidence 4456666666666654432 3333344445556666666666666654433 3333 22233333333344444444
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhC--CCCChhHHHHHHHHH-HhcCChHHHHHHHHHHH
Q 043955 482 KELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCV--QTKDLILWTSMINAN-GLHGRGKVAIDLFYKME 555 (835)
Q Consensus 482 ~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~--~~~~~~~~~~li~~~-~~~g~~~~Al~l~~~m~ 555 (835)
.+.|-.--+ -|+.+..+...|...|....-.+.|..+|++. .+|+.+-|..||..| .+.|++++|+++|++.-
T Consensus 612 fq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 612 FQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 443322211 12333444444444444444444444444432 234444444444332 23344444444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-11 Score=128.98 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=127.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHH
Q 043955 525 TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHY 602 (835)
Q Consensus 525 ~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y 602 (835)
+..+.+|-++...|.-.++.+.|++.|++..+ +.| ...+|+.+..=......+|.|..+|+... ++.|+ -..|
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rhYnAw 492 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRHYNAW 492 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchhhHHH
Confidence 34677888888888888888888888888887 677 45677777666677778888888888654 44442 2333
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
--++-.|.+.++++.|+-.|+++ .+.|... +...+.......|+.|.|...+++++-+||.|+-.-+..+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 34566788888888888888887 7888544 555566667777888888888888888888888888888888888888
Q ss_pred chHHHHHHHHHHc
Q 043955 681 WKDVEQVRMRMRG 693 (835)
Q Consensus 681 ~~~a~~~~~~m~~ 693 (835)
+++|..+.+.+++
T Consensus 573 ~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 573 YVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888888886
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-10 Score=115.54 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=150.4
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.|+++.|.+.+...+.+.-.-....+| +.-.|-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 456666666666555443222222222 2234667899999999887654 456777777888888888999999998
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043955 552 YKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIE 628 (835)
Q Consensus 552 ~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 628 (835)
-+... +-|+. ..+.-|...|-+.|+-.+|.+++- ..|..-| +.++..-+..-|....-+++|+..+++. -+.
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~y---dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHY---DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhh---hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 77765 66655 456666677888999988888765 3455667 6888888888888888899999999988 678
Q ss_pred CCHHHHHHHHHHH-hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCc
Q 043955 629 PTAEVWCALLGAC-RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKW 681 (835)
Q Consensus 629 p~~~~~~~ll~a~-~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 681 (835)
|+.+-|.-++..| |..||...|...++.+-..-|+|......|..+....|.-
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999888766 6779999999999999999999988888888877766643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=126.82 Aligned_cols=151 Identities=10% Similarity=0.025 Sum_probs=73.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCH
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHL 615 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~ 615 (835)
+.....++.|...|+..+. +.|.+ -.|.++...+.+.+..+.|.-.|+... .|.| +.....|++..+-+.|+.
T Consensus 465 ~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred hhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhh
Confidence 3333444444444444443 34433 234455555555555555555555443 4555 344444555555555555
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 616 EEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+|+++++++ -++| |+..--.-.......++.+.|...+|++.++-|+++..|.+|+.+|-..|+.+.|..-...|-+
T Consensus 540 d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5555555555 2333 1111111111222334555555555555555555555555555555555555555555544443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-08 Score=106.28 Aligned_cols=660 Identities=14% Similarity=0.171 Sum_probs=364.4
Q ss_pred CCChHhHHHHHHhcCC---CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHH
Q 043955 5 CGSVLDAEQLFDKVSQ---RTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIH 81 (835)
Q Consensus 5 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~ 81 (835)
.|++++|-++-...|+ +++.+-|.+=+.=...|.+..-+..|..+...| +.|..--.-+.+--...++.+...+.+
T Consensus 373 qG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl 451 (1666)
T KOG0985|consen 373 QGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWL 451 (1666)
T ss_pred CccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 4677777777766665 466666666655566777777777887777776 444432222333223333333322222
Q ss_pred HH-----HHHhC--CCC-C----cc------hHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhH
Q 043955 82 GL-----VLKCG--YDS-T----DF------IVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLE 143 (835)
Q Consensus 82 ~~-----~~~~g--~~~-~----~~------~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~ 143 (835)
.+ -.+.| +.| | .. +-+..+..|+.+|.++++.-...+.+..|| |-.+|+...+ -.++.
T Consensus 452 ~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~ 527 (1666)
T KOG0985|consen 452 KEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQ 527 (1666)
T ss_pred hhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhH
Confidence 11 01112 111 1 01 123445566666666666666666655555 4456666666 56788
Q ss_pred HHHHHHHHHHCC-CCCChhhH--------------HHHHHHhhcCCChhHH---HHHHHHHHHhCCC----------Cch
Q 043955 144 ALGLFREMQRVG-LVTNAYTF--------------VAALQACEDSSFETLG---MEIHAATVKSGQN----------LQV 195 (835)
Q Consensus 144 A~~l~~~m~~~g-~~p~~~t~--------------~~ll~a~~~~~~~~~a---~~l~~~~~~~g~~----------~~~ 195 (835)
+.++...|.+.. ...|.... +.+|.++ +....+.+ -++++.-...+++ ...
T Consensus 528 ~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaL-K~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtH 606 (1666)
T KOG0985|consen 528 ALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDAL-KLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTH 606 (1666)
T ss_pred HHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHh-cCCChhhhhHHHHHHHHHhccchHHHHHHHhcccccc
Confidence 888777776632 22222211 1122222 11222221 2233333332221 112
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHhcCCC-CCcccHHHH-----HHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043955 196 YVANALIAMYARCGKMTEAAGVLYQLEN-KDSVSWNSM-----LTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVS 269 (835)
Q Consensus 196 ~~~~~li~~y~~~g~~~~A~~~f~~~~~-~d~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 269 (835)
+-+..+.+.|.+.|-...|.+.+..+.. +-.+..+.+ +..|.-.-.++.+++.++.|...+++-|..+...+..
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2245667788899999999988877654 111111111 2344445568889999999998888888776666655
Q ss_pred HHhccCChHhHHHHHHHHHH-----------hCCCccccccchhhhhhhccCChhHHHHHHHhcCC--------------
Q 043955 270 ASGRLGNLLNGKELHAYAIK-----------QGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTA-------------- 324 (835)
Q Consensus 270 a~~~~~~~~~a~~i~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------------- 324 (835)
-|...-..+.-.++|+.... .++..|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 55444333344444443322 13556777777888899999988888887654321
Q ss_pred -C----------------CcccH------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH-------------H
Q 043955 325 -Q----------------DFISW------TTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGS-------------V 368 (835)
Q Consensus 325 -~----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------------l 368 (835)
. |.+.| ...|..|++.=++...-.+...++. +..+....-. +
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD--~dC~E~~ik~Li~~v~gq~~~deL 844 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD--VDCSEDFIKNLILSVRGQFPVDEL 844 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc--CCCcHHHHHHHHHHHhccCChHHH
Confidence 0 11111 1233444443332222222221111 1111111111 2
Q ss_pred HHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChh-----------------------------------
Q 043955 369 LMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNID----------------------------------- 413 (835)
Q Consensus 369 l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~----------------------------------- 413 (835)
..-+.+.+++..-...++..+..|..+..++|+|...|..+++-.
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 222344455555556666777777777777777777775433211
Q ss_pred -----------------------------hHHHHH-----------Hhc-----C-CCCchhHHHHHHHHHhCCChHHHH
Q 043955 414 -----------------------------YSRNVF-----------ESI-----E-SKDVVSWTSMISSYVHNGLANEAL 447 (835)
Q Consensus 414 -----------------------------~A~~~f-----------~~~-----~-~~~~~~~~~li~~~~~~g~~~~Al 447 (835)
--.+++ ++. + ..|+..-+.-+.++...+.+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 101111 100 0 013333444556667777777777
Q ss_pred HHHHHHhhcCCcCChhhhHhHHHHhhcccchh-hHHHHHHHHHHh--------------------------CCCCchhHH
Q 043955 448 ELFYLMNEANVESDSITLVSALSAASSLSILK-KGKELNGFIIRK--------------------------GFNLEGSVA 500 (835)
Q Consensus 448 ~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~~i~~~~~~~--------------------------g~~~~~~~~ 500 (835)
+++++..- .|+.++=+.-|....-+...+ .-..+.+++.+. .++.+....
T Consensus 1005 ELLEKIvL---~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1005 ELLEKIVL---DNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHhc---CCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 77777653 222222111111100000000 001112222221 112222222
Q ss_pred HHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH
Q 043955 501 SSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLIN 580 (835)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~ 580 (835)
+.||+ .-|+++.|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 22222 2344444444444433 3457999999999999999999988543 24567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhc
Q 043955 581 EGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 660 (835)
+-.+++...+++ .-+|.++ +.++-+|++.+++.|-++|+. -|+..-......-|...|..+.|+..+.
T Consensus 1151 dLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~----- 1218 (1666)
T KOG0985|consen 1151 DLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS----- 1218 (1666)
T ss_pred HHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH-----
Confidence 999999877655 5567655 468999999999999999985 4777777888899999999999888876
Q ss_pred CCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCc
Q 043955 661 DPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 661 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 701 (835)
+...|..|+..+...|.+..|...-++......-|+-+
T Consensus 1219 ---~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1219 ---NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 45678888998999999988876544444333333333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-10 Score=124.37 Aligned_cols=254 Identities=13% Similarity=0.026 Sum_probs=161.5
Q ss_pred ccccCchHHHHHHHHHHHhCCCchh-HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHH
Q 043955 373 SGLKCMSQTKEIHGYIIRKGLSDLV-ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALE 448 (835)
Q Consensus 373 ~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~ 448 (835)
...|+.+.+.+.+..+.+..+++.. ........+...|+.+.|...++.+.+ .++.....+...|.+.|++++|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4445555555555555444333322 222335667777788888777777654 245556677777888888888888
Q ss_pred HHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---
Q 043955 449 LFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--- 525 (835)
Q Consensus 449 lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--- 525 (835)
++..+.+.+..++. ....+- ...+..++....+..+.+...++++.++.
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 88888776543221 110000 00111222222233344555556665542
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHH
Q 043955 526 KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYAC 604 (835)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~ 604 (835)
+++..+..+..++...|+.++|.+++++..+ ..||... .++.+....|+.+++.+..+...+. .| +++.+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~ 333 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWST 333 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHH
Confidence 4667777788888888888888888888877 3444421 1233333457888888888777744 46 4666778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELD 661 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 661 (835)
++.++.+.|++++|.+.++.+ ...|+...+..|..++...|+.+.|...+++.+.+-
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888888888888888877 677888877777788888888888888888887764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-10 Score=120.72 Aligned_cols=290 Identities=11% Similarity=0.006 Sum_probs=180.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHhccccCchHHHHHHHHHHHhCCCchh-HHHHHHHHHHhcCChhhH
Q 043955 338 AQNNCHLKALELFRTVQLEGLDADVMI-IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLV-ILNAIVDVYGKCGNIDYS 415 (835)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A 415 (835)
...|+++.|.+.+.+..+. .|++.. +.....+....|+.+.+.+.+....+..+.+.. +.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578889998888776554 344333 233344566667888888877777766554432 555557777777777777
Q ss_pred HHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhC
Q 043955 416 RNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKG 492 (835)
Q Consensus 416 ~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 492 (835)
...++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.+.. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 777777654 2 4455666777777777777777777777776532221 1100000
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---
Q 043955 493 FNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITF--- 566 (835)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~--- 566 (835)
..+..+++.-......+...+.++..+. +++..+..++..+...|+.++|++++++..+ ..||....
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhH
Confidence 0011111111122233444555555553 4778888888999999999999999999888 45665421
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHhh
Q 043955 567 LALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRS--M-QIEPTAEVWCALLGACRV 643 (835)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~a~~~ 643 (835)
..........++.+.+.+.++...+...-+|+.....+++.++.+.|++++|.+.++. + ...||+.++..|...+..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111222334667777777776664433333325566777777788888888887773 3 556777776677777777
Q ss_pred cCchhHHHHHHHHHHh
Q 043955 644 HSNKELGEIVAKKLLE 659 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~ 659 (835)
.|+.+.|...+++.+.
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-10 Score=114.51 Aligned_cols=208 Identities=19% Similarity=0.175 Sum_probs=171.4
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFY 552 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~ 552 (835)
|+.-.+.+-++.+++....++. .|--+..+|....+.++-...|+... ..|..+|..-...+.-.+++++|+.=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777776544332 25556677999999999999998765 3477788888888888899999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043955 553 KMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP 629 (835)
Q Consensus 553 ~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 629 (835)
+.+. +.|+. ..|.-+-.+..+.+.+++....|+..++++ | .++.|+-...+|...+++++|.+.++.. .++|
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 9998 78876 468888888889999999999999998765 6 4889999999999999999999999876 5666
Q ss_pred C---------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 630 T---------AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 630 ~---------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
+ +.+-.+++-.-++ +|+..|+...++++++||....+|..|+.+-...|+.++|.++.+.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5 3344555544333 8999999999999999999999999999999999999999998764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-09 Score=106.12 Aligned_cols=334 Identities=14% Similarity=0.138 Sum_probs=227.6
Q ss_pred hhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH--HHHHHHhccccCchHHH
Q 043955 305 MYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMII--GSVLMACSGLKCMSQTK 382 (835)
Q Consensus 305 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~~~ 382 (835)
.+-+.|....|+..|.....+-+..|.+-+...--..+.+.+..+- .|...|...+ -.+..++......+.+.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~a~~el~q~~e~~ 247 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKKAYQELHQHEEAL 247 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777776666655555555444332222222222211 1112111111 22334555566677777
Q ss_pred HHHHHHHHhCCCchh-HHHHHHHHHHhcCChhhHHHHHHhcCCC------CchhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 043955 383 EIHGYIIRKGLSDLV-ILNAIVDVYGKCGNIDYSRNVFESIESK------DVVSWTSMISSYVHNGLANEALELFYLMNE 455 (835)
Q Consensus 383 ~i~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~Al~lf~~m~~ 455 (835)
+-.......|++... +-+.....+-...++|.|..+|+++... |..+|+-.+ |+++.+.. +..+.+-..
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk--Ls~LA~~v~ 323 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK--LSYLAQNVS 323 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH--HHHHHHHHH
Confidence 777778888887555 5555566666778889999999888754 445555443 44444332 222222211
Q ss_pred --cCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhH
Q 043955 456 --ANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLIL 530 (835)
Q Consensus 456 --~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~ 530 (835)
...+|. +...+.+.|+-.++-+.|...|++..+ +-...
T Consensus 324 ~idKyR~E-------------------------------------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a 366 (559)
T KOG1155|consen 324 NIDKYRPE-------------------------------------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA 366 (559)
T ss_pred HhccCCcc-------------------------------------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH
Confidence 123332 223345566677778888888887664 34568
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
|+-|..-|....+...|++-+++.++ +.| |...|.++..+|.-.++..-|+-+|+... .+.| |...|..|+++
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGEC 441 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHH
Confidence 99999999999999999999999988 666 55789999999999999999999998776 7788 68899999999
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHh-------cCCCCCCchHHHHHHHHhcC
Q 043955 609 LGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE-------LDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g 679 (835)
|.+-++++||++.+++. .-+.+..++..|...+...++.+.|...+++-++ .+|+-..+-.-|++-+.+.+
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~ 521 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMK 521 (559)
T ss_pred HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhc
Confidence 99999999999999988 2233446788888999999999999999999887 44544555677999999999
Q ss_pred CchHHHHHHH
Q 043955 680 KWKDVEQVRM 689 (835)
Q Consensus 680 ~~~~a~~~~~ 689 (835)
+|++|...-.
T Consensus 522 ~~~~As~Ya~ 531 (559)
T KOG1155|consen 522 DFDEASYYAT 531 (559)
T ss_pred chHHHHHHHH
Confidence 9999987653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-08 Score=98.17 Aligned_cols=479 Identities=12% Similarity=0.076 Sum_probs=343.6
Q ss_pred hCCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHhHHH
Q 043955 207 RCGKMTEAAGVLYQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQV-CTVNAVSASGRLGNLLNGKE 282 (835)
Q Consensus 207 ~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~ 282 (835)
..+++..|+.+|++... ++...|--.+..=.++.....|..++++.... .|-.. .+---+..=..+|++..+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 35667788888887765 56777888888888888888888888887763 33322 22223333455788999999
Q ss_pred HHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhc--CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc-C-C
Q 043955 283 LHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQM--TAQDFISWTTIIAGYAQNNCHLKALELFRTVQLE-G-L 358 (835)
Q Consensus 283 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~ 358 (835)
+|..-.+. .|+...|++.|++=.+-..++.|+.++++. ..|++.+|--...-=.++|+...|..+|...... | -
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99887764 789999999999999999999999999885 4678888888888888899998888888877653 1 1
Q ss_pred CCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc--hhHHHHHHHHHHhcCChhhHHHH--------HHhcCCC---
Q 043955 359 DADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD--LVILNAIVDVYGKCGNIDYSRNV--------FESIESK--- 425 (835)
Q Consensus 359 ~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A~~~--------f~~~~~~--- 425 (835)
.-+...|.++..--.+....+.++-++...+..-+.+ ..++..+...--+-|+....... ++.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1122233333333345677889999999999988865 33777777777777775443332 2333333
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh-------hhhHhHHHHh---hcccchhhHHHHHHHHHHhCCCC
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS-------ITLVSALSAA---SSLSILKKGKELNGFIIRKGFNL 495 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~~ 495 (835)
|-.+|--.+..-...|+.+...++|.+.... ++|-. ..|.-+=-+| ..+.+.+.+++++...++ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 5567777777777889999999999999874 55532 1222222222 346788999999999888 3444
Q ss_pred chhHHHHHHHHHH----hcCChhhHHHHhhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 043955 496 EGSVASSLVDMYA----RCGALDIANKVFNCVQ--TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLA 568 (835)
Q Consensus 496 ~~~~~~~li~~y~----k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ 568 (835)
..+++.-+=-||+ ++-++..|++++.... .|-.-++...|..-.+.++++....+|++.++ ..|.. .+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHH
Confidence 5666666655665 6789999999998765 46667888888888999999999999999998 56654 67776
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHh-----
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACR----- 642 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~----- 642 (835)
...-=...|+.|.|+.+|+-......++...-.+-..+|.=...|.++.|..++++. .-.+...+|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 666667789999999999988765444444556788889889999999999999988 44455568988773322
Q ss_pred hcC-----------chhHHHHHHHHHHhc----CCCCCCc--hHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 643 VHS-----------NKELGEIVAKKLLEL----DPGNPGN--YVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 643 ~~~-----------~~~~a~~~~~~~~~l----~p~~~~~--~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+ ++..|..+++++... +|..... .-..-|+=...|.-++...|.++|.+
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 334 567788888877643 4432222 22334566677888888888887743
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-10 Score=121.05 Aligned_cols=282 Identities=9% Similarity=-0.006 Sum_probs=200.3
Q ss_pred hccCChhHHHHHHHhcCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHhccccCchHH
Q 043955 307 AKCCCVNYMGRVFYQMTAQD---FISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVM--IIGSVLMACSGLKCMSQT 381 (835)
Q Consensus 307 ~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~~ 381 (835)
...|+++.|.+.+.+..+.. ...+-.....+.+.|+++.|...+.+..+.. |+.. .-..........++++.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45799999999998876542 2233444566778899999999999987643 5543 333346667789999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---chhHHHH----HHHHHhCCChHHHHHHHHHHh
Q 043955 382 KEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKD---VVSWTSM----ISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 382 ~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~l----i~~~~~~g~~~~Al~lf~~m~ 454 (835)
...+..+.+..+.+..+...+...|...|++++|.+.+..+.+.. ...+..+ ..+....+..+++.+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999888899999999999999999999999887542 2222111 111122222222222333332
Q ss_pred hcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC--ChhH--
Q 043955 455 EANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK--DLIL-- 530 (835)
Q Consensus 455 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~-- 530 (835)
... |+ ....++..+..++..+..+|+.++|.+++++..++ |...
T Consensus 253 ~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 253 KNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred HHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 211 10 01235667778888888999999999999887653 3221
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--H-HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHH
Q 043955 531 -WTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI--T-FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLV 606 (835)
Q Consensus 531 -~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~--t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 606 (835)
+..........++.+.+++.+++..+ ..|+.. . ..++...|.+.|++++|.++|+... .+...|+.+.+..+.
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La 377 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAA 377 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHH
Confidence 12222233345788899999999887 577776 4 4577888999999999999999432 125689988899999
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 043955 607 DLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m 625 (835)
.++.+.|+.++|.+++++.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-09 Score=114.04 Aligned_cols=273 Identities=9% Similarity=0.045 Sum_probs=182.0
Q ss_pred cCChhhHHHHHHhcCCC--Cch-hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhH--hHHHHhhcccchhhHHH
Q 043955 409 CGNIDYSRNVFESIESK--DVV-SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLV--SALSAASSLSILKKGKE 483 (835)
Q Consensus 409 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 483 (835)
.|+++.|++.+...++. ++. .+-.......+.|++++|.+.|.++.+ ..|+..... .........|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544432 111 121112223556666666666666654 334443222 11234455566666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCCh-----------hHHHHHHHHHHhcCChHHHHHHHH
Q 043955 484 LNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDL-----------ILWTSMINANGLHGRGKVAIDLFY 552 (835)
Q Consensus 484 i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-----------~~~~~li~~~~~~g~~~~Al~l~~ 552 (835)
..+.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665554 33566777788888888888888888887764321 134444444445555666666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 043955 553 KMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT- 630 (835)
Q Consensus 553 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~- 630 (835)
..... .+.+......+..++...|+.++|.+.++...+ ..|+.... ++......|+.+++.+.+++. .-.|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 344666778888999999999999999987764 34554322 122222459999999999887 55564
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
+..+.++...|...++.+.|+..++++++.+|++ ..|..|+.++...|+-++|.+.++.-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788889999999999999999999999986 44789999999999999999988754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-08 Score=103.51 Aligned_cols=351 Identities=12% Similarity=0.058 Sum_probs=236.9
Q ss_pred CCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHH-HHHHHH
Q 043955 359 DADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWT-SMISSY 437 (835)
Q Consensus 359 ~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~-~li~~~ 437 (835)
.-|.+.+-..--..-..+....|...+-.++..-+-. |.+-+..-.-+.+.+.+..+-...+..+...-. -+..+|
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~---W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWF---WSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcc---hHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 3343333333333445555566665555554433322 223333222333444444443333332211111 133455
Q ss_pred HhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh-hcccchhhHHHHHHHHHHhCC-C-CchhHHHHHHHHHHhcCChh
Q 043955 438 VHNGLANEALELFYLMNEANVESDSITLVSALSAA-SSLSILKKGKELNGFIIRKGF-N-LEGSVASSLVDMYARCGALD 514 (835)
Q Consensus 438 ~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~-~-~~~~~~~~li~~y~k~g~~~ 514 (835)
-...+.+++++-.......|+. +..-+.+.+.++ -...++++|..+++.+.+... . -|..+|+.++-.-..+.++.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 5556778888888877777653 333333444444 456788999999999888732 1 24566665553333333333
Q ss_pred h-HHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhc
Q 043955 515 I-ANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 515 ~-A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
- |..++ .+.+=.+.|-..+.+-|+..++.++|+..|++.++ +.|.. ..|+.+..-+....+...|.+-++...
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-- 391 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-- 391 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH--
Confidence 2 33333 23333455666677888899999999999999998 67776 467778888999999999999999887
Q ss_pred CCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 593 YQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 593 ~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
.|.| |-..|-.++.+|.-.+...=|+=+++++ .++| |+.+|.+|...+.+-++.+.|+..+++++...-.+..+|+
T Consensus 392 -di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 392 -DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred -hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 7889 6888999999999999999999999998 7788 7789999999999999999999999999999998999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
.|+++|-..++.++|....++--+.- +..| .-.|...++...|.+...++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~----------~~eg---------~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVS----------ELEG---------EIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH----------Hhhc---------ccchHHHHHHHHHHHHHHhh
Confidence 99999999999999998876543310 0000 12355566666777776666
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-10 Score=112.34 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=165.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA 572 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a 572 (835)
....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|++.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677888999999999999999987653 356788999999999999999999999998842 2344567777888
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a 650 (835)
+...|++++|.++|+..............+..+..++.+.|++++|.+.+++. ...| +...|..+...+...|+.+.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999988754222224567888999999999999999999887 4455 455788888889999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 651 EIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...+++++++.|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999889999999999999999999998877664
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-08 Score=104.66 Aligned_cols=194 Identities=14% Similarity=0.066 Sum_probs=157.7
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALL 570 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll 570 (835)
+..+..|-++.-.|.-.|+.++|++.|.+...- =-..|-.....|+-.|..++|+..+...-+. ++-...-+.-+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 344566777777888889999999999876643 3468999999999999999999999988773 222333445556
Q ss_pred HHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC------C-CHHHHHHHHHH
Q 043955 571 YACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM--QIE------P-TAEVWCALLGA 640 (835)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~------p-~~~~~~~ll~a 640 (835)
.-|.+.+..+.|.++|.... +|.| ++-.+.-++-+....+.+.+|...++.. +++ + -..+|+.|..+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 66888999999999998776 8888 5777777777778888999999888765 221 1 12357888899
Q ss_pred HhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 641 CRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 641 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
||+.+..+.|+..+++++.+.|.++.+|..++-+|.-.|+.+.|.....+.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=88.85 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 043955 526 KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSH 575 (835)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 575 (835)
||+++||++|.+|+++|+.++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-11 Score=124.53 Aligned_cols=251 Identities=15% Similarity=0.171 Sum_probs=97.3
Q ss_pred HHHHHHhcCChhhHHHHHHhc-C----CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhccc
Q 043955 402 IVDVYGKCGNIDYSRNVFESI-E----SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLS 476 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~ 476 (835)
+..++.+.|++++|.+++++. . ..|+.-|..+.......+++++|++.++++...+.. +...+..++.- ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355555666666666666322 1 123444444444455566666666666666553322 22233333333 4555
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 477 ILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ-----TKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 477 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
+++.|.++.....+.. +++..+..++..|.+.|+.+++.++++.+. +.+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666655554443322 344455667777778888888888877643 346677888888888888888899888
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043955 552 YKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP 629 (835)
Q Consensus 552 ~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 629 (835)
++.++ ..|+. .....++..+...|+.+++.+.++...+.. .+++..+..++.++...|+.++|+..+++. ...|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 88888 67764 456677888888888888888888776553 234566777888888888999999888887 4445
Q ss_pred -CHHHHHHHHHHHhhcCchhHHHHHHHHHHhc
Q 043955 630 -TAEVWCALLGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 630 -~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 660 (835)
|+.+...+..+....|+.+.|..+.+++++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 6667777888888889999888888877653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-11 Score=88.13 Aligned_cols=50 Identities=36% Similarity=0.645 Sum_probs=48.1
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 043955 123 EDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACED 172 (835)
Q Consensus 123 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 172 (835)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999864
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-05 Score=85.56 Aligned_cols=509 Identities=13% Similarity=0.145 Sum_probs=305.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhc----CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043955 93 DFIVNSLVAMYAKCYDFRKARQLFDRM----GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQ 168 (835)
Q Consensus 93 ~~~~~~Li~~y~~~g~~~~A~~~f~~m----~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 168 (835)
+.+|-.-+....+.|++...+..|++. |.......|...|.-....|-++-++.+|++..+. .|. .-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 456777777888899999999999975 55456678999999999999999999999999864 333 2455567
Q ss_pred HhhcCCChhHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhCCCh---hHHHHHHhcCCCC--C--cccHHHHHHH
Q 043955 169 ACEDSSFETLGMEIHAATVKS------GQNLQVYVANALIAMYARCGKM---TEAAGVLYQLENK--D--SVSWNSMLTG 235 (835)
Q Consensus 169 a~~~~~~~~~a~~l~~~~~~~------g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~--d--~~~~~~li~~ 235 (835)
-++..++++++.+.+..++.. ....+-..|.-+-+..++..+. -....+++.+..+ | -..|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 778889999999888877642 2244566777777777665443 2334455555442 3 3479999999
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHH
Q 043955 236 FVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYM 315 (835)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 315 (835)
|.+.|.+++|.++|++-... ..+..-|..+..+|+.......+..+- .....+..+. -.-+++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHH
Confidence 99999999999999987764 233445666777766543222211111 0000111110 01123333
Q ss_pred HHHHHhcCCC---------------CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchH
Q 043955 316 GRVFYQMTAQ---------------DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQ 380 (835)
Q Consensus 316 ~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 380 (835)
..-|+.+..+ ++..|..-+.. ..|+..+-...|.+..+. +.|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka----------------- 382 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKA----------------- 382 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccC-----------------
Confidence 4444444332 33344333322 245555555555555443 222210
Q ss_pred HHHHHHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHHHHhcCCCCc-------hhHHHHHHHHHhCCChHHHHHHHHH
Q 043955 381 TKEIHGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNVFESIESKDV-------VSWTSMISSYVHNGLANEALELFYL 452 (835)
Q Consensus 381 ~~~i~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~Al~lf~~ 452 (835)
... ...+..+.+.|-..|+++.|+.+|++...-+- ..|-.-...=.++.+++.|+++.++
T Consensus 383 ------------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 383 ------------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred ------------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 001 12566666666667777777777766554221 2233333333455566666666655
Q ss_pred HhhcCCc----------C-------ChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhh
Q 043955 453 MNEANVE----------S-------DSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDI 515 (835)
Q Consensus 453 m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 515 (835)
....--. | +...|+..++---..|-++..+.+++.++...+.....+-| ..-.+-...-+++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfee 529 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEE 529 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHH
Confidence 5431111 1 11223333444445567888888888888876653332222 2223345566788
Q ss_pred HHHHhhhCC----CCCh-hHHHHHHHHHHhc-C--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--cccCcHHHHHHH
Q 043955 516 ANKVFNCVQ----TKDL-ILWTSMINANGLH-G--RGKVAIDLFYKMEAESFAPDHITFLALLYAC--SHSGLINEGKKF 585 (835)
Q Consensus 516 A~~~f~~~~----~~~~-~~~~~li~~~~~~-g--~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~--~~~g~~~~a~~~ 585 (835)
|.+++++-. -|++ ..||..+.-+.+. | ..+.|..+|++.++ |.+|...-+..|+.|- -.-|+...|+.+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888754 2555 3788877766542 3 67899999999998 7888876655565543 234777777777
Q ss_pred HHHhhh--------------------cCCCCCChhHHHH----------------HHHHHhhcCCHHHHHHHHHhC--CC
Q 043955 586 LEIMRC--------------------DYQLDPWPEHYAC----------------LVDLLGRANHLEEAYQFVRSM--QI 627 (835)
Q Consensus 586 ~~~m~~--------------------~~~i~p~~~~y~~----------------lv~~l~r~g~~~eA~~~~~~m--~~ 627 (835)
++.... -||+.-+.+.|.- ..++=.+-|.++.|..++.-. -.
T Consensus 609 yerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 609 YERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 776542 2454444444432 234555678899998888655 12
Q ss_pred CC--CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 628 EP--TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 628 ~p--~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
.| +...|.+.=.--..|||-+--+.+.
T Consensus 689 dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 689 DPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred CCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34 5667888887788899955444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-07 Score=97.44 Aligned_cols=389 Identities=11% Similarity=0.071 Sum_probs=278.0
Q ss_pred ccCChhHHHHHHHhcCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHH
Q 043955 308 KCCCVNYMGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEI 384 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i 384 (835)
..+++..|+.+|++... +++..|---+..=.++.....|..++++....-...|..-| ..+..-..+|+...++++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 45677888888888764 46677877788888888888888888888765444444333 233334556888888888
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC--CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh
Q 043955 385 HGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE--SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS 462 (835)
Q Consensus 385 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~ 462 (835)
+..-..-.+ +...+++.|++-.+-..++.|+.++++.. .|++.+|--...-=.++|+..-|..+|...... -.|.
T Consensus 164 ferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 164 FERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 887776543 44578888888888888888888888754 588888877766667788888888888877652 2233
Q ss_pred hhhHhHHHHhhc----ccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhhHHHHh--------hhCCCC---
Q 043955 463 ITLVSALSAASS----LSILKKGKELNGFIIRKGFNLE-GSVASSLVDMYARCGALDIANKVF--------NCVQTK--- 526 (835)
Q Consensus 463 ~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f--------~~~~~~--- 526 (835)
..-..++.|++. ....+.++-|+.+.+..-.... ..++..+...=-+-|+...-..+. +.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 333344444443 4566777777777776532221 344555555444555543332222 222222
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHh---cccCcHHHHHHHHHHhhhcCCCC
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-------ITFLALLYAC---SHSGLINEGKKFLEIMRCDYQLD 596 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-------~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~i~ 596 (835)
|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=.|| ....+++.++++|+... .+-
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l---~lI 396 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL---DLI 396 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hhc
Confidence 6678888888888899999999999999975 67743 2233333344 46788999999999877 577
Q ss_pred CC-hhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 597 PW-PEHYACLVDLL----GRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 597 p~-~~~y~~lv~~l----~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
|. .-+++-+--+| .|+-++..|.+.+..+ +.-|-.-+....+..-...+++|.....+++.++-.|+|..++..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 74 45555444444 4889999999999877 888988899988888888999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHcCCCccCCceeE
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSW 704 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~ 704 (835)
.+.+=...|+|+.|..+....-+....-.|-.-|
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999998877665544454433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-07 Score=101.26 Aligned_cols=395 Identities=16% Similarity=0.089 Sum_probs=254.5
Q ss_pred hCCCccccccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 043955 290 QGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIG 366 (835)
Q Consensus 290 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 366 (835)
..+..|..+|..|.-....+|++..+.+.|++...- ....|+.+-..|...|....|+.+++.-......|+..+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345667888888999999999999999999987643 45679999999999999999999998876655446554444
Q ss_pred HHHH-Hh-ccccCchHHHHHHHHHHHhC--CC---chhHHHHHHHHHHhcCC-----------hhhHHHHHHhcCC----
Q 043955 367 SVLM-AC-SGLKCMSQTKEIHGYIIRKG--LS---DLVILNAIVDVYGKCGN-----------IDYSRNVFESIES---- 424 (835)
Q Consensus 367 ~ll~-a~-~~~~~~~~~~~i~~~~~~~~--~~---~~~~~~~li~~y~k~g~-----------~~~A~~~f~~~~~---- 424 (835)
.+.. .| .+.+..++|...-..++... .. ....+-.+.-+|...-. ..++.+.+++..+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333 34 34577777777777766622 21 22355555555543221 2344555555533
Q ss_pred -CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH-hCCCCchhHHHH
Q 043955 425 -KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR-KGFNLEGSVASS 502 (835)
Q Consensus 425 -~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~ 502 (835)
|+++-|- ---|+..++.+.|++..++....+-.-+...|.-+.-.++..+++..|..+.+.... .|.....-. .
T Consensus 477 dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~ 552 (799)
T KOG4162|consen 477 DPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--G 552 (799)
T ss_pred CchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--h
Confidence 3333332 234667778899999999888865566666666666666777888888888776654 222110000 0
Q ss_pred HHHHHHhcCChhhHHHH--------------------------hhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 503 LVDMYARCGALDIANKV--------------------------FNCVQ-----TKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~--------------------------f~~~~-----~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
-+..-.+-++.++|... +..+. ..|.++-..-+.+..+ -+.+.+..-.
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~ 631 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSEL 631 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhccccc
Confidence 01111112333333322 22111 0122222222222222 1111111000
Q ss_pred HHHHHCCCCCCH--------HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHH
Q 043955 552 YKMEAESFAPDH--------ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 552 ~~m~~~g~~Pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~ 622 (835)
. |...-+.|+. ..|......+...+..++|+..+.... ++.| ....|.-.++++...|+++||.+.+
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 2222233332 224455567888999999998877665 6677 4777888889999999999999988
Q ss_pred HhC-CCCCCHH-HHHHHHHHHhhcCchhHHHH--HHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 623 RSM-QIEPTAE-VWCALLGACRVHSNKELGEI--VAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 623 ~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
... -+.|+.+ +..+|.......|+-.+|+. +...+++++|.|+.+|..|+-++-+.|+.++|.+-....-+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 776 7888765 77788888888899888888 99999999999999999999999999999999988765543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-08 Score=101.67 Aligned_cols=496 Identities=12% Similarity=0.048 Sum_probs=275.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc-CCCCCeeeHHHHHHHHHhCC
Q 043955 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM-GEKEDVVLWNSIISAYSASG 139 (835)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m-~~~~~~~~~n~li~~~~~~g 139 (835)
+..+++-+....++..|.-+-+.+...+..|+..- -+..+|.-.|+.+.|..+...- -++.|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33444444455566667766676666665544433 3556666677777777776644 12267888888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHh
Q 043955 140 QCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLY 219 (835)
Q Consensus 140 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 219 (835)
++++|+.++..-. +.-+.+.|-..=. +..-+.+.+...+..-.+.++- -.--..|......++|+..|.
T Consensus 97 ~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essic------~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 97 EWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSIC------YLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccccccccchhcee------eeeeehhhhhccHHHHHHHHH
Confidence 8999888877321 1111111100000 0000111111111000111100 000123334455666666666
Q ss_pred cCCCCCcccHHHHHHHHHcCC-ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCC-Ccccc
Q 043955 220 QLENKDSVSWNSMLTGFVQND-LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGF-VSDLQ 297 (835)
Q Consensus 220 ~~~~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~ 297 (835)
+....|+..+.++..--...= -.++-+++|+.+. .. + ....+.+.-+.+++...-... .++..
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~---~a----~--------~~~ed~e~l~~lyel~~~k~~n~~~~~ 230 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLD---LA----M--------LTKEDVERLEILYELKLCKNRNEESLT 230 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhccc---HH----h--------hhhhHHHHHHHHHHhhhhhhccccccc
Confidence 655555554444332111110 1112222222110 00 0 000001111111111100000 00000
Q ss_pred ccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccC
Q 043955 298 IGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKC 377 (835)
Q Consensus 298 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 377 (835)
...- ...+. .+.++...-.-..-+...+++.+.++++....+. .++....+..-|..+...|+
T Consensus 231 r~~~-~sl~~---------------l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~ 293 (611)
T KOG1173|consen 231 RNED-ESLIG---------------LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGK 293 (611)
T ss_pred cCch-hhhhh---------------hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcc
Confidence 0000 00000 0123334444455566778888888888887764 23344444445556677777
Q ss_pred chHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHh
Q 043955 378 MSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKD---VVSWTSMISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 378 ~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~Al~lf~~m~ 454 (835)
...-..+--.+++.-|.....|-++.-.|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-
T Consensus 294 ~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa 373 (611)
T KOG1173|consen 294 SNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA 373 (611)
T ss_pred cchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence 7776666667777777777799999999999999999999998876533 4679999999999999999998887765
Q ss_pred hcCCcCC-hhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhH
Q 043955 455 EANVESD-SITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLIL 530 (835)
Q Consensus 455 ~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~ 530 (835)
+. -|. ...+.-+--- |.+.++++-|.+.|.... ..|+..
T Consensus 374 rl--~~G~hlP~LYlgme-----------------------------------y~~t~n~kLAe~Ff~~A~ai~P~Dplv 416 (611)
T KOG1173|consen 374 RL--MPGCHLPSLYLGME-----------------------------------YMRTNNLKLAEKFFKQALAIAPSDPLV 416 (611)
T ss_pred Hh--ccCCcchHHHHHHH-----------------------------------HHHhccHHHHHHHHHHHHhcCCCcchh
Confidence 42 111 0111111112 334455555555554433 234555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---C-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAE--SFA---P-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYA 603 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~--g~~---P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~ 603 (835)
.+-+....-..+.+.+|...|+..+.. .+- | -..|++.|..+|.+.+..++|+.+|+... .+.| +..+|+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL---~l~~k~~~~~a 493 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL---LLSPKDASTHA 493 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH---HcCCCchhHHH
Confidence 555555555556666666666665521 011 1 34568888899999999999999998766 5567 688999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 043955 604 CLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGAC 641 (835)
Q Consensus 604 ~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~ 641 (835)
.++-++.-.|.++.|.+.+.+. .++||..+-..+|+.+
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999887 8899888777887644
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.7e-09 Score=117.12 Aligned_cols=210 Identities=13% Similarity=0.028 Sum_probs=155.8
Q ss_pred CChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHh
Q 043955 441 GLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 441 g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
+++++|...+++..+ +.|+ +...+..+..++...|+.++|...|
T Consensus 318 ~~~~~A~~~~~~Al~--ldP~----------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~ 361 (553)
T PRK12370 318 NAMIKAKEHAIKATE--LDHN----------------------------------NPQALGLLGLINTIHSEYIVGSLLF 361 (553)
T ss_pred hHHHHHHHHHHHHHh--cCCC----------------------------------CHHHHHHHHHHHHHccCHHHHHHHH
Confidence 457888888888876 3454 2333455566677778888888888
Q ss_pred hhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC
Q 043955 521 NCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLD 596 (835)
Q Consensus 521 ~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 596 (835)
++..+ .+...|..+...|...|++++|+..|++..+ +.|+.. .+..++.++...|+.++|...++...... .
T Consensus 362 ~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~ 437 (553)
T PRK12370 362 KQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--L 437 (553)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--c
Confidence 77553 3456788888999999999999999999998 567653 23344445667899999999998876331 3
Q ss_pred C-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 597 P-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEV-WCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 597 p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
| ++..+..+..+|...|++++|.+.+++. +..|+... ++.|...+...| +.+....+++++..-..+.....+..
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~ 515 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL 515 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH
Confidence 5 4666788899999999999999999887 66776554 444444555555 57888888888776666666667999
Q ss_pred HHHhcCCchHHHHHHHHHHc
Q 043955 674 VFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 674 ~y~~~g~~~~a~~~~~~m~~ 693 (835)
+|+-.|+-+.+..++ .+++
T Consensus 516 ~~~~~g~~~~~~~~~-~~~~ 534 (553)
T PRK12370 516 VLVAHGEAIAEKMWN-KFKN 534 (553)
T ss_pred HHHHHhhhHHHHHHH-Hhhc
Confidence 999999999998884 4544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-06 Score=92.12 Aligned_cols=546 Identities=13% Similarity=0.114 Sum_probs=308.3
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCChhhHHHH
Q 043955 88 GYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRV-GLVTNAYTFVAA 166 (835)
Q Consensus 88 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~l 166 (835)
+..|....|-.+-+. ++.+...+.+||. .|-..+.....+|+.......|++.+.. .+.--...+...
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmpR-----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~ly 144 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMPR-----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLY 144 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCCH-----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHH
Confidence 445666666655443 4556666777766 7888888888899988888888876543 333344566667
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCc----------ccHHHHHHHH
Q 043955 167 LQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDS----------VSWNSMLTGF 236 (835)
Q Consensus 167 l~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~----------~~~~~li~~~ 236 (835)
++.....+-++.+..++.+.++..+. .-+--|..+++.+++++|.+.+..+...|. ..|+-+-.-.
T Consensus 145 l~Fv~~~~lPets~rvyrRYLk~~P~----~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli 220 (835)
T KOG2047|consen 145 LKFVESHGLPETSIRVYRRYLKVAPE----AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI 220 (835)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCHH----HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH
Confidence 77777777777777777777664332 245666677777777777777776654332 2233222222
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCC--cc--ccccchhhhhhhccCCh
Q 043955 237 VQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFV--SD--LQIGNTLMDMYAKCCCV 312 (835)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~--~~~~~~Li~~y~~~g~~ 312 (835)
+++-+.-..+. ... +++.|+. +| ...|++|.+-|.+.|.+
T Consensus 221 s~~p~~~~sln--------------------------------vda----iiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 221 SQNPDKVQSLN--------------------------------VDA----IIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HhCcchhcccC--------------------------------HHH----HHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 22211111111 111 1222221 11 34677788888888888
Q ss_pred hHHHHHHHhcCCC--CcccHHHHHHHHHhcCChHHHHHHHHHHH--HcCCCCChhHHHHHHHHhccccCchHHHHHHHHH
Q 043955 313 NYMGRVFYQMTAQ--DFISWTTIIAGYAQNNCHLKALELFRTVQ--LEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYI 388 (835)
Q Consensus 313 ~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~ 388 (835)
+.|+.+|++..+. .+.-++.+.++|++-....-+..+= +. +.|-.-+...+...+..+..+-+.. -.-+-+-+
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl~~~~a~~e~lm~rr-~~~lNsVl 341 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDLELHMARFESLMNRR-PLLLNSVL 341 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhHHHHHHHHHHHHhcc-chHHHHHH
Confidence 8888888775443 4444555666665432211111111 10 1111112222211111111100000 00011122
Q ss_pred HHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC-------CC--CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc
Q 043955 389 IRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE-------SK--DVVSWTSMISSYVHNGLANEALELFYLMNEANVE 459 (835)
Q Consensus 389 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~--~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~ 459 (835)
++.++.+...|..-+..| .|+..+-...|.+.. .+ --..|..+..-|-.+|+.+.|..+|.+..+...+
T Consensus 342 LRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 233333333343333333 233444444444332 11 2346888999999999999999999998764322
Q ss_pred CChhhhHhHHHHhh----cccchhhHHHHHHHHHHh-----------CCC------CchhHHHHHHHHHHhcCChhhHHH
Q 043955 460 SDSITLVSALSAAS----SLSILKKGKELNGFIIRK-----------GFN------LEGSVASSLVDMYARCGALDIANK 518 (835)
Q Consensus 460 p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~-----------g~~------~~~~~~~~li~~y~k~g~~~~A~~ 518 (835)
...-+..+=-+|+ +..+.+.|..+.+.+... +.+ .+..+|+-++|.--.+|-++.-..
T Consensus 420 -~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 420 -TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred -chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 1111222333333 334566666665544321 111 123456666777778899999999
Q ss_pred HhhhCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHhcccCcHHHHHHHHHHhhh
Q 043955 519 VFNCVQTKDLILWTSM---INANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALL---YACSHSGLINEGKKFLEIMRC 591 (835)
Q Consensus 519 ~f~~~~~~~~~~~~~l---i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll---~a~~~~g~~~~a~~~~~~m~~ 591 (835)
+++++.+--+.|=... ...+-.|..++++.+.|++-+..---|+.. .|+..| ..=...-.++.|+.+|+...+
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9998875433332222 223446778999999999877653345542 344444 332334468999999998874
Q ss_pred cCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCH--HHHHHHHHH-HhhcCchhHHHHHHHHHHhcCCCC
Q 043955 592 DYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTA--EVWCALLGA-CRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 592 ~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~--~~~~~ll~a-~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
+..|. -..|-....+=.+-|....|+++++++ .++|.. ..|+.++.- --+.| +..-+.+++++++.=|++
T Consensus 579 --~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~ 655 (835)
T KOG2047|consen 579 --GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDS 655 (835)
T ss_pred --cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChH
Confidence 55553 233444445555679999999999998 455533 378887743 33444 445678899999998875
Q ss_pred CCc--hHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 665 PGN--YVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 665 ~~~--~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
-.- -.-.+.+=.+.|..+.|+.+..--.+
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 433 34567888889999999888864443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-07 Score=92.89 Aligned_cols=311 Identities=14% Similarity=0.154 Sum_probs=204.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhccccCchHHHHHHHHHHHhCC-Cc---hhHHHHHHHHHHhcCChh
Q 043955 339 QNNCHLKALELFRTVQLEGLDADV-MIIGSVLMACSGLKCMSQTKEIHGYIIRKGL-SD---LVILNAIVDVYGKCGNID 413 (835)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~-~~---~~~~~~li~~y~k~g~~~ 413 (835)
-++++++|.++|-+|.+. .|.. .+-.++-+.+-+.|..+.|..+|..+.++.- +. ..+...|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 346788888888888763 2222 2334455567778888888888888877643 22 226777889999999999
Q ss_pred hHHHHHHhcCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH
Q 043955 414 YSRNVFESIESKDV---VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR 490 (835)
Q Consensus 414 ~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 490 (835)
.|+.+|..+.+.+. ....-|+..|-+..+|++|++.-+++.+.|-++..+-..
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------ 180 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------ 180 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH------------------------
Confidence 99999999877433 445567889999999999999999988766554433221
Q ss_pred hCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HH
Q 043955 491 KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH--IT 565 (835)
Q Consensus 491 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t 565 (835)
..|.-|...+.-..+++.|...+.+..+- .+..=-.+...+...|+++.|++.++...+. .|+. .+
T Consensus 181 -------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~ev 251 (389)
T COG2956 181 -------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHH
Confidence 11233444455556777777777766543 3333344566778889999999999999884 5655 35
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHhhc
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFV-RSMQIEPTAEVWCALLGACRVH 644 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~ll~a~~~~ 644 (835)
...|..+|.+.|+.+++..++.++.+. .|.++.-..|.++.....-.++|...+ +...-+|+......|+..-..
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~- 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA- 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc-
Confidence 667788889999999999998877743 344444455555555444455555544 334556766555454443110
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCC
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARD 718 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d 718 (835)
+ ++-|+|.+..-+.+.|-...++..|.+.--.-+-+.|.|.-..
T Consensus 328 --------------d----------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~C 371 (389)
T COG2956 328 --------------D----------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHC 371 (389)
T ss_pred --------------c----------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeC
Confidence 0 1234566666666667666677777666555555666665433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-07 Score=93.69 Aligned_cols=291 Identities=12% Similarity=0.038 Sum_probs=215.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 043955 138 SGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGV 217 (835)
Q Consensus 138 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 217 (835)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+...+.++.+.-.+++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766655444 3345555666777888888888888888776677777777788888888888888877
Q ss_pred HhcCC---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCc
Q 043955 218 LYQLE---NKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVS 294 (835)
Q Consensus 218 f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 294 (835)
.++.. .++..........|.+.|++.+...++..|.+.|+--|... .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 66554 45777888889999999999999999999998886554320 000
Q ss_pred cccccchhhhhhhccCChhHHHHHHHhcCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043955 295 DLQIGNTLMDMYAKCCCVNYMGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA 371 (835)
Q Consensus 295 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 371 (835)
...+++.+++-....+..+.-...++..+. .++..--+++.-+.+.|+.++|.++..+-.+.+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 011222233333333333333445555543 2555666778888899999999999999988887777 333345
Q ss_pred hccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC--CCCchhHHHHHHHHHhCCChHHHHHH
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE--SKDVVSWTSMISSYVHNGLANEALEL 449 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~l 449 (835)
+.+.++.+.-.+..+...+..+.+...+.+|...|.|.+.+.+|...|+... .++..+|+-+..+|.+.|++++|-+.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 6777888888888888888888877899999999999999999999999765 47889999999999999999999999
Q ss_pred HHHHhhcCCcCC
Q 043955 450 FYLMNEANVESD 461 (835)
Q Consensus 450 f~~m~~~g~~p~ 461 (835)
+++-+..-..|+
T Consensus 384 r~e~L~~~~~~~ 395 (400)
T COG3071 384 RREALLLTRQPN 395 (400)
T ss_pred HHHHHHHhcCCC
Confidence 998775444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-06 Score=87.56 Aligned_cols=529 Identities=16% Similarity=0.175 Sum_probs=286.5
Q ss_pred CCChHhHHHHHHhcCC-CCc-chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHH
Q 043955 5 CGSVLDAEQLFDKVSQ-RTV-FTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHG 82 (835)
Q Consensus 5 ~g~~~~A~~~f~~~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~ 82 (835)
.|+++.|..+++.... |+. ..|-.+...-...|+..-|.+.| +..|++..++.+|+
T Consensus 457 ~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lhd 514 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLHD 514 (1636)
T ss_pred cCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 4666666666665442 332 24555555555555554444444 33455666666665
Q ss_pred HHH-------HhCCC-CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 043955 83 LVL-------KCGYD-STDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRV 154 (835)
Q Consensus 83 ~~~-------~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 154 (835)
.+. +.|-. .+-+-..+++.+.. .++.+|..+|-+-. .-..-|..|.....|++|+.+-+..
T Consensus 515 ~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn------~te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 515 ILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN------ATEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc------cHHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 432 11211 11122233333333 36777777775421 1233455566666677776654332
Q ss_pred CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhc--CCCCCcccHHHH
Q 043955 155 GLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQ--LENKDSVSWNSM 232 (835)
Q Consensus 155 g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~--~~~~d~~~~~~l 232 (835)
|.+.-...-.+-++++...|.-+.|-++-. ++. -.-+-|..|.+.|.+..|.+.-.. ....|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk~--------sdg-d~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELKE--------SDG-DGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhcc--------ccC-ccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 222111122333455555554444433211 111 124567888888888777665432 122355555566
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCCh
Q 043955 233 LTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCV 312 (835)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 312 (835)
..++.+...+++|=++|+++.. +...+..+.+-..+..|.++-+.
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarf-------------------------- 699 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARF-------------------------- 699 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHh--------------------------
Confidence 6677777777777777777642 11122222222222222222111
Q ss_pred hHHHHHHHhcCCCCccc-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHh
Q 043955 313 NYMGRVFYQMTAQDFIS-WTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRK 391 (835)
Q Consensus 313 ~~A~~~f~~m~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 391 (835)
.-...++. -...-..+.+.|+++.|+..|-+... ....+.+......+..+..+.+.+...
T Consensus 700 ---------afp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 700 ---------AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred ---------hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 10001111 11122334455666666665544321 122233444555666666666555443
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHH
Q 043955 392 GLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSA 471 (835)
Q Consensus 392 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a 471 (835)
... ...|.-+.+-|+..|+++.|.++|-+. ..++--|..|.++|++++|.++-.+.. .|....
T Consensus 762 k~~-s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~----~~e~t~------- 824 (1636)
T KOG3616|consen 762 KTA-SGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECH----GPEATI------- 824 (1636)
T ss_pred ccc-cccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhc----CchhHH-------
Confidence 321 125566777788888888888888654 235566778888888888888765543 222211
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 472 ASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
..|-+-..-.-+.|++.+|.++|-.+..|+.. |..|-+||..++.+++.
T Consensus 825 --------------------------~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 825 --------------------------SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred --------------------------HHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHH
Confidence 12222223344678888888888888877753 67788888888888887
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---
Q 043955 552 YKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQ--- 626 (835)
Q Consensus 552 ~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--- 626 (835)
++ ..||. -|-..+..-+...|++.+|...|-... -+..-|++|-.+|.+++|+.+-+.-+
T Consensus 874 ~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n 938 (1636)
T KOG3616|consen 874 EK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGAN 938 (1636)
T ss_pred HH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccccc
Confidence 66 34554 355666667777888888887775432 35567888888888888888876642
Q ss_pred CCCC-HHHHHHHH------HHHhhcCchhHHHHHH------HHHHh-----cCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 627 IEPT-AEVWCALL------GACRVHSNKELGEIVA------KKLLE-----LDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 627 ~~p~-~~~~~~ll------~a~~~~~~~~~a~~~~------~~~~~-----l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
.+.. ...|.--+ ....+||-++.|...+ +-+++ ....-+..++.|+..+...|++++|.+-.
T Consensus 939 ~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 939 AEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhh
Confidence 1111 22343222 1233455554443321 11222 22345667888999999999999997765
Q ss_pred HHH
Q 043955 689 MRM 691 (835)
Q Consensus 689 ~~m 691 (835)
-..
T Consensus 1019 vea 1021 (1636)
T KOG3616|consen 1019 VEA 1021 (1636)
T ss_pred HHH
Confidence 443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=109.16 Aligned_cols=237 Identities=16% Similarity=0.203 Sum_probs=165.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCC----------Cch-hHHHHHHHHHhCCChHHHHHHHHHHhhc---CCcCChh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESK----------DVV-SWTSMISSYVHNGLANEALELFYLMNEA---NVESDSI 463 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~Al~lf~~m~~~---g~~p~~~ 463 (835)
+...|..+|...|+++.|..+|....+. .+. .-+.+...|...+++.+|..+|+++..- ..-++..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5566888888888888888888755431 111 1233555677888888888888888651 1111211
Q ss_pred hhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCC
Q 043955 464 TLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGR 543 (835)
Q Consensus 464 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 543 (835)
.+ ..+++.|...|.+.|++++|...+
T Consensus 281 ~v-------------------------------a~~l~nLa~ly~~~GKf~EA~~~~----------------------- 306 (508)
T KOG1840|consen 281 AV-------------------------------AATLNNLAVLYYKQGKFAEAEEYC----------------------- 306 (508)
T ss_pred HH-------------------------------HHHHHHHHHHHhccCChHHHHHHH-----------------------
Confidence 11 234456667788889998888875
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhhhcCC--CCC---C-hhHHHHHHHHHhhcCCH
Q 043955 544 GKVAIDLFYKMEAESFAPDHI--TFLALLYACSHSGLINEGKKFLEIMRCDYQ--LDP---W-PEHYACLVDLLGRANHL 615 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--i~p---~-~~~y~~lv~~l~r~g~~ 615 (835)
++|++++++ ..|..+..+ -+..+...|.+.+.+++|..++....+-+. ..+ . ..+|+.|..+|-..|++
T Consensus 307 -e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 307 -ERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred -HHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 446777777 233444333 356666778999999999998886655443 222 1 57899999999999999
Q ss_pred HHHHHHHHhC---------CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhc----CCCCC---CchHHHHHHHHhc
Q 043955 616 EEAYQFVRSM---------QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLEL----DPGNP---GNYVLISNVFAAS 678 (835)
Q Consensus 616 ~eA~~~~~~m---------~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~p~~~---~~~~~l~~~y~~~ 678 (835)
+||+++++++ ...+. ....+.|..+|...++.+.|...+++.+.+ .|+++ ..|..|+-+|.+.
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 9999999886 11232 336778888998888988888888876643 45554 4577788899999
Q ss_pred CCchHHHHHHHHH
Q 043955 679 RKWKDVEQVRMRM 691 (835)
Q Consensus 679 g~~~~a~~~~~~m 691 (835)
|++++|.++-...
T Consensus 464 g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 464 GNYEAAEELEEKV 476 (508)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999986654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-07 Score=93.26 Aligned_cols=280 Identities=14% Similarity=0.024 Sum_probs=156.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCch-hHHHHHHHHHHhcCChhhHHHH
Q 043955 340 NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDL-VILNAIVDVYGKCGNIDYSRNV 418 (835)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~li~~y~k~g~~~~A~~~ 418 (835)
.|++..|.++..+-.+.+-.|- ..|.....+....|+.+.+-.....+.+...++. .+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5778888888777666654442 2344455566777888888888888777744443 4888888888888998888877
Q ss_pred HHhcC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh-------hhhHhHHHHhhcccchhhHHHHHHHH
Q 043955 419 FESIE---SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS-------ITLVSALSAASSLSILKKGKELNGFI 488 (835)
Q Consensus 419 f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~i~~~~ 488 (835)
.++.. .+++........+|.+.|++.+.+.+..+|.+.|+--|+ .++..+|.-+...+..+.-++.+...
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 76554 467778888899999999999999999999998865554 34444444444433333322222222
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043955 489 IRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLA 568 (835)
Q Consensus 489 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ 568 (835)
-+ .... ++..-.+++.-+.+.|+.++|.++.++..+.+..|.-.
T Consensus 256 pr-~lr~-------------------------------~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---- 299 (400)
T COG3071 256 PR-KLRN-------------------------------DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---- 299 (400)
T ss_pred cH-Hhhc-------------------------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----
Confidence 11 1222 33344444444555555555555555555544444421
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCch
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNK 647 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~ 647 (835)
.+-.|..-++.+.=.+..+.-.+.++-+| ..+..++.++.+.+.+.+|.++++.. +..|+...|.-|..++-..|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 22223344443333333333333333333 33344444444444444444444433 4444444444444444444444
Q ss_pred hHHHHHHHHHH
Q 043955 648 ELGEIVAKKLL 658 (835)
Q Consensus 648 ~~a~~~~~~~~ 658 (835)
+.|..+.+..+
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-06 Score=87.47 Aligned_cols=263 Identities=12% Similarity=0.045 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHH---HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh-
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSM---ISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA- 472 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~- 472 (835)
....++.+.|...|+.++|...|++...-|+.+..+| .-.+.+.|++++--.+-..+.... +-....| ++.+|
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w--fV~~~~ 309 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW--FVHAQL 309 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh--hhhhhh
Confidence 3777888888888888888888888776665555544 223456788887777776665421 1111111 22222
Q ss_pred -hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC--C-CChhHHHHHHHHHHhcCChHHHH
Q 043955 473 -SSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ--T-KDLILWTSMINANGLHGRGKVAI 548 (835)
Q Consensus 473 -~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~Al 548 (835)
-...+.+.|..+-+..++..-. +...+-.-...+...|+.++|.-.|+... . -+..+|..++..|...|+..||+
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 2234555555555555443211 12222222345567899999999998755 3 48899999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHhc-ccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 549 DLFYKMEAESFAPDHITFLALL-YACS-HSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 549 ~l~~~m~~~g~~Pd~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.+-+..... +.-+..+...+. ..|. ....-+.|.+++++-. .++|+ ......+..++.+.|+.+++..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 988877663 233334444332 2332 3344678999988655 78886 677788899999999999999999987
Q ss_pred -CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 626 -QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 626 -~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
...||....+.|....+..+....|..-+..++.++|+|-.+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 678999999999999999999999999999999999987433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-08 Score=103.18 Aligned_cols=207 Identities=12% Similarity=0.033 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHHHh-CCCCc--hhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 478 LKKGKELNGFIIRK-GFNLE--GSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 478 ~~~a~~i~~~~~~~-g~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.+.+..-+..++.. ...++ ...+..+...|.+.|+.++|...|+...+ .+...|+.+...|...|++++|++.|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444445432 22222 45677888889999999999999987653 46789999999999999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 043955 552 YKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QIE 628 (835)
Q Consensus 552 ~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~ 628 (835)
++.++ +.|+. .++..+..++...|++++|.+.|+... .+.|+.........++.+.++.++|.+.+++. ...
T Consensus 122 ~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al---~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 122 DSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY---QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99998 67875 567888888899999999999999877 45664322222233455678999999999664 333
Q ss_pred CCHHHHHHHHHHHhhcCchhHHHHHHHHH-------HhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 629 PTAEVWCALLGACRVHSNKELGEIVAKKL-------LELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 629 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~-------~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+...|. +. ....|+.+.+. +.+.+ .++.|+.+.+|..|+.+|...|++++|....++.-+
T Consensus 197 ~~~~~~~-~~--~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KEQWGWN-IV--EFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred ccccHHH-HH--HHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4433332 21 12245554432 33333 366777788999999999999999999999876665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-08 Score=96.71 Aligned_cols=196 Identities=17% Similarity=0.159 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..+..+...|...|++++|.+.|++.... .|+. ...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~----------------------------------~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDD----------------------------------YLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc----------------------------------HHHHHHHHHHH
Confidence 44555666777777777777777776542 2321 12334455556
Q ss_pred HhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHH
Q 043955 508 ARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 583 (835)
...|++++|.+.|++.. ..+...|..+...|...|++++|++.|++.......|. ...+..+..++...|+.++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666665543 23445667777777777888888888887776432232 234555666677788888888
Q ss_pred HHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhc
Q 043955 584 KFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 584 ~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 660 (835)
.+|+.... ..| +...+..++.++...|++++|.+.+++. ...| ++..|..+.......|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88877663 345 3566777888888888888888887776 3333 4455556666677778888888877776665
Q ss_pred CC
Q 043955 661 DP 662 (835)
Q Consensus 661 ~p 662 (835)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 44
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-05 Score=88.17 Aligned_cols=440 Identities=15% Similarity=0.121 Sum_probs=267.4
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch-HH
Q 043955 190 GQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVC-TV 265 (835)
Q Consensus 190 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 265 (835)
.+.-|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++-....-.|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4556888999999999999999999999998654 3456799999999999999999999988765443354443 33
Q ss_pred HHHHHHh-ccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcC----CCCcccHHHHHHHHHhc
Q 043955 266 NAVSASG-RLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMT----AQDFISWTTIIAGYAQN 340 (835)
Q Consensus 266 ~ll~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~ 340 (835)
..-..|. +.+..+++...-..++...- .+++.+......|..+. .....+|. -+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~--------------~~~~~l~~~~~l~lGi~y~~~A~~a~~~s------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLG--------------GQRSHLKPRGYLFLGIAYGFQARQANLKS------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhh--------------hhhhhhhhhHHHHHHHHHHhHhhcCCChH------HHH
Confidence 3334443 45566666655555554210 01111111111111110 00111111 011
Q ss_pred CChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC-chhHHHHHHHHHHhcCChhhHHHH
Q 043955 341 NCHLKALELFRTVQLEG-LDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNV 418 (835)
Q Consensus 341 g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~ 418 (835)
-...++++.+++..+.+ -.|+...|.++- ++-.++++.|.+.....++.+.. +...+.-|.-.+...+++.+|..+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 22456777777776543 456555555554 44567888888888888888554 455888888888888999999888
Q ss_pred HHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhc--CCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCC
Q 043955 419 FESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEA--NVESDSITLVSALSAASSLSILKKGKELNGFIIRKGF 493 (835)
Q Consensus 419 f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 493 (835)
.+...+. |-+.-..-|..-..-++.++|+.....|..- ...|-..|. . .|....-+.-...... ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~----~----~g~~~~lk~~l~la~~-q~ 606 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL----D----EGKLLRLKAGLHLALS-QP 606 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh----h----hhhhhhhhcccccCcc-cc
Confidence 7765431 2111111122223367778887777766541 111111111 0 0000000000000000 00
Q ss_pred CCchhHH---HHHHHHHHhcCChhhHHHHhhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-
Q 043955 494 NLEGSVA---SSLVDMYARCGALDIANKVFNCVQTKD------LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH- 563 (835)
Q Consensus 494 ~~~~~~~---~~li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~- 563 (835)
.-.+.++ .+++..-.+.-..+.....|...+.|+ ...|......+...++.++|...+.+... +.|-.
T Consensus 607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~ 684 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSA 684 (799)
T ss_pred cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhH
Confidence 0011111 222221122222222233333333343 23577778888889999999888777765 44543
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHH
Q 043955 564 ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQ--FVRSM-QIEP-TAEVWCALL 638 (835)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~--~~~~m-~~~p-~~~~~~~ll 638 (835)
..|.-........|..+||.+.|.... -++|+ +.....+..+|.+.|+-.-|.. ++..+ .+.| +...|-.|.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 334444455677899999999998665 78895 8888999999999997666666 88777 7788 466999999
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
-..++.|+.+.|-..+.-+++|++.+|
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-07 Score=89.59 Aligned_cols=282 Identities=13% Similarity=0.128 Sum_probs=177.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHhHHHHHHHHHHhCCCcc---ccccchhhhhhhccCChhH
Q 043955 239 NDLYCKAMQFFRELQGAGQKPDQV-CTVNAVSASGRLGNLLNGKELHAYAIKQGFVSD---LQIGNTLMDMYAKCCCVNY 314 (835)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~ 314 (835)
++++++|.++|-+|.+. .|..+ +-.++-+.+.+.|..+.|..+|..++++.--+. ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46778888888888763 23222 344556667778888888888888776521111 1233345667888899999
Q ss_pred HHHHHHhcCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHhccccCchHHHHHHHH
Q 043955 315 MGRVFYQMTAQDF---ISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMI----IGSVLMACSGLKCMSQTKEIHGY 387 (835)
Q Consensus 315 A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~~~~i~~~ 387 (835)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++.+.+-++..+- |.-+........+.+.++..+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998877443 3456678889999999999999999888776665543 22333344445666777777777
Q ss_pred HHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCch----hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChh
Q 043955 388 IIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVV----SWTSMISSYVHNGLANEALELFYLMNEANVESDSI 463 (835)
Q Consensus 388 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~ 463 (835)
..+..+....+.-.+.+.+...|+++.|.+.++.+.+.|+. .-..|..+|.+.|+.++.+..+.++.+....++..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 77766666666666677777777777777777766654432 33455566777777777777666666533222221
Q ss_pred hhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhh-CC-CCChhHHHHHHHHHH--
Q 043955 464 TLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNC-VQ-TKDLILWTSMINANG-- 539 (835)
Q Consensus 464 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~-~~-~~~~~~~~~li~~~~-- 539 (835)
..+-+.-....-.+.|.....+ +. +|+...+..+|..-.
T Consensus 286 -------------------------------------l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 286 -------------------------------------LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred -------------------------------------HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 1111222222333444443332 22 466667777776543
Q ss_pred -hcCChHHHHHHHHHHHHCCC
Q 043955 540 -LHGRGKVAIDLFYKMEAESF 559 (835)
Q Consensus 540 -~~g~~~~Al~l~~~m~~~g~ 559 (835)
.-|.+.+.+.+++.|..+.+
T Consensus 329 aeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 329 AEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred ccccchhhhHHHHHHHHHHHH
Confidence 34567888888888876543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.1e-07 Score=87.99 Aligned_cols=444 Identities=14% Similarity=0.082 Sum_probs=225.3
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 043955 70 MLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQCLEALGL 147 (835)
Q Consensus 70 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~~~~A~~l 147 (835)
..+++..|..+++.-...+-+....+--=+...|.+.|++++|..++..+ ...++...|-.|...+.-.|.+.+|..+
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 34455555555544433222211111112233455667777777777655 2225555666666666666666666665
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC--CC
Q 043955 148 FREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN--KD 225 (835)
Q Consensus 148 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d 225 (835)
-.+..+ ++..-..++...-+.++-+.-..+|+.+...- .-.-+|..+.--.-.+.+|.+++.++.. |+
T Consensus 114 ~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 114 AEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 444321 22333334444455666666666666554321 1112333333333457888888888765 44
Q ss_pred cccHHHHH-HHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc--cCChHhHHHHHHHHHHhCCCccccccchh
Q 043955 226 SVSWNSML-TGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGR--LGNLLNGKELHAYAIKQGFVSDLQIGNTL 302 (835)
Q Consensus 226 ~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 302 (835)
-...|.-+ -+|.+..-++-+.+++.--.+. -||. |+..=+.+|.. .=+-..+.+-...+.+.+-..-++.--.+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 44555443 4567777777777777766653 4443 44444455533 22222333333333333211111100000
Q ss_pred hhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-----hccccC
Q 043955 303 MDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA-----CSGLKC 377 (835)
Q Consensus 303 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-----~~~~~~ 377 (835)
-.-+.-...-+.|.+++-.+...-+..--.++--|.+.++.++|..+.+++.- ..|-.+....+..+ ......
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 00111112334555555443332222333445557888999999988877642 33444444333332 223334
Q ss_pred chHHHHHHHHHHHhCCC-chh-HHHHHHHHHHhcCChhhHHHHHHhcCC----CCchhHHHHHHHHHhCCChHHHHHHHH
Q 043955 378 MSQTKEIHGYIIRKGLS-DLV-ILNAIVDVYGKCGNIDYSRNVFESIES----KDVVSWTSMISSYVHNGLANEALELFY 451 (835)
Q Consensus 378 ~~~~~~i~~~~~~~~~~-~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~Al~lf~ 451 (835)
+..|.+.+..+-.++.. |+. -..++...+.-..++|+....+..+.. .|...+| +..+++..|++.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHh
Confidence 55666777666666654 322 556666666666667776666665543 3444443 5667777777777777776
Q ss_pred HHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC-ChhH
Q 043955 452 LMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK-DLIL 530 (835)
Q Consensus 452 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~ 530 (835)
+.....+ -|..+|.++|. ..|.++|.++.|+.+|-++..+ +..+
T Consensus 418 ~is~~~i-kn~~~Y~s~LA----------------------------------rCyi~nkkP~lAW~~~lk~~t~~e~fs 462 (557)
T KOG3785|consen 418 RISGPEI-KNKILYKSMLA----------------------------------RCYIRNKKPQLAWDMMLKTNTPSERFS 462 (557)
T ss_pred hhcChhh-hhhHHHHHHHH----------------------------------HHHHhcCCchHHHHHHHhcCCchhHHH
Confidence 6543222 34455544443 3366677777777766665544 2223
Q ss_pred HHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043955 531 WTS-MINANGLHGRGKVAIDLFYKMEAESFAPDHITF 566 (835)
Q Consensus 531 ~~~-li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~ 566 (835)
.-. +..-|-+.+.+--|-+.|+.+.. ..|+...|
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 222 22334455555555555555554 34444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-05 Score=84.03 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC-CCCeeeHHHH-----HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 043955 96 VNSLVAMYAKCYDFRKARQLFDRMGE-KEDVVLWNSI-----ISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQA 169 (835)
Q Consensus 96 ~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~n~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 169 (835)
+..+.+.+.+.|-...|++.+.++.. ++.+ ..+.+ +..|.-.-.++++++.++.|...+++.|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~v-Vhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVV-VHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHH-HHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56677888899999999998887732 1222 22222 23455556788999999999999988887776666555
Q ss_pred hhcCCChhHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHhCCChhHHHHHHhcC
Q 043955 170 CEDSSFETLGMEIHAATVKS-----------GQNLQVYVANALIAMYARCGKMTEAAGVLYQL 221 (835)
Q Consensus 170 ~~~~~~~~~a~~l~~~~~~~-----------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 221 (835)
+...-..+...++|+..... .+..|+.+.-.-|.+-++.|++.+.+++.++-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 54443333344444433221 24556667778899999999999988887653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-08 Score=111.15 Aligned_cols=177 Identities=11% Similarity=-0.000 Sum_probs=139.8
Q ss_pred cCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHH
Q 043955 510 CGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKF 585 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~ 585 (835)
.|++++|...+++..+ .+...|..+...+...|++++|+..|++.++ ..|+. ..+..+..++...|+.++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567889999987664 4677899999999999999999999999998 57875 4577778889999999999999
Q ss_pred HHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcC
Q 043955 586 LEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELD 661 (835)
Q Consensus 586 ~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 661 (835)
++... .+.|+ ...+..+..++...|++++|++.+++. ...|+ +..+..+..++...|+.+.|+..++++....
T Consensus 395 ~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 99887 56775 333344555677789999999999876 22354 4456666666778899999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 662 PGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 662 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|++......|+..|...| ++|....+.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 988888888888888888 477665444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-08 Score=90.95 Aligned_cols=162 Identities=15% Similarity=0.039 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVD 607 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~ 607 (835)
+...+.-+|.+.|+...|.+-+++.++ ..|+. -++..+...|...|..+.|.+.|+... .+.| +.+..+..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 455677889999999999999999998 57776 578888888999999999999999776 7788 5788899999
Q ss_pred HHhhcCCHHHHHHHHHhC---CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 608 LLGRANHLEEAYQFVRSM---QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m---~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
.|+..|++++|...|++. |.-|. +.+|..+.....+.|+.+.|+..+++.++++|+++.....+++.....|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999887 54443 34788887777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 043955 684 VEQVRMRMRGSGL 696 (835)
Q Consensus 684 a~~~~~~m~~~~~ 696 (835)
|.-..+....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9998887776653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-06 Score=88.49 Aligned_cols=460 Identities=15% Similarity=0.137 Sum_probs=226.7
Q ss_pred hcCChHHHHHHHhhcCCCCCee-eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHH
Q 043955 105 KCYDFRKARQLFDRMGEKEDVV-LWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIH 183 (835)
Q Consensus 105 ~~g~~~~A~~~f~~m~~~~~~~-~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~ 183 (835)
..|+++.|..+++.....|+.. .|-.+.......|+.--|.+.|..+ |+...++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai----------------------~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI----------------------GDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH----------------------HHHHHHHHHH
Confidence 4577788887777664434443 4666666666666665555554433 3344444444
Q ss_pred HHHH-------HhCCC-CchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 043955 184 AATV-------KSGQN-LQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGA 255 (835)
Q Consensus 184 ~~~~-------~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (835)
+... ..|-+ .+-+-..+++.+.. ..+.+|+.+|-+-. + -..-|..|....+|++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 4332 12222 22222333443332 34667777764311 1 123344555556677776664322
Q ss_pred CCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhc--CCCCcccHHHH
Q 043955 256 GQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQM--TAQDFISWTTI 333 (835)
Q Consensus 256 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~l 333 (835)
|.+.-...-.+-+.++...|+-+.|-++ ..+..-.-+-|..|.|.|.+..|.+.-..- ...|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 1111111222334444444544443322 112222335577888888887776654221 11243344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchh--HHHHHHHHHHhcCC
Q 043955 334 IAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLV--ILNAIVDVYGKCGN 411 (835)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~li~~y~k~g~ 411 (835)
..++.+...+++|-.+|+++.. || ..+..+-+-..+..+.++- +..+|..+ .-.+..+-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~kaiela----rfafp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFGKAIELA----RFAFPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHHHHHHHH----HhhCcHHHhhHHHHHhHHHHHHHh
Confidence 5555555556666666655532 11 1111111111222222221 12233221 33344444556667
Q ss_pred hhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHh
Q 043955 412 IDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRK 491 (835)
Q Consensus 412 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 491 (835)
++.|..-|-+.. ..-.-|.+-.....+.+|+.+++.++.... -.--|.-+..-+++.|+++.|.+++...
T Consensus 722 ~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 777766664331 111223445566777777777777766432 2233555666677777777777666432
Q ss_pred CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043955 492 GFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK--DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLAL 569 (835)
Q Consensus 492 g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~l 569 (835)
..++--|+||.+.|++++|.++-.+...| ..++|-+-..-+-.||++.+|.++|-... .||. .
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----a 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----A 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----H
Confidence 22345567777777777777766665544 33455555555666777777766664432 3443 2
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhH
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~ 649 (835)
+..|-+.|+.++-+++.+.-- | +--.++.-.+..-|...|++.+|++-+-+.+ -|.+-.+.++..+-.+.
T Consensus 857 iqmydk~~~~ddmirlv~k~h---~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHH---G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhC---h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHH
Confidence 334556666666665554221 1 0012333344555666666666666554432 24444444444444444
Q ss_pred HHHH
Q 043955 650 GEIV 653 (835)
Q Consensus 650 a~~~ 653 (835)
|.++
T Consensus 927 ayri 930 (1636)
T KOG3616|consen 927 AYRI 930 (1636)
T ss_pred HHHH
Confidence 4333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-07 Score=91.07 Aligned_cols=213 Identities=10% Similarity=-0.029 Sum_probs=122.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHH
Q 043955 338 AQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRN 417 (835)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 417 (835)
.-.|+.-+|...|+..+.....++.. |..+-.++....+.+.....+....+..+.+..+|..-..++.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34577777777777777665444442 55555567777777888888888888887777777777777878888888888
Q ss_pred HHHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCC
Q 043955 418 VFESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFN 494 (835)
Q Consensus 418 ~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 494 (835)
=|++...- ++.+|--+--+..+.+++++++..|++..+. ++--+..|+..-......++++.|.+.++..++..-.
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88776653 3344444444444566777778888777653 2333344555555555566666666555555543211
Q ss_pred -------CchhHHHHHHHHHHhcCChhhHHHHhhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 495 -------LEGSVASSLVDMYARCGALDIANKVFNCVQTKDL---ILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 495 -------~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
+.+.+.-+++-.--+ +++..|..+.++..+-|+ ..+-+|...-.+.|+.++|+++|++
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122222233222222 444444444444333222 2344444444444444444444444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-05 Score=85.71 Aligned_cols=362 Identities=13% Similarity=0.106 Sum_probs=211.1
Q ss_pred ccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhccccCchHHHHHHH
Q 043955 308 KCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSGLKCMSQTKEIHG 386 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~ 386 (835)
+.+.+|+|...++.....|......-...+.+.|++++|+.+|+.+.+.+..-- ...-..++.+-.. .-.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---------l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---------LQV 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------hhH
Confidence 668888888888866555554555556677889999999999999987764332 2222222222111 111
Q ss_pred HHHHhC---CCchh-HHHHHHHHHHhcCChhhHHHHHHhc--------CCCC-----chhH-----HHHHHHHHhCCChH
Q 043955 387 YIIRKG---LSDLV-ILNAIVDVYGKCGNIDYSRNVFESI--------ESKD-----VVSW-----TSMISSYVHNGLAN 444 (835)
Q Consensus 387 ~~~~~~---~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~--------~~~~-----~~~~-----~~li~~~~~~g~~~ 444 (835)
...+.. +.++. .+-...-.++..|++.+|+++++.. .+.| +..= --|.-.+...|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 112221 22333 3344456677889999999998876 1111 1111 11333556789999
Q ss_pred HHHHHHHHHhhcCCcCChhhhHhHH---HHhhcccchhhH------HHHHH-------HHHHhCCCCchhHHHHHHHHHH
Q 043955 445 EALELFYLMNEANVESDSITLVSAL---SAASSLSILKKG------KELNG-------FIIRKGFNLEGSVASSLVDMYA 508 (835)
Q Consensus 445 ~Al~lf~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a------~~i~~-------~~~~~g~~~~~~~~~~li~~y~ 508 (835)
+|.+++...++.. .+|+....... .+...-.++-.+ +..+. ......-.....-.++|+.||.
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998864 34543222211 122222222111 00100 0000111112333467777776
Q ss_pred hcCChhhHHHHhhhCCCCC-hhHHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcccCcHHHHH
Q 043955 509 RCGALDIANKVFNCVQTKD-LILWTSMI-NANG-LHGRGKVAIDLFYKMEAESFAPDHI--TFLALLYACSHSGLINEGK 583 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~~~-~~~~~~li-~~~~-~~g~~~~Al~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~ 583 (835)
. .-+.+++.-...+..- ...+.+++ .++- +.....+|.+++...-+ -.|+.. .....+.--...|+++.|.
T Consensus 321 n--k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 321 N--KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred h--hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 4 4456667666666432 22333333 3332 22357778888777766 356653 3334444567889999999
Q ss_pred HHHH--------HhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHhhcCc
Q 043955 584 KFLE--------IMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--------QIEPTA-EVWCALLGACRVHSN 646 (835)
Q Consensus 584 ~~~~--------~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~a~~~~~~ 646 (835)
+++. +.. .+.-.+.+-+.++.++.+.+.-+-|-+++.+. +-.+.- .+|.-+..--..||+
T Consensus 397 ~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9888 433 22223556677889998888655444444333 333322 245555555667899
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
.+.|...++++++.+|++....+.|.-.|+... -+.|..+
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 999999999999999999999999998888654 3444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.8e-08 Score=93.00 Aligned_cols=225 Identities=10% Similarity=0.032 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES--KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSL 475 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~ 475 (835)
--+.+..+|.+.|.+.+|.+.|+.-.+ |-+.+|--|-..|.+-.+++.|+.+|.+-++ ..|-.+||.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l--------- 293 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYL--------- 293 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhh---------
Confidence 445677777777777777777765542 5566666666777777777777777776655 356555551
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
.-....+-..++.++ |+++|++..
T Consensus 294 -------------------------~g~ARi~eam~~~~~-------------------------------a~~lYk~vl 317 (478)
T KOG1129|consen 294 -------------------------LGQARIHEAMEQQED-------------------------------ALQLYKLVL 317 (478)
T ss_pred -------------------------hhhHHHHHHHHhHHH-------------------------------HHHHHHHHH
Confidence 111222333344444 444444444
Q ss_pred HCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC-
Q 043955 556 AESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM---QIEPT- 630 (835)
Q Consensus 556 ~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~- 630 (835)
+ ..|+.+ ...++...+...++.|-|+.+++++.+- |+. +++.|..+.-++.-++++|-++.-|++. .-.|+
T Consensus 318 k--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~ 393 (478)
T KOG1129|consen 318 K--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ 393 (478)
T ss_pred h--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch
Confidence 4 233332 2233333444444555555555444422 221 3344444444444555555555555444 12243
Q ss_pred -HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 631 -AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 631 -~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.+|-.|......-||+..|.+.++-++..+|++..+|+.|+-+-++.|+.++|+.+....++
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 348999988888889999999999999999999999999999999999999999999887776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-05 Score=85.84 Aligned_cols=647 Identities=13% Similarity=0.046 Sum_probs=334.7
Q ss_pred hHhHHHHHHhcCCCCc---chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHH
Q 043955 8 VLDAEQLFDKVSQRTV---FTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLV 84 (835)
Q Consensus 8 ~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~ 84 (835)
...|...|-+..+.|+ ..|..|-..|....+...|...|+...+.. ..+..........++...+++.|..+ .+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I--~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI--CL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH--HH
Confidence 4455555555544433 468888888887778888888888877643 33445667777888888899888887 22
Q ss_pred HHhCCCCC---cchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 043955 85 LKCGYDST---DFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTN 159 (835)
Q Consensus 85 ~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 159 (835)
......|- ..-|-.+--.|.+.++...|..-|+.. -.+.|..+|..+..+|.+.|.+..|+++|.+.... .|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 21111111 111222233466778888888888876 23358889999999999999999999999988763 454
Q ss_pred hhhHHHHHHH--hhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------CCChhHHHHHHhcCCCCCcccHH
Q 043955 160 AYTFVAALQA--CEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYAR-------CGKMTEAAGVLYQLENKDSVSWN 230 (835)
Q Consensus 160 ~~t~~~ll~a--~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~~A~~~f~~~~~~d~~~~~ 230 (835)
. +|...-.+ -+..|.+.++...++.++..-- ......+.|...+.+ .|-...|...|+.-. ..+.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s-~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~ 702 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFS-LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFI 702 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHH
Confidence 3 33333333 3456788888877777664310 011111222222222 233333333333211 1111
Q ss_pred H-HHHHHHcCC----ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh---H---hHHHHHHHHHHhCCCcccccc
Q 043955 231 S-MLTGFVQND----LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNL---L---NGKELHAYAIKQGFVSDLQIG 299 (835)
Q Consensus 231 ~-li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~g~~~~~~~~ 299 (835)
. ++...+... -...|..+|-.... . .|+......+..-....+.. + .|-+.+. ....+..+...|
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchH
Confidence 1 111111100 01223333333220 0 22222222222212222222 1 1111111 111112223333
Q ss_pred chhhhhhhc----cC----ChhHHHHHHHhcC---CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 043955 300 NTLMDMYAK----CC----CVNYMGRVFYQMT---AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSV 368 (835)
Q Consensus 300 ~~Li~~y~~----~g----~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 368 (835)
..|...|.+ +| +...|...+.+.. ..+...||+|--. ...|.+.-|...|-+-... .+....+|..+
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~Nl 856 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNL 856 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheecc
Confidence 333333322 11 2234555555433 3466677776544 5556666666666554433 23344566666
Q ss_pred HHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC--------CCCchhHHHHHHHHHhC
Q 043955 369 LMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE--------SKDVVSWTSMISSYVHN 440 (835)
Q Consensus 369 l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~ 440 (835)
--.|....+.+.+.+.+..+....+.+...+-...-.-...|+.-++..+|.--. .++..-|-.-..-..++
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 6667777788888888887777777666544444444456666666666665421 13444454444455667
Q ss_pred CChHHHHHHHHHHhh---------cCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH-hCCCCchhHHH----HHHHH
Q 043955 441 GLANEALELFYLMNE---------ANVESDSITLVSALSAASSLSILKKGKELNGFIIR-KGFNLEGSVAS----SLVDM 506 (835)
Q Consensus 441 g~~~~Al~lf~~m~~---------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~----~li~~ 506 (835)
|+.++-+..-+..-. .|..-+.+.|.......-+++..+.+.....+.+. .....|...+| -+...
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL 1016 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRL 1016 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 776655544333321 12333445555555555555555555444443322 01112223333 34445
Q ss_pred HHhcCChhhHHHHhhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHhcccCcHHHHH
Q 043955 507 YARCGALDIANKVFNCVQT-KDLILWTSMINANGLHGRGKVAIDLFYKMEAES-FAPDH-ITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd~-~t~~~ll~a~~~~g~~~~a~ 583 (835)
+...|.++.|...+..... -|..+-..-+.. -..|+++++++.|++...-- -.-|. +....++.+-..++.-+.|+
T Consensus 1017 ~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~ 1095 (1238)
T KOG1127|consen 1017 ELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQ 1095 (1238)
T ss_pred hhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHH
Confidence 5666777777777665542 122222222222 34678999999999988621 12232 23444555556677777777
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHH-------hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 584 KFLEIMRCDYQLDPWPEHYACLVDLL-------GRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 584 ~~~~~m~~~~~i~p~~~~y~~lv~~l-------~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
..+-..... -.|+....-++.-++ +-.+-++|=..+++.=.+--++.....+ .+..+|+-.......++
T Consensus 1096 ~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr 1171 (1238)
T KOG1127|consen 1096 FLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQR 1171 (1238)
T ss_pred HHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHH
Confidence 655443321 123444433332222 2222233322222211111112212222 24567888889999999
Q ss_pred HHhcCCCCCCchHHHHHHHH
Q 043955 657 LLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 657 ~~~l~p~~~~~~~~l~~~y~ 676 (835)
..-..|.|+..|.+|++=|+
T Consensus 1172 ~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1172 AVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHhcCCCChHHHHHHHHHHH
Confidence 99999999999999986554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.6e-07 Score=93.08 Aligned_cols=204 Identities=15% Similarity=0.028 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..|..+...|.+.|+.++|...|++..+ ..|+ +...++.+...|
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~----------------------------------~~~a~~~lg~~~ 108 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALA--LRPD----------------------------------MADAYNYLGIYL 108 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC----------------------------------CHHHHHHHHHHH
Confidence 3466666667777777777777777665 2343 345677888888
Q ss_pred HhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 043955 508 ARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKK 584 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 584 (835)
...|++++|...|++..+ .+..+|..+...+...|++++|++.|++..+ ..|+.......+..+...++.++|..
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKE 186 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHH
Confidence 899999999999987753 3567888899999999999999999999988 56765422222223445678999999
Q ss_pred HHHHhhhcCCCCCChhHHHHHHHHHhhcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 585 FLEIMRCDYQLDPWPEHYACLVDLLGRANHL--EEAYQFVRSM-Q----IEP-TAEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 585 ~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~--~eA~~~~~~m-~----~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
.|...... ..|+...+ .++..+ .|++ +++.+.+.+. + ..| ....|..|...+...|+.+.|+..+++
T Consensus 187 ~l~~~~~~--~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYEK--LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHhh--CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99765422 23332222 333333 3444 3333333321 1 122 234788899999999999999999999
Q ss_pred HHhcCCC-CCCchHHHHHH
Q 043955 657 LLELDPG-NPGNYVLISNV 674 (835)
Q Consensus 657 ~~~l~p~-~~~~~~~l~~~ 674 (835)
+++++|. ...+-..+..+
T Consensus 262 Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 262 ALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHhCCchHHHHHHHHHHH
Confidence 9999974 44444444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-05 Score=79.60 Aligned_cols=409 Identities=14% Similarity=0.075 Sum_probs=192.4
Q ss_pred HHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCC
Q 043955 201 LIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQ-VCTVNAVSASGRLGN 276 (835)
Q Consensus 201 li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~ 276 (835)
+...|.+.|++++|..++..+.+ ++...|-.+...+.-.|.+.+|..+-... |+. -.-..++...-+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence 34455566666666666655543 23344444444444455566665554332 222 223334444445566
Q ss_pred hHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCC--CcccHHH-HHHHHHhcCChHHHHHHHHHH
Q 043955 277 LLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ--DFISWTT-IIAGYAQNNCHLKALELFRTV 353 (835)
Q Consensus 277 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m 353 (835)
-+.-.++|..+...- .-.-+|..+.--.-.+.+|..++.++... +-...|. |.-+|.+...++-+.+++.--
T Consensus 137 Ek~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 555555555543321 11122222222223455666666665443 2333333 233455556666665555554
Q ss_pred HHcCCCCChhHHHHHHHHhcc--ccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhc-----CChhhHHHHHHhcCCCC
Q 043955 354 QLEGLDADVMIIGSVLMACSG--LKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKC-----GNIDYSRNVFESIESKD 426 (835)
Q Consensus 354 ~~~g~~p~~~t~~~ll~a~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~f~~~~~~~ 426 (835)
++. -||+ |+..=|.+|.. .=+-..+.+-...+...+-..-. .+.-.++. ..-+.|.+++-.+...=
T Consensus 212 L~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~----f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 212 LRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP----FIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred HHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch----hHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 443 2333 23333333322 21222222222222222211100 11111111 12234444433222211
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhh-----cccchhhHHHHHHHHHHhCCCCchhHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAAS-----SLSILKKGKELNGFIIRKGFNLEGSVAS 501 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 501 (835)
+..--.++--|.+.++..+|..+..++.- ..|-++..-.+..+-. +-..++-|.+.+..+-.++..-|
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD----- 357 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD----- 357 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc-----
Confidence 12222344456778888888887766532 2333333322222211 11122333333333333333222
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINE 581 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 581 (835)
.+..-.+|.+.+--..++++.+-.++....- +..|.+--..+..|....|.+.+
T Consensus 358 -------------------------TIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 358 -------------------------TIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred -------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHH
Confidence 2233445555555555666666666665553 22333333345666777777777
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHH-HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHhhcCchhHHHHHHHHHH
Q 043955 582 GKKFLEIMRCDYQLDP-WPEHYA-CLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALL-GACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p-~~~~y~-~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll-~a~~~~~~~~~a~~~~~~~~ 658 (835)
|.++|-.+. +.+. +-..|. .+..+|.+.|+.+-|.+++-++.-..+..+.--|+ .-|.+.+.+=-|-+++..+-
T Consensus 412 aEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777776554 2221 223333 34456777777777877777775444444433333 56888888888888888887
Q ss_pred hcCCC
Q 043955 659 ELDPG 663 (835)
Q Consensus 659 ~l~p~ 663 (835)
.+||.
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 88874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-05 Score=84.87 Aligned_cols=241 Identities=13% Similarity=0.056 Sum_probs=153.4
Q ss_pred CCCCCChHhHHHHHHhcCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC-C--------CCCCCccHHHHHHHHhccC
Q 043955 2 YGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVL-G--------ISVDAFTFPCVIKACAMLK 72 (835)
Q Consensus 2 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~~~~~~~~~ll~~~~~~~ 72 (835)
|.--|+.+.|.+....+. +-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+ .+=..+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 445688888876655544 3457999999999999888887777666431 1 1222 33333334445778
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHH
Q 043955 73 DLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQ 152 (835)
Q Consensus 73 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 152 (835)
.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..-.=..||.....-+-..++.+.|++.|++-.
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 899999998877653 34455677889999999887643110112355555555566788888888876532
Q ss_pred ----------HCCC---------CCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 043955 153 ----------RVGL---------VTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTE 213 (835)
Q Consensus 153 ----------~~g~---------~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 213 (835)
.... .-|...|...-.-+-..|+.+.|..++..... |-+++...+-.|++++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 1110 11233333333344455666666666554432 3456666667788888
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 043955 214 AAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRL 274 (835)
Q Consensus 214 A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 274 (835)
|-++-++- .|......+.+.|-..|++.+|..+|.+.+ +|...|+.|-..
T Consensus 957 Aa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEn 1006 (1416)
T KOG3617|consen 957 AARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEN 1006 (1416)
T ss_pred HHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 87776653 466667778888889999999999998775 466666666443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.3e-05 Score=83.08 Aligned_cols=369 Identities=14% Similarity=0.052 Sum_probs=209.2
Q ss_pred HHHHHHHHhCCCCCc-chHHHHHHHHHhcCChHHHHHHHhhcC--CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 043955 79 KIHGLVLKCGYDSTD-FIVNSLVAMYAKCYDFRKARQLFDRMG--EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVG 155 (835)
Q Consensus 79 ~i~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 155 (835)
.++..+....+.++- ..|..|-..|...-+...|.+.|+..- ..-|..+|......|++..+++.|..+.-.--+.
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk- 555 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK- 555 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-
Confidence 333333333333432 467888888888778889999998872 2246788999999999999999999883332221
Q ss_pred CCC-ChhhHHHHHH--HhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHH
Q 043955 156 LVT-NAYTFVAALQ--ACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSM 232 (835)
Q Consensus 156 ~~p-~~~t~~~ll~--a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~l 232 (835)
.| -...++.+-+ .+-..++...+..-+....+..+ .|...|..|..+|.++|++..|.++|++...-++.+|-..
T Consensus 556 -a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 556 -APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred -chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 11 1111111112 23344455555555554444332 2777899999999999999999999988877555544332
Q ss_pred H---HHHHcCCChhHHHHHHHHHHHC------CCCCCcchHHHHHHHHhccCC-------hHhHHHHHHHHHHhCCCccc
Q 043955 233 L---TGFVQNDLYCKAMQFFRELQGA------GQKPDQVCTVNAVSASGRLGN-------LLNGKELHAYAIKQGFVSDL 296 (835)
Q Consensus 233 i---~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~~~-------~~~a~~i~~~~~~~g~~~~~ 296 (835)
. ..-+..|.+.+|++.+...... +..--..++..+...+...|- ++...+.+.-.+......+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 2 2345678888888888766432 111111233333333322222 22223333322222211111
Q ss_pred cccc-------------------hhhhhhhc----cCCh---h---HHHHHHHhcC--CCCcccHHHHHHHHHh----c-
Q 043955 297 QIGN-------------------TLMDMYAK----CCCV---N---YMGRVFYQMT--AQDFISWTTIIAGYAQ----N- 340 (835)
Q Consensus 297 ~~~~-------------------~Li~~y~~----~g~~---~---~A~~~f~~m~--~~~~~~~~~li~~~~~----~- 340 (835)
..|- .++..+.+ .+.. | -+.+.+-.-. .-+..+|..++..|.+ .
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC
Confidence 1111 11111111 1111 1 0111110000 0145677777665554 1
Q ss_pred ---CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHH
Q 043955 341 ---NCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRN 417 (835)
Q Consensus 341 ---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 417 (835)
.+...|+..+.+-.+. ..+...+-..|...+..|++..+...+-......+....+|..+.-.+.+..+++.|..
T Consensus 794 et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred CcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhH
Confidence 1234567777666553 44555555556666555665555444444444444556688888888888899999999
Q ss_pred HHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHH
Q 043955 418 VFESIES---KDVVSWTSMISSYVHNGLANEALELFYL 452 (835)
Q Consensus 418 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~ 452 (835)
.|..... .|.+.|-.+.-.....|+.-+++.+|..
T Consensus 872 af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9987764 3677887776666778888888888876
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-06 Score=91.21 Aligned_cols=234 Identities=18% Similarity=0.171 Sum_probs=137.4
Q ss_pred HHHHHHhccccCchHHHHHHHHHHHh-----CC--Cchh-HHHHHHHHHHhcCChhhHHHHHHhcCC-------C----C
Q 043955 366 GSVLMACSGLKCMSQTKEIHGYIIRK-----GL--SDLV-ILNAIVDVYGKCGNIDYSRNVFESIES-------K----D 426 (835)
Q Consensus 366 ~~ll~a~~~~~~~~~~~~i~~~~~~~-----~~--~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~-------~----~ 426 (835)
..+-..|...|+++.|.+++...++. |. +... ..+.+..+|...+++++|..+|+++.. + -
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33444455555555555555554443 22 2222 556788899999999999999887642 2 1
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchh---HHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGS---VASSL 503 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~---~~~~l 503 (835)
..+++.|...|.+.|++++|...+++..+- ... ..| .+... ..+.+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~--~~~-~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEK--LLG-ASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHH--hhc-cChHHHHHHHHHH
Confidence 245666777888889999988888776541 000 000 11111 12344
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLI 579 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~ 579 (835)
...+...+++++|..++.. |++++.. -+.++. -++..+...+.+.|.+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~------------------------al~i~~~----~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQK------------------------ALKIYLD----APGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred HHHHHHhcchhHHHHHHHH------------------------HHHHHHh----hccccchHHHHHHHHHHHHHHHhcch
Confidence 4455555666666655542 1222221 122333 2455566666666666
Q ss_pred HHHHHHHHHhhhcC-----CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHhhc
Q 043955 580 NEGKKFLEIMRCDY-----QLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--------QIEPTAE-VWCALLGACRVH 644 (835)
Q Consensus 580 ~~a~~~~~~m~~~~-----~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~~-~~~~ll~a~~~~ 644 (835)
+||.++|++..+.. +..+. ..+++.|...+.+.++.++|.+++.+. |--|+.. ++..|...|+..
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 66666666554321 22332 456667777777777777777666554 4455554 788888888888
Q ss_pred CchhHHHHHHHHHH
Q 043955 645 SNKELGEIVAKKLL 658 (835)
Q Consensus 645 ~~~~~a~~~~~~~~ 658 (835)
||.|.|+...++++
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888888888877
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.8e-05 Score=80.78 Aligned_cols=301 Identities=14% Similarity=0.108 Sum_probs=151.2
Q ss_pred hCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHhHHHHHH
Q 043955 207 RCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKP-DQVCTVNAVSASGRLGNLLNGKELHA 285 (835)
Q Consensus 207 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~ 285 (835)
+.+..++|...++.....|..+...-...+-+.|++++|+++|+.+...+..- |...-..++.+-+... + .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~----~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ----V----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh----H----H
Confidence 45666777666664443343343334445566677777777777775543221 1111111111111100 0 0
Q ss_pred HHHHhCCCccccccchh---hhhhhccCChhHHHHHHHhc--------CCCCcc----------cHHHHHHHHHhcCChH
Q 043955 286 YAIKQGFVSDLQIGNTL---MDMYAKCCCVNYMGRVFYQM--------TAQDFI----------SWTTIIAGYAQNNCHL 344 (835)
Q Consensus 286 ~~~~~g~~~~~~~~~~L---i~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~ 344 (835)
.+......| ..+|..+ ...+...|++..|+++++.. ...|.. .---|.-.+...|+-+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 011111111 1122222 22344556677777666655 111111 1123444567789999
Q ss_pred HHHHHHHHHHHcCCCCCh---hHHHHHHHHhccccCchHH------HHH--------HHHHHHhCCCchhHHHHHHHHHH
Q 043955 345 KALELFRTVQLEGLDADV---MIIGSVLMACSGLKCMSQT------KEI--------HGYIIRKGLSDLVILNAIVDVYG 407 (835)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~~~~------~~i--------~~~~~~~~~~~~~~~~~li~~y~ 407 (835)
+|.+++...++... +|. .++..=|.+...-.++..+ +.. ...+.+........-+.|+.+|.
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888753 333 2222223333333332221 111 11111111112224455666664
Q ss_pred hcCChhhHHHHHHhcCCCC-chhHHHHHHHHHh--CCChHHHHHHHHHHhhcCCcCCh--hhhHhHHHHhhcccchhhHH
Q 043955 408 KCGNIDYSRNVFESIESKD-VVSWTSMISSYVH--NGLANEALELFYLMNEANVESDS--ITLVSALSAASSLSILKKGK 482 (835)
Q Consensus 408 k~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~--~g~~~~Al~lf~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~ 482 (835)
+..+.++++-...+... ...+.+++....+ ...+..|.+++...-.. .|+. ......+.-....|+++.|.
T Consensus 321 --nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred --hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 45677888877777543 3344455444322 23466777777766553 3443 23333444456778888888
Q ss_pred HHHH--------HHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhC
Q 043955 483 ELNG--------FIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCV 523 (835)
Q Consensus 483 ~i~~--------~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 523 (835)
.++. .+.+.+.. +.+..+++.+|.+.++.+.|..++++.
T Consensus 397 ~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 8887 44444433 345577888888888888888887654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-06 Score=82.31 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=128.7
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHH-HhhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALS-AASSLSILKKGKELNGFIIRKGFNLEGSVASSLV 504 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 504 (835)
|+....++...+...|+..+|...|.+.+. +.|+.++-.-+-. -....|+++....+..++...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~------------- 295 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK------------- 295 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-------------
Confidence 566677777888888888888888887765 4454433110000 011222333222222222111
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGK 583 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 583 (835)
.+.....|-.-....-..++++.|+.+-++-++ +.|+.+ .+..-..++...|++++|.
T Consensus 296 -------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 296 -------------------VKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred -------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHH
Confidence 011222333333333445556666666655555 344442 3444444555566666666
Q ss_pred HHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHH----HhCCCCCCHHHHHHHHHH--Hhh-cCchhHHHHHHH
Q 043955 584 KFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFV----RSMQIEPTAEVWCALLGA--CRV-HSNKELGEIVAK 655 (835)
Q Consensus 584 ~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~----~~m~~~p~~~~~~~ll~a--~~~-~~~~~~a~~~~~ 655 (835)
-.|+..+ .+.| +.+.|.-++..|...|++.||.-.- +.|| .++.+. +|+++ |.- -.--|.|+..++
T Consensus 355 IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~L-tL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 355 IAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSL-TLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhh-hhhcceeeccCchhHHHHHHHHH
Confidence 6666554 4555 4566666666666666666655332 2222 122222 22221 111 112255566666
Q ss_pred HHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCE-----------EEEEEeCCCCCcCc
Q 043955 656 KLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNK-----------IHSFIARDKSHSES 724 (835)
Q Consensus 656 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~-----------~~~f~~~d~~hp~~ 724 (835)
+.+.++|...++-+.++.++...|+++|+..+.+. .++-.|.|+.=.+-|+ .-.|...=+..|+.
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~----~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK----HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH----HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 66666666666666666666666666666555332 1122333332100000 00111112356788
Q ss_pred HHHHHHHHHHHHHh
Q 043955 725 DEIYKKLAEITEKL 738 (835)
Q Consensus 725 ~~i~~~l~~l~~~~ 738 (835)
+.-.+-|+.|++++
T Consensus 505 ~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 505 KRTLRGLRLLEKSD 518 (564)
T ss_pred hHHHHHHHHHHhcc
Confidence 77777788777666
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-07 Score=86.74 Aligned_cols=228 Identities=10% Similarity=0.067 Sum_probs=140.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcC
Q 043955 331 TTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCG 410 (835)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g 410 (835)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||..+-.+|.+......|..+++..+..-+.+.....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 46778889999999999998887775 4555566666666666666666666666555554444444444444444444
Q ss_pred ChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHH
Q 043955 411 NIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGF 487 (835)
Q Consensus 411 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 487 (835)
+.++|.+++....+ .|+.+.-.+..+|.-.++++-|+..|+++++.|+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~----------------------------- 355 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA----------------------------- 355 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----------------------------
Confidence 44444444444332 1222333333344444444444444444444332
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--H
Q 043955 488 IIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI--T 565 (835)
Q Consensus 488 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~--t 565 (835)
.+...|+.+.-+|.-.++++-++.-|++.+..-..|+.. .
T Consensus 356 --------------------------------------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 356 --------------------------------------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred --------------------------------------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 133344455555556667777777777777665556653 4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT 630 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 630 (835)
|..+.......|+..-|.+.|+-.. .-+| ..+.|+.+.-+-.|.|++++|..+++.. ...|+
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL---~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLAL---TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHh---ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 6666666777888888888888655 2345 4778888888888999999999888876 34454
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=84.14 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=101.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 043955 548 IDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM- 625 (835)
Q Consensus 548 l~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 625 (835)
..+|++.++ +.|+. +.....++...|++++|..+|+... .+.| +...|..++.++.+.|++++|...+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666666 56775 4456677889999999999999877 6678 5888899999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 626 QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 626 ~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...| ++..|..+..++...|+.+.|+..+++++++.|+++.++...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5566 56688888888889999999999999999999999999988887654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-06 Score=78.46 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=157.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC 510 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 510 (835)
.-+.-+|.+.|++..|..-+++.++. .|+ +.-++..+...|.+.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs----------------------------------~~~a~~~~A~~Yq~~ 82 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPS----------------------------------YYLAHLVRAHYYQKL 82 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHHHHc
Confidence 44566899999999999999988873 344 234567778889999
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHH
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFL 586 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~ 586 (835)
|..+.|.+.|+... .++-...|....-++..|++++|...|++......-|.. .||..+.-+-.++|..+.|..+|
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 99999999998755 457778899999999999999999999999975433332 57888887778999999999999
Q ss_pred HHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 587 EIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 587 ~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+... .+.|+ +.....|.+..-..|++-+|..+++.. ...+.+...--.+..-+..||.+.+-+.-.++..+-|.
T Consensus 163 ~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 163 KRAL---ELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHH---HhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9776 56774 778888999999999999999999887 34466665544555667789999998888888888887
Q ss_pred CCC
Q 043955 664 NPG 666 (835)
Q Consensus 664 ~~~ 666 (835)
...
T Consensus 240 s~e 242 (250)
T COG3063 240 SEE 242 (250)
T ss_pred cHH
Confidence 544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00018 Score=77.48 Aligned_cols=434 Identities=16% Similarity=0.125 Sum_probs=250.5
Q ss_pred CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHH
Q 043955 173 SSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFF 249 (835)
Q Consensus 173 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 249 (835)
.+.+..+..+.+.+++ ++.....+....--.....|+.++|......-.. ++.+.|..+.-.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3444555555555554 2222222222222234456788888777765544 46678998888888888999999999
Q ss_pred HHHHHCCCCCCcch-HHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcc
Q 043955 250 RELQGAGQKPDQVC-TVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFI 328 (835)
Q Consensus 250 ~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 328 (835)
+.... +.||... +.-+--.-++.++++.........+ +.....-.
T Consensus 99 ~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL--------------------------------ql~~~~ra 144 (700)
T KOG1156|consen 99 RNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL--------------------------------QLRPSQRA 144 (700)
T ss_pred HHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH--------------------------------HhhhhhHH
Confidence 98876 3455432 1111111112222222211111111 11223456
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHH------hccccCchHHHHHHHHHHHhCCCchhHHHH
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSVLMA------CSGLKCMSQTKEIHGYIIRKGLSDLVILNA 401 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 401 (835)
+|..++-++.-.|+...|..+.....+.. -.|+...+...... ....|.++.+.+......+.-.+....-..
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 89999999999999999999999987765 35666666544333 344566666665555444443344446777
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC--CCchhHHHHHH-HHHhCCChHHHH-HHHHHHhhcC---CcCChhhhHhHHHHhhc
Q 043955 402 IVDVYGKCGNIDYSRNVFESIES--KDVVSWTSMIS-SYVHNGLANEAL-ELFYLMNEAN---VESDSITLVSALSAASS 474 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~-~~~~~g~~~~Al-~lf~~m~~~g---~~p~~~t~~~ll~a~~~ 474 (835)
-.+.+.+.+++++|..++..+.. ||.+.|.-... ++.+-.+.-+++ .+|....+.- ..|-.... +++ ..
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl-svl---~~ 300 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL-SVL---NG 300 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH-HHh---Cc
Confidence 78899999999999999998876 55555555444 332344444555 5666554421 11211111 111 11
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChh---h-HHHHhhh--------------CCCCChhHHHH--H
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALD---I-ANKVFNC--------------VQTKDLILWTS--M 534 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~---~-A~~~f~~--------------~~~~~~~~~~~--l 534 (835)
..-.+....++....+.|+++ ++..+...|-.-...+ + +..+... ...|....|+. +
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 222233334455555566543 3333333332211111 0 1111111 12345566766 5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC-CChhHHHHHHHHHhhc
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLD-PWPEHYACLVDLLGRA 612 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~-p~~~~y~~lv~~l~r~ 612 (835)
+..|-..|+++.|+...+.... -.|..+ -|..-..-+.|+|++++|..+++... +++ ||...=+--+.-+.|+
T Consensus 378 aqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~---elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ---ELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH---hccchhHHHHHHHHHHHHHc
Confidence 6778889999999999999987 478775 35566677899999999999999887 333 3433333456677899
Q ss_pred CCHHHHHHHHHhCCCCC-CH--------HHHHHHH--HHHhhcCchhHHHHH
Q 043955 613 NHLEEAYQFVRSMQIEP-TA--------EVWCALL--GACRVHSNKELGEIV 653 (835)
Q Consensus 613 g~~~eA~~~~~~m~~~p-~~--------~~~~~ll--~a~~~~~~~~~a~~~ 653 (835)
.+.++|.++.....-+- ++ -+|--+- .++..+|++.+|..=
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 99999999876652111 21 1354443 456777777666443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=92.77 Aligned_cols=213 Identities=11% Similarity=0.049 Sum_probs=147.5
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDL 550 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l 550 (835)
+.|++..|.-.++..++.. +.+...|--|.-.-+..++-..|+..+.+..+ .|....-+|...|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455666666666655543 22345555555555555555556666655442 3555566666666666666677777
Q ss_pred HHHHHHCCCCCCHHHHHHH--------HHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 043955 551 FYKMEAESFAPDHITFLAL--------LYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 551 ~~~m~~~g~~Pd~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~ 622 (835)
++.-+.. +|-.+-...- -....+......-.++|-.+....+..++++.+.+|+-+|--.|.+++|.+.|
T Consensus 376 L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7666542 2211100000 01112222344455566666555566678889999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 623 RSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 623 ~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+.+ ..+| |..+||-|........+.+.|+.+|.++++|.|........|+-.|...|.++||.+..-
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 988 8889 556899999999888999999999999999999999999999999999999999988753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-06 Score=86.71 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=96.4
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----ccCcH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACS----HSGLI 579 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~----~~g~~ 579 (835)
..+|...|++++|.+++... .+.......+..|.+.++.+.|.+.++.|.+ ...|.+ ..-+..|+. -...+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhH
Confidence 34566778888888777765 4555666677778888888888888888876 445543 222333221 12357
Q ss_pred HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCch-hHHHHHHHH
Q 043955 580 NEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNK-ELGEIVAKK 656 (835)
Q Consensus 580 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~-~~a~~~~~~ 656 (835)
.+|..+|+.+...+ .+++...+.+.-+....|+++||++++++. ...| |+.++-.++..+...|+. +.+.+...+
T Consensus 184 ~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 77888888776554 345666777777777777777777777665 4444 344555665555555655 566677777
Q ss_pred HHhcCCCC
Q 043955 657 LLELDPGN 664 (835)
Q Consensus 657 ~~~l~p~~ 664 (835)
+....|++
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 77777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0017 Score=71.53 Aligned_cols=542 Identities=14% Similarity=0.110 Sum_probs=287.2
Q ss_pred CcchHHHHHH--HHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCCh
Q 043955 92 TDFIVNSLVA--MYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRV-G--------LVTNA 160 (835)
Q Consensus 92 ~~~~~~~Li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~ 160 (835)
|..+..++++ .|..-|+.+.|.+-...+. +...|..|.+.+.+..+.+-|.-.+..|... | -.|+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 5556666665 4777899999888777663 4568999999999988888887776666431 1 1222
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCC-CcccHHHHHHHHHcC
Q 043955 161 YTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENK-DSVSWNSMLTGFVQN 239 (835)
Q Consensus 161 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-d~~~~~~li~~~~~~ 239 (835)
.+=.-+.-....+|.+++|+.++..-.+. ..|=..|-..|.+++|.++-+.-..- =..+|.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22222222345678899999999888774 34556677889999998887653321 112444445555556
Q ss_pred CChhHHHHHHHHHH----------HCC---------CCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccc
Q 043955 240 DLYCKAMQFFRELQ----------GAG---------QKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300 (835)
Q Consensus 240 g~~~~A~~l~~~m~----------~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 300 (835)
++.+.|++.|++-. ... -..|...|.---......|+.+.|..++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 77888888776532 111 011222222222333445666666666655443 44
Q ss_pred hhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchH
Q 043955 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQ 380 (835)
Q Consensus 301 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 380 (835)
+++...+-.|+.++|-++-++-. |.....-+...|-..|++.+|+.+|.+.+ +|...|+.|-..+--+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d- 1010 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKD- 1010 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHH-
Confidence 56677777788888888776543 55566678888999999999999998875 4566666654433222
Q ss_pred HHHHHHHHHHhCCCchh-----------HHHHHHHHHHhcCChhhHHHHHHhcCC--------------CCchhHHHHHH
Q 043955 381 TKEIHGYIIRKGLSDLV-----------ILNAIVDVYGKCGNIDYSRNVFESIES--------------KDVVSWTSMIS 435 (835)
Q Consensus 381 ~~~i~~~~~~~~~~~~~-----------~~~~li~~y~k~g~~~~A~~~f~~~~~--------------~~~~~~~~li~ 435 (835)
++.....-.+..+.. -...-+..|-|.|.+.+|.++--+-.+ .|+...+--..
T Consensus 1011 --~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1011 --RLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred --HHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 222222333322211 122345567777777777665322221 24444444444
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHh--CCCC---chhHHHHHHHHHHhc
Q 043955 436 SYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRK--GFNL---EGSVASSLVDMYARC 510 (835)
Q Consensus 436 ~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~---~~~~~~~li~~y~k~ 510 (835)
-|..+.++++|..++-..++ |...+.-|...+ ..-..++-+.|... +..+ -..+...+.+.+.+.
T Consensus 1089 FF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 55667777777777655443 222333332211 11112222222111 1111 123344455566666
Q ss_pred CChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHH----------------HHHHHHHHHH---CCCCCCHHHHHHHHH
Q 043955 511 GALDIANKVFNCVQTKDLILWTSMINANGLHGRGKV----------------AIDLFYKMEA---ESFAPDHITFLALLY 571 (835)
Q Consensus 511 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~----------------Al~l~~~m~~---~g~~Pd~~t~~~ll~ 571 (835)
|.+..|-+-|...-.+= .-+.++.+.|+.++ |-..++..-- ..+--|.+||..-..
T Consensus 1159 G~Yh~AtKKfTQAGdKl-----~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgq 1233 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQAGDKL-----SAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQ 1233 (1416)
T ss_pred cchHHHHHHHhhhhhHH-----HHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcch
Confidence 66666666554432210 01222233333221 1111111100 001123455555555
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-HHHHH----------HHH
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAE-VWCAL----------LGA 640 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~-~~~~l----------l~a 640 (835)
|+-+.+.+-.+.... .+++|...-.+ .|-++||.+.+.++..+.+.. .+++| |..
T Consensus 1234 afd~LanFY~~cAqi-----------Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~ 1299 (1416)
T KOG3617|consen 1234 AFDHLANFYKSCAQI-----------EIEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRK 1299 (1416)
T ss_pred hHHHHHHHHHHHHHh-----------hHHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 544444333222211 12333222222 244666666666653333222 23332 333
Q ss_pred HhhcC-chhHHHHHHHHHHhcCCCCC------CchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCcee
Q 043955 641 CRVHS-NKELGEIVAKKLLELDPGNP------GNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSS 703 (835)
Q Consensus 641 ~~~~~-~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s 703 (835)
.++.+ |...+.+-.+-++ .+|..+ ..|-+|..-|....+|..|-+..+.|+. |.|-.+
T Consensus 1300 ~q~~~eD~~~~i~qc~~ll-eep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~----k~p~~~ 1364 (1416)
T KOG3617|consen 1300 LQIMKEDAADGIRQCTTLL-EEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK----KVPNVD 1364 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHh-hCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh----cCCccc
Confidence 33332 3333333343333 355544 3477888999999999999999998886 556443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-06 Score=85.18 Aligned_cols=208 Identities=10% Similarity=0.072 Sum_probs=142.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043955 430 WTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYAR 509 (835)
Q Consensus 430 ~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 509 (835)
++.+-..+...++.++|+.+..+++. +.|+..|. ++.....+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yta----------------------------------W~~R~~iL~~ 83 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIR--LNPGNYTV----------------------------------WHFRRLCLEA 83 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH----------------------------------HHHHHHHHHH
Confidence 33344455566777788888777776 45554432 2222333334
Q ss_pred cC-ChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHH
Q 043955 510 CG-ALDIANKVFNCVQ---TKDLILWTSMINANGLHGRG--KVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEG 582 (835)
Q Consensus 510 ~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~--~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a 582 (835)
.| .+++++..++.+. .++..+|+.....+.+.|+. ++++.++++|++ ..|+ ..+|.....++.+.|+++++
T Consensus 84 L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 84 LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHH
Confidence 45 4677777777654 34566777666666666653 677888888887 5564 45777777788888889999
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC----chh
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLLGRA---NH----LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS----NKE 648 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~---g~----~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~----~~~ 648 (835)
+++++.+. .++| +...|+....++.+. |. ++++.+++.++ ...| |...|+.+.+.+..++ +..
T Consensus 162 L~~~~~~I---~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 162 LEYCHQLL---EEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHH---HHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 99988887 4456 455666655555444 32 35677777555 6677 5569999999988743 346
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
.+.....++++.+|+++-+...|+.+|...
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 688888999999999999999999999863
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.9e-05 Score=81.77 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=95.1
Q ss_pred ChhHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHH
Q 043955 527 DLILW--TSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHY 602 (835)
Q Consensus 527 ~~~~~--~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y 602 (835)
....| .-+...|...|+.++|++..++.++ ..|..+ .|..-...+.|.|++++|.+.++..+ .+++ |...=
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiN 265 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYIN 265 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHH
Confidence 33345 4456778889999999999999998 578865 56677778999999999999999887 6666 44444
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC---CCCCCH------HHHHH--HHHHHhhcCchhHHHHHHHHHHh
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSM---QIEPTA------EVWCA--LLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~------~~~~~--ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
+-.+..+.|+|++++|.+.+... +..|-. .+|-- ...++...|+...|..-+..+.+
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55677888999999999988766 222311 14533 34668888999999877766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-05 Score=80.97 Aligned_cols=369 Identities=14% Similarity=0.053 Sum_probs=226.9
Q ss_pred hhhhccCChhHHHHHHHhcC---CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhccccCch
Q 043955 304 DMYAKCCCVNYMGRVFYQMT---AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADV-MIIGSVLMACSGLKCMS 379 (835)
Q Consensus 304 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~ 379 (835)
+.....|+++.|...|-... .+|.+.|..=..+|+..|++++|++=-.+-++ +.|+. -.|+-.-.+....|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 34567899999999998753 44888899999999999999999987766655 56765 46778888889999999
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhH-HHHHHh------cC-CC------CchhHHHHHHHHHhC-----
Q 043955 380 QTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYS-RNVFES------IE-SK------DVVSWTSMISSYVHN----- 440 (835)
Q Consensus 380 ~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A-~~~f~~------~~-~~------~~~~~~~li~~~~~~----- 440 (835)
.|..-+..-++..+.+....+.|.+++. .+.+ -..|.. +. .| ....|..++..+-++
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999999999899999999982 1111 111110 00 00 112233333332221
Q ss_pred -----CChHHHHHHHHH-----HhhcC-------CcCCh----------------------hhhHhHHHHhhcccchhhH
Q 043955 441 -----GLANEALELFYL-----MNEAN-------VESDS----------------------ITLVSALSAASSLSILKKG 481 (835)
Q Consensus 441 -----g~~~~Al~lf~~-----m~~~g-------~~p~~----------------------~t~~~ll~a~~~~~~~~~a 481 (835)
.+...|.-.+.. +...| ..|.. .-..-+.++.-+..++..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 111122111111 00111 11210 0012233334444455555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChh----------HHHHHHHHHHhcCChHHHHHHH
Q 043955 482 KELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLI----------LWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 482 ~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----------~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.+-+...+... .+..-++.....|...|.+.+....-+...+..-. +..-+..+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 55555555544 45555666667777777766665554443332111 2222444666677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043955 552 YKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QIE 628 (835)
Q Consensus 552 ~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 628 (835)
++.+.....||..+ .....+++....+... -+.|. .+--.+ +.-+.+.|++.+|...+.++ ...
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhccCHHHHHHHHHHHHhcC
Confidence 88777666655432 2223344444433322 34443 122222 66677788888888888777 455
Q ss_pred C-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 629 P-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 629 p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
| |+..|+....++-..+++..|..-++..++++|+....|..-+-++....+|++|.+....-.+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 4556777777777778888888888888888888888888888888888888888877654443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.50 E-value=8e-05 Score=80.46 Aligned_cols=292 Identities=12% Similarity=-0.052 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchh---HHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChh-hhHh---
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVS---WTSMISSYVHNGLANEALELFYLMNEANVESDSI-TLVS--- 467 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~---~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~-t~~~--- 467 (835)
.+..+...|...|+.+++.+.+..... ++... .......+...|++++|.+++++.... .|+.. .+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 555566666667777776555554332 22222 222233556788899999999888764 45443 2221
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCC
Q 043955 468 ALSAASSLSILKKGKELNGFIIRKGFNLE-GSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGR 543 (835)
Q Consensus 468 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 543 (835)
........+....+.+.... .....|+ ......+...+..+|++++|.+.|++..+ .+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 11111123444444444433 1122222 34445666788899999999999987663 456778888899999999
Q ss_pred hHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh-hH--HHHHHHHHhhcCCHHH
Q 043955 544 GKVAIDLFYKMEAESF-APDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP-EH--YACLVDLLGRANHLEE 617 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~-~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~--y~~lv~~l~r~g~~~e 617 (835)
+++|+..+++...... .|+. ..+..+...+...|+.++|..+|+.........+.. +. ...+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999999887422 1232 234456677889999999999999875321111111 11 1123333344443222
Q ss_pred HHHH---HHhC-CCCCC---HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC---------CCCCchHHHHHHHHhcCCc
Q 043955 618 AYQF---VRSM-QIEPT---AEVWCALLGACRVHSNKELGEIVAKKLLELDP---------GNPGNYVLISNVFAASRKW 681 (835)
Q Consensus 618 A~~~---~~~m-~~~p~---~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p---------~~~~~~~~l~~~y~~~g~~ 681 (835)
+.+. ...- +..|+ .........++...|+.+.|....+.+....- ......++.+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 11121 12223445556677889888888887755321 1345668889999999999
Q ss_pred hHHHHHHHHHHc
Q 043955 682 KDVEQVRMRMRG 693 (835)
Q Consensus 682 ~~a~~~~~~m~~ 693 (835)
++|.+.......
T Consensus 324 ~~A~~~L~~al~ 335 (355)
T cd05804 324 ATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999887655443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0017 Score=79.69 Aligned_cols=150 Identities=8% Similarity=-0.099 Sum_probs=65.8
Q ss_pred hhccCChhHHHHHHHhcCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHH
Q 043955 306 YAKCCCVNYMGRVFYQMTAQDFIS--WTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKE 383 (835)
Q Consensus 306 y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 383 (835)
|...|++.+|..........+... ...........|+++.+..++..+.......+..........+...++.+.+..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 444566666655555544332111 011112334456666666665554221111111111222223344566666666
Q ss_pred HHHHHHHhCCC-----c---h-hHHHHHHHHHHhcCChhhHHHHHHhcCC----CCc----hhHHHHHHHHHhCCChHHH
Q 043955 384 IHGYIIRKGLS-----D---L-VILNAIVDVYGKCGNIDYSRNVFESIES----KDV----VSWTSMISSYVHNGLANEA 446 (835)
Q Consensus 384 i~~~~~~~~~~-----~---~-~~~~~li~~y~k~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A 446 (835)
....+...-.. + . .....+...+...|++++|...+++... .+. ..++.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 66554432110 0 0 1222233444556666666666654321 111 1233344445556666666
Q ss_pred HHHHHHHhh
Q 043955 447 LELFYLMNE 455 (835)
Q Consensus 447 l~lf~~m~~ 455 (835)
...+.+...
T Consensus 511 ~~~~~~al~ 519 (903)
T PRK04841 511 LAMMQQTEQ 519 (903)
T ss_pred HHHHHHHHH
Confidence 666666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-05 Score=81.60 Aligned_cols=58 Identities=5% Similarity=-0.048 Sum_probs=49.0
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCC---CchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNP---GNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|....+.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34456677999999999999999987654 68899999999999999999988877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.9e-05 Score=81.77 Aligned_cols=123 Identities=13% Similarity=0.066 Sum_probs=92.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCA-LLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~-ll~a~ 641 (835)
++..+-..+.+.|++++|+++.+... ...|+ ++-|..-..+|-++|++++|.+.++.. .+.+..--.|+ ..-.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 33445566789999999999999887 56796 899999999999999999999999988 55553333344 44456
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCc----------hHHHHHHHHhcCCchHHHHHHHHH
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGN----------YVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~----------~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
...|+++.|+..+.....-+- ++.. .+--++.|.+.|+|..|.+-....
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678999999999987655442 2221 244577899999999998765443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.7e-06 Score=78.71 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=104.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRAN 613 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g 613 (835)
+.+|...|+++.+..-.+++.. |. ..++..+..+++...++... ...| +.+.|..++.+|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L---~~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKI---RANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCC
Confidence 3456677777665433322221 11 01223555666666666555 4567 5888888888999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCc--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 614 HLEEAYQFVRSM-QIEP-TAEVWCALLGA-CRVHSN--KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 614 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~a-~~~~~~--~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
++++|.+.+++. .+.| ++.+|..+..+ +...|+ .+.|..+++++++++|+++..+.+|+..+...|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999888887 5666 45577777776 356666 588999999999999999999999999999999999999998
Q ss_pred HHHHcC
Q 043955 689 MRMRGS 694 (835)
Q Consensus 689 ~~m~~~ 694 (835)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 887653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00031 Score=75.79 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=92.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHH-HHHhccccCchHHHHHHHHHHHhCCCchhHHH---HHH
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSV-LMACSGLKCMSQTKEIHGYIIRKGLSDLVILN---AIV 403 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l-l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~li 403 (835)
.|..+...+...|+.+++...+.+..... ..++......+ ...+...|+.+.+..++..+++..+.+...+. .+.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 87 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence 34444445555555666555544443321 11222111111 11234456666666666666666555443333 122
Q ss_pred HHHHhcCChhhHHHHHHhcCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhh
Q 043955 404 DVYGKCGNIDYSRNVFESIESKDVV---SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKK 480 (835)
Q Consensus 404 ~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 480 (835)
......+..+.+.+.++.....+.. .+..+...+...|++++|...+++.... .|+.
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~------------------ 147 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDD------------------ 147 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC------------------
Confidence 2222234455555555443222222 2233344667777777777777777763 3443
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CCh--hHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 481 GKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----KDL--ILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 481 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~--~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
...+..+...|...|++++|...+++..+ ++. ..|..+...+...|+.++|+.+|++
T Consensus 148 ----------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 148 ----------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred ----------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22334445555555566665555554432 111 2344455556666666666666666
Q ss_pred HH
Q 043955 554 ME 555 (835)
Q Consensus 554 m~ 555 (835)
..
T Consensus 212 ~~ 213 (355)
T cd05804 212 HI 213 (355)
T ss_pred Hh
Confidence 54
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.2e-06 Score=83.29 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +..-
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~q---------- 168 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQ---------- 168 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHH----------
Confidence 3444455677788888888887765 45555666788889999999999999999863 3333 2222
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
+..+.+..+.-.+.+.+|..+|+++.+ +++.+.|.+..++.+.|++++|.+++++.
T Consensus 169 ---------------------La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 169 ---------------------LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp ---------------------HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 234455555555678899999988765 36677888888999999999999999998
Q ss_pred HHCCCCCCH-HHHHHHHHHhcccCcH-HHHHHHHHHhhhcCC
Q 043955 555 EAESFAPDH-ITFLALLYACSHSGLI-NEGKKFLEIMRCDYQ 594 (835)
Q Consensus 555 ~~~g~~Pd~-~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~ 594 (835)
.. ..|+. .|+..++.++.+.|.. +.+.+++..++..+.
T Consensus 228 l~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 228 LE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp CC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 76 45554 5777788888888888 667788888885543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0004 Score=73.35 Aligned_cols=114 Identities=18% Similarity=0.087 Sum_probs=79.8
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCc
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSN 646 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~ 646 (835)
...+.+.|++..|...+..+.. ..| |...|+.-.-+|.+.|.+.+|++-.+.. ...|+.. .|--=..+.+..++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 4556677777777777776663 346 4667777777777777777777655554 4455544 55555566677789
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
.+.|..++++.++++|++......+...+.....-+...+
T Consensus 442 ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee 481 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEE 481 (539)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHH
Confidence 9999999999999999998888888887776433333333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-07 Score=58.62 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhhc
Q 043955 88 GYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM 119 (835)
Q Consensus 88 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 119 (835)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.4e-05 Score=87.70 Aligned_cols=235 Identities=12% Similarity=0.170 Sum_probs=160.4
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCC--------CchhHHHHHHHHHhCCChHHHHHHHHHHhhc
Q 043955 385 HGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESK--------DVVSWTSMISSYVHNGLANEALELFYLMNEA 456 (835)
Q Consensus 385 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~ 456 (835)
|...+...+.+...|-..+......++++.|++++++.... -.-.|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq- 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ- 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-
Confidence 34444444444445555555555556666666665554321 122455555544444444444555555443
Q ss_pred CCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHH
Q 043955 457 NVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK---DLILWTS 533 (835)
Q Consensus 457 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~ 533 (835)
. ...-.++..|...|.+.+..++|.++|+.|.++ ....|..
T Consensus 1526 ----------------------------------y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~ 1569 (1710)
T KOG1070|consen 1526 ----------------------------------Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIM 1569 (1710)
T ss_pred ----------------------------------h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHH
Confidence 1 122456788999999999999999999999864 5678999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhh
Q 043955 534 MINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY-ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGR 611 (835)
Q Consensus 534 li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r 611 (835)
.+..+.++.+.+.|-.++++.++.=.+-.++-|.+... --.+.|+.+.|+.+|+.....| | ..+.|+..+|+-.+
T Consensus 1570 y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay---PKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY---PKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC---ccchhHHHHHHHHHHc
Confidence 99999999999999999999998422223555554332 2357799999999999887664 5 57889999999999
Q ss_pred cCCHHHHHHHHHhC---CCCCCH--HHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 612 ANHLEEAYQFVRSM---QIEPTA--EVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 612 ~g~~~eA~~~~~~m---~~~p~~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
.|..+.+..+|++. .+.|-- ..+.-.|.--..|||-+..+.+-.++.|
T Consensus 1647 ~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1647 HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 99999999999987 344422 2566667777788887777777666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0059 Score=64.73 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHhhc-CCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChhhHHHHh
Q 043955 443 ANEALELFYLMNEA-NVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNL-EGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 443 ~~~Al~lf~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
.+.....+++.... .++| ..+|...+...-+..-++.|+.++..+.+.+..+ ++++.++++..|+ .++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44455566665542 2333 3567777777778888888888888888887777 7888888888775 47778888888
Q ss_pred hhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCC-
Q 043955 521 NCVQT--KD-LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQ- 594 (835)
Q Consensus 521 ~~~~~--~~-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 594 (835)
+--.+ +| +.--+..+.-+...++-..|..+|++.+..++.||. ..|...|.-=+.-|+.....++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 75443 23 334456677777778888888888888877666665 4577777777777888877777776666655
Q ss_pred -CCCChhHHHHHHHHHhhcCCHHH
Q 043955 595 -LDPWPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 595 -i~p~~~~y~~lv~~l~r~g~~~e 617 (835)
.+|...+-...++.|+=.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 55555555556666655554433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-05 Score=81.73 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=148.6
Q ss_pred cccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHH
Q 043955 374 GLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELF 450 (835)
Q Consensus 374 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf 450 (835)
+.|++..|.-.++..++..+.+...|--|...-+..++-..|+..+.+..+ .|....-+|...|...|.-.+|+..|
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 445566666666666666666666777776666666666666666666554 24455555566677777777788777
Q ss_pred HHHhhcCCc--------CChhhhHhHHHHhhcccchhhHHH-HHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhh
Q 043955 451 YLMNEANVE--------SDSITLVSALSAASSLSILKKGKE-LNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFN 521 (835)
Q Consensus 451 ~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~-i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 521 (835)
+.-.....+ ++..+-.. ........+....+ +++.....+...|+.++..|.-.|--.|+++.|...|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 776442210 01110000 11222223333343 34444556767889999999999999999999999999
Q ss_pred hCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhh
Q 043955 522 CVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMR 590 (835)
Q Consensus 522 ~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (835)
.... .|...||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.++||.++|-+..
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 8763 3788999999999999999999999999999 899985 45567778999999999999886543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.6e-07 Score=57.38 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=18.1
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 594 QLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 594 ~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
|+.||..+|+.||+.|+++|++++|.+++++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.4e-06 Score=75.29 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=87.0
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 594 QLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 594 ~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
.++|+ ++...+..+...|++++|.+.++.. ...| +...|..+..+|...|+.+.|+..++++++++|+++..+..+
T Consensus 21 ~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45565 4567889999999999999999987 5666 566899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHc
Q 043955 672 SNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 672 ~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.+|...|+.++|.+.....-+
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998776554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-05 Score=73.87 Aligned_cols=155 Identities=11% Similarity=0.070 Sum_probs=118.2
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEG 582 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a 582 (835)
+-.|.+.|+.+......+.+..+. ..|...++.++++..+++.+. ..|+. ..|..+...+...|+.++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788888777654443322211 012235677888888888887 45554 5688888899999999999
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLL-GRANH--LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
...|+... .+.| +...+..+..++ .+.|+ .++|.+++++. ...| +..++..|..++..+|+.+.|+..+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999777 6778 588899999865 77787 59999999988 6667 455888888889999999999999999
Q ss_pred HHhcCCCCCCchHHH
Q 043955 657 LLELDPGNPGNYVLI 671 (835)
Q Consensus 657 ~~~l~p~~~~~~~~l 671 (835)
+++++|.+..-+-.+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999999877665444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.023 Score=69.96 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=42.4
Q ss_pred HHhcCChhhHHHHhhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhc
Q 043955 507 YARCGALDIANKVFNCVQTKDL-------ILWTSMINANGLHGRGKVAIDLFYKMEAE----SFAPDH-ITFLALLYACS 574 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~Pd~-~t~~~ll~a~~ 574 (835)
+...|+.+.|.+.+.....+.. ..+..+..++...|+.++|..++++.... |..++. .+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3445666666666654443211 11234455556666666666666665542 222221 23334444555
Q ss_pred ccCcHHHHHHHHHHhh
Q 043955 575 HSGLINEGKKFLEIMR 590 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~ 590 (835)
..|+.++|...+....
T Consensus 743 ~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 743 QQGRKSEAQRVLLEAL 758 (903)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=71.37 Aligned_cols=122 Identities=9% Similarity=0.049 Sum_probs=100.1
Q ss_pred CCC-C-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 594 QLD-P-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 594 ~i~-p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
+++ | +.+..-.+...+...|++++|.++++.. -+.| +..-|-.|...|+..|+.+.|+.++.+++.++|+||.+|.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 555 5 4677777888899999999999999988 6677 4558999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
.++.+|...|+.+.|.+-.+...... ..||+-.+|..+-+.....+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHh
Confidence 99999999999999999877554321 14577767766666554444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.5e-05 Score=88.23 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=140.9
Q ss_pred hhhHhHHH-Hhhcccchh-hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC------CCChhHHHHH
Q 043955 463 ITLVSALS-AASSLSILK-KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ------TKDLILWTSM 534 (835)
Q Consensus 463 ~t~~~ll~-a~~~~~~~~-~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~------~~~~~~~~~l 534 (835)
.|...++. +.+..|.-+ .|+++|.++.+ ...+.|.+..+..-+-+.. ..++..+-.|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 34444444 445566544 44677776642 2233444443333332222 2357788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRA 612 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~ 612 (835)
.....+.|+.++|+.+++...+ +.||.. .+..+..++.+.+.+++|...+++.. ...| +..++..+..+|.+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998 899985 57778889999999999999999776 6688 488999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 613 NHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
|+++||.++|++. .-.|+ +.+|-++..+.+..|+.+.|..+++++++...+-+..
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999998 23444 6689999999999999999999999999987665444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-05 Score=84.12 Aligned_cols=196 Identities=14% Similarity=0.086 Sum_probs=145.2
Q ss_pred CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043955 492 GFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY 571 (835)
Q Consensus 492 g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~ 571 (835)
+++|-....-.+.+.+.++|-+.+|..+|+++ ..|--.|..|...|+..+|..+..+-.+ -+||..-|..++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45566666677777888888888888888764 4677777788888877777777776665 4677777777776
Q ss_pred HhcccCcHHHHHHHHHHhhh-------------------------cCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 572 ACSHSGLINEGKKFLEIMRC-------------------------DYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~-------------------------~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.......++.|+++++.... ...+.| ...+|-...-+.-+.++++.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 66555556666665543221 123445 3556666666677788899888888776
Q ss_pred -CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 626 -QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 626 -~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
..+||.. .|++|-.++-++++-.+|....+++++-+-++...+....-+-...|.|++|.+....|.+-
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7788765 89999999999999999999999999988777777777777778999999999988777553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=70.92 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=80.4
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
...| +......++..+...|++++|.+.++.. ...| ++..|..+...+...|+.+.|...++++++++|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4566 3566777888888888888888888876 5555 45677777778888889999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHc
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+|...|++++|.+..+...+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999888765554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-06 Score=56.45 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD 562 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd 562 (835)
++||+||.+|++.|+.++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00033 Score=73.34 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=84.7
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~ 648 (835)
.....|..++|+..++.+. .-.| ++.-....++++.++|+.++|.+.++++ ...|+ ...|-++..++...|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~---~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLI---AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 3456677777777777766 3356 3555566777888888888888887777 56665 456777777777788888
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
.|+...+..+.-+|+|+..|.+|+..|...|+-.++...+.++
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 8888888888888888888888888777777777766666544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0026 Score=63.32 Aligned_cols=307 Identities=14% Similarity=0.071 Sum_probs=171.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH---HHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcC
Q 043955 334 IAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSV---LMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCG 410 (835)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g 410 (835)
-+.+..+|++..|+..|....+. .|+ .|..+ ...|...|.-..|..=+..++...++-....-.-...+.|.|
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~--dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEG--DPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcC--Cch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 34444555555555555555432 122 22222 122333444444444444444444432222223334455777
Q ss_pred ChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH
Q 043955 411 NIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR 490 (835)
Q Consensus 411 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 490 (835)
.++.|..-|+.+...++.- +....++.+ +.+.+++.. ....+......|+...+......+++
T Consensus 121 ele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~~---------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHWV---------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHHH---------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 7777777776665432210 000111111 111111110 11112222333444444444444443
Q ss_pred hCCCCchhHHHHHHHHHHhcCChhhHHHHhhh---CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--
Q 043955 491 KGFNLEGSVASSLVDMYARCGALDIANKVFNC---VQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT-- 565 (835)
Q Consensus 491 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t-- 565 (835)
.. +.|...+..-.+.|.+.|.+..|..-... +...|....--+-..+-+-|+.+.++...++-++ +.||+-.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCF 260 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHH
Confidence 21 33555666667778888888888765543 4455667777777778888999999998888887 7888732
Q ss_pred -HHH--------HHH--HhcccCcHHHHHHHHHHhhhcCCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043955 566 -FLA--------LLY--ACSHSGLINEGKKFLEIMRCDYQLDPW-----PEHYACLVDLLGRANHLEEAYQFVRSM-QIE 628 (835)
Q Consensus 566 -~~~--------ll~--a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 628 (835)
|.- +-+ .....+.+.++.+-.+... ..+|. ...+..+-.++...|++-||++..++. .+.
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 211 111 2234555666665555443 23343 344445566777889999999888776 778
Q ss_pred CC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 629 PT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 629 p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
|| +.++.--..|+..--.+|.|+.-++++.+++|+|..+
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 86 5577777788888888999999999999999987544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.9e-05 Score=75.08 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQT--K-DL---ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI----TF 566 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~---~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~----t~ 566 (835)
....-.+...|.+.|++++|...|+++.. | +. .+|..+...|...|++++|+..|+++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 44556666777788888888888886653 2 22 3667778888888888888888888887 345432 34
Q ss_pred HHHHHHhccc--------CcHHHHHHHHHHhhhcCCCCCChh---------------HHHHHHHHHhhcCCHHHHHHHHH
Q 043955 567 LALLYACSHS--------GLINEGKKFLEIMRCDYQLDPWPE---------------HYACLVDLLGRANHLEEAYQFVR 623 (835)
Q Consensus 567 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~i~p~~~---------------~y~~lv~~l~r~g~~~eA~~~~~ 623 (835)
..+..++... |..++|.+.|+.+...+.-.+... +...+.+.+.+.|++++|...++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4444444433 678888888888775432222110 11256778889999999999887
Q ss_pred hC----CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 624 SM----QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 624 ~m----~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
+. |-.|. +..|..+..++...|+.+.|...++.+....|
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 76 44443 45888999999999999999998887766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-06 Score=55.52 Aligned_cols=35 Identities=37% Similarity=0.568 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDS 462 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~ 462 (835)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=83.08 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=140.6
Q ss_pred hHHHHHHHHHhCCChHHHH-HHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHH-HHHHHHHHhCCCCchhHHHHHHHH
Q 043955 429 SWTSMISSYVHNGLANEAL-ELFYLMNEANVESDSITLVSALSAASSLSILKKGK-ELNGFIIRKGFNLEGSVASSLVDM 506 (835)
Q Consensus 429 ~~~~li~~~~~~g~~~~Al-~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~li~~ 506 (835)
..+.+=.+.+.-|..++|- ++.++..+ ++.+.+.......+. ++.+++ ..+..++..+-.|.+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~La~i 95 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYV--RRYPHTELFQVLVARA 95 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHH--HhccccHHHHHHHHHH
Confidence 3333444566677777774 45555443 233333322222221 122222 3455668888889999
Q ss_pred HHhcCChhhHHHHhhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCcHHHH
Q 043955 507 YARCGALDIANKVFNCVQT--K-DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL-ALLYACSHSGLINEG 582 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~-~ll~a~~~~g~~~~a 582 (835)
....|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..||..+.. .+..++.+.|..++|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHH
Confidence 9999999999999998774 3 567889999999999999999999999998 689887654 455677899999999
Q ss_pred HHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 043955 583 KKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLG 639 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~ 639 (835)
..+|+.... -.|+ ...+..+..+|-..|+.++|...+++. -..|.+.-++.+++
T Consensus 174 ~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 174 DACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 999999884 3564 788999999999999999999999988 34555556666654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.025 Score=61.57 Aligned_cols=233 Identities=10% Similarity=0.036 Sum_probs=115.3
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHH
Q 043955 35 SNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQ 114 (835)
Q Consensus 35 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 114 (835)
..+++...+.+.+...+ +.+-...|....--.+...|+.++|......-++..+. +.+.|..+--.+-...++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 34555555665555554 22223333333333334456666665554444442221 23445555444555556666666
Q ss_pred HHhhc--CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCC-
Q 043955 115 LFDRM--GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQ- 191 (835)
Q Consensus 115 ~f~~m--~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~- 191 (835)
.|... -.+.|...|.-+--.=++.|+++.....-....+.. .-....|.....+.--.|+...+..+.+...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66654 222344444444433444555555555444444421 11233444444444555666666666666655542
Q ss_pred CCchhHHHHHH------HHHHhCCChhHHHHHHhcCCCC--Ccc-cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc
Q 043955 192 NLQVYVANALI------AMYARCGKMTEAAGVLYQLENK--DSV-SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQV 262 (835)
Q Consensus 192 ~~~~~~~~~li------~~y~~~g~~~~A~~~f~~~~~~--d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (835)
.|+...+.-.. ....+.|..+.|.+-+...... |-. .-.+...-+.+.++.++|..++..+... .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 33333332222 2234556666666665554331 211 2233445566777777777777777764 56766
Q ss_pred hHHHHHHHHh
Q 043955 263 CTVNAVSASG 272 (835)
Q Consensus 263 t~~~ll~a~~ 272 (835)
-|...+..|.
T Consensus 254 ~Yy~~l~~~l 263 (700)
T KOG1156|consen 254 DYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHHH
Confidence 6655554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00021 Score=74.41 Aligned_cols=172 Identities=10% Similarity=0.083 Sum_probs=130.1
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccc
Q 043955 502 SLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHG-RGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHS 576 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~ 576 (835)
.+-..+.+.+..++|....+.+.+ .+..+|+.....+...| ..++++..++++.+ ..|+. .+|..-...+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHc
Confidence 334445667888999999887764 35567887777777777 67999999999998 45554 3465544445555
Q ss_pred Cc--HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---Cch-
Q 043955 577 GL--INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH---SNK- 647 (835)
Q Consensus 577 g~--~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---~~~- 647 (835)
|. .+++..+++.+. .++| +...|+....++.+.|++++|+++++++ ...| +..+|+......... |..
T Consensus 120 ~~~~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 65 367788888777 6678 5788999999999999999999999998 5556 566888877665543 222
Q ss_pred ---hHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 648 ---ELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 648 ---~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
+......+++++++|+|..+|.-+..+|...
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 4566677799999999999999999999773
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0012 Score=64.43 Aligned_cols=342 Identities=10% Similarity=0.025 Sum_probs=188.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCC--CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHhhcC
Q 043955 97 NSLVAMYAKCYDFRKARQLFDRMGE--KEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAA-LQACEDS 173 (835)
Q Consensus 97 ~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~ 173 (835)
++.+....+..++++|.+++..-.+ +++....+.|-.+|-...++..|-+.++++-.. .|....|..- .+.+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3444444555556666665554422 124444555555566666666666666665543 2322222110 1112222
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHH--HHHhCCChhHHHHHHhcCCC-CCcccHHHHHHHHHcCCChhHHHHHHH
Q 043955 174 SFETLGMEIHAATVKSGQNLQVYVANALIA--MYARCGKMTEAAGVLYQLEN-KDSVSWNSMLTGFVQNDLYCKAMQFFR 250 (835)
Q Consensus 174 ~~~~~a~~l~~~~~~~g~~~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~~ 250 (835)
+.+..|..+...+... ++...-..-+. ..-..+++..++.+.++.+. .+..+.+......-+.|++++|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 3333333333333211 11110011111 12246788889999999884 566666666666778999999999999
Q ss_pred HHHHC-CCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccc----hhhhhhhccCChhHHHHHHHhcCCC
Q 043955 251 ELQGA-GQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN----TLMDMYAKCCCVNYMGRVFYQMTAQ 325 (835)
Q Consensus 251 ~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~m~~~ 325 (835)
...+- |..| ...|+..+ +..+.++...|.....+++.+|+...+...- -.++.-+-.+-...+...
T Consensus 169 aAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa------- 239 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA------- 239 (459)
T ss_pred HHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-------
Confidence 88764 4555 35566555 4456688899999999999998765443221 111110000000000000
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVD 404 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~ 404 (835)
-+..+|.-...+.+.++++.|.+.+.+|.-.. -..|++|+-.+.-. -..+++..+..-+..++...+-...++..++-
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLl 318 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLL 318 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHH
Confidence 01234444555677888888888888885332 45677776554322 12344666666677777777655667888888
Q ss_pred HHHhcCChhhHHHHHHhcCCC-----CchhHHHHHHHHHhCCChHHHHHHHHHH
Q 043955 405 VYGKCGNIDYSRNVFESIESK-----DVVSWTSMISSYVHNGLANEALELFYLM 453 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~Al~lf~~m 453 (835)
.|+|..-++-|-.++.+-+.- +...|+.+=+.-.-.-.+++|++-+..+
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999998888776542 3334443222222234566666554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00021 Score=83.08 Aligned_cols=197 Identities=16% Similarity=0.166 Sum_probs=164.9
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQTK--------DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL 567 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~ 567 (835)
+...|-..+......++++.|++++++.... -...|.++++.....|.-+...++|+++.+ +---...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHH
Confidence 4566777788888899999999999987632 245899999999999999999999999987 222234588
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhh
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP---TAEVWCALLGACRV 643 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~a~~~ 643 (835)
.|+.-|...+..++|-++|+.|.+.++ -....|...++.|.|..+-++|.++++++ ..-| ...+..-....-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999988 55678999999999999999999999876 3333 34466667777789
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCC
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
+|+.|+|+.+++-++.-.|.....|..+.++=..+|.-+.++.+.+..-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998999999999998887776554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00034 Score=67.50 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 043955 559 FAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCA 636 (835)
Q Consensus 559 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 636 (835)
..|+......+-.++.-.|+-+.+..+.......+.. +.+.....+....+.|++.+|...+.+. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPK--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcc--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4665433355666777788888887777655422211 3445555888899999999999999988 44567889999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..+|-+.|+++.|+..+.+++++.|.++.++..|+-.|.-.|+.++|..+......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988776654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=79.94 Aligned_cols=210 Identities=15% Similarity=0.124 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
..-.+...+.++|-...|..+|+++ ..|--.|-.|...|+..+|..+..+-.+ -+||+.-|..+.+..-...-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 7778899999999999999999987 5788889999999999999998888877 47888888888777777777
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
+++|.++..+.... ...++.......++++++.+-|+.-.+ --..+|-....+..+.++.+.|.+.|..-
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 77777766654322 111111222235788888888875443 24567888888888888888888888888
Q ss_pred HHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 555 EAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 555 ~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.. ..||.. .|+.+-.++.+.|.-.+|...+.+..+- +-+| ...|-...-+...-|.+++|.+.+.++
T Consensus 546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n~~~-w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-NYQH-WQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-CCCC-CeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77 678774 5888888888888888888888766532 3222 222333344556778888888888776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00079 Score=70.62 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=118.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY-ACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
....|-...-.+-..|..++|+..++.++. -.||.+-|..+.. -+...+++++|.+.|+.+. ...|+ .-..-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHH
Confidence 444555555566688999999999999888 5888877766554 5789999999999999888 56775 555667
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
+.++|...|+..||...++.. ..+-|+..|..|..+|...||...+..+. +..|+-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHH
Confidence 889999999999999999887 33347889999999999999998886654 45788899999
Q ss_pred HHHHHHHHHHcCC
Q 043955 683 DVEQVRMRMRGSG 695 (835)
Q Consensus 683 ~a~~~~~~m~~~~ 695 (835)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999887777654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=68.69 Aligned_cols=176 Identities=18% Similarity=0.104 Sum_probs=128.2
Q ss_pred HHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 043955 501 SSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG 577 (835)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 577 (835)
.-+-..|--.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|-+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 445566666788777777776644 245566777888888999999999999998873 3455678888888899999
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 578 LINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSMQI-EP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
+.++|..-|.... .+.| ++..++.|.-.|.-.|++++|..++...-. .+ |..+-..|.-+....|+++.|+.+.
T Consensus 149 r~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999888776 5566 467788888888888999999999888732 23 6777888888888899999988887
Q ss_pred HHHHhcCCCCCC-chHHHHHHHHhcCCch
Q 043955 655 KKLLELDPGNPG-NYVLISNVFAASRKWK 682 (835)
Q Consensus 655 ~~~~~l~p~~~~-~~~~l~~~y~~~g~~~ 682 (835)
.+-+. |+.+. ....|.++....|-|.
T Consensus 226 ~~e~~--~~~~~~~~~~l~~~~~~~~~~~ 252 (257)
T COG5010 226 VQELL--SEQAANNVAALRAAASQSGAWT 252 (257)
T ss_pred ccccc--chhHhhHHHHHHHhhcccchhH
Confidence 65443 33322 2334555555555553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0052 Score=61.27 Aligned_cols=292 Identities=14% Similarity=0.077 Sum_probs=181.6
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHH---HHHHhCCChHHHHHHHHH
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMI---SSYVHNGLANEALELFYL 452 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~Al~lf~~ 452 (835)
+.+..|..-+-.+++..+.+-..+-.-...|...|+-..|..-|++..+--+.-+.+-| ..+.+.|..++|..=|+.
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 44444444444444444443334444455666667666666666655442222222222 235567777777777777
Q ss_pred HhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChh
Q 043955 453 MNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLI 529 (835)
Q Consensus 453 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~ 529 (835)
.++. .|+.-+ ...+..++...++-..+.. .+..+.-.|+...|......+.+ -|..
T Consensus 132 vl~~--~~s~~~---~~eaqskl~~~~e~~~l~~----------------ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 132 VLQH--EPSNGL---VLEAQSKLALIQEHWVLVQ----------------QLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HHhc--CCCcch---hHHHHHHHHhHHHHHHHHH----------------HHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 7663 233222 2333333333333222222 22334556888888888887764 4777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh----hHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP----EHYAC 604 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~----~~y~~ 604 (835)
.+..-..+|...|....|+.=++..-+ +..|. .++.-+-.-+...|+.+.++.-.+... .++|+- .+|-.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHH
Confidence 888889999999999999988887766 44443 445555555677888888887766554 566752 23332
Q ss_pred H---HH------HHhhcCCHHHHHHHHHhC-CCCCCH--HHH---HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 605 L---VD------LLGRANHLEEAYQFVRSM-QIEPTA--EVW---CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 605 l---v~------~l~r~g~~~eA~~~~~~m-~~~p~~--~~~---~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
+ +. ...+.+++.++++--++. ..+|.. +.+ ..+-..++.-+++-.|++...++++.+|+|..++.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 2 21 233556777777666554 556652 223 33334456678999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHc
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.-+..|....+|++|..-.+...+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999999999999877765544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=52.70 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAP 561 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P 561 (835)
+.+||++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3588999999999999999999999999988887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0002 Score=75.89 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccC
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSG 577 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g 577 (835)
+..+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.+.. .|+. ..+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34556677777899999999999999888888888899998999999999999999974 5544 34444445688999
Q ss_pred cHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043955 578 LINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEPT 630 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~ 630 (835)
+.+.|..+.+.+. .+.|+ -+.|..|+.+|.+.|++++|+-.++.+|+-|.
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 9999999999888 77894 78999999999999999999999999987653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=65.29 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=88.5
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043955 550 LFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-Q 626 (835)
Q Consensus 550 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 626 (835)
+|++.+. ..|+.. ....+...+...|+.++|.+.|+.... +.| +...+..++.++.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 566553 355666777888999999999988763 456 5788888999999999999999988877 4
Q ss_pred CCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 627 IEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 627 ~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 455 45677777888888999999999999999999987654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0026 Score=62.05 Aligned_cols=302 Identities=13% Similarity=0.109 Sum_probs=146.7
Q ss_pred HHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CCchhHHHH-HHHHHhCC
Q 043955 365 IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--KDVVSWTSM-ISSYVHNG 441 (835)
Q Consensus 365 ~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~~~g 441 (835)
+.+++..+.+...++.+.++...-.+..+.+....+.|..+|-...++..|-..++++.. |...-|... ...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 334444444445555555555555555555555666667777777777777777766653 333223221 23455677
Q ss_pred ChHHHHHHHHHHhhcCCcCChhhhHhHHHHh--hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHH
Q 043955 442 LANEALELFYLMNEANVESDSITLVSALSAA--SSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKV 519 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 519 (835)
.+.+|+.+...|... |+-..-..-|.+. -+.+++..++.+.++.-. +.+..+.+...-..-|.|+.++|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHH
Confidence 788888887777652 2211111111111 112233333332222211 11222222222233344555555555
Q ss_pred hhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC
Q 043955 520 FNCVQT----KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQL 595 (835)
Q Consensus 520 f~~~~~----~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 595 (835)
|+...+ .....||.-+.-| +.|+...|+++..++++.|++--.. + .-|..-++.. .++. -
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-l--------gIGm~tegiD-vrsv-----g 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-L--------GIGMTTEGID-VRSV-----G 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-c--------CccceeccCc-hhcc-----c
Confidence 544432 1233344333222 3444555555555555544431110 0 0011111110 0000 0
Q ss_pred CCChhHHHHHH-------HHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 596 DPWPEHYACLV-------DLLGRANHLEEAYQFVRSMQ----IEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 596 ~p~~~~y~~lv-------~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.|-.-|-+.++ .++.+.|+.+-|.+.+..|| -+.|+++...+.- .-..++...+.+-..-+++++|--
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCC
Confidence 01112233333 44567788888888888885 2456776655432 233455666666677778888866
Q ss_pred CCchHHHHHHHHhcCCchHHHHHHH
Q 043955 665 PGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+.++..+--+|.+..-++-|..|..
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 6677667777888877777777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00027 Score=74.93 Aligned_cols=122 Identities=19% Similarity=0.154 Sum_probs=101.8
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRV 643 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 643 (835)
..+++..+...+++++|..+|+++.+. .|+ ....|+.++...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 446777788889999999999998854 355 4556888888889999999999887 3344 55566666667889
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.++.+.|..+++++.++.|++-..|..|+.+|...|+|++|.-....+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999998877654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=51.80 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcC
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVES 460 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p 460 (835)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=72.25 Aligned_cols=95 Identities=22% Similarity=0.125 Sum_probs=71.9
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKEL 649 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~ 649 (835)
....+++++|+..|.... .+.| ++.-|..-.-+|.+-|.+++|.+-.++. .+.|... .|..|.-|+...|+.+.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345677777777777666 6677 4555666677788888888888777766 6777655 88888889999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHH
Q 043955 650 GEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~ 670 (835)
|+++|+++++++|+|..+...
T Consensus 168 A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHH
Confidence 999999999999988744333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0027 Score=73.77 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
|-.-++..++.+.+..+++.+++++|.|..+..-|+..|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334445555555555566666666655555555555444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.3e-05 Score=49.28 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESF 559 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 559 (835)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4e-05 Score=48.85 Aligned_cols=31 Identities=42% Similarity=0.633 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCC
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANV 458 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~ 458 (835)
++||+||++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.21 Score=56.82 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=109.2
Q ss_pred CChHhHHHHHHhcCCC-CcchHHHHHHHH--HhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHH
Q 043955 6 GSVLDAEQLFDKVSQR-TVFTWNAMLGAY--VSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHG 82 (835)
Q Consensus 6 g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~ 82 (835)
+++..|....++..++ ....|...+.++ .+.|..++|..+++.....+.. |..|...+-..|...+..+++..+++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455555555554432 223344455544 3567777777777766554433 66677777777777777777777777
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhcCChHH----HHHHHhhcCCCCCeeeHHHHHHHHHhC-CChh---------HHHHHH
Q 043955 83 LVLKCGYDSTDFIVNSLVAMYAKCYDFRK----ARQLFDRMGEKEDVVLWNSIISAYSAS-GQCL---------EALGLF 148 (835)
Q Consensus 83 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~----A~~~f~~m~~~~~~~~~n~li~~~~~~-g~~~---------~A~~l~ 148 (835)
+..... |+......+..+|++-+++.+ |.+++...|. .--.-|+ +++.+.+. ...+ -|.+.+
T Consensus 102 ~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 102 RANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWS-VISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHH-HHHHHHHhccCCcccccchhHHHHHHHH
Confidence 776543 445566666667777665533 4455555554 2233343 33333322 1111 133344
Q ss_pred HHHHHCC-CCCChhhHHHHHHHhhcCCChhHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC
Q 043955 149 REMQRVG-LVTNAYTFVAALQACEDSSFETLGMEIHAATV-KSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN 223 (835)
Q Consensus 149 ~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 223 (835)
+.+.+.+ -.-+..-.-.-+..+...+.+++|..++..-. ..-...+...-+--++++..++++.+-.++-.++..
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444332 11111111111223344556666666663322 222233444445566666666666665555444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00045 Score=73.70 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=69.5
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN 646 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~ 646 (835)
.......|++++|..+|+.+. .+.| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 344556677777777777666 4456 3666777777777777777777777766 4555 34466666667777777
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNV 674 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 674 (835)
++.|+..++++++++|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777776665555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=60.62 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=48.1
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCchhH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA----EVWCALLGACRVHSNKEL 649 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~a~~~~~~~~~ 649 (835)
.|+...+...++.+..+++-.| .....-.+...+...|++++|.+.++.. ...||. ..+-.|...+...|+.+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444333222 1222333344444445555555444444 111222 122223333444455555
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 650 GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
|...++. ..-+|-.+..+.+++++|.+.|++++|....+
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5444433 12222233445556666666666666655543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.23 Score=56.49 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=130.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHh--ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHH
Q 043955 34 VSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACA--MLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRK 111 (835)
Q Consensus 34 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 111 (835)
...+++..|+....++.+. .|+ ..|..+++++. +.|..++|..+.+.....+.. |..+...+-..|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567888999888887764 233 34667777764 788999999888877766655 77888999999999999999
Q ss_pred HHHHHhhc-CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCC-C---------hhHHH
Q 043955 112 ARQLFDRM-GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSS-F---------ETLGM 180 (835)
Q Consensus 112 A~~~f~~m-~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~---------~~~a~ 180 (835)
|..++++. ..-|+......+..+|+|.+++.+-.+.--+|-+ ..+-+.+.|=++++...... . +..|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99999988 3336655556667788887776654333333332 23345566655555433211 1 12333
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhCCChhHHHHHHhc-C----CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 043955 181 EIHAATVKSG-QNLQVYVANALIAMYARCGKMTEAAGVLYQ-L----ENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQG 254 (835)
Q Consensus 181 ~l~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (835)
...+.+++.+ ......-.-.-.......|+.++|..++.. . ..-+...-|--+.-+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444433 111111111122333455667777776622 1 112333333445556666667766666666665
Q ss_pred CC
Q 043955 255 AG 256 (835)
Q Consensus 255 ~g 256 (835)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 43
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=61.14 Aligned_cols=172 Identities=18% Similarity=0.206 Sum_probs=130.6
Q ss_pred CChhhHHHHhhhCCC--------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhcccCc
Q 043955 511 GALDIANKVFNCVQT--------KDLI-LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT---FLALLYACSHSGL 578 (835)
Q Consensus 511 g~~~~A~~~f~~~~~--------~~~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t---~~~ll~a~~~~g~ 578 (835)
.+.++..+++.++.. ++.. .+..++-+....|+.+-|...++++... + |...- +.+++ +-..|.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~--lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAML--LEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHH--HHHhhc
Confidence 567888888877652 2222 3344455556788999999999999885 3 66532 22222 456799
Q ss_pred HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHH
Q 043955 579 INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAK 655 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~ 655 (835)
+++|.+++++..++ +| +...|--=+-++-..|+--+|++-+..- .|-.|...|.-|...+...|+++.|.-.+|
T Consensus 102 ~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999999855 47 5666776677777788877888777666 566788999999999999999999999999
Q ss_pred HHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 656 KLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 656 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+++=+.|.++-.+..|+.++.-.|--+...--|+
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999888887555444444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00083 Score=59.12 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=51.5
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhh
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRV 643 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~ 643 (835)
.......|++++|...|+.+...+.-.| ....+..++.++.+.|++++|.+.++.. ...|+ ..+|..+..++..
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 3334444555555555554443321111 1234444555666666666666655554 22222 3345555556666
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCc
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.|+.+.|...++++++..|+++..
T Consensus 89 ~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred hCChHHHHHHHHHHHHHCcCChhH
Confidence 677777777777777777765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00068 Score=56.38 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=70.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
|..++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...++.+.|...++++++..|.++..+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888776 34443 3566667777777888899999999998888888888888889999999
Q ss_pred CchHHHHHHHHHH
Q 043955 680 KWKDVEQVRMRMR 692 (835)
Q Consensus 680 ~~~~a~~~~~~m~ 692 (835)
++++|.+......
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9888887765544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00074 Score=72.04 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=84.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhh
Q 043955 534 MINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGR 611 (835)
Q Consensus 534 li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r 611 (835)
-...+...|++++|+++|++.++ ..|+. ..|..+..++.+.|++++|+..++.+. .+.| +...|..++.+|.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 34566788999999999999998 56665 567777888999999999999999887 5678 57889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 043955 612 ANHLEEAYQFVRSM-QIEPTAEVWCALLGAC 641 (835)
Q Consensus 612 ~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~ 641 (835)
.|++++|+..+++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 6667655444445444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=5.4e-05 Score=49.11 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 654 AKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 654 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
++++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=9.4e-05 Score=60.52 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHH
Q 043955 612 ANHLEEAYQFVRSM----QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 612 ~g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
.|++++|+.+++++ |..|+...|-.+..++...|+.+.|..++++ .+.+|.++....+++.+|...|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35556666655555 3222444555566666677777777777776 666676666666778888888888888776
Q ss_pred HH
Q 043955 688 RM 689 (835)
Q Consensus 688 ~~ 689 (835)
.+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0044 Score=56.81 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYAC 604 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~ 604 (835)
|..++..+ ..|+...+...++++... .|+. .....+...+...|++++|...|+...... .+|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 33444444 366666666667777664 3332 223334455666777777777777666442 2222 223344
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCALLGACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 657 (835)
+..++...|++++|+..++..+-.+ .+..+..+...+...|+.+.|+.+++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777777776653222 3345555556677777777777777765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0034 Score=69.95 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=28.6
Q ss_pred CCCChhHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHH
Q 043955 524 QTKDLILWTSMINANGLHG-----RGKVAIDLFYKMEAESFAPDHI 564 (835)
Q Consensus 524 ~~~~~~~~~~li~~~~~~g-----~~~~Al~l~~~m~~~g~~Pd~~ 564 (835)
...|...|...+.|..... ...+|+.+|++..+ ..||..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a 376 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFT 376 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcH
Confidence 3467788888888765432 36689999999988 688863
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0013 Score=57.91 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC---CCchHHH
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN---PGNYVLI 671 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l 671 (835)
+.+...+..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+.+.|...++++++..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999888 33343 3456667788889999999999999999999986 4568899
Q ss_pred HHHHHhcCCchHHHHHHHHHHcC
Q 043955 672 SNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 672 ~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+.+|...|++++|.+..+.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999998877764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.25 Score=52.93 Aligned_cols=127 Identities=14% Similarity=0.236 Sum_probs=81.1
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 043955 22 TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVA 101 (835)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 101 (835)
|+.+|+.||+-+... ..+++.+.++++... ++.....+..-+..-.+.++++...++|+..+..-+. ...|..-++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHHH
Confidence 788999999987655 899999999999763 3444556777788888899999999999988876544 445555554
Q ss_pred HHHh--cCChHHHH----HHHh----hcCCC-CCeeeHHHHHHH---------HHhCCChhHHHHHHHHHHH
Q 043955 102 MYAK--CYDFRKAR----QLFD----RMGEK-EDVVLWNSIISA---------YSASGQCLEALGLFREMQR 153 (835)
Q Consensus 102 ~y~~--~g~~~~A~----~~f~----~m~~~-~~~~~~n~li~~---------~~~~g~~~~A~~l~~~m~~ 153 (835)
|.+ .|+...++ +.|+ +.+.. ..-..|+..|.- |..+.+++...++|+++..
T Consensus 95 -YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 95 -YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred -HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 333 23333322 2222 22221 234457766653 2333445556667777664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0047 Score=58.33 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD--HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|..+++... .+.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al---~~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL---ERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCcHHHHHH
Confidence 45677788888888999999999999887432222 2467777788888899999988888776 34553 556666
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 605 LVDLLG-------RANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 605 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
+..++. +.|++++|... .+.|...++++++++|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 666666 34444443333 345677788888888865
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0027 Score=60.15 Aligned_cols=130 Identities=11% Similarity=0.121 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD--HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYA 603 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~ 603 (835)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|..+++... .+.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---ELNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccHHHHH
Confidence 445677777778888888888888888876433332 2456677777788888888888887766 3456 356666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 604 CLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 604 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
.++.++...|+...|..-.+.. ....+.|...++++++++|++ |.-+.+.+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777777777766655433321 122577889999999999987 5555555555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=67.84 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=72.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 606 VDLLGRANHLEEAYQFVRSM-QIEPT-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
++-..+.|++.+|.+.+... .+.|+ +..|.....+...+|+.+.|..-.+++++++|.-..+|..-++.|...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999887 55554 4445555566778899999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHc
Q 043955 680 KWKDVEQVRMRMRG 693 (835)
Q Consensus 680 ~~~~a~~~~~~m~~ 693 (835)
+|++|.+-.+..-+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999887665443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00037 Score=54.43 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC-CchHHHHHHHHH
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR-KWKDVEQVRMRM 691 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m 691 (835)
++.+|..+...+...|+.+.|+..++++++++|+++..|..++.+|...| ++++|.+..++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 45678888888888888899999999999999988888889999999888 688888776543
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00059 Score=52.52 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=23.7
Q ss_pred HhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 641 CRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 641 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
+...|+++.|+..++++++.+|+++..+..++.+|...|++++|..+.+.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444455555555555555444445555555555555554444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=58.30 Aligned_cols=101 Identities=11% Similarity=0.003 Sum_probs=83.4
Q ss_pred CCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 593 YQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 593 ~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
.|+.++ .+..-....-+-..|++++|..+|.-. -..| ++..|..|...|...++.+.|...+..+.-++++||.++.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 366664 454445556667899999999999877 2334 4557889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHc
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+..|...|+.+.|........+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999998765553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00094 Score=66.26 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=89.9
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CchhHHHHHHHHHHhcCCCCCCc
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH---SNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.-+| |.+.|-.|...|.+.|+.++|...+.+. .+.| ++.+|..+..+...+ .....+..++++++.+||.|..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4468 6999999999999999999999999888 5555 455777776664433 45688999999999999999999
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCc
Q 043955 668 YVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 668 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 701 (835)
..+|+-.+...|++.+|...++.|-+..-...|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999998765443343
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=61.03 Aligned_cols=91 Identities=11% Similarity=-0.097 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
...|..++..+...|++++|+..+++. .+.|+ +.+|..+...+...|+.+.|+..++++++++|.+...+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777788888999998888776 33333 3478888888999999999999999999999999999999999
Q ss_pred HHH-------hcCCchHHHHHHH
Q 043955 674 VFA-------ASRKWKDVEQVRM 689 (835)
Q Consensus 674 ~y~-------~~g~~~~a~~~~~ 689 (835)
+|. ..|++++|....+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 999 7778776654443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.034 Score=54.03 Aligned_cols=154 Identities=17% Similarity=0.089 Sum_probs=75.2
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----cccCcH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYAC----SHSGLI 579 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~----~~~g~~ 579 (835)
...|.+.|++++|.+.......-+....|. ..+.+..+.+-|.+..++|++ + -+..|.+-|..|+ .-.+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhh
Confidence 334566667777766666533333333332 223344456666666666665 2 2333444333333 233445
Q ss_pred HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH-HHhhcCchhHHHHHHHH
Q 043955 580 NEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLG-ACRVHSNKELGEIVAKK 656 (835)
Q Consensus 580 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~-a~~~~~~~~~a~~~~~~ 656 (835)
.+|.-+|+.|..++ .|++...+.+..+....|+++||+.+++.. .-..++.+...++- +....++.+.-++-..+
T Consensus 190 qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 56666666665332 344444444555555556666666655555 11123333333332 22233344555555555
Q ss_pred HHhcCCCC
Q 043955 657 LLELDPGN 664 (835)
Q Consensus 657 ~~~l~p~~ 664 (835)
+....|+.
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 65556654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0026 Score=62.74 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=81.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCC
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANH 614 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~ 614 (835)
-+.+.+++++|+..|.+.++ +.|+. +-|..-..|+++.|..+.|++-.++.. .++|. ...|.-|.-+|.-.|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 45678899999999999998 77765 455666778999999999999888776 78885 7899999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHH
Q 043955 615 LEEAYQFVRSM-QIEPTAEVWCALL 638 (835)
Q Consensus 615 ~~eA~~~~~~m-~~~p~~~~~~~ll 638 (835)
+++|++.|++. .++|+..+|.+=|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999887 8999877654433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.003 Score=52.34 Aligned_cols=89 Identities=21% Similarity=0.118 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
|..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|.++|+.... +.| +...+..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcchhHHHHHHHH
Confidence 445555666666666777666666652 3332 3444445555555666666665555442 222 12344444444
Q ss_pred HhhcCCHHHHHHHHHh
Q 043955 609 LGRANHLEEAYQFVRS 624 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~ 624 (835)
+...|+.++|.+.+++
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4444444444444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.29 Score=50.97 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
..+..+.-+...|+...|.++-.+..-||-.-|-..|.+|+..++|++-.++... +-.++-|..++.+|...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455667789999999999999889999999999999999999877665332 2346889999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHh
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
..+|..+...+ .+..-+.+|.+||++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88888776651 2267789999999999997763
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.003 Score=59.89 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
...|..++..+.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666777777777777777777665 22222 3467777778888899999999999999999988888888888
Q ss_pred HHHhcCC
Q 043955 674 VFAASRK 680 (835)
Q Consensus 674 ~y~~~g~ 680 (835)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888777
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.026 Score=54.33 Aligned_cols=180 Identities=17% Similarity=0.108 Sum_probs=131.0
Q ss_pred CCCch-hHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043955 493 FNLEG-SVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSM---INANGLHGRGKVAIDLFYKMEAESFAPDHITFLA 568 (835)
Q Consensus 493 ~~~~~-~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ 568 (835)
..++. .++.-+.-+..-+|+.+.|...++.+..+-+-|...+ ..-+-..|++++|+++++..++.. +.|.+++.-
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 44453 4555566666789999999999998764323232222 123456799999999999999874 445678887
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS- 645 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~- 645 (835)
-+...-..|..-+|++-+....+.| --|.+.|.-+.++|...|.+++|.-.++++ -+.| ++.....|.......|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 7777777888888888877766543 237888999999999999999999999998 4555 4455666666655543
Q ss_pred --chhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 646 --NKELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 646 --~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
|.+.+...+++++++.|.+ .+.|.-||-..
T Consensus 204 ~eN~~~arkyy~~alkl~~~~---~ral~GI~lc~ 235 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKN---LRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHh---HHHHHHHHHHH
Confidence 6788999999999999965 44555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00084 Score=51.67 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=52.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
++..+.+.|++++|.+.+++. ...|+. .+|..+..++...|+.+.|...++++++++|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567888999999999999998 666754 4898999999999999999999999999999874
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0088 Score=54.47 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=79.8
Q ss_pred hhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC--
Q 043955 589 MRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM---QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG-- 663 (835)
Q Consensus 589 m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~-- 663 (835)
..++..+.|++.+-.-+...+.+.|+..||...+++. ++.-|+.+.-.|..+-..-++...|....+++.|-.|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3445567788777777888888888888888888776 56667777777777777778888888888888888874
Q ss_pred CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 664 NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 664 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|....+++..|+..|+..+|+...+..-+
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 566777888888888888888776665543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0053 Score=68.43 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHhccc-----CcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHh
Q 043955 559 FAPDHITFLALLYACSHS-----GLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRA--------NHLEEAYQFVRS 624 (835)
Q Consensus 559 ~~Pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~--------g~~~eA~~~~~~ 624 (835)
..+|...|...+.+..+. +..+.|..+|++.. .++|+ ...|+.+..++... +++.+|.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 456667788888875443 23778999999887 67896 56666554443221 234556666555
Q ss_pred C---CCC-CCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 625 M---QIE-PTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 625 m---~~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
. +.. .++.++.++.-.....|+.+.|...++++++++| +..+|++++.+|...|+.++|.+..+....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 223 3556777776666678999999999999999999 578999999999999999999998766554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.11 Score=60.84 Aligned_cols=149 Identities=10% Similarity=0.109 Sum_probs=108.9
Q ss_pred hhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 043955 362 VMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNG 441 (835)
Q Consensus 362 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 441 (835)
...+..+..+|-+.|..+++.++++.+++..+.+..+.|.+...|+.. ++++|..++.+. +..|...+
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 345566666777888888888888888888877888999999999999 999999887554 44588888
Q ss_pred ChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChhhHHHHh
Q 043955 442 LANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRK-GFNLEGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
++.++++++.++... .|+.+.+ -.++...+... |+.--+.++-.|.+-|-+..+++++..+|
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999873 4554433 12233333332 44444556667778888888999999999
Q ss_pred hhCCC---CChhHHHHHHHHHH
Q 043955 521 NCVQT---KDLILWTSMINANG 539 (835)
Q Consensus 521 ~~~~~---~~~~~~~~li~~~~ 539 (835)
..+.+ .|.-...-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 88764 45556666777775
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=51.40 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=71.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 043955 533 SMINANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLL 609 (835)
Q Consensus 533 ~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l 609 (835)
.+..++-..|+.++|+.+|++....|..+.. ..+..+.+++.+.|++++|..+|+.....+.-.+ +......+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556788899999999999999998877663 4677888999999999999999998887653322 222333455678
Q ss_pred hhcCCHHHHHHHHHh
Q 043955 610 GRANHLEEAYQFVRS 624 (835)
Q Consensus 610 ~r~g~~~eA~~~~~~ 624 (835)
...|+.+||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 889999999987654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0011 Score=51.56 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=34.6
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
..|+++.|+..++++++.+|+++..+..|+.+|...|++++|.++.+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777777766533
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.02 Score=51.67 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHH
Q 043955 525 TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHY 602 (835)
Q Consensus 525 ~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y 602 (835)
+.+....-++..-+.+.|+.++|..+|+-... +.|... -|.+|...|...|++++|+..|.... -++| ++..|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~ 106 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHH
Confidence 33444445555556666777777777776665 555543 34555555666677777777666554 4455 35666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 043955 603 ACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
-.+..++...|+.++|.+.|+.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00048 Score=53.61 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=30.9
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVW 634 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~ 634 (835)
..|++++|.++|+.+.. ..| +.+.+..++.+|.+.|++++|.+.++++ ...|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 34566666666665552 244 3555555666666666666666666665 344543333
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.002 Score=50.18 Aligned_cols=64 Identities=25% Similarity=0.275 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC-chhHHHHHHHHHHhcCC
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHS-NKELGEIVAKKLLELDP 662 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~l~p 662 (835)
+..|..++..+.+.|++++|++.+++. .+.|+ +.+|..+..++...| +.+.|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888888888888888776 56674 448888888888888 79999999999999988
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.68 Score=48.25 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=82.5
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 583 (835)
|.-+...|....|.++.....-||..-|-..|.+|+..|++++-.++... .-. .+-|..++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHHHCCCHHHHH
Confidence 44445668888888888888778888888888888888888776654322 122 366777788888888888888
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 043955 584 KFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVH 644 (835)
Q Consensus 584 ~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 644 (835)
.|...+. +.--+++|.+.|.+.+|.+.--+. -|...+..+...|..+
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCCCC
Confidence 8877532 234577788888888887765443 3444555555544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0024 Score=50.41 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+...++.+.|..+++++++++|+++..+..++.+|...|+|++|.+..+..-+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566777888888888888888888888888888888888888888777665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.15 Score=49.70 Aligned_cols=139 Identities=14% Similarity=0.084 Sum_probs=91.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHH----HHHHHHhh
Q 043955 536 NANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYA----CLVDLLGR 611 (835)
Q Consensus 536 ~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~----~lv~~l~r 611 (835)
..|...|++++|++..+... ..+....+. ....+..++|-|.+-++.|. .++- -.+.+ ..|.+..-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq---~ide-d~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAALNV--QILLKMHRFDLAEKELKKMQ---QIDE-DATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---ccch-HHHHHHHHHHHHHHhcc
Confidence 34667788888888877621 222222211 12345567788888888887 3332 22333 34445555
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHH
Q 043955 612 ANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDV 684 (835)
Q Consensus 612 ~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 684 (835)
.+++.+|+=++++| ...|++.+.+-.+.+|-..||.+.|+...+.++..+|++|.....+.-.---.|+-.++
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 66888999999988 36788888888888888889999999999999988888866654444444445655554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.019 Score=58.99 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA-CSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDL 608 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 608 (835)
+|..++....+.+..+.|-.+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++- +.+.+.+.++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 56667777767766777777777776432 1122233333222 33355666688888877766533 45667777888
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCC---HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 609 LGRANHLEEAYQFVRSM--QIEPT---AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m--~~~p~---~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
+.+.|+.+.|..++++. .+.++ ..+|...+.--..+|+++....+.+++.++-|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888887 22222 34899999999999999999999999999988743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.91 Score=46.84 Aligned_cols=234 Identities=18% Similarity=0.195 Sum_probs=148.3
Q ss_pred hCCChHHHHHHHHHHhhcCCcCCh--hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 439 HNGLANEALELFYLMNEANVESDS--ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 439 ~~g~~~~Al~lf~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
-.|++++|.+-|+.|.. .|.. .-+..+.-..-.+|+.+.++++-+..-..-- .-.....++++..+..|+.+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHH
Confidence 35777777777777764 1211 1223333344556777777766655544321 1245567788888888999999
Q ss_pred HHHhhhCC-----CCChh--HHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcccCcHHHHHHH
Q 043955 517 NKVFNCVQ-----TKDLI--LWTSMINANGLH---GRGKVAIDLFYKMEAESFAPDHIT-FLALLYACSHSGLINEGKKF 585 (835)
Q Consensus 517 ~~~f~~~~-----~~~~~--~~~~li~~~~~~---g~~~~Al~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~ 585 (835)
+++.+.-. ++|+. .-..|+.+-++. -+...|...-.+..+ +.||-+- -+.--.++.+.|++.+|-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 98887543 45543 233344333322 245566666555555 7888653 34445678899999999999
Q ss_pred HHHhhhcCCCCCChhHHHHHHHHHhhcCC-----HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 586 LEIMRCDYQLDPWPEHYACLVDLLGRANH-----LEEAYQFVRSMQIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 586 ~~~m~~~~~i~p~~~~y~~lv~~l~r~g~-----~~eA~~~~~~m~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
++.+- ..+|.++.....+ ..|.|+ ++.|..+ + .++|+.. ..-++..+-...|++..|...++.+..
T Consensus 286 lE~aW---K~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L-~--slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 286 LETAW---KAEPHPDIALLYV--RARSGDTALDRLKRAKKL-E--SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHH---hcCCChHHHHHHH--HhcCCCcHHHHHHHHHHH-H--hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99887 4567766554333 345564 2222222 2 4577654 455566777888999999999999999
Q ss_pred cCCCCCCchHHHHHHHHhc-CCchHHHHH
Q 043955 660 LDPGNPGNYVLISNVFAAS-RKWKDVEQV 687 (835)
Q Consensus 660 l~p~~~~~~~~l~~~y~~~-g~~~~a~~~ 687 (835)
.+|. .+.|.+|++|-... |+-+++..+
T Consensus 358 ~~pr-es~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 358 EAPR-ESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred hCch-hhHHHHHHHHHhhccCchHHHHHH
Confidence 9997 46788999987765 765555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.078 Score=54.76 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred hccc-CcHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC---CHHHHHHHHHH-
Q 043955 573 CSHS-GLINEGKKFLEIMRCDYQLDPW----PEHYACLVDLLGRANHLEEAYQFVRSM---QIEP---TAEVWCALLGA- 640 (835)
Q Consensus 573 ~~~~-g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p---~~~~~~~ll~a- 640 (835)
|... |++++|.++|+....-|..... ...+.-+++++.+.|++++|.+++++. ..+. ...+-..++.+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3444 5555555555554433321111 344556677777777777777777765 1111 11121222222
Q ss_pred --HhhcCchhHHHHHHHHHHhcCCCCCCc--hHHHHHHHH
Q 043955 641 --CRVHSNKELGEIVAKKLLELDPGNPGN--YVLISNVFA 676 (835)
Q Consensus 641 --~~~~~~~~~a~~~~~~~~~l~p~~~~~--~~~l~~~y~ 676 (835)
+...||...|...+++..+.+|.-..+ +.++.++..
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 234477778888888888787754333 455554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.13 Score=53.11 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=72.3
Q ss_pred HHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHhcc
Q 043955 503 LVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLH-GRGKVAIDLFYKMEAE----SFAPDH--ITFLALLYACSH 575 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~----g~~Pd~--~t~~~ll~a~~~ 575 (835)
.++.|.+.|++..|-+++. .+...|... |++++|++.|++..+. | .|.. ..+..+...+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 3455666666666555443 344556566 6777777777665542 2 1111 234455556667
Q ss_pred cCcHHHHHHHHHHhhhcCCC----CCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----C--HHHHHHHHHHHhh
Q 043955 576 SGLINEGKKFLEIMRCDYQL----DPWP-EHYACLVDLLGRANHLEEAYQFVRSM-QIEP----T--AEVWCALLGACRV 643 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i----~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p----~--~~~~~~ll~a~~~ 643 (835)
.|++++|.++|+......-- .++. .+|-..+-++...|++-.|.+.+++. ...| + ......|+.+|..
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 77777777777766543211 1122 23334444555567777777777664 2222 1 2245566666654
Q ss_pred c--CchhHHHHHHHHHHhcCC
Q 043955 644 H--SNKELGEIVAKKLLELDP 662 (835)
Q Consensus 644 ~--~~~~~a~~~~~~~~~l~p 662 (835)
. ..++.+..-++++-+|||
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---H
T ss_pred CCHHHHHHHHHHHcccCccHH
Confidence 3 223444444444444444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.016 Score=62.01 Aligned_cols=117 Identities=7% Similarity=0.078 Sum_probs=80.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhcCCCCC-----eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 043955 92 TDFIVNSLVAMYAKCYDFRKARQLFDRMGEKED-----VVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAA 166 (835)
Q Consensus 92 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-----~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 166 (835)
+......+++......+++.+..++-+....|+ ..|..++|+.|...|..++++.+++.=...|+-||.+||+.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 344445555555555666667777666533222 234568888888888888888888888888888888888888
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 043955 167 LQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARC 208 (835)
Q Consensus 167 l~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 208 (835)
|+.+.+.|++..|.++...|+..+...+..++..-+..+.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888887777776655555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0045 Score=50.46 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=53.3
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESF-APDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA 618 (835)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5788888888888887422 12344555577788888888888888876 2 33342 33333457788888888888
Q ss_pred HHHHHh
Q 043955 619 YQFVRS 624 (835)
Q Consensus 619 ~~~~~~ 624 (835)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.017 Score=61.82 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=101.2
Q ss_pred CCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCCcchHHHHHHHHHhcCChHHHHHHHhhc---CCCCCee
Q 043955 52 LGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCG--YDSTDFIVNSLVAMYAKCYDFRKARQLFDRM---GEKEDVV 126 (835)
Q Consensus 52 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~ 126 (835)
.+.+.+......++..+....+++.+..+.-...... ...-..+..++|..|.+.|..+.+..+++.= +.-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3556677788899999998888888888877776552 2223445679999999999999999999863 5559999
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcC
Q 043955 127 LWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDS 173 (835)
Q Consensus 127 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 173 (835)
++|.|+..+.+.|++..|.++...|...+...+..|+.-.+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999888888889988888877654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.034 Score=52.68 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=69.0
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+.+ | . -...+.+-|++++++|.
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------F----~--hyp~Qq~c~i~lL~qME 130 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------F----M--HYPRQQECAIDLLEQME 130 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-------h----c--cCcHHHHHHHHHHHHHH
Confidence 3444444556677778888888888888887765 4332 11222211 1 0 12235677999999999
Q ss_pred HCCCCCCHHHHHHHHHHhcccCcH-HHHHHHHHHhhhcCCCCCC
Q 043955 556 AESFAPDHITFLALLYACSHSGLI-NEGKKFLEIMRCDYQLDPW 598 (835)
Q Consensus 556 ~~g~~Pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~i~p~ 598 (835)
..|+.||..|+..|+..+.+.+.. ...+++.--|.+-.+++|-
T Consensus 131 ~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~ 174 (228)
T PF06239_consen 131 NNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPW 174 (228)
T ss_pred HcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999998777653 3334444444443355553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.03 Score=57.58 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK------DLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
.|..|++...+. +..+...+...++++.+.|+.+.|+.+|++.... -...|...+.--.++|+.+.+.++.++
T Consensus 54 ~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 54 RARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444433 4456677888889999999999999999987642 235899999999999999999999999
Q ss_pred HHHCCCCCCHHHH
Q 043955 554 MEAESFAPDHITF 566 (835)
Q Consensus 554 m~~~g~~Pd~~t~ 566 (835)
+.+ .-|+..++
T Consensus 133 ~~~--~~~~~~~~ 143 (280)
T PF05843_consen 133 AEE--LFPEDNSL 143 (280)
T ss_dssp HHH--HTTTS-HH
T ss_pred HHH--HhhhhhHH
Confidence 988 45554333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0027 Score=44.18 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
.+|..|..++...|+.+.|+.+++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888899999999999999999999999999988887764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.018 Score=48.13 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCCccHHHHHHHHhccC--------CchHHHHHHHHHHHhCCCCCcchHH
Q 043955 27 NAMLGAYVSNGEPLRVLETYSRMRVLGI-SVDAFTFPCVIKACAMLK--------DLDCGAKIHGLVLKCGYDSTDFIVN 97 (835)
Q Consensus 27 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~~ 97 (835)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4466667778999999999999999999 899999999999887654 2335677888999999999999999
Q ss_pred HHHHHHHh
Q 043955 98 SLVAMYAK 105 (835)
Q Consensus 98 ~Li~~y~~ 105 (835)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887665
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0066 Score=47.88 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=51.3
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 607 DLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
.+|.+.+++++|.+.++.+ .+.|+ +..|..+...+...|+.+.|...++++++..|+++....+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5677888999999998888 56664 4477777778888899999999999999999987655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.028 Score=48.89 Aligned_cols=84 Identities=15% Similarity=0.054 Sum_probs=57.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCC-C-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC---CCCchHHHHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM---QIEP-T-AEVWCALLGACRVHSNKELGEIVAKKLLELDPG---NPGNYVLISNVFA 676 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m---~~~p-~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~ 676 (835)
+..++-..|+.++|+.++++. ...+ + ...+-.|.++++..|+.+.|..++++.++-.|+ +....+.++-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555667777777777665 2111 1 224556667788888888888888888877777 6666777788888
Q ss_pred hcCCchHHHHHH
Q 043955 677 ASRKWKDVEQVR 688 (835)
Q Consensus 677 ~~g~~~~a~~~~ 688 (835)
..|++++|.++.
T Consensus 87 ~~gr~~eAl~~~ 98 (120)
T PF12688_consen 87 NLGRPKEALEWL 98 (120)
T ss_pred HCCCHHHHHHHH
Confidence 888888887664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.29 Score=51.48 Aligned_cols=158 Identities=17% Similarity=0.098 Sum_probs=96.9
Q ss_pred HHHHHhcCChhhHHHHhhhCCCC---Ch----hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043955 504 VDMYARCGALDIANKVFNCVQTK---DL----ILWTSMINANGL---HGRGKVAIDLFYKMEAESFAPDHITFLALLYAC 573 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~ 573 (835)
+-.|-...+++.-.++++.+... ++ ..--...-++-+ .|+.++|++++..+....-.++.-||..+...+
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 33466677777777777766643 11 112233444555 688888888888866665666666665554432
Q ss_pred ---------cccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHH----HHHHH---Hh-----CCCCC--C
Q 043955 574 ---------SHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEE----AYQFV---RS-----MQIEP--T 630 (835)
Q Consensus 574 ---------~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~e----A~~~~---~~-----m~~~p--~ 630 (835)
......++|...|.. .|.++|+..+--.++-++..+|.-.+ ..++. .. -..++ |
T Consensus 228 KD~~~~s~~~d~~~ldkAi~~Y~k---gFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 228 KDLFLESNFTDRESLDKAIEWYRK---GFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHcCccchHHHHHHHHHHHH---HHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 122346777777763 45677765443344455555554222 22222 11 12233 4
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
-....+++.++...||.+.|..++++++.+.|..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 4456789999999999999999999999998764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.35 Score=52.72 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=60.7
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINE 581 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 581 (835)
+-..|+...|+.+.|..+ .+.+|-.+-++++-+++-. .+..+...+-.-+-+...+.-
T Consensus 708 aAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccch
Confidence 344566667777776654 3445555555555555432 223333333333445555666
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH
Q 043955 582 GKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQ-IEPTAE 632 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~ 632 (835)
|-++|.+|-. ...+|++....|+++||..+-++.| +.||..
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 7778877642 2467888888999999999888885 566654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.26 Score=53.71 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhc
Q 043955 141 CLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQ 220 (835)
Q Consensus 141 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 220 (835)
+-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|. +.|.+ |.-+.+|.....++.|.++...
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 33455567788888888886543 334677788888877764 45554 5667777777777777777654
Q ss_pred C
Q 043955 221 L 221 (835)
Q Consensus 221 ~ 221 (835)
-
T Consensus 684 g 684 (1081)
T KOG1538|consen 684 G 684 (1081)
T ss_pred C
Confidence 3
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.043 Score=52.05 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=77.1
Q ss_pred HHHhhhC--CCCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-------------
Q 043955 517 NKVFNCV--QTKDLILWTSMINANGLH-----GRGKVAIDLFYKMEAESFAPDHITFLALLYACSHS------------- 576 (835)
Q Consensus 517 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~------------- 576 (835)
...|+.. ..+|..++..+|..|.++ |+.+=....++.|.+-|+.-|-.+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556655 467778888888887754 66676777788899999999999999998866542
Q ss_pred ---CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCH
Q 043955 577 ---GLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHL 615 (835)
Q Consensus 577 ---g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~ 615 (835)
.+.+-|+++++.|. .+|+-||.+++..+++++|+.+..
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 23467899999997 569999999999999999988763
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.09 Score=55.98 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=108.0
Q ss_pred hHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcc----------cCcHHHHHHHHHHhh
Q 043955 529 ILW--TSMINANGLHG-----RGKVAIDLFYKMEA-ESFAPDHITFLALLYACSH----------SGLINEGKKFLEIMR 590 (835)
Q Consensus 529 ~~~--~~li~~~~~~g-----~~~~Al~l~~~m~~-~g~~Pd~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~ 590 (835)
..| ..++.|....- ..+.|+.+|.+... +.+.|+...-.+.+.-|.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 55555554421 35678999999982 2378886543333333321 223455666665555
Q ss_pred hcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 591 CDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 591 ~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.+.| |+.....++-+++-.|+++.|...+++. .+.||.. +|......+.-.|+.+.|.+..+++++++|...++
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 7778 6778888888888888899999999998 6778654 77777777778899999999999999999987766
Q ss_pred hHHHHHH--HHhcCCchHHHHHH
Q 043955 668 YVLISNV--FAASRKWKDVEQVR 688 (835)
Q Consensus 668 ~~~l~~~--y~~~g~~~~a~~~~ 688 (835)
-++--++ |.. ...++|.++.
T Consensus 409 ~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcC-CchhhhHHHH
Confidence 6554444 544 4466666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.1 Score=52.72 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=49.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANH 614 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 614 (835)
...|++++|+..|+.++. ..|+. ..+..+..++...|++++|...|+.+.+.|.-.|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~---------------- 215 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK---------------- 215 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc----------------
Confidence 344666666666666665 33443 23334444555555555555555555544333221
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 615 LEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 615 ~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
.+..|-.+...+...|+.+.|...++++++..|+..
T Consensus 216 ---------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 216 ---------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ---------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 112333334445566777777777777777777643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.25 Score=47.94 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=91.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHh-----CCCCchhHHHHHHH
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRK-----GFNLEGSVASSLVD 505 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~~~~li~ 505 (835)
+.++..+.-.|.+.-.+.++.+..+...+-++.-...+.+.-.+.|+.+.++..++.+.+. +......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3455555556677777777777777554455555666666667778888887777776664 23333334444444
Q ss_pred HHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043955 506 MYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLAL 569 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~l 569 (835)
.|.-..+..+|.+.|+++.. .|++.-|.-.-...-.|+..+|++..+.|.+ ..|...+-.++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 56666788888888887764 4667777766666778899999999999988 56665544433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.056 Score=45.32 Aligned_cols=79 Identities=9% Similarity=0.056 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHhhcCC--------ChhHHHHHHHHHHHhCCCCchhHHH
Q 043955 129 NSIISAYSASGQCLEALGLFREMQRVGL-VTNAYTFVAALQACEDSS--------FETLGMEIHAATVKSGQNLQVYVAN 199 (835)
Q Consensus 129 n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~l~~~~~~~g~~~~~~~~~ 199 (835)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.+|++.++.. .+-....+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667889999999999999998 899999999998866543 2334556777788888888888888
Q ss_pred HHHHHHHh
Q 043955 200 ALIAMYAR 207 (835)
Q Consensus 200 ~li~~y~~ 207 (835)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.84 Score=47.52 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=66.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhh
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDH-----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGR 611 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r 611 (835)
..+.|++..|.+.|.+.+. +.|+. ..|.....+..+.|+.++|+.-.+... .|+|. +..|---..++.-
T Consensus 259 ~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred HhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3445555555555555544 33332 223333334445555555555444333 34443 2333333333333
Q ss_pred cCCHHHHHHHHHhC-CCCCC------------------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC-CCCc----
Q 043955 612 ANHLEEAYQFVRSM-QIEPT------------------AEVWCALLGACRVHSNKELGEIVAKKLLELDPG-NPGN---- 667 (835)
Q Consensus 612 ~g~~~eA~~~~~~m-~~~p~------------------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~-~~~~---- 667 (835)
.++|++|.+-+++. ..+.+ ..-|-..|+.-+...+.+......+.++...|+ +++.
T Consensus 334 le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~ea 413 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEA 413 (486)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHH
Confidence 44555555444443 11111 112445555556666666666666667777776 3333
Q ss_pred ---hHHHHHHHHhcCCchHHH
Q 043955 668 ---YVLISNVFAASRKWKDVE 685 (835)
Q Consensus 668 ---~~~l~~~y~~~g~~~~a~ 685 (835)
..-.++.|...++..+..
T Consensus 414 E~kFkevgeAy~il~d~~kr~ 434 (486)
T KOG0550|consen 414 EAKFKEVGEAYTILSDPMKRV 434 (486)
T ss_pred HHHHHHHHHHHHHhcCHHHHh
Confidence 233444555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.019 Score=60.88 Aligned_cols=61 Identities=16% Similarity=-0.013 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc---hHHHHHHHHhcCCchHHHHHHHHH
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN---YVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
+..|..|..++...|+++.|...++++++++|+++.+ |..++.+|+..|+.++|....+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3355566556666666666666666666666655533 556666666666666665554433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.074 Score=53.75 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC---CchHHH
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP---GNYVLI 671 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l 671 (835)
..|..-++++.+.|++++|...++.. ...|+ +.++-.|..++...|+.+.|...++++++..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777666655 22232 23455577778889999999999999999988754 456677
Q ss_pred HHHHHhcCCchHHHHHHHHHHc
Q 043955 672 SNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 672 ~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.+|...|++++|.++.+...+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999876654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.8 Score=42.42 Aligned_cols=192 Identities=20% Similarity=0.128 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQ-----TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY 571 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~ 571 (835)
..........+...+.+..+...+.... ......+..+...+...+...++++.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 4455666667777777777777776543 234456666677777777788888888887764333312 1222222
Q ss_pred -HhcccCcHHHHHHHHHHhhhcCCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHhh
Q 043955 572 -ACSHSGLINEGKKFLEIMRCDYQLDP----WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT--AEVWCALLGACRV 643 (835)
Q Consensus 572 -a~~~~g~~~~a~~~~~~m~~~~~i~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~a~~~ 643 (835)
++...|..+++...|..... ..| ....+......+...|+.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888887642 333 2344444445566778888888887776 44444 4567777777777
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.++.+.+......+++..|.....+..++.++...|.++++........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888888766667777777777777788776655444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=3.9 Score=45.53 Aligned_cols=282 Identities=14% Similarity=0.127 Sum_probs=131.3
Q ss_pred hhhhhccCChhHHHHHHHhcCCC-----CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccC
Q 043955 303 MDMYAKCCCVNYMGRVFYQMTAQ-----DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKC 377 (835)
Q Consensus 303 i~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 377 (835)
|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-... ...+.++.+...
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 45555556655555555443221 1235666666666666666666665442210 011112222222
Q ss_pred chHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcC
Q 043955 378 MSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEAN 457 (835)
Q Consensus 378 ~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g 457 (835)
++. ++.+.+.-+++....-.+.+|+.+.|.-++|.+.|-+-..|- +-+..|...+++.+|.++-++.+-
T Consensus 838 f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l-- 906 (1189)
T KOG2041|consen 838 FGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL-- 906 (1189)
T ss_pred hhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc--
Confidence 211 111222233444567777777777777777777766554442 234566666777777777665542
Q ss_pred CcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChh---HHHHH
Q 043955 458 VESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLI---LWTSM 534 (835)
Q Consensus 458 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~l 534 (835)
|...|+ +.- .+-++++ +.. .---|.++-|.|+.-+|.++..+|.++... .+--+
T Consensus 907 --~qv~tl---iak--------~aaqll~---~~~-------~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~ 963 (1189)
T KOG2041|consen 907 --PQVQTL---IAK--------QAAQLLA---DAN-------HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRL 963 (1189)
T ss_pred --hhHHHH---HHH--------HHHHHHh---hcc-------hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHH
Confidence 222222 111 1111111 100 112367788888887777777776542111 01100
Q ss_pred ----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 043955 535 ----INANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLG 610 (835)
Q Consensus 535 ----i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 610 (835)
+-+-.-..+..++++-.++....|...|... +...|...++-++.+..-+ | ....|+-.|..--.
T Consensus 964 KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql 1032 (1189)
T KOG2041|consen 964 KKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQRQL 1032 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHH
Confidence 0011111223344444444444443333321 1233334444444332210 1 12344444555556
Q ss_pred hcCCHHHHHHHHHhC----CCCCCHHHHHHHH
Q 043955 611 RANHLEEAYQFVRSM----QIEPTAEVWCALL 638 (835)
Q Consensus 611 r~g~~~eA~~~~~~m----~~~p~~~~~~~ll 638 (835)
+.|+++.|++---.. .+-|-..+|.-|.
T Consensus 1033 ~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1033 FEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 788998888653333 3445455665443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.63 Score=46.62 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=43.2
Q ss_pred HhhcCchhHHHHHHHHHHhcCCCCC---CchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 641 CRVHSNKELGEIVAKKLLELDPGNP---GNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 641 ~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.+.|+..-|..-++.+++--|+.+ .+...|.+.|...|.-++|..+++.+..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 5566788888888999999888754 4567889999999999999998876653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.077 Score=46.67 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhh--------------hcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 043955 562 DHITFLALLYACSHSGLINEGKKFLEIMR--------------CDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-- 625 (835)
Q Consensus 562 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-- 625 (835)
|+.++..++.|+++.|.++....+.++.- ....+.|+.....+++..|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455566666666666666555554321 22345577888889999999999999999887765
Q ss_pred --CCCCCHHHHHHHHHHHhhcCc
Q 043955 626 --QIEPTAEVWCALLGACRVHSN 646 (835)
Q Consensus 626 --~~~p~~~~~~~ll~a~~~~~~ 646 (835)
|++-+..+|..|+.=|...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 666667889999866555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=4.7 Score=45.50 Aligned_cols=326 Identities=13% Similarity=0.012 Sum_probs=162.0
Q ss_pred HHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccC---ChhHHHHHHHhcCC--CCcccHHHHHHHHHhc
Q 043955 266 NAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCC---CVNYMGRVFYQMTA--QDFISWTTIIAGYAQN 340 (835)
Q Consensus 266 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~ 340 (835)
.++.-....+.+..|.|+-..+-..-... ..++.....-+.+.. +-+-+..+=+++.. .+-++|..+.+--.+.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 34445555566666666655443211111 445555555555542 23334444455555 5678888888888889
Q ss_pred CChHHHHHHHHHHHHcCCC----CChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHH
Q 043955 341 NCHLKALELFRTVQLEGLD----ADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSR 416 (835)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 416 (835)
|+.+-|..+++.=...+-. .+..-+...|.-+...|+.+...++.-++.+.-... +......+...|.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s--------~l~~~l~~~p~a~ 592 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS--------SLFMTLRNQPLAL 592 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--------HHHHHHHhchhhh
Confidence 9999888887643222110 111223344444555566555555444433321100 0000011122222
Q ss_pred HHHHhcCC-CCchhHHHHHHHHHhCCChHHHHHHH--HHHh----hcCCcCChhhhHhHHHHhhcccchhhHHHHHHH-H
Q 043955 417 NVFESIES-KDVVSWTSMISSYVHNGLANEALELF--YLMN----EANVESDSITLVSALSAASSLSILKKGKELNGF-I 488 (835)
Q Consensus 417 ~~f~~~~~-~~~~~~~~li~~~~~~g~~~~Al~lf--~~m~----~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~-~ 488 (835)
.++.+.-. .|.. .+-+-|-+..+.. ++.-| +... ..|..|+ ....-.+|++......+.+..+. +
T Consensus 593 ~lY~~~~r~~~~~---~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRA---TLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchh---hhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 22222111 1110 0111122222222 22111 1100 1122233 23334445444332222111111 1
Q ss_pred ----------HHhCC-CCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 489 ----------IRKGF-NLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 489 ----------~~~g~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
.+.|. -.|..+.-. +.-+..-|....|.++-.+..-||-..|---+.+++..+++++-+++-+.+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dT-v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDT-VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHH-HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 11222 223333322 33344668888888888888878888887788888888888876666555431
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 558 SFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 558 g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
.+-|.-...+|...|+.+||.+|+.... | +.-.+++|.+.|.+.||.++--+
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHHHH
Confidence 3445566778888888888888876443 1 11467888888888888776443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.056 Score=46.27 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=61.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC----CchHHHHHHHHhcCC
Q 043955 607 DLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP----GNYVLISNVFAASRK 680 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 680 (835)
-+++.+|++++|++.|.+. .+-| .+.+||.-..++|.+|+.+.|..-.++++++.-+.. .+|+.-+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566677777777777665 3343 556777777788888888888888888877754332 247777778888888
Q ss_pred chHHHHHHHHHHcCC
Q 043955 681 WKDVEQVRMRMRGSG 695 (835)
Q Consensus 681 ~~~a~~~~~~m~~~~ 695 (835)
-++|+.-.+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 887777666555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.54 Score=43.28 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----C--CCCCH
Q 043955 559 FAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----Q--IEPTA 631 (835)
Q Consensus 559 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~--~~p~~ 631 (835)
..|....-..|..+....|+..||...|++... |+-. +....-.+..+...-|+..+|...+++. | -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 455555555666677777777777777765432 4333 4555555566666667777777776665 1 12443
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
. -.+...+...|..+.|+.+++.++.-.|. +..-...+.+++++|+.+++..-..
T Consensus 163 ~--Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 163 H--LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred h--HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 2 23445677788888888888888888875 4555667788888998888765433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=3.2 Score=46.18 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=20.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcC
Q 043955 90 DSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120 (835)
Q Consensus 90 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 120 (835)
.|.+..|..|.....+.-.++.|...|-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4666777777666666666677777766553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=3.3 Score=42.96 Aligned_cols=215 Identities=16% Similarity=0.111 Sum_probs=128.7
Q ss_pred HhcCChhhHHHHHHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhc-CCcCChhh--hHhHHHHhhc---ccc
Q 043955 407 GKCGNIDYSRNVFESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEA-NVESDSIT--LVSALSAASS---LSI 477 (835)
Q Consensus 407 ~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~-g~~p~~~t--~~~ll~a~~~---~~~ 477 (835)
.+.|..+.|+..-+..-.. =.-.|.+.+...++.|+++.|+++.+.-+.. -+.+|..- -..+|.+-+. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3456666666555544332 2235667777778888888888887776552 23444322 2233333221 123
Q ss_pred hhhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChhhHHHHhhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVA-SSLVDMYARCGALDIANKVFNCVQT--KDLILWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
...++..-.+..| +.||..-. -.-...|.+.|++.++-.+++.+-+ |.+..|. .|....-++.++.-+++.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHH
Confidence 3444444433333 33432211 1224567788999999988888764 4444443 233333334444444444
Q ss_pred HH-CCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC---CCC
Q 043955 555 EA-ESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA-NHLEEAYQFVRSM---QIE 628 (835)
Q Consensus 555 ~~-~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m---~~~ 628 (835)
.. ..++||. .....+..+-...|.+..|+.--+... ...|....|..|.|+-.-. |+-.++...+-+. |-+
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 32 2378876 466677778888899888887666554 6789999999999987654 9999999888776 555
Q ss_pred CC
Q 043955 629 PT 630 (835)
Q Consensus 629 p~ 630 (835)
|+
T Consensus 396 Pa 397 (531)
T COG3898 396 PA 397 (531)
T ss_pred Cc
Confidence 53
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.13 Score=47.15 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=70.5
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP--WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a 650 (835)
....|..+.+...+..+..-|.-.+ +... ...+....+.++++- ..++..++..+...|+.+.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456677777777776665553222 1111 223333333343331 12456677778899999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 651 EIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
...+++++.++|-+...|..|..+|...|+..+|.++...++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.13 Score=53.43 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEE
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIH 712 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~ 712 (835)
++..|...+.+.++...|.....++++++|+|.-+...-+.+|+..|.+++|....+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------- 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------- 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-------------------
Confidence 4556666677889999999999999999999999999999999999999999999887775
Q ss_pred EEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 713 SFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 713 ~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
..|..+.|...|..|..++
T Consensus 320 -------~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 320 -------LEPSNKAARAELIKLKQKI 338 (397)
T ss_pred -------hCCCcHHHHHHHHHHHHHH
Confidence 3467788999999888887
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.17 Score=54.05 Aligned_cols=112 Identities=9% Similarity=0.092 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc
Q 043955 579 INEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGR---------ANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN 646 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r---------~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~ 646 (835)
.+.|..+|......-.++|+ ...|.++...+.. .....+|.++.++. .+.| |+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 56788889888766688886 6777766654321 23455677777766 5666 66666666666677788
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
.+.|...++++++++|+.+..|...+.+..-+|+.++|.+..+.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.35 E-value=6.4 Score=44.47 Aligned_cols=335 Identities=12% Similarity=0.015 Sum_probs=176.2
Q ss_pred HCCCCCChhhHHHH-----HHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC---hhHHHHHHhcCCC-
Q 043955 153 RVGLVTNAYTFVAA-----LQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGK---MTEAAGVLYQLEN- 223 (835)
Q Consensus 153 ~~g~~p~~~t~~~l-----l~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~- 223 (835)
.-|+..+..-|..+ ++-+...+.+..|.++-..+-..-... ..++.....-+.+..+ .+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 44666665555443 444555566666666655543222222 4566666666666532 3334444444444
Q ss_pred -CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccc
Q 043955 224 -KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAG----QKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQI 298 (835)
Q Consensus 224 -~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 298 (835)
...++|..+.+---+.|+++-|..+++.=...+ +-.+-.-+...+.-+...|+.+...++.-++...-...+
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~--- 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSS--- 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---
Confidence 466788888887888888888888775422221 111223455666677777777777776666554311100
Q ss_pred cchhhhhhhccCChhHHHHHHHhcCC-CCcccHHHHHHHHHhcCChHHHHHHHHHH------HHcCCCCChhHHHHHHHH
Q 043955 299 GNTLMDMYAKCCCVNYMGRVFYQMTA-QDFISWTTIIAGYAQNNCHLKALELFRTV------QLEGLDADVMIIGSVLMA 371 (835)
Q Consensus 299 ~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g~~p~~~t~~~ll~a 371 (835)
+. ....+...|..++.+... .|-. .+- .+-+.++-.+++.-|..= ...|..|+. ...-.+
T Consensus 581 l~------~~l~~~p~a~~lY~~~~r~~~~~---~l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 581 LF------MTLRNQPLALSLYRQFMRHQDRA---TLY-DFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred HH------HHHHhchhhhHHHHHHHHhhchh---hhh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 00 001112223333322211 1110 011 111222222222222110 011223332 233334
Q ss_pred hccccCchHHHHHH---HHHHH--------hCCC-chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHh
Q 043955 372 CSGLKCMSQTKEIH---GYIIR--------KGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVH 439 (835)
Q Consensus 372 ~~~~~~~~~~~~i~---~~~~~--------~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 439 (835)
|++......+.+.. ..+++ .|.. .....+-.+.-+..-|+...|.++=.+..-||-..|---+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 44443322111111 11111 1111 112333444455677888899998888888888888888888999
Q ss_pred CCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHH
Q 043955 440 NGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKV 519 (835)
Q Consensus 440 ~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 519 (835)
.+++++-.++-+.+. .+.-|.-++.+|.+.++.++|+.+...+... .-.+.+|.++|++.+|.++
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 888887776655443 2567777888899888888888776544211 1577888888888887765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.16 Score=54.12 Aligned_cols=63 Identities=11% Similarity=-0.065 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI----TFLALLYACSHSGLINEGKKFLEIMRC 591 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (835)
+...|+.+..+|.+.|++++|+..|++.++ +.||.. +|..+..++.+.|+.++|...++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556777777777777777777777777776 566643 477777777777777777777776554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.17 Score=50.67 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh---cccCcHHHHHHHHHHhhhcCCCCC-ChhH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYAC---SHSGLINEGKKFLEIMRCDYQLDP-WPEH 601 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~i~p-~~~~ 601 (835)
|...|-.|...|...|++..|+.-|.+..+ +.||. ..+..+..++ +......+|..+|+.+. ..+| ++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCccHHH
Confidence 677888888888888888888888888777 44444 2333333333 22233556777777666 5566 4666
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALL 638 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll 638 (835)
..-+.-.+...|++.+|...++.| ..-|....|..++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 666666666777777777777666 3334334455554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.4 Score=43.05 Aligned_cols=182 Identities=13% Similarity=-0.008 Sum_probs=116.1
Q ss_pred HHHHHHHHH-hCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--CCh--------hHHHHHHHHHHhcCChHHHHHH
Q 043955 482 KELNGFIIR-KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--KDL--------ILWTSMINANGLHGRGKVAIDL 550 (835)
Q Consensus 482 ~~i~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~Al~l 550 (835)
+.+|..+.+ .|.+ +++|+..|.-..-+++-...|+.-.. ..+ ..-+.|+..+.-+|.+.-.+.+
T Consensus 125 R~lhAe~~~~lgnp-----qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 125 RILHAELQQYLGNP-----QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence 456666554 2332 56677766665555555555554332 122 3346677777778888889999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcC----CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043955 551 FYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDY----QLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQ 626 (835)
Q Consensus 551 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 626 (835)
+++.++..-+-+.+....+.+.-.+.|+++.|..+|+...+.- +++-..-..-.+..++.-+.++-+|..++.+.+
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 9999985444455666777777889999999999999766442 333333333445556666778888888887774
Q ss_pred C-CCCHHHHHHHHHHHh-hcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 627 I-EPTAEVWCALLGACR-VHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 627 ~-~p~~~~~~~ll~a~~-~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
. +|...++..-=..|. -.|+...|.+..+.+.+..|...-.-
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 3 343233322222233 34788888888888888888755444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=3.4 Score=40.37 Aligned_cols=162 Identities=22% Similarity=0.134 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-ChhHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQT--K-DLILWTSMIN-ANGLHGRGKVAIDLFYKMEAESFAP----DHITFLA 568 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~-~~~~~g~~~~Al~l~~~m~~~g~~P----d~~t~~~ 568 (835)
...+..+...+...+....+.+.+..... + +...+..... .+...|+.++|...|++... ..| ....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 172 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence 34445555666666777777777776654 2 2233333444 68889999999999999865 444 2233444
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVH 644 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~ 644 (835)
....+...+..+++...+..... ..|. ...+..+...+...|.+++|...+... ...|+ ...+..+...+...
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 44446778899999999988773 3343 677888888999999999999998887 44555 45666666666666
Q ss_pred CchhHHHHHHHHHHhcCCC
Q 043955 645 SNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~ 663 (835)
++.+.+....++.++..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7799999999999999997
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.034 Score=44.48 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM-----QIE---PT-AEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m-----~~~---p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
.|..+..+|.+.|++++|++.+++. ... |+ +.++..+...+...|+.+.|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444455555555544444433 011 11 22344444555555555555555555544
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.84 E-value=9.6 Score=43.73 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=16.0
Q ss_pred HHHhCCChhHHHHHHhcCCCC
Q 043955 204 MYARCGKMTEAAGVLYQLENK 224 (835)
Q Consensus 204 ~y~~~g~~~~A~~~f~~~~~~ 224 (835)
.+-..|++++|.+.+..+|-+
T Consensus 499 lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 499 LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHhcCHHHHHHHHhcCCHH
Confidence 344568899999999988854
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=5.2 Score=40.10 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=19.9
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
.+.|.+..|..-|+.+.++|.-.| ..+....|++.|...|..++|.+
T Consensus 186 ~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 186 TKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 334444444444444444443333 23344444444444444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.15 Score=55.66 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=86.4
Q ss_pred HhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHH
Q 043955 539 GLHGRGKVAIDLFY-KMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 539 ~~~g~~~~Al~l~~-~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~e 617 (835)
...|+.++++++.. .-.-..++ ..-...++.-+...|..+.|+++-..-.. -.++....|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 35677777666654 11111122 22245566667788888888887543222 2577788999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 618 AYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 618 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
|.+..++. ++...|..|......+||++.|+.+++++ ..+..|+-+|...|+-+.-.++-+....+|
T Consensus 337 A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988765 37789999999999999999999999865 347789999999999887777766666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.47 E-value=8 Score=41.15 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=56.4
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 618 AYQFVRSMQIEP----TAEVWCALLGA--CRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 618 A~~~~~~m~~~p----~~~~~~~ll~a--~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
-+.++++.++.| +..+-|.|..| ...||+...+..-..-+.+..| .+.+|.+++-......+++||-....
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345666665555 23356667666 5688999999999999999999 88999999999999999999988875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.32 E-value=2 Score=50.91 Aligned_cols=157 Identities=22% Similarity=0.200 Sum_probs=97.2
Q ss_pred CChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHH
Q 043955 410 GNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFII 489 (835)
Q Consensus 410 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 489 (835)
+++++|..-+.++. ...|.-.+.--.++|.+.+|+.+ .+|+..++.-+..+++.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHH------------HH
Confidence 34555555544443 22334444444556666666665 367777776666666531 22
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 043955 490 RKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT--FL 567 (835)
Q Consensus 490 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t--~~ 567 (835)
+.+ .++--.-||.+||++++|.+. |-..|++++|+.+-.+|.. .-|.+. -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 211 122334579999999999875 4567899999999888742 223322 24
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.|.+-|..+|..-||-++...-. -+| .--+.+|+++-.+++|.......
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~----sd~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYL----SDP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHh----cCH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 56667778888777777765433 223 34577888888999998877655
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.15 E-value=9.3 Score=40.68 Aligned_cols=112 Identities=7% Similarity=0.040 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHH--HhCCChhHHHHHHHHHHHC--CCCC------------C
Q 043955 96 VNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAY--SASGQCLEALGLFREMQRV--GLVT------------N 159 (835)
Q Consensus 96 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p------------~ 159 (835)
.+.++++|.- .+++............-....|-.+..+. -+.+.+.+|++.+...... +-.| |
T Consensus 49 ~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 49 GGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred hhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 4556666654 23444333333331111133454444443 3567777777777666543 2221 2
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhC
Q 043955 160 AYTFVAALQACEDSSFETLGMEIHAATVKSG----QNLQVYVANALIAMYARC 208 (835)
Q Consensus 160 ~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g----~~~~~~~~~~li~~y~~~ 208 (835)
-+-=......+...|.+.+|+.++..++..= ..-+...|+.++-++++.
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 2222334455667778888877777766543 335677777777776653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.43 Score=42.01 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHS 576 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 576 (835)
..++.+++-++++.|+++....+.+..=.-|+ .+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 34556666677777777666666654322111 11111111 112234679999999999999999
Q ss_pred CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 043955 577 GLINEGKKFLEIMRCDYQLDPWPEHYACLVDL 608 (835)
Q Consensus 577 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 608 (835)
|++..|.++.+...+.|+|+-....|..|..-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999977788888777653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.11 Score=33.34 Aligned_cols=33 Identities=39% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.+|..+...+...|+.+.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.09 Score=33.92 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.+|..+..++...|+.+.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.4 Score=39.85 Aligned_cols=125 Identities=13% Similarity=0.198 Sum_probs=71.2
Q ss_pred HhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChH
Q 043955 466 VSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGK 545 (835)
Q Consensus 466 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 545 (835)
..++..+...+.......+++.+++.+ ..++.+.|.|+.+|++.. ..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--------------------------------~~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--------------------------------PQ 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--------------------------------HH
Confidence 344555555555555555555555554 244555555555555432 22
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHh
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA-NHLEEAYQFVRS 624 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~ 624 (835)
+.++.++. .++......++..|...+.++++..++..+.. |...++++... ++.+.|.+++.+
T Consensus 58 ~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 58 KEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 33333331 23344455577778888888888887765531 22344444444 788888888876
Q ss_pred CCCCCCHHHHHHHHHHHh
Q 043955 625 MQIEPTAEVWCALLGACR 642 (835)
Q Consensus 625 m~~~p~~~~~~~ll~a~~ 642 (835)
- .++..|..++..|.
T Consensus 122 ~---~~~~lw~~~~~~~l 136 (140)
T smart00299 122 Q---NNPELWAEVLKALL 136 (140)
T ss_pred C---CCHHHHHHHHHHHH
Confidence 2 35667887777664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.94 E-value=3.4 Score=40.21 Aligned_cols=140 Identities=16% Similarity=0.060 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh-hHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP-EHYACL 605 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~l 605 (835)
+-.....+.+.|++.+|++.|+++... -|+. .....+..++...|++++|...|+...+.|.-.|.. ..+-.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 334455566778888888888887764 2321 234566677777788888888887777666555542 222222
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc-----------------h
Q 043955 606 VDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN-----------------Y 668 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----------------~ 668 (835)
+..+... ... .+ +. -+..+....|...++.+++.-|+++-. -
T Consensus 86 g~~~~~~--~~~---~~---~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 86 GLSYYKQ--IPG---IL---RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHH--HHH---HH----T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--Ccc---ch---hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 000 00 01 122233445555555555555554322 2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 669 VLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 669 ~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...+..|.+.|+|..|..-.+.+-+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3457789999999998877665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.15 Score=40.67 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
...+..|+.++.+.|++++|++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677778888888888888877765
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.8 Score=37.53 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=80.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA 618 (835)
.-.|..++..++..+...+ .+..-++-++.--..+-+-+--.+.++++-+-|.+.|-. ..-.+|..+.+.|...|=
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHHH
Confidence 3457778888888887653 122223333322222223344455666665555555521 122345555555544432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 619 YQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 619 ~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
..--|++...+|.-|.-..++..+++-+..+|...+-+++.|.+.|...++.++++..-++|++
T Consensus 89 ---------------vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 ---------------VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2234566677888899999999998877778889999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.39 Score=43.90 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhh----hcCCCCCChhH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMR----CDYQLDPWPEH 601 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~i~p~~~~ 601 (835)
...++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+. +++|+.|+.++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455556666666677777666666 344 34456666667777777777766666543 34577776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.2 Score=40.44 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=70.8
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcC
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHS 645 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~ 645 (835)
.+++.-.+.+..+++..++..+. -+.|. .++-.+-+.++.+.|++++|..++++. .-.|....-.+|+..|....
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444456778888888888887 67784 666667777888999999999999988 33455556678888888777
Q ss_pred chhHHHHHHHHHHhcCCC
Q 043955 646 NKELGEIVAKKLLELDPG 663 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~ 663 (835)
.-..=...++.+++..|+
T Consensus 92 ~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGAD 109 (160)
T ss_pred CChHHHHHHHHHHhcCCC
Confidence 767777888888888774
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.68 E-value=13 Score=43.02 Aligned_cols=103 Identities=18% Similarity=0.294 Sum_probs=51.0
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCcHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFA-PDHITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~ 583 (835)
......|++++|..+|+- .|+++.+++++.+.+.+-+. |+. .....-...+....|.
T Consensus 422 ~~~e~~g~~~dAi~Ly~L------------------a~~~d~vl~lln~~Ls~~l~~~~~----~~~~~s~~~~l~~la~ 479 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHL------------------AEEYDKVLSLLNRLLSQVLSQPSS----SSLSDSERERLIELAK 479 (613)
T ss_dssp HHHHHCT-HHHHHHHHHH------------------TT-HHHHHHHHHHHHHHHHHCSST----SSSSSTTTTSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH------------------HhhHHHHHHHHHHHHHHHHcCccc----cccccchhhhHHHHHH
Confidence 334566777777777654 34666677766665542100 000 0000001223344555
Q ss_pred HHHHHhhhcC----CCCC-ChhHHHHHHHH-----HhhcCCHHHHHHHHHhCCCCC
Q 043955 584 KFLEIMRCDY----QLDP-WPEHYACLVDL-----LGRANHLEEAYQFVRSMQIEP 629 (835)
Q Consensus 584 ~~~~~m~~~~----~i~p-~~~~y~~lv~~-----l~r~g~~~eA~~~~~~m~~~p 629 (835)
++.+.....- .+.+ ..+++..|.++ +.++|++++|++.+++.++-|
T Consensus 480 ~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 480 EILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 5554433211 1233 24555555544 467999999999999998888
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=17 Score=41.89 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHH----HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 043955 97 NSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIIS----AYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACED 172 (835)
Q Consensus 97 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 172 (835)
..-+++..+...++.|..+-..-.. |...-..+.. -+-+.|++++|...|-+-... +.| +.+++-+-.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 3445666666677777777665543 2222223333 344679999998888776532 333 234455544
Q ss_pred CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCC
Q 043955 173 SSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLE 222 (835)
Q Consensus 173 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 222 (835)
......--..++.+.+.|+.... .-+.|+..|.+.++.+.-.++.+..+
T Consensus 410 aq~IknLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 44555555667777788876433 34789999999999888887777665
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.59 E-value=3.8 Score=44.19 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=53.8
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHH--HHHHHHHHHhhc
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQ-I-EPTAE--VWCALLGACRVH 644 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~--~~~~ll~a~~~~ 644 (835)
+..++.+.|..+||.+.|..|.+++...-.......++..|...+++.|+..++.+-. + .|.+. .|.+.|-..|.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334445566666666666555443222223344456666666666777766666652 1 23333 344433333333
Q ss_pred Cch---------------hHHHHHHHHHHhcCCCCCCch
Q 043955 645 SNK---------------ELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 645 ~~~---------------~~a~~~~~~~~~l~p~~~~~~ 668 (835)
++. ..|.++..++.+.+|.-+.+.
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 321 235578889999999876553
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.2 Score=40.38 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=98.5
Q ss_pred HHHHHHhcCChhhHHHHhhhCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhc
Q 043955 503 LVDMYARCGALDIANKVFNCVQT--K----DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACS 574 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~ 574 (835)
....+...|++++|.+.|+.+.. | -..+.-.++.++-+.|++++|+..|++.++ .-|++ +-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHH
Confidence 34456688999999999998874 2 223566788899999999999999999988 45654 23333333332
Q ss_pred ccCcH-------------HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH--HHH
Q 043955 575 HSGLI-------------NEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCA--LLG 639 (835)
Q Consensus 575 ~~g~~-------------~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~--ll~ 639 (835)
+-... .+|...|+ .++.-+-.+....+|...+..+. +...-.. ...
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~----------------~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFE----------------ELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHH----------------HHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHH----------------HHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 22211 22333333 34444444555555555444331 0001111 223
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCCCCC---chHHHHHHHHhcCCchHHHHH
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPGNPG---NYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~ 687 (835)
-+...|+..-|..-++.+++--|+.+. +...|...|...|.-+.+...
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~~ 200 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADTR 200 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHHH
Confidence 466778889999999999999997543 457788889999988854443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.69 Score=45.48 Aligned_cols=101 Identities=19% Similarity=0.119 Sum_probs=80.6
Q ss_pred hHHHHhhhCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc---------
Q 043955 515 IANKVFNCVQ--TKDLILWTSMINANGLH-----GRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGL--------- 578 (835)
Q Consensus 515 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~--------- 578 (835)
-.+..|.... ++|-.+|-+++..+..+ ++.+=-...++.|.+-|+.-|-.+|..||..+-+...
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677777 67889999999988765 4566666778889999999999999999987655432
Q ss_pred -------HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHH
Q 043955 579 -------INEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLE 616 (835)
Q Consensus 579 -------~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~ 616 (835)
-+=|+.+++.|. .+|+.||-+.-..+++++||.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 234778899997 6699999999999999999998643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.37 Score=49.80 Aligned_cols=127 Identities=11% Similarity=0.046 Sum_probs=88.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHH---hhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCC---CHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEI---MRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-----QIEP---TAE 632 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~~~p---~~~ 632 (835)
.|..|...+.-.|+++.|+...+. +.++||-.. ....|+.+.+.+.-.|+++.|.+.++.. .+.- .+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355566666677889999887652 345566554 3567888899999999999999888764 1111 233
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHh----cCC--CCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLE----LDP--GNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~----l~p--~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
..-+|.+++....+++.|+....+=+. |+. ....++-.|+|.|.+.|.-+.|....++-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455777788888888888877666443 322 23456888999999999999987765443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.19 E-value=4.5 Score=45.02 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHH-Hhcc---cCcHHHHHHHHHHhhhcCCCCCCh
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAES-FAPDH-----ITFLALLY-ACSH---SGLINEGKKFLEIMRCDYQLDPWP 599 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd~-----~t~~~ll~-a~~~---~g~~~~a~~~~~~m~~~~~i~p~~ 599 (835)
....+++..+-+|+-+.+++++.+..+.+ ++-.- .+|..++. .|.. ...++++.++++.+.+.| |+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 34455666666777777777777655421 21111 12333333 3333 456777888888877554 653
Q ss_pred hHH-HHHHHHHhhcCCHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch-HHH
Q 043955 600 EHY-ACLVDLLGRANHLEEAYQFVRSMQ-----IEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY-VLI 671 (835)
Q Consensus 600 ~~y-~~lv~~l~r~g~~~eA~~~~~~m~-----~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~-~~l 671 (835)
.-| ---..++...|++++|.+.++++- .+. ....+--+...+....+.+.|...+.++.+.+....+.| ...
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 333 333456667788888888888651 111 122333455666677888999999999888777655554 566
Q ss_pred HHHHHhcCCc-------hHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHH
Q 043955 672 SNVFAASRKW-------KDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEK 737 (835)
Q Consensus 672 ~~~y~~~g~~-------~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~ 737 (835)
+-+|...|+- ++|.+..+....... + .+| ++-|.-..+..+.++...+
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~-------------k----~~g-k~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLKQ-------------K----KAG-KSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHHh-------------h----hcc-CCCChHHHHHHHHHHHHhc
Confidence 7778888888 444444433222111 1 123 5667777777777766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.13 E-value=4.1 Score=36.76 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=37.0
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLM 453 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m 453 (835)
+........+..+++.+..+..+.|.++..|++... ++....+.. ..+.......+..|.+.+.++++..++.++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 333444444444444443333466777777766532 223333331 233344444556666666666666666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.54 Score=40.49 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=41.5
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CC-CHHHHHHH---HHHHhhc
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI-EP-TAEVWCAL---LGACRVH 644 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p-~~~~~~~l---l~a~~~~ 644 (835)
+.+..|+++.|++.|.... .+-| +...|+.-...+.-+|+.++|++-+++. .+ .| ......+. ...+|..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3445555555555555443 3444 3555555555555555555555555444 11 11 11111121 2335566
Q ss_pred CchhHHHHHHHHHHhcC
Q 043955 645 SNKELGEIVAKKLLELD 661 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~ 661 (835)
||.|.|+.-++.+-++.
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666655555544443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.70 E-value=13 Score=38.09 Aligned_cols=19 Identities=5% Similarity=-0.298 Sum_probs=12.4
Q ss_pred HHHhhcCchhHHHHHHHHH
Q 043955 639 GACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~ 657 (835)
..+...+|++.|...++-.
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 3455667777777777644
|
It is also involved in sporulation []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.65 Score=48.47 Aligned_cols=137 Identities=16% Similarity=0.061 Sum_probs=94.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANH 614 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 614 (835)
.+.|.+.|++..|...|++.... |. +...-..++...... .....+..+.-.+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 46777888888888888887651 11 011111122222211 112345567777888899
Q ss_pred HHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHH-HHHHHHH
Q 043955 615 LEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDV-EQVRMRM 691 (835)
Q Consensus 615 ~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 691 (835)
+.+|++..+.. .++|+. -..--=..||...|+++.|+..++++++++|+|-.+-..|+.+-.+..+..+. .++++.|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 566644 35555567888899999999999999999999988888888887777766665 5666666
Q ss_pred Hc
Q 043955 692 RG 693 (835)
Q Consensus 692 ~~ 693 (835)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 44
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.2 Score=39.66 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 043955 647 KELGEIVAKKLLELDPGN 664 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~ 664 (835)
+..|...++++++.-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 556666777777777764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.3 Score=40.55 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=62.9
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHh
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPTAEVWCALLGACR 642 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~ 642 (835)
....-+.+.|++++|..+|.-+. -.+| +.+-+-.|.-++-..|++++|.+++..+ +-.|.+.. .....+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~---~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l 116 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLC---IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQL 116 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHH
Confidence 44445668899999999998776 3456 4555666777778888999999888765 33344432 2334455
Q ss_pred hcCchhHHHHHHHHHHhcCCC
Q 043955 643 VHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..|+.+.|+..++.+++ .|.
T Consensus 117 ~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 117 LMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HhCCHHHHHHHHHHHHh-Ccc
Confidence 67899999999888887 344
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.35 E-value=2.6 Score=42.30 Aligned_cols=116 Identities=11% Similarity=0.068 Sum_probs=80.8
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH---HHHhhcCch
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALL---GACRVHSNK 647 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll---~a~~~~~~~ 647 (835)
.....|+..++...|..... ..| +.+.-..|..+|..+|+.++|..++..+|.+-...-|..|- .....-.+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34567888888888877663 345 35667778888999999999999999998766554444421 112222222
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 648 ELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 648 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
.. ....++-+.-+|+|...-..|+..|...|+.++|.+..-.+
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 12345566789999999999999999999999998764433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.75 Score=47.64 Aligned_cols=254 Identities=13% Similarity=0.040 Sum_probs=142.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC---CChhHHHHHHHHhccccCchHHHHHHHHHHH--hCCC----chhHHHHHHHHH
Q 043955 336 GYAQNNCHLKALELFRTVQLEGLD---ADVMIIGSVLMACSGLKCMSQTKEIHGYIIR--KGLS----DLVILNAIVDVY 406 (835)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~--~~~~----~~~~~~~li~~y 406 (835)
-+++.|+....+.+|+..++.|.. .=+..|+.+-.++.-.+++++|.+.|.+-+. .-+. .......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 356777778888888877776632 2233455556667777788888887754332 1111 111233334444
Q ss_pred HhcCChhhHHHHHHhcC-------CC--CchhHHHHHHHHHhCCC--------------------hHHHHHHHHHHhh--
Q 043955 407 GKCGNIDYSRNVFESIE-------SK--DVVSWTSMISSYVHNGL--------------------ANEALELFYLMNE-- 455 (835)
Q Consensus 407 ~k~g~~~~A~~~f~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~Al~lf~~m~~-- 455 (835)
--.|.+++|.-.-.+-. ++ ....+-.+...|...|+ .+.|.+.|.+=++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543221110 10 11122223344433332 2234444443221
Q ss_pred --cCCc-CChhhhHhHHHHhhcccchhhHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCChhhHHHHhhhCC---
Q 043955 456 --ANVE-SDSITLVSALSAASSLSILKKGKELNGFIIR----KGFN-LEGSVASSLVDMYARCGALDIANKVFNCVQ--- 524 (835)
Q Consensus 456 --~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 524 (835)
.|-. .-...|..+-..+.-+|+++.+...|..-.. .|-. .....++.|.+.|.-.|+++.|.+.|....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 0112344444445557889999888876443 2221 224456678888889999999999887532
Q ss_pred ----CCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 043955 525 ----TKDL--ILWTSMINANGLHGRGKVAIDLFYKMEAE----S-FAPDHITFLALLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 525 ----~~~~--~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g-~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (835)
++.+ .+.-++...|--...+++|+..+.+=+.- + ..-....+.+|..|+...|..+.|+.+.+.-
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3433 35667788888888899999888774431 1 1122356788999999999999998877643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.1 Score=44.38 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
.|+.-+.. .+.|++.+|...|..-++. -|+. -.+.-|..++...|+.++|..+|..+.++|+-.|. ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35554443 3667788888888888874 2332 23445778888899999999999999888888885 688888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m 625 (835)
++..+++.|+-++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 888888888888888777766
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.01 E-value=23 Score=39.29 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=124.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA 572 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a 572 (835)
+...|...++.-.+.|+.+...-.|++..-| =..-|--++.-....|+.+-|-.+..+..+--++-...+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456677777777888888888888877644 1234555554444458777777766665553333233332222223
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHHh
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAY---QFVRSM-QIEPTAEVWCALL-----GACR 642 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll-----~a~~ 642 (835)
+-+.|+.+.|..+++....++ |+ ++.-.--+.+..|.|.++.+. +++... +.+-+..+...+. --..
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 678899999999999998775 65 444444567788999999988 666555 4444444443333 1245
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
+.++.+.|..+..++.+..|++..-|..+.++-...+.-.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 6688999999999999999999999999999877666333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.4 Score=39.38 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=48.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 605 LVDLLGRANHLEEAYQFVRSM----QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m----~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
-.....+.|++++|.+.++.. |..|-+ -+--.|+.++...++.+.|...+++.++|.|.++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 344455678888888888777 555532 245567788999999999999999999999988754
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.64 E-value=15 Score=36.33 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD----HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 599 (835)
..|-.=+..-.+.|++++|.+.|+.+..+ .|. .-+...++.|.-+.++.++|...+++..+.|+-.|++
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 34444455555778888888888887764 232 2456666777777788888888877777777666664
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.84 Score=42.57 Aligned_cols=88 Identities=15% Similarity=0.082 Sum_probs=67.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-C-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 606 VDLLGRANHLEEAYQFVRSM-QIEP-T-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m-~~~p-~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
++-+...|.+++|..-+..+ .+-| . ++.|..-..+..+.+..+.|+....++++|.|.+..+.+.-+-+|...
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 35566778888888777665 2222 2 233444445556778899999999999999999888888889999999
Q ss_pred CCchHHHHHHHHHHc
Q 043955 679 RKWKDVEQVRMRMRG 693 (835)
Q Consensus 679 g~~~~a~~~~~~m~~ 693 (835)
.++++|.+-.+.+.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999988876
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.5 Score=43.53 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=74.3
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH-HHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPTA-EVWCALL 638 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~-~~~~~ll 638 (835)
.|..-+. ....|++.+|..-|....+.|.-.+ ....+--|+..+.+.|++++|...+..+ |--|-+ ...-=|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3467889999999999998885555 4677777999999999999998887766 443322 2333444
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
-.....|+.+.|...++++++-.|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 55567789999999999999999976543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.4 Score=43.47 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=60.5
Q ss_pred HHHHHHhcC--CCCcchHHHHHHHHHhc-----CChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccC-----------
Q 043955 11 AEQLFDKVS--QRTVFTWNAMLGAYVSN-----GEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLK----------- 72 (835)
Q Consensus 11 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----------- 72 (835)
.+..|...+ ++|-.+|-+++..+... ++.+-....+..|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566666 56777777777766543 455555666777888888888888888877664432
Q ss_pred -----CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC
Q 043955 73 -----DLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCY 107 (835)
Q Consensus 73 -----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 107 (835)
.-..+..++++|...|+.||-.+-..|++++++.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 22335555556666666666555555555555544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.97 E-value=4 Score=47.18 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=37.3
Q ss_pred HHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH-hCCCCchhHHHHHHHHHHhc---
Q 043955 435 SSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR-KGFNLEGSVASSLVDMYARC--- 510 (835)
Q Consensus 435 ~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~k~--- 510 (835)
..+.-.|++|.|++.+-+ ..+...|.+.+...|.-+.-+...+... +.+.. ..-.+...-+..||..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888888888776 3345667777766666554433222221 11111 11111113355677777653
Q ss_pred CChhhHHHHhhhCC
Q 043955 511 GALDIANKVFNCVQ 524 (835)
Q Consensus 511 g~~~~A~~~f~~~~ 524 (835)
.+..+|.++|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 45666666665443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.57 E-value=5.8 Score=42.85 Aligned_cols=140 Identities=14% Similarity=0.079 Sum_probs=82.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHH---
Q 043955 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLE--- 616 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~--- 616 (835)
+..+.+.-+++-++.++ +.||-.+-..+| |--.+.-+.|+.++|++..+.-. ..|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhhhhhccc
Confidence 44556666667777776 678776544443 33445667888888876553200 0111111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC--CCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 617 EAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG--NPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 617 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
...+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-+.+..|.+.|-..+++.|+..+..+-.+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111221123333444556777778888888888888888877764 4566777888888888888888887665443
|
The molecular function of this protein is uncertain. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.43 E-value=27 Score=37.19 Aligned_cols=166 Identities=15% Similarity=0.232 Sum_probs=112.7
Q ss_pred cCChhhHHHHhhhCCC----CChhHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhcccCcHH
Q 043955 510 CGALDIANKVFNCVQT----KDLILWTSMINANGL-HGRGKVAIDLFYKMEAESFAPDHI----TFLALLYACSHSGLIN 580 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~-~g~~~~Al~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~ 580 (835)
.|+.++|.+.+..+.. +.+..+-+|+.+-.. ..+..+|+++|++..- .-|-.. ...--+.-+...|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5999999999988874 345677777777554 4589999999999887 566543 2333444567899999
Q ss_pred HHHHHHHHhhhcCCCCCChhHH-HHHHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 581 EGKKFLEIMRCDYQLDPWPEHY-ACLVDLLGRA---NHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p~~~~y-~~lv~~l~r~---g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
++..+-..-...|.-.|=...+ .-.+.++.+- -+.++-.+++..|+-+--..+|-.+...-.+.|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9887776666677777743333 3333343333 33444445555553222344777777778899999999999999
Q ss_pred HHhcCCCCCCchHHHHHHHHhc
Q 043955 657 LLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 657 ~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
++.+.+. ...-...+++|..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHH
Confidence 9999844 44555666677654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.16 Score=46.28 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=61.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhH
Q 043955 165 AALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCK 244 (835)
Q Consensus 165 ~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 244 (835)
.+++.+.+.+........+..+.+.+...+..+.+.++..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777777777778888888777677788899999999999888888888874332 444566777777777777
Q ss_pred HHHHHHHH
Q 043955 245 AMQFFREL 252 (835)
Q Consensus 245 A~~l~~~m 252 (835)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.56 E-value=7.2 Score=40.26 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcCCcCChhhhHhHHHHhhc--c----cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHH
Q 043955 444 NEALELFYLMNEANVESDSITLVSALSAASS--L----SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIAN 517 (835)
Q Consensus 444 ~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~--~----~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 517 (835)
++.+.+++.|.+.|++-+..+|.+.+..... . .....++.++..|.+...-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 3456678888888888888777553333222 1 123344444444444321100
Q ss_pred HHhhhCCCCChhHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccc-Cc--HHHHHHHHHHh
Q 043955 518 KVFNCVQTKDLILWTSMINANGLHG----RGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHS-GL--INEGKKFLEIM 589 (835)
Q Consensus 518 ~~f~~~~~~~~~~~~~li~~~~~~g----~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~-g~--~~~a~~~~~~m 589 (835)
.++-..+.+|+.. ..+ -.+++...|+.+.+.|+..+. ..+.+-+-++... .. +....++++.+
T Consensus 138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1222334444333 111 135677888888888887755 3454444443322 22 45778888888
Q ss_pred hhcCCCCCChhHHHHHHHHH
Q 043955 590 RCDYQLDPWPEHYACLVDLL 609 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l 609 (835)
.+. |+++...||..++-+-
T Consensus 209 ~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHc-CCccccccccHHHHHH
Confidence 876 9999988988766544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.43 E-value=8.2 Score=42.37 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=55.7
Q ss_pred HHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhH
Q 043955 201 LIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNG 280 (835)
Q Consensus 201 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 280 (835)
-.+...++|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... +..++--+...|+.+.-
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3455668889999988877765 556899999999999999999998887643 55555556666666666
Q ss_pred HHHHHHHHHhC
Q 043955 281 KELHAYAIKQG 291 (835)
Q Consensus 281 ~~i~~~~~~~g 291 (835)
..+-......|
T Consensus 393 ~kl~~~a~~~~ 403 (443)
T PF04053_consen 393 SKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 66555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.2 Score=30.77 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI 564 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~ 564 (835)
.+|..+...|...|+.++|+++|++.++ ..||..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 3567777788888888888888888877 566654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.68 E-value=36 Score=36.18 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=27.0
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
+++.+.+...++.+.++.|.....|..++..+.
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 377888999999999999988777777776654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.52 E-value=3.2 Score=46.17 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=99.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh-----hHHHHHH-HHHh---hcCCHHHHH
Q 043955 549 DLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP-----EHYACLV-DLLG---RANHLEEAY 619 (835)
Q Consensus 549 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~lv-~~l~---r~g~~~eA~ 619 (835)
-+|+-+..- ++|. +..+++...=.|+-+.|++.+....+..++.-.. -.|..++ ..++ ..+.+++|.
T Consensus 178 G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 345555552 3443 3456666677899999999998776554554332 1233333 3334 366899999
Q ss_pred HHHHhC-CCCCCHHHHHHHHH-HHhhcCchhHHHHHHHHHHhcCCC----CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 620 QFVRSM-QIEPTAEVWCALLG-ACRVHSNKELGEIVAKKLLELDPG----NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 620 ~~~~~m-~~~p~~~~~~~ll~-a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++++.+ .--|+...|.-.-+ .++..||++.|...++++++..++ ..-.+.-+++.|...++|++|.+....+.+
T Consensus 254 ~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 254 ELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 999999 55689888876654 478899999999999988854332 233467789999999999999999887775
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.48 E-value=29 Score=36.00 Aligned_cols=18 Identities=0% Similarity=0.165 Sum_probs=13.5
Q ss_pred hHHHHHHHHhcCCchHHH
Q 043955 668 YVLISNVFAASRKWKDVE 685 (835)
Q Consensus 668 ~~~l~~~y~~~g~~~~a~ 685 (835)
+-.|+.||.+.|.-++-.
T Consensus 334 hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 334 HCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHHHHHHHhccchhHHH
Confidence 567889998888777643
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.37 E-value=1.1 Score=45.21 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=74.6
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHS 645 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~ 645 (835)
-..-|.++|.++||+..|..-. .+.| ++..|..-..+|.|..++.-|+.-.+.+ .+... .-.|..-..|-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556778899999999887554 5677 7788888888888988888887665554 22211 124555556666678
Q ss_pred chhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 646 NKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
+.+.|..-++.+++|+|++ .-|-.+|++.....|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E 213 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN----IELKKSLARINSLRE 213 (536)
T ss_pred hHHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHh
Confidence 8899999999999999984 334444544444333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.18 E-value=0.72 Score=29.52 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777888888888888888888884
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.08 E-value=17 Score=34.84 Aligned_cols=180 Identities=13% Similarity=0.060 Sum_probs=106.3
Q ss_pred HHhcCChhhHHHHhhhCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHH
Q 043955 507 YARCGALDIANKVFNCVQ--TK-DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEG 582 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a 582 (835)
|-..|-..-|+--|.... .| -+..+|-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++...|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 334455555555555433 23 345678777778888999999999988887 55543 4555545566778888888
Q ss_pred HHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 583 KKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
.+-|...-+. +|+-.--+...-+-.+.-+..+|..-+.+--..-|..-|+..+-.+.- |.+.. +.+.+++.+-..
T Consensus 153 q~d~~~fYQ~---D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQD---DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKISE-ETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhc---CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhcc
Confidence 8766554433 342211111222223444666776544333234566677776654432 22111 223334433333
Q ss_pred CC-------CCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 663 GN-------PGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 663 ~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++ +.+|.-|+.-|-..|..++|..+.|....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33 34688899999999999999999986654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.03 E-value=24 Score=34.56 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HH---HHHHHHH
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH---IT---FLALLYA 572 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~---~t---~~~ll~a 572 (835)
.++--..+|..||+.+.|-..+++.-+ ....-++++|+++|++...- +.-+. .. +..+-..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHhhhH
Confidence 345567789999999888777665321 22345677788888776542 11111 11 1222233
Q ss_pred hcccCcHHHHHHHHHHhhh---cCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHh
Q 043955 573 CSHSGLINEGKKFLEIMRC---DYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM---Q--IEP-TAEVWCALLGACR 642 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~---~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m---~--~~p-~~~~~~~ll~a~~ 642 (835)
+.+...++||-..|..-.. ...--|+ -..|...|-++.-+.++..|+..++.- | ..| |..+...||.++
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 4455666666555542210 0011122 233445555666677888899888873 3 233 344777888886
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
..||.|....+.. ++....|-|.|+
T Consensus 239 d~gD~E~~~kvl~---------sp~~r~MDneya 263 (308)
T KOG1585|consen 239 DEGDIEEIKKVLS---------SPTVRNMDNEYA 263 (308)
T ss_pred ccCCHHHHHHHHc---------ChHhhhhhHHHH
Confidence 4677777666553 444445555554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.2 Score=28.41 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD 562 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd 562 (835)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677788888888888888888888877 5665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.20 E-value=2.9 Score=42.23 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEA-----ESFAPDHITFLAL 569 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~-----~g~~Pd~~t~~~l 569 (835)
.++..++..|..||+.+.+.+.++++.+ -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4567889999999999999999988764 3778999999999999999999999998875 4566655544433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.71 E-value=39 Score=34.28 Aligned_cols=54 Identities=2% Similarity=0.068 Sum_probs=38.6
Q ss_pred hccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCC
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESK 425 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~ 425 (835)
....++...+..+++.+......+..+.-.|+..|...|+.+.|..+++.++..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 344566666666666666666666567777888888888888888888888753
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.61 E-value=49 Score=35.42 Aligned_cols=439 Identities=12% Similarity=0.096 Sum_probs=215.6
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043955 193 LQVYVANALIAMYARCGKMTEAAGVLYQLENKDS---VSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVS 269 (835)
Q Consensus 193 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 269 (835)
.|+..|-.||.-|...|..++-++++++|..|-+ ..|..-|++=....++.....+|.+.....+..| .+..-|.
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl~ 117 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYLE 117 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHHH
Confidence 3677888999999999999999999999988754 4688888888888888888888888877644433 3333333
Q ss_pred HHhccCChHhH------HHHHHHHHH-hCCCcc-ccccchhhhhhh---c------cCChhHHHHHHHhcCCCCcc----
Q 043955 270 ASGRLGNLLNG------KELHAYAIK-QGFVSD-LQIGNTLMDMYA---K------CCCVNYMGRVFYQMTAQDFI---- 328 (835)
Q Consensus 270 a~~~~~~~~~a------~~i~~~~~~-~g~~~~-~~~~~~Li~~y~---~------~g~~~~A~~~f~~m~~~~~~---- 328 (835)
-..+.+.+-.| -+.++.++. .++.|- ...|+..+...- . ..++|..++.+.++......
T Consensus 118 YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nlek 197 (660)
T COG5107 118 YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEK 197 (660)
T ss_pred HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHH
Confidence 33333322221 234444444 234432 334444433221 1 23455566666666543111
Q ss_pred cHH------HHHHHHHh---cC----ChHHHHHHHHHHHH--cCCCC----ChhHHHHHHH-Hhcc---------cc---
Q 043955 329 SWT------TIIAGYAQ---NN----CHLKALELFRTVQL--EGLDA----DVMIIGSVLM-ACSG---------LK--- 376 (835)
Q Consensus 329 ~~~------~li~~~~~---~g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~-a~~~---------~~--- 376 (835)
.|+ .=++.... -| -+-.|...+++... .|... +..|++.+-+ +.++ ..
T Consensus 198 lW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~ 277 (660)
T COG5107 198 LWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLK 277 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcc
Confidence 121 11111110 01 13445555555532 24322 2222222111 0000 00
Q ss_pred ---C--chHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHH-hCCChHHHHHHH
Q 043955 377 ---C--MSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYV-HNGLANEALELF 450 (835)
Q Consensus 377 ---~--~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~Al~lf 450 (835)
+ .+...-+|.+++..-+-...+|----..+...++-+.|......-.+ +..+.+..++-|- -..+.++....|
T Consensus 278 L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~-~spsL~~~lse~yel~nd~e~v~~~f 356 (660)
T COG5107 278 LGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE-MSPSLTMFLSEYYELVNDEEAVYGCF 356 (660)
T ss_pred cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc-CCCchheeHHHHHhhcccHHHHhhhH
Confidence 0 00111122222222221222333333333444555555554433221 1111222222222 233333333334
Q ss_pred HHHhhcCCcCChhhhHhHHHHhh---cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--
Q 043955 451 YLMNEANVESDSITLVSALSAAS---SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-- 525 (835)
Q Consensus 451 ~~m~~~g~~p~~~t~~~ll~a~~---~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-- 525 (835)
+...+. -..--+.+.+=+ .-++.+.-.++. .+. ...-.+++..+++.-.+..-++.|+.+|-+..+
T Consensus 357 dk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell---~kr-~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 357 DKCTQD-----LKRKYSMGESESASKVDNNFEYSKELL---LKR-INKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred HHHHHH-----HHHHHhhhhhhhhccccCCccccHHHH---HHH-HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 333210 000000000000 011221111111 110 012245666777777777778888888876653
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhH
Q 043955 526 ---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL-ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEH 601 (835)
Q Consensus 526 ---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~ 601 (835)
+++..++++|.-+++ |+..-|..+|+--+. .-||...|. -.+.-+..-++-+.|+.+|+.......-.--...
T Consensus 428 ~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 428 IVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred CCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 467778888876654 666777888876555 356654433 3344455677888888888855432211112467
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCc
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSN 646 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~ 646 (835)
|.-|++--..-|.+..|..+=++| ..-|...+-..+++-+.+..+
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhcc
Confidence 888888888888888888777777 334444344444455544433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.36 E-value=28 Score=32.31 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=52.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-C
Q 043955 551 FYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QI-E 628 (835)
Q Consensus 551 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~ 628 (835)
+.+++..++-||.......|-. +.+....+.++=-.|.+..+ .+|.-++++|-..|++-+|..++++. +. .
T Consensus 48 L~qllq~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 48 LHQLLQYHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHhhcccCCcHHHHHHHHH--hHccChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 4455566677777655544422 22233333333333332211 25677889999999999999999885 22 2
Q ss_pred CCHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 629 PTAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 629 p~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
+.+ .-+|.|-..++|...=-.++
T Consensus 121 ~~~---~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 121 VPA---RKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred CCH---HHHHHHHHHcCCHHHHHHHH
Confidence 222 34555555555544433333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.31 E-value=3 Score=42.34 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=64.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhc
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRA 612 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~ 612 (835)
..-|.+.|.+++|+..|.+-+. +.| |.+++..-..||.+...+..|..-.+... .++-. ...|+--+.+=...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai---aLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI---ALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH---HhhHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999887 678 89999998899998888877776555443 11111 22333333332334
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHH
Q 043955 613 NHLEEAYQFVRSM-QIEPTAEVWCA 636 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p~~~~~~~ 636 (835)
|.+.||.+-.+.. .++|+..-+.-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHH
Confidence 5666666666655 67887554433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.28 E-value=1.5 Score=28.71 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777778888888888888888754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.28 E-value=7.1 Score=40.16 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=26.4
Q ss_pred HHhCCChHHHHHHHHHHhhc--CCcCChhhhHhHHHHhhcccchhhHHH
Q 043955 437 YVHNGLANEALELFYLMNEA--NVESDSITLVSALSAASSLSILKKGKE 483 (835)
Q Consensus 437 ~~~~g~~~~Al~lf~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~ 483 (835)
+.+..+.++|+..+.+-+.. ...---.++..+..+.+..|..+++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34667788888887776542 111122455555666666555554443
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.25 E-value=9.5 Score=43.01 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=107.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh----------hhhHhHHHHhhcccchhhHHHHHHHHHH-hC-CCCchh
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDS----------ITLVSALSAASSLSILKKGKELNGFIIR-KG-FNLEGS 498 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g-~~~~~~ 498 (835)
..|+-.|-...+++.-+++.+.++. -||. +.|.-.|.-=.+-|+-++|..+.--+++ .| +.|
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap--- 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP--- 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC---
Confidence 3455566666777777777777665 2322 2333334433445666666654444433 22 222
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhcc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI---TFLALLYACSH 575 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~---t~~~ll~a~~~ 575 (835)
|||+-||++=. .|- +-+.|-..+..+.|++.|++.-+ +.|+.. .+..||.|-.+
T Consensus 279 ------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 279 ------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred ------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 56778887422 211 12334555667788889998887 788864 45556554322
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAK 655 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~ 655 (835)
. ++...++ +. .--.+-.+++|.|.++.-.+.++- .+++++....+|...|..+++
T Consensus 336 ~--Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 336 H--FENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred h--ccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHH
Confidence 1 1111111 10 011255788999999887777653 356777777899999999999
Q ss_pred HHHhcCCCC
Q 043955 656 KLLELDPGN 664 (835)
Q Consensus 656 ~~~~l~p~~ 664 (835)
++++|.|..
T Consensus 391 ~mfKLk~P~ 399 (1226)
T KOG4279|consen 391 MMFKLKPPV 399 (1226)
T ss_pred HHhccCCce
Confidence 999999864
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.21 E-value=4.5 Score=41.08 Aligned_cols=159 Identities=13% Similarity=0.013 Sum_probs=108.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHH----HHHHHHhhcCCH
Q 043955 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYA----CLVDLLGRANHL 615 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~----~lv~~l~r~g~~ 615 (835)
-+|+..+|-..++++++. .+.|-..+.-.=.+|...|..+.-+..++.+.... .|+...|+ .+.-.|...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999885 55566778888889999999999999888776432 34443333 334455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC----CCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 616 EEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG----NPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
++|++.-++. .+.| |.-.-.++.......++...|.+..++--..-.. -+-+|-..+-.|...+.++.|.++..
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 6666 4445556667778888888887776643222111 12234455556777789999999965
Q ss_pred HHHcCCCccCCc
Q 043955 690 RMRGSGLKKTPG 701 (835)
Q Consensus 690 ~m~~~~~~k~~g 701 (835)
.---+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 432233455554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.19 E-value=10 Score=34.11 Aligned_cols=86 Identities=21% Similarity=0.163 Sum_probs=57.9
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCchhHHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
..++.+++..+++.|. -+.|+ .+.-.+-+-++.+.|+++||..++++..-.+ ....-.+|+.-|..-..-..=..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 4777888888888877 66774 5555566677788889999999888884333 44455677777765544444555
Q ss_pred HHHHHHhcCCC
Q 043955 653 VAKKLLELDPG 663 (835)
Q Consensus 653 ~~~~~~~l~p~ 663 (835)
.++.+++-+++
T Consensus 99 ~A~~~le~~~~ 109 (153)
T TIGR02561 99 HADEVLARDAD 109 (153)
T ss_pred HHHHHHHhCCC
Confidence 66666655443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.59 E-value=28 Score=32.29 Aligned_cols=135 Identities=7% Similarity=0.042 Sum_probs=79.3
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhC-CChhHHHHHHhcCC
Q 043955 145 LGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANA-LIAMYARC-GKMTEAAGVLYQLE 222 (835)
Q Consensus 145 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~-li~~y~~~-g~~~~A~~~f~~~~ 222 (835)
++.++.+.+.+++|+...+..+++.+.+.|...... .++..++-+|...... |++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 455566666777777777777777777777654433 3344444444433332 22221111 01223333333332
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhC
Q 043955 223 NKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQG 291 (835)
Q Consensus 223 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 291 (835)
..+..++..+...|++-+|+++.+.... .+...-..++.+..+.+|...--.++......+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3456777888899999999998877532 233344667778878887777777777766544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.48 E-value=62 Score=39.22 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 043955 503 LVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEG 582 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 582 (835)
.++.--|.|-+.+|..++..=.++-...|.+...-+...+++++|.-+|+..=+ .--.+.|+.+.|+|.++
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333344556666666655433333334444445555555777777777765422 12346778889999999
Q ss_pred HHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH--------HHHHHHHHHHhhcCchhHHHHHH
Q 043955 583 KKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTA--------EVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~--------~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
..+-..+.. +-.--..+--.|+.-|..+|+.-||-++.....-.|.. ..|.--+..+..+++.+.-+.+.
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~iee~l 1062 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIEEVL 1062 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHHHHH
Confidence 998876641 11111334467888888999999999988887545532 23555555666666555444443
Q ss_pred H
Q 043955 655 K 655 (835)
Q Consensus 655 ~ 655 (835)
.
T Consensus 1063 ~ 1063 (1265)
T KOG1920|consen 1063 K 1063 (1265)
T ss_pred h
Confidence 3
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.96 E-value=51 Score=34.09 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--cccCc----HHHHHHHHHHhhhcCCCCCC
Q 043955 544 GKVAIDLFYKMEAESFAPDHITFLALLYAC--SHSGL----INEGKKFLEIMRCDYQLDPW 598 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~--~~~g~----~~~a~~~~~~m~~~~~i~p~ 598 (835)
.++.+.+++.|.+.|++-+..++.+.+... .+... ...+..+|+.|+++|..--.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 456788999999999999988877643322 23333 55688899999988755433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.63 E-value=84 Score=36.30 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 043955 545 KVAIDLFYKMEAESFAP-----DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~P-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
+..+++|-+.-...+-| ........+.-|++.|.++|-.-++..|- +++.++--+--+-++.++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 44556665554432222 11112233444555555555444444442 22333333333444555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCchhHH
Q 043955 620 QFVRSMQIEPTAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 620 ~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a 650 (835)
++.+. ..|...|..|++-+..+-.+-.+
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkPe~~~~ 709 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKPEFIKA 709 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCcHHHHH
Confidence 55554 46778899988888766554443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.49 E-value=52 Score=33.78 Aligned_cols=75 Identities=9% Similarity=0.008 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHh-hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVF-NCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA 572 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f-~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a 572 (835)
+++..+-..-+.++++.|+. .|...+ +.+..++ + .-..+.+++..|.. +|+..+.++.+. .||...-...+.+
T Consensus 203 D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~-~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-V-GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-h-HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 45666667777777777774 344444 3333333 2 34567778888875 688888888763 5566555555555
Q ss_pred hc
Q 043955 573 CS 574 (835)
Q Consensus 573 ~~ 574 (835)
|.
T Consensus 277 ~~ 278 (280)
T PRK09687 277 LK 278 (280)
T ss_pred Hh
Confidence 54
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.32 E-value=7.4 Score=36.74 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKD------LILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
.+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566677777777777777777665432 22455556666666666666665555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=2.4 Score=42.88 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 634 WCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.++|-.++...++.+.|.++.++++.+.|+++.-+.--+-+|++.|.|..|..-.+..-+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 566668889999999999999999999999999999999999999999999887664433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.78 E-value=14 Score=33.95 Aligned_cols=116 Identities=12% Similarity=0.009 Sum_probs=55.6
Q ss_pred ccCChhHHHHHHHhcCCCCcccHHHHH-----HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH---hccccCch
Q 043955 308 KCCCVNYMGRVFYQMTAQDFISWTTII-----AGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA---CSGLKCMS 379 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a---~~~~~~~~ 379 (835)
+.+..++|..-|..+...+--+|-.|. ...++.|+..+|...|.+.-.....|-..-=..-|++ +...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 345556666666666555444444432 3456677778888888777665444443311111111 23344444
Q ss_pred HHHHHHHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 043955 380 QTKEIHGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNVFESIE 423 (835)
Q Consensus 380 ~~~~i~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~ 423 (835)
......+-+...+-+- .....+|.-.-.|.|++.+|.+.|+.+-
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 4333333222222221 1234444444455555555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=83.72 E-value=1.6 Score=28.48 Aligned_cols=25 Identities=16% Similarity=-0.021 Sum_probs=11.6
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 634 WCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
|..|...|...|+.+.|+..+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555533
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.65 E-value=3 Score=39.59 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=52.7
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGE 651 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~ 651 (835)
..|++.-|+--|.... .|.|+ ++.|+-++--|..+|+++-|.+.++.. .+.|.-. +...-.-+..--|+.++|.
T Consensus 77 SlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 3456666666555443 66675 667777777777777777777777765 4455321 2111122233456777777
Q ss_pred HHHHHHHhcCCCCC
Q 043955 652 IVAKKLLELDPGNP 665 (835)
Q Consensus 652 ~~~~~~~~l~p~~~ 665 (835)
.-+.+..+-||+||
T Consensus 154 ~d~~~fYQ~D~~DP 167 (297)
T COG4785 154 DDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHhcCCCCh
Confidence 77777777777664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.37 E-value=58 Score=33.44 Aligned_cols=231 Identities=9% Similarity=-0.022 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCCh----HHHHHHHHHHhhcCCcCChhhhHhHHHHhh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLA----NEALELFYLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
+....+..+.+.|..+....+..-+..+|...-..-+.++.+.|.. ++++.++..+... .|+...-.+.+.+..
T Consensus 39 vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG 116 (280)
T PRK09687 39 KRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATG 116 (280)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHh
Confidence 3333444444444332222222222334444444445555555543 3566666655332 345444445555544
Q ss_pred cccchh--hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcC-ChHHHHHH
Q 043955 474 SLSILK--KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHG-RGKVAIDL 550 (835)
Q Consensus 474 ~~~~~~--~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~Al~l 550 (835)
..+.-. ........+...-.+++..+--..+.++++.|+.+....+...+..+|...-..-+.++++.+ ...++...
T Consensus 117 ~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~ 196 (280)
T PRK09687 117 HRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREA 196 (280)
T ss_pred cccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 443211 111223333333344466666666777777776433333333333444444444444555443 24456666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043955 551 FYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP 629 (835)
Q Consensus 551 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 629 (835)
+..++. .+|...-...+.++...|. .++...+-...++ ++ ...-.+.+++.-|.- +|...+.++ .-.|
T Consensus 197 L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 197 FVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 666663 4555555566666666666 3444444433322 11 123455666666663 566655555 2244
Q ss_pred CHHHHHHHHHHH
Q 043955 630 TAEVWCALLGAC 641 (835)
Q Consensus 630 ~~~~~~~ll~a~ 641 (835)
|..+-..-..+|
T Consensus 266 d~~v~~~a~~a~ 277 (280)
T PRK09687 266 DNEIITKAIDKL 277 (280)
T ss_pred ChhHHHHHHHHH
Confidence 555444333333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.91 E-value=8.5 Score=31.52 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCC
Q 043955 617 EAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 617 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
.++.-+-.|.+-|++.+..+-|.|||.-+|+..|.+.++-+-..-..+.+.|-.+ ..+++-.+.+.|+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~------------lqeikp~l~ELGI 95 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI------------LQEIKPTLKELGI 95 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH------------HHHHhHHHHHHCC
Confidence 3333344457889999999999999999999999999997664433344444333 2456667777776
Q ss_pred c
Q 043955 697 K 697 (835)
Q Consensus 697 ~ 697 (835)
.
T Consensus 96 ~ 96 (103)
T cd00923 96 S 96 (103)
T ss_pred C
Confidence 3
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.65 E-value=54 Score=32.58 Aligned_cols=178 Identities=11% Similarity=0.033 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH--HHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQTKDL------ILWTSMINANGLHGRGKVAIDLFYKMEAE-SFAPDH--ITFL 567 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~Pd~--~t~~ 567 (835)
...|+--++- .+.|++++|.+.|+.+..+.+ -+--.++-++-+.|++++|+..+++.... +-.||. +.|.
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445444433 367999999999999986422 23444566777899999999999998874 233332 4454
Q ss_pred HHHHHhccc----CcHHHHHH---HHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHH
Q 043955 568 ALLYACSHS----GLINEGKK---FLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVW--CALL 638 (835)
Q Consensus 568 ~ll~a~~~~----g~~~~a~~---~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~--~~ll 638 (835)
..|+-+... .+...+.+ -|+....+| |+. .--.+|..-+... -|.... .+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~---~d~LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKL---NDALAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHH---HHHHHHHHHHHH
Confidence 444422211 22222333 333333333 211 1111111111110 000000 1122
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCCC---chHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNPG---NYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
.-+...|...-|..=++.+++--|+-+. .+..|.+.|...|..++|.+..+-+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3355667777777777777777665444 3566677888888888888888877754
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.08 E-value=78 Score=34.02 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=107.6
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVD 404 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~ 404 (835)
-...|...++.-.+..-.+.|..+|-+..+.| +.++.+.+++++.-++ .++...|..+++.-++.-.++...-+..+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34567788888888888899999999999988 6778888888877654 577788888888877776666667777888
Q ss_pred HHHhcCChhhHHHHHHhcCCC---C--chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh
Q 043955 405 VYGKCGNIDYSRNVFESIESK---D--VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA 472 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~~---~--~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~ 472 (835)
.+...++-+.|+.+|+...++ + -..|..||.-=..-|+...+..+=++|.. +-|-..+...+++-+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 888999999999999855432 2 35688888877788888888877777765 455555554444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.19 E-value=2.3 Score=27.37 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=21.2
Q ss_pred HHHHHhCCCchhHHHHHHHHHHhcCChhhHH
Q 043955 386 GYIIRKGLSDLVILNAIVDVYGKCGNIDYSR 416 (835)
Q Consensus 386 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 416 (835)
...++..+.+..+++.|...|...|+.++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4455666666667777777777777777765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.16 E-value=1.2 Score=40.49 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=36.7
Q ss_pred hHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhh
Q 043955 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFN 521 (835)
Q Consensus 467 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 521 (835)
.++..+.+.+.++...++++.+.+.+-..+..+.+.|+.+|++.+..+...++++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4556666666667777777777766656667777778888877776666666665
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.13 E-value=65 Score=32.53 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=67.2
Q ss_pred ChhHHHHHHHHHh-hcCCHHHHHHHHHhC--CCCCC-------------HHHHHHHH----HHHhhcCchhHHHHHHHHH
Q 043955 598 WPEHYACLVDLLG-RANHLEEAYQFVRSM--QIEPT-------------AEVWCALL----GACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 598 ~~~~y~~lv~~l~-r~g~~~eA~~~~~~m--~~~p~-------------~~~~~~ll----~a~~~~~~~~~a~~~~~~~ 657 (835)
|+.-|-..+.-.. +.--++++.+++..- .+-|+ ..+|..|+ .+|...|+...|....+++
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3444444444332 233566777766655 12221 12344444 5688899999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 658 LELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 658 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
+.++|-+...+-.|-++|+..|+--+|.+-++.|.
T Consensus 306 ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 306 LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 99999999999999999999999888877777665
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.13 E-value=3 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPD 562 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd 562 (835)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466677777777888888888877776 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.05 E-value=7.3 Score=35.56 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=28.4
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+++.+.++.+..-+--+.|+.+..-..-++++...|+|.+|.++.+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555555555554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.03 E-value=37 Score=34.83 Aligned_cols=176 Identities=13% Similarity=0.131 Sum_probs=116.1
Q ss_pred hcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHH--HhcccCcHHH
Q 043955 509 RCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT--FLALLY--ACSHSGLINE 581 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t--~~~ll~--a~~~~g~~~~ 581 (835)
-.|+..+|-..++++.+ .|..+|+--=.+|...|+.+.-...+++.... -.||... |+.=+. ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46888888888888874 58999999999999999999999999998864 3566533 332222 3467899999
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhhcCchhHHHHH
Q 043955 582 GKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPT-------AEVWCALLGACRVHSNKELGEIV 653 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-------~~~~~~ll~a~~~~~~~~~a~~~ 653 (835)
|.+.-++.. .|+| |.-.--....++.-.|+..|+.+|+.+-.-.-+ .--|.+-+- +-..+.++.|+.+
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~-~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF-HIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh-hhcccchhHHHHH
Confidence 998877654 6677 343444566778889999999999987621111 112332221 1233678899988
Q ss_pred HHHHH--hcCCCCCCc---hHHHHHHHHhcCCchHHHHHHH
Q 043955 654 AKKLL--ELDPGNPGN---YVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 654 ~~~~~--~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+++-+ +++.+|+.+ |.-+--+....-.|.+-.++-+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~ 310 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLAD 310 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhh
Confidence 87643 556666533 2333445555555555444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=80.92 E-value=71 Score=32.78 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
.||.- ..+-+.+++++|.+.|+-..
T Consensus 249 LW~~~-~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 249 LWNKG-KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHH-HHHHhhcCHHHHHHHHHHHH
Confidence 35553 33446788888888887543
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.45 E-value=7.9 Score=39.15 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++..+..+....|+.+.++...+++++++|-+...|..|-..|...|+...|....+.+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3455667777888999999999999999999999999999999999999999999887775
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.23 E-value=2.5 Score=48.34 Aligned_cols=122 Identities=13% Similarity=0.215 Sum_probs=83.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
..++++.+.+.+.-.--| -++|.-+.+.|-.+-|+.+.+.=+..+ ++....|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 345666666554432212 133444567777777777765433333 44556899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 621 FVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 621 ~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
.-++. -|+.+|..|...-..+||.+.||..+++.-. +..||-+|.-.|+.++ ++|+|+-..++
T Consensus 665 ~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eK---L~Km~~iae~r 727 (1202)
T KOG0292|consen 665 AAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEK---LSKMMKIAEIR 727 (1202)
T ss_pred HHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHH---HHHHHHHHHhh
Confidence 98876 4677999999999999999999999997754 4567888888888765 45555543333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 7e-11
Identities = 86/524 (16%), Positives = 142/524 (27%), Gaps = 176/524 (33%)
Query: 1 MYGKCG-SVLDAEQLFDKVSQRT----VFTW---------NAML-----------GAYVS 35
+ G G + + + Q +F W +L + S
Sbjct: 158 VLG-SGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 36 NGE-----PLRVLETYSRMRVLGIS------------------VDAFTFPCVIKACAMLK 72
+ LR+ + +R L S +AF C
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--------- 266
Query: 73 DLDCGAKIHGLVLKCGYDSTDF-IVNSLVAMYAKCYDFRKARQLFDRMGEKEDV---VLW 128
KI L+ + + + L A E + + L
Sbjct: 267 ------KI--LLT-----TRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLD 312
Query: 129 NSIISAYSASGQCL--EA-------LGLFREMQRVGLVTN---AYTFVAALQACEDSSFE 176
Q L E L + E R GL T + L +SS
Sbjct: 313 CRP--------QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 177 TLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGF 236
L + L V+ +A I +L S+ W ++
Sbjct: 365 VLEPAEYRKMFDR---LSVFPPSAHI-----------PTILL-------SLIWFDVIKSD 403
Query: 237 VQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELH-----AYAIKQG 291
V + + + Q + ++ ++ ++ L N LH Y I +
Sbjct: 404 VMVVV----NKLHKYSLVEKQPKESTISIPSIYLELKV-KLENEYALHRSIVDHYNIPKT 458
Query: 292 FVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALE--- 348
F SD + +D Y FY I G+ HLK +E
Sbjct: 459 FDSD-DLIPPYLDQY------------FYS-----HI-------GH-----HLKNIEHPE 488
Query: 349 ---LFRTVQLEG--LDADVMIIGSVLMACSG-LKCMSQTKEIHGYIIRKGLSDLVILNAI 402
LFR V L+ L+ + + A L + Q K YI ++NAI
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 403 VDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEA 446
+D K N+ S + D++ M + EA
Sbjct: 549 LDFLPKIEE-----NLICS-KYTDLLRIALM---AEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 3e-08
Identities = 97/669 (14%), Positives = 188/669 (28%), Gaps = 184/669 (27%)
Query: 46 YSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVA---- 101
Y +L + DAF + + DC D D + L
Sbjct: 16 YQYKDILSVFEDAF-----------VDNFDC------------KDVQDMPKSILSKEEID 52
Query: 102 -MYAKCYDFRKARQLFDRMGEK-EDVV--------------LWNSIISAYSASGQCLEAL 145
+ +LF + K E++V L + I +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 146 GLFRE-MQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAM 204
R+ + V Y V+ LQ + L ++ +N+ + +
Sbjct: 113 IEQRDRLYNDNQVFAKY-NVSRLQP-----YLKL--RQALLELRPAKNVLID------GV 158
Query: 205 YARCGKMTEAAGVL----YQLENKDSVSW---------NSMLTGFVQNDLYCKAMQFFRE 251
GK A V Q + + W ++L + L + +
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTS 215
Query: 252 LQGAGQKPDQVCTVNAVSASGRLGNLLNGKEL-HAYAIKQGFVSDLQIGNTLMDMYAKCC 310
S L LL K + + + ++Q C
Sbjct: 216 RSDHSSNIKL----RIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAFNLSC- 266
Query: 311 CVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALEL-FRTVQLEGLDADVMIIGSVL 369
++ +T + T ++ + L + +++ L +
Sbjct: 267 ------KIL--LTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----LD 312
Query: 370 MACSGLKCMSQTKEIH-------GYIIRKGLS--------DLVILNAIVDVYGKCGNIDY 414
L + + IR GL+ + L I++
Sbjct: 313 CRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 415 SRNVFE--SIESKDV--------VSWTSMISSYVHNGLANEALELFYLMNEANVESDSIT 464
R +F+ S+ + W +I S V + N+ L + L+ + ES +I+
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV-VVNK-LHKYSLVEKQPKES-TIS 427
Query: 465 LVSALSAASSLSILKKGKE--------LNGFIIRKGFNLEGSVASSLVDMY--------- 507
+ S L + K + ++ + I K F+ + + L D Y
Sbjct: 428 IPSIY-----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHL 481
Query: 508 ---ARCGALDIANKV---FNCVQTKDLILWTSMINANGLHGRGKVAIDL-FYKMEAESFA 560
+ + V F ++ K + ++ NA+G L FYK
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASG--SILNTLQQLKFYK------- 531
Query: 561 PDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDL-LGRANH--LEE 617
+I Y L+N FL + + L Y L+ + L + EE
Sbjct: 532 -PYICDNDPKY----ERLVNAILDFL--PKIEENLICSK--YTDLLRIALMAEDEAIFEE 582
Query: 618 AYQFVRSMQ 626
A+ + +Q
Sbjct: 583 AH---KQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-07
Identities = 80/582 (13%), Positives = 179/582 (30%), Gaps = 196/582 (33%)
Query: 380 QTKEI-HGYIIRKGLSDL--VILNAIVDVYGKCGNI-DYSRNVFESIESKDVVSWTSMIS 435
+T E + Y D+ V +A VD + C ++ D +++ E ++ +
Sbjct: 10 ETGEHQYQY------KDILSVFEDAFVDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAV- 61
Query: 436 SYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELN-GFIIRKGFN 494
+ L LF+ + E + L +N F++
Sbjct: 62 --------SGTLRLFWTLLSKQEEMVQKFVEEVL-------------RINYKFLMSP-IK 99
Query: 495 LEGSVASSLVDMYARCGALDIANKVFNCVQ--TKDLI----LWTSMINA----------- 537
E S + MY ++++N Q K + + + A
Sbjct: 100 TEQRQPSMMTRMYIEQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 538 -NGLHGRGK--VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDY- 593
+G+ G GK VA+D+ + + I +L L S ++ +K L + ++
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 594 -QLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQI-----EPTAEVWCALLGACRV---- 643
+ D + + L ++ + + + + W A +C++
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKILLTT 272
Query: 644 --------------------HSNK-----ELGEIVAKKL--------LELDPGNPGNYVL 670
H + E+ ++ K L E+ NP
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----R 328
Query: 671 ISNVFAASRK--------WKDV--EQVRMRMRGS-------GLKKT-------PGSSWI- 705
++ A S + WK V +++ + S +K P S+ I
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 706 -----------------EIGNKIH--SFIARD---------------KSHSESD-EIYKK 730
+ NK+H S + + K E++ +++
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 731 LAE---ITEKLEREG-------GYVAQTQFV---LHNVEEEEKVQML------YGHSERL 771
+ + I + + + Y + L N+E E++ + + E+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFY--SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 772 AIAYGVLKSTEGSLIRITKNLR-----VCVDCHSFCKLVSRL 808
+ GS++ + L+ +C + + +LV+ +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 2e-08
Identities = 31/348 (8%), Positives = 82/348 (23%), Gaps = 58/348 (16%)
Query: 47 SRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKC 106
R S +++ LD G + + +
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 107 YDFRKARQLFDRM------GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNA 160
A L + + ++N+++ ++ G E + + ++ GL +
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 161 YTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQ 220
++ A + R + +
Sbjct: 201 LSY-----------------------------------AAALQCMGRQDQDAGTIERCLE 225
Query: 221 L-----ENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLG 275
++ +L+ + + + Q P V T +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 276 NLLNGKELHAYAIKQGFVSDLQI-----GNTLMDMYAKCCCVNYMGRVFYQMTAQDFISW 330
++ +LH + + Q+ + K + + + W
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW 345
Query: 331 TTIIAGYAQNNCHLKALELFRT-----VQLEGLDADVM--IIGSVLMA 371
+ + + E++ L LD + ++ VL A
Sbjct: 346 EKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQA 393
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 9/212 (4%)
Query: 429 SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFI 488
+ T + A L +A L L A L + +G
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 489 IRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK-------DLILWTSMINANGLH 541
+ + + + L +A+ + + L ++ +++
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 542 GRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEG-KKFLEIMRCDYQLDPWPE 600
G K + + + ++ PD +++ A L ++ LE M L
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQAL 237
Query: 601 HYACLVDLLGRANHLEEAYQFVRSMQIEPTAE 632
A L+ RA L+ ++ + + P
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 3e-06
Identities = 8/86 (9%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 394 SDLVILNAIVDVYGKCGNIDYSRNVFESIESK-------DVVSWTSMISSYVHNGLANEA 446
L A + + ++ + + + +++ + G E
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184
Query: 447 LELFYLMNEANVESDSITLVSALSAA 472
+ + +++ +A + D ++ +AL
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 1e-04
Identities = 11/126 (8%), Positives = 38/126 (30%), Gaps = 8/126 (6%)
Query: 2 YGKCGSVLDAEQLFDKVSQR-------TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGI 54
+ A L + T+ +NA++ + G ++ ++ G+
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196
Query: 55 SVDAFTFPCVIKACA-MLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKAR 113
+ D ++ ++ +D + + + G L++ + +
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256
Query: 114 QLFDRM 119
++
Sbjct: 257 KVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.5 bits (98), Expect = 6e-04
Identities = 18/171 (10%), Positives = 46/171 (26%), Gaps = 10/171 (5%)
Query: 147 LFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYA 206
L ++ LQ + ++ + Q A
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 207 RCGKMTEAAGVLYQLENK-------DSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKP 259
++ A +L + +N+++ G+ + + + + ++ AG P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 260 DQVCTVNAV-SASGRLGNLLNG-KELHAYAIKQGFVSDLQIGNTLMDMYAK 308
D + + A GR + ++G L+ +
Sbjct: 199 DLL-SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 3e-05
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 679 RKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738
RKW++ ++ R++ + K W E K + +E ++ +E EK
Sbjct: 88 RKWREEQRKRLQELDAASKVME-QEWREKAKK------------DLEEWNQRQSEQVEKN 134
Query: 739 EREGGYVAQTQFVLHNVEEE 758
+ +A F + +
Sbjct: 135 KINNR-IADKAF-YQQPDAD 152
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.6 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.58 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.38 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.34 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.33 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.31 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.28 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.28 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.26 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.24 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.21 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.15 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.15 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.13 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.11 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.03 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.02 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.01 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.97 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.87 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.84 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.75 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.67 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.61 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.55 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.54 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.52 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.49 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.47 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.44 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.43 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.4 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.4 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.4 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.38 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.36 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.31 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.3 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.29 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.28 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.19 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.18 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.17 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.15 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.14 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.13 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.12 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.11 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.09 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.07 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.06 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.06 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.04 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.03 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.02 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.0 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.96 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.96 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.92 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.9 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.87 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.84 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.84 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.8 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.77 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.73 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.67 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.63 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.6 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.54 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.46 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.44 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.43 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.37 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.36 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.18 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.05 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.86 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.75 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.72 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.69 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.66 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.62 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.14 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.27 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.51 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.25 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.0 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.84 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.25 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.46 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.76 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.34 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 87.16 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.98 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.58 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 85.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.44 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.35 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.93 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.28 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=393.00 Aligned_cols=500 Identities=9% Similarity=-0.065 Sum_probs=360.5
Q ss_pred HHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHH
Q 043955 102 MYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGME 181 (835)
Q Consensus 102 ~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 181 (835)
.+.++|.+..+...|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 45677888899999999987 7999999999999999999999999999985 56888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCC-------------------CcccHHHHHHHHHcCCCh
Q 043955 182 IHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENK-------------------DSVSWNSMLTGFVQNDLY 242 (835)
Q Consensus 182 l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------d~~~~~~li~~~~~~g~~ 242 (835)
++..+... .++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987543 678889999999999999999999999954433 478999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHH---HH-HHHHHHhCCCccccccchhhhhhhccCChhHHHHH
Q 043955 243 CKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGK---EL-HAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRV 318 (835)
Q Consensus 243 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~---~i-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 318 (835)
++|+++|++|... .|+..+....+..+.......... .+ +..+...+..+...+++.++.+|.++|++++|.++
T Consensus 217 ~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999999885 465544333333332222211111 11 34444445555667788899999999999999999
Q ss_pred HHhcCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCch
Q 043955 319 FYQMTA--QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDL 396 (835)
Q Consensus 319 f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~ 396 (835)
|+++.. +++.+|+.++.+|.+.|++++|+++|++|...+. .+..++..++.++...|+.+.+..++..+.+..+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 373 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH
Confidence 999987 7899999999999999999999999999987652 2555666666666666666666666666665555555
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhh
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIE---SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
.+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|...+
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------- 437 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------------- 437 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 555556666666666666666665543 1344555555555555555555555555554421
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
..+..+|+.++.+|.+.|++++|+++|++
T Consensus 438 ---------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 438 ---------------------------------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp ---------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12455566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhc---CCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043955 554 MEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCD---YQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QI 627 (835)
Q Consensus 554 m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 627 (835)
|.+.. +.+..+|..+...+.+.|++++|.++|+.+.+. .+..|+ ..+|.+++++|.+.|++++|.+.++++ ..
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66531 224556666666666666666666666666533 256776 788999999999999999999998887 44
Q ss_pred CC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q 043955 628 EP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA 677 (835)
Q Consensus 628 ~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 677 (835)
.| ++.+|..|..+|...|+.+.|...++++++++|+++..|..|+++|..
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 45 678999999999999999999999999999999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=390.75 Aligned_cols=478 Identities=10% Similarity=-0.048 Sum_probs=396.0
Q ss_pred HHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHH
Q 043955 204 MYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKEL 283 (835)
Q Consensus 204 ~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 283 (835)
.+.+.|....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|+++.|.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356678888889999999989999999999999999999999999999985 568889999999999999999999999
Q ss_pred HHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCC-------------------CcccHHHHHHHHHhcCChH
Q 043955 284 HAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ-------------------DFISWTTIIAGYAQNNCHL 344 (835)
Q Consensus 284 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~ 344 (835)
+..+... .++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987543 678889999999999999999999999965443 3789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHH----HHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHHH
Q 043955 345 KALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEI----HGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNVF 419 (835)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i----~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~f 419 (835)
+|+++|++|...+ |+..+....+..+...........+ +..+...+... ..+++.++.+|.++|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999864 5544433333332222211111111 22232223322 237778899999999999999999
Q ss_pred HhcCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCch
Q 043955 420 ESIES--KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEG 497 (835)
Q Consensus 420 ~~~~~--~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 497 (835)
+++.+ ++..+|+.++.+|.+.|++++|+++|++|...+ ..+..++..++.++...|++++|.+++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 799999999999999999999999999999865 3377889999999999999999999999998654 5578
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACS 574 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~ 574 (835)
.+++.++.+|.++|++++|.++|+++. ..++.+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 899999999999999999999999875 4578899999999999999999999999999852 346789999999999
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHhhc
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-------QIEPT--AEVWCALLGACRVH 644 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~a~~~~ 644 (835)
+.|++++|.++|+.+.+. .| ++..|.+++++|.+.|++++|.++++++ +..|+ ..+|..++.+|..+
T Consensus 453 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 999999999999999854 45 5889999999999999999999999988 55887 77999999999999
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+.+.|+..++++++++|+++..|..|+++|...|+|++|.+..+.+.+
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888776
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-27 Score=259.79 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhccc---------chhhHHHHHHHHHHhCCCCchh
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLS---------ILKKGKELNGFIIRKGFNLEGS 498 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~g~~~~~~ 498 (835)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4588899999999999999999999999999999999999999998754 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQ----TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACS 574 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~ 574 (835)
+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999987 47999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA 612 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 612 (835)
+.|++++|.++|+.|++. ++.|+..+|+.+++.+.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999865 9999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-23 Score=227.81 Aligned_cols=368 Identities=11% Similarity=0.096 Sum_probs=259.8
Q ss_pred HHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcC---CCCcccHHHHHHHHHhcCChHH
Q 043955 269 SASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMT---AQDFISWTTIIAGYAQNNCHLK 345 (835)
Q Consensus 269 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~ 345 (835)
..+.+.|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++... ..+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34556677777777776666553 2223344455556666666666666665543 2244556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCh-hHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 043955 346 ALELFRTVQLEGLDADV-MIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES 424 (835)
Q Consensus 346 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~ 424 (835)
|+..|+++... .|+. .++..+..++...|+++.|...+..+++..+....++..+...|...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666553 3333 24555555555566666666666666555555555555555555556666666655555432
Q ss_pred ---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHH
Q 043955 425 ---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVAS 501 (835)
Q Consensus 425 ---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 501 (835)
.+..+|+.+...|.+.|++++|+..|+++... .|+ +...+.
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~ 207 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN----------------------------------FLDAYI 207 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------------------cHHHHH
Confidence 23445555555555566666666655555542 222 344567
Q ss_pred HHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccC
Q 043955 502 SLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSG 577 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g 577 (835)
.+...|.+.|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcC
Confidence 77888889999999999988654 34678899999999999999999999999998 4565 467888888999999
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 578 LINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
++++|..+|+.+.+. .| +...|..++.++.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...+
T Consensus 286 ~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988743 45 5888999999999999999999999988 5556 4668999999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 655 KKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 655 ~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
+++++++|+++..|..++++|...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-26 Score=251.54 Aligned_cols=185 Identities=12% Similarity=0.142 Sum_probs=167.7
Q ss_pred chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCC---------chHHHHHHHHHHHhCCCCCcc
Q 043955 24 FTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKD---------LDCGAKIHGLVLKCGYDSTDF 94 (835)
Q Consensus 24 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---------~~~a~~i~~~~~~~g~~~~~~ 94 (835)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999987664 567899999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhc---CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 043955 95 IVNSLVAMYAKCYDFRKARQLFDRM---GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACE 171 (835)
Q Consensus 95 ~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 171 (835)
+||+||.+|++.|++++|.++|++| +..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998 4568999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 043955 172 DSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARC 208 (835)
Q Consensus 172 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 208 (835)
+.|+++.|.+++..|...|..|+..+++.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988888887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-23 Score=224.64 Aligned_cols=350 Identities=13% Similarity=0.073 Sum_probs=294.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCCh
Q 043955 334 IAGYAQNNCHLKALELFRTVQLEGLDADVMI-IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNI 412 (835)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~ 412 (835)
...+.+.|++++|+..+.++... .|+... +..+...+...++++.+...+..+++..+.+...+..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 44566778888888888887764 455443 344445567778888888888888888877777899999999999999
Q ss_pred hhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhh-hHhHHHHhhcccchhhHHHHHHHH
Q 043955 413 DYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSIT-LVSALSAASSLSILKKGKELNGFI 488 (835)
Q Consensus 413 ~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~ 488 (835)
++|...|+++.. | +..+|..+..+|.+.|++++|++.|+++... .|+..+ +..+-..+...|++++|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999988753 4 4557888999999999999999999998874 566554 445556677789999999999888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH
Q 043955 489 IRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HI 564 (835)
Q Consensus 489 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~ 564 (835)
++.. +.+...++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++... ..|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHH
Confidence 8764 3357788999999999999999999999876 34677899999999999999999999999998 5675 57
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIE-PTAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~a~ 641 (835)
++..+..++...|++++|...|+.+. .+.| ++..|..++.++.+.|++++|.+.++++ ... ++..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 78889999999999999999999988 4567 4788999999999999999999999988 333 4677999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...|+.+.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-24 Score=235.57 Aligned_cols=334 Identities=10% Similarity=0.027 Sum_probs=264.5
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDV 405 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~ 405 (835)
++..|..+...|.+.|++++|+.+|+++.... +.+..++..+..++...|+++.|...+..+++.++.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45667888888888888888888888887652 33556666777777777888888888888777777776788888888
Q ss_pred HHhcCChhhHHHHHHhcCCCC---c---hhHHHHHHH------------HHhCCChHHHHHHHHHHhhcCCcCChhhhHh
Q 043955 406 YGKCGNIDYSRNVFESIESKD---V---VSWTSMISS------------YVHNGLANEALELFYLMNEANVESDSITLVS 467 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~~~---~---~~~~~li~~------------~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ 467 (835)
|.+.|++++|.+.|+++.+.+ . ..|..++.. |.+.|++++|+..|+++... .|
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~------- 174 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CV------- 174 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT-------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC-------
Confidence 888888888888888776432 2 556655444 55666666666666666542 12
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh
Q 043955 468 ALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRG 544 (835)
Q Consensus 468 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 544 (835)
.+..++..++.+|.++|++++|.+.|+.+. ..+..+|+.++..|...|++
T Consensus 175 ---------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 175 ---------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred ---------------------------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 245667889999999999999999999876 35788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH-HHH------------HHHhcccCcHHHHHHHHHHhhhcCCCCCC-----hhHHHHHH
Q 043955 545 KVAIDLFYKMEAESFAPDHITF-LAL------------LYACSHSGLINEGKKFLEIMRCDYQLDPW-----PEHYACLV 606 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~Pd~~t~-~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv 606 (835)
++|+..|+++.. ..|+..+. ..+ ..+|.+.|++++|..+|+.+... .|+ ..+|.+++
T Consensus 228 ~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 228 ELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHH
Confidence 999999999997 56766543 333 68899999999999999999854 454 56899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH------------
Q 043955 607 DLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS------------ 672 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~------------ 672 (835)
+++.+.|++++|++.++++ ...| ++.+|..+..+|..+|+.+.|...++++++++|+++..+..|+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccch
Confidence 9999999999999999987 5556 5779999999999999999999999999999999999999999
Q ss_pred HHHHhcC--CchHHHHHHHHHHcCCCccCCc
Q 043955 673 NVFAASR--KWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 673 ~~y~~~g--~~~~a~~~~~~m~~~~~~k~~g 701 (835)
+.|...| +|.+..++++.+++..++..|.
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 6788888 5555566666666655555553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=214.03 Aligned_cols=388 Identities=10% Similarity=-0.045 Sum_probs=299.7
Q ss_pred ccchhhhhhhccCChhHHHHHHHhcC--CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 043955 298 IGNTLMDMYAKCCCVNYMGRVFYQMT--AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGL 375 (835)
Q Consensus 298 ~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 375 (835)
.+..+...|.+.|++++|...|+++. .|+...|..+...|.+.|++++|+..|+++.... +.+...+..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888774 3577778888888888888888888888887753 22345677777778888
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHH-----------------------------------
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFE----------------------------------- 420 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~----------------------------------- 420 (835)
|+++.|...+..+.+.++.+......++..+.+......+.+.+.
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 888888888888887776544433344433333222222211110
Q ss_pred ---hcC---------CC-CchhHHHHHHHHHh---CCChHHHHHHHHHHhh-----cCCcC--------ChhhhHhHHHH
Q 043955 421 ---SIE---------SK-DVVSWTSMISSYVH---NGLANEALELFYLMNE-----ANVES--------DSITLVSALSA 471 (835)
Q Consensus 421 ---~~~---------~~-~~~~~~~li~~~~~---~g~~~~Al~lf~~m~~-----~g~~p--------~~~t~~~ll~a 471 (835)
... .| +...|......+.. .|++++|+..|+++.. ..-.| +..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 000 01 13334444444444 8999999999999987 32222 23456677778
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 043955 472 ASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAI 548 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al 548 (835)
+...|+++.|..++..+++.... ..++..+...|.+.|++++|...|+.+.. .+...|..+...|...|++++|+
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 88999999999999999987655 88889999999999999999999997653 47789999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 043955 549 DLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM- 625 (835)
Q Consensus 549 ~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 625 (835)
..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++
T Consensus 325 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 325 KDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999984 454 467888889999999999999999988754 45 4788999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHhh---cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 626 ---QIEPT----AEVWCALLGACRV---HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 626 ---~~~p~----~~~~~~ll~a~~~---~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|-.|+ ..+|..+...+.. .|+.+.|...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33333 3488899999999 99999999999999999999999999999999999999999999877665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=210.70 Aligned_cols=270 Identities=10% Similarity=-0.067 Sum_probs=217.3
Q ss_pred HHHHHHHHHHh---cCChhhHHHHHHhcCC----------------C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcC
Q 043955 398 ILNAIVDVYGK---CGNIDYSRNVFESIES----------------K-DVVSWTSMISSYVHNGLANEALELFYLMNEAN 457 (835)
Q Consensus 398 ~~~~li~~y~k---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g 457 (835)
.+..+...+.. .|++++|...|+++.+ | +...|..+...|...|++++|+..|+++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 44444444443 7888888888876543 1 34567778888888899999999988888753
Q ss_pred CcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHH
Q 043955 458 VESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSM 534 (835)
Q Consensus 458 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~l 534 (835)
|+..++..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+... ..+...|..+
T Consensus 268 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 268 --PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp --CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred --ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 446667777778888888888888888887653 3356788899999999999999999998764 3477899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHH
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW----PEHYACLVDLL 609 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l 609 (835)
...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.....-.|. ...|..++.++
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999884 453 467888889999999999999999988754322232 34899999999
Q ss_pred hh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 610 GR---ANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 610 ~r---~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
.+ .|++++|.+.++++ ...| +..+|..+...+...|+.+.|...++++++++|+++..+..+.
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99 99999999999987 4445 5668889999999999999999999999999999887776663
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-16 Score=180.89 Aligned_cols=619 Identities=12% Similarity=0.081 Sum_probs=336.2
Q ss_pred cchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch-------
Q 043955 23 VFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFI------- 95 (835)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~------- 95 (835)
..-|..|++.+.+. +++.|.++-..+... .|....+..+...+...+.+.++..++-+..+.+-+.+..+
T Consensus 511 ~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~--~~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~ 587 (1630)
T 1xi4_A 511 TPDWIFLLRNVMRI-SPDQGQQFAQMLVQD--EEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEM 587 (1630)
T ss_pred CccHHHHHHHHhhc-ChHHHHHHHHHHhcC--CCCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHH
Confidence 34566777776644 477777766666554 22345566677777777777777777666666543322222
Q ss_pred ----------------------HHHHHHHHHhcCChHHHHHHHhhcCC-CC-----CeeeHHHHHHHHHhCCChhHHHHH
Q 043955 96 ----------------------VNSLVAMYAKCYDFRKARQLFDRMGE-KE-----DVVLWNSIISAYSASGQCLEALGL 147 (835)
Q Consensus 96 ----------------------~~~Li~~y~~~g~~~~A~~~f~~m~~-~~-----~~~~~n~li~~~~~~g~~~~A~~l 147 (835)
+..+...+-+.|-++.|++.++.+.. ++ ....=..|+..+. .=..+.+++.
T Consensus 588 Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg-~l~~~~s~~~ 666 (1630)
T 1xi4_A 588 NLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFG-SLSVEDSLEC 666 (1630)
T ss_pred hhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHh-cCCHHHHHHH
Confidence 33445556666777777776665411 11 1111222333333 3456677777
Q ss_pred HHHHHHCCCCCChhhHH-------------HHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 043955 148 FREMQRVGLVTNAYTFV-------------AALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEA 214 (835)
Q Consensus 148 ~~~m~~~g~~p~~~t~~-------------~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 214 (835)
+++|...+++-|-.... .++..+-+.+.++.---.++.++ .+..|+.+....|.+.++.|++.+.
T Consensus 667 l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~ev 744 (1630)
T 1xi4_A 667 LRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEV 744 (1630)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhh
Confidence 77777655443322222 22222222222222222222221 2455788889999999999999999
Q ss_pred HHHHhcCCC---------------CCcc----------------------cHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 043955 215 AGVLYQLEN---------------KDSV----------------------SWNSMLTGFVQNDLYCKAMQFFRELQGAGQ 257 (835)
Q Consensus 215 ~~~f~~~~~---------------~d~~----------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (835)
+++.++-.- +|.. .....|..|++.-++..+-.+...+.+.
T Consensus 745 eri~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~-- 822 (1630)
T 1xi4_A 745 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDV-- 822 (1630)
T ss_pred hHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcC--
Confidence 888766321 1111 0123345555544443333333333221
Q ss_pred CCCcch-------------HHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHH-------
Q 043955 258 KPDQVC-------------TVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGR------- 317 (835)
Q Consensus 258 ~p~~~t-------------~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~------- 317 (835)
.-+... ...++..+.+.+++......++.-+..| ..++.++|+|...|...++-.+..-
T Consensus 823 d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd 901 (1630)
T 1xi4_A 823 DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYD 901 (1630)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCccc
Confidence 112222 3333334444444444445555555555 4567788888888876543222200
Q ss_pred ---HHHhcCCCCccc----------HHHHHHHHHhcCChHH----------------HH--------HHHHHHHH----c
Q 043955 318 ---VFYQMTAQDFIS----------WTTIIAGYAQNNCHLK----------------AL--------ELFRTVQL----E 356 (835)
Q Consensus 318 ---~f~~m~~~~~~~----------~~~li~~~~~~g~~~~----------------A~--------~~~~~m~~----~ 356 (835)
+=+-..++|+.. -.-||....+++.+.. ++ .+.++-.. .
T Consensus 902 ~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e 981 (1630)
T 1xi4_A 902 SRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSE 981 (1630)
T ss_pred HHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhccc
Confidence 000001112110 1112222222222111 00 11111111 1
Q ss_pred CCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCC---CchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHH
Q 043955 357 GLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGL---SDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSM 433 (835)
Q Consensus 357 g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l 433 (835)
...|+. .+....++...|...++.++++.++..+. ++....+.|+.+..+. +.....+..++...-+ ...+
T Consensus 982 ~~~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eI 1055 (1630)
T 1xi4_A 982 TQDPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDI 1055 (1630)
T ss_pred ccCHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHH
Confidence 123333 34455666677777777777777774433 1233666666666666 3344444444443222 3345
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 043955 434 ISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGAL 513 (835)
Q Consensus 434 i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~ 513 (835)
...+.+.|.++||..+|++... + ......++. ..++++.|.++...+ .++.+|..+..++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~-~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----N-TSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----H-HHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 5667777788888887777521 1 111122222 455666666665543 2466677777777777777
Q ss_pred hhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------------------------CCCCHHHHH
Q 043955 514 DIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAES--------------------------FAPDHITFL 567 (835)
Q Consensus 514 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g--------------------------~~Pd~~t~~ 567 (835)
++|...|.+. .|...|..++..+.+.|++++|++.|...++.. -.|+...|.
T Consensus 1122 kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~ 1199 (1630)
T 1xi4_A 1122 KEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ 1199 (1630)
T ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH
Confidence 7777777553 566677777777777777777777776544422 123333444
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCch
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNK 647 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~ 647 (835)
.+...|...|++++|..+|... ..|..++..|.+.|++++|.+.+++. .+..+|.....+|...|++
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHH
Confidence 5556666666666666666643 35677777777777777777777665 3456777777777777777
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 648 ELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 648 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
.+|...... +..+ +..+..+++.|.+.|.|++|.++.+
T Consensus 1267 ~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1267 RLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777766653 3333 4457789999999999999999874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-19 Score=202.34 Aligned_cols=191 Identities=13% Similarity=0.050 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYAC 573 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~ 573 (835)
..+..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+..++
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 334444455555555555555555433 23445566666666666666666666666655 2333 24455555556
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhc
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVH 644 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~ 644 (835)
...|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ |-.++ ...+..+...+...
T Consensus 355 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666655532 34 2455555666666666666666665554 11111 11122233344444
Q ss_pred ----------CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 645 ----------SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 645 ----------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+.+.|...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666554443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-19 Score=196.76 Aligned_cols=302 Identities=10% Similarity=-0.014 Sum_probs=218.0
Q ss_pred hHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHh
Q 043955 363 MIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVH 439 (835)
Q Consensus 363 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 439 (835)
..+..+...+...|+++.|..++..+++..+.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|.+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34444445555555555565555555555555545555555555555665555555555432 234455555555555
Q ss_pred CCChHHHHHHHHHHhhcCCcCChh----hhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhh
Q 043955 440 NGLANEALELFYLMNEANVESDSI----TLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDI 515 (835)
Q Consensus 440 ~g~~~~Al~lf~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 515 (835)
.|++++|+..|+++.. ..|+.. .+..+...+.. ..+..+...|.+.|++++
T Consensus 107 ~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp TTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCHHH
Confidence 5556666555555554 223321 22222111110 012234556889999999
Q ss_pred HHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhc
Q 043955 516 ANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 516 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
|...|+.+. ..+...|..++..|...|++++|++.|+++.+. .+.+..++..+..++...|++++|..+|+.+.
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 238 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECL-- 238 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999999875 357889999999999999999999999999884 23356788999999999999999999999988
Q ss_pred CCCCCC-hhHHHHH------------HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCchhHHHHH
Q 043955 593 YQLDPW-PEHYACL------------VDLLGRANHLEEAYQFVRSM-QIEPT-----AEVWCALLGACRVHSNKELGEIV 653 (835)
Q Consensus 593 ~~i~p~-~~~y~~l------------v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~ 653 (835)
.+.|+ ...+..+ +.++.+.|++++|.+.++++ ...|+ ...|..+..++...|+.+.|+..
T Consensus 239 -~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 239 -KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp -HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44664 4445444 89999999999999999988 44454 34678888889999999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 654 AKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 654 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887775
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-15 Score=177.59 Aligned_cols=378 Identities=11% Similarity=0.068 Sum_probs=290.3
Q ss_pred HHHHHHHHhccCChHhHHHHHHHHHHhC--CCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcC
Q 043955 264 TVNAVSASGRLGNLLNGKELHAYAIKQG--FVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNN 341 (835)
Q Consensus 264 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 341 (835)
.....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +........++...-+ ...+...+.+.|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3556677778888888888888887332 123445566666666665 4455555555554222 455778888999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHh
Q 043955 342 CHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFES 421 (835)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 421 (835)
.+++|..+|++.. . .......++ ...++++.|.++...+ .+..+|..+..++.+.|++++|.+.|.+
T Consensus 1064 lyEEAf~IYkKa~----~-~~~A~~VLi---e~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD----V-NTSAVQVLI---EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred CHHHHHHHHHHcC----C-HHHHHHHHH---HHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999852 1 111112222 2667788888777644 4456999999999999999999999966
Q ss_pred cCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHH
Q 043955 422 IESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVAS 501 (835)
Q Consensus 422 ~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 501 (835)
. .|...|.-++..|.+.|++++|++.|...++.. +++...+.+..++++.+.++....+. + .++...+.
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 4 778888899999999999999999999877743 44444456888899998888644442 1 33455666
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINE 581 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 581 (835)
.+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -|..+|..+-.+|...|.+..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 7999999999999999999986 48999999999999999999999987 345889999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhc--CchhHHHHHHHHH
Q 043955 582 GKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVH--SNKELGEIVAKKL 657 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~--~~~~~a~~~~~~~ 657 (835)
|..+.. ++.-+++.+..++..|.+.|+++||+.+++.. .++|.. ..|.-|..++.++ +++..+.+.+..-
T Consensus 1269 A~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1269 AQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 998765 34456788889999999999999999999877 667644 3675555554444 6777778888888
Q ss_pred HhcCC-----CCCCchHHHHHHHHhcCCchHHHH
Q 043955 658 LELDP-----GNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 658 ~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
+.+.| +++-.|.-+.-+|...|.|+.|..
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88877 788889999999999999999985
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-18 Score=191.80 Aligned_cols=235 Identities=8% Similarity=-0.054 Sum_probs=172.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC 510 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 510 (835)
..+...+...|++++|+..|++.... .|+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 33444555556666666666666552 3444555555555566666666666666655543 23466778888999999
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHH
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFL 586 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~ 586 (835)
|++++|...|++.. ..+...|..+...|...|++++|++.|+++.+. .|+ ...+..+...+...|++++|..+|
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998765 346789999999999999999999999999984 455 457788888999999999999999
Q ss_pred HHhhhcCCCCC----ChhHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHH
Q 043955 587 EIMRCDYQLDP----WPEHYACLVDLLGRA----------NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 587 ~~m~~~~~i~p----~~~~y~~lv~~l~r~----------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a 650 (835)
+.+.+...-.+ ....+.....++.+. |++++|.+.++++ ...| +..+|..+...+...|+.+.|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 98764321111 223355567788888 9999999999987 4445 566899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHH
Q 043955 651 EIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~ 670 (835)
...+++++++.|+++.....
T Consensus 482 ~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 482 IELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHH
Confidence 99999999999987665443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-17 Score=174.18 Aligned_cols=312 Identities=8% Similarity=-0.026 Sum_probs=216.1
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 043955 327 FISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVY 406 (835)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y 406 (835)
+..|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|+++.|...+..+++..+.+..++..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456667777788888888888888777642 123445555555566666666666666666666655555666666666
Q ss_pred HhcCChhhHHHHHHhcCCCC------chhHHHH------------HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhH
Q 043955 407 GKCGNIDYSRNVFESIESKD------VVSWTSM------------ISSYVHNGLANEALELFYLMNEANVESDSITLVSA 468 (835)
Q Consensus 407 ~k~g~~~~A~~~f~~~~~~~------~~~~~~l------------i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~l 468 (835)
.+.|++++|...|++..+.+ ...|..+ ...+...|++++|++.|+++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------- 148 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE------------- 148 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------
Confidence 66666666666666654322 2223222 3445555555555555555544
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChH
Q 043955 469 LSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGK 545 (835)
Q Consensus 469 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 545 (835)
.. +.+..++..+...|.+.|++++|...|+.+.+ .+...|..+...|...|+++
T Consensus 149 ----------------------~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 149 ----------------------VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp ----------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred ----------------------hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 21 12345567778888888999999888887653 46778888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHH-HH------------HHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHh
Q 043955 546 VAIDLFYKMEAESFAPDHIT-FL------------ALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLG 610 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~ 610 (835)
+|+..|++..+ ..|+... +. .+...+...|++++|..+|+.+.+...-.|. ...|..++.++.
T Consensus 206 ~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999887 4555432 21 2355678889999999999888754322221 134667888899
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q 043955 611 RANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA 677 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 677 (835)
+.|++++|.+.+++. ...| ++.+|..+...+...|+.+.|...++++++++|+++..+..|..++..
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999999999998887 4455 566888888888899999999999999999999988888777776553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=169.38 Aligned_cols=302 Identities=10% Similarity=-0.027 Sum_probs=240.6
Q ss_pred hHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHh
Q 043955 363 MIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVH 439 (835)
Q Consensus 363 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 439 (835)
..+..+...+...|+++.|...+..+++..+.+..++..+...|...|++++|...|++..+ .+...|..+...|.+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34555666778889999999999999998888777888999999999999999999987753 356778888889999
Q ss_pred CCChHHHHHHHHHHhhcCCcC---ChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 440 NGLANEALELFYLMNEANVES---DSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 440 ~g~~~~Al~lf~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
.|++++|+..|++.... .| +.......+. .+.. ......+...|...|++++|
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~------~~~~----------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV------KADE----------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH------HHHH----------------HHHHHHHHHHHHHTTCHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHH------HHHH----------------HHHHHHHHHHHHHccCHHHH
Confidence 99999999999998873 45 2222111111 0100 11234456788999999999
Q ss_pred HHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhc
Q 043955 517 NKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 517 ~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
.+.|+.+. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|..+|+...+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999865 457789999999999999999999999999984 45 4567888889999999999999999988743
Q ss_pred CCCCCC-hhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHhhcCchhHHHHH
Q 043955 593 YQLDPW-PEHYA------------CLVDLLGRANHLEEAYQFVRSM-QIEPT-AE----VWCALLGACRVHSNKELGEIV 653 (835)
Q Consensus 593 ~~i~p~-~~~y~------------~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~----~~~~ll~a~~~~~~~~~a~~~ 653 (835)
.|+ ...+. .++..+.+.|++++|.+.++++ ...|+ +. .|..+..++...|+.+.|...
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 218 ---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 453 33222 3377899999999999999887 33443 32 344566788899999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 654 AKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 654 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887775
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-18 Score=178.44 Aligned_cols=322 Identities=11% Similarity=0.012 Sum_probs=166.7
Q ss_pred hccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHH
Q 043955 307 AKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHG 386 (835)
Q Consensus 307 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 386 (835)
-+.|++++|.++++++..++ +|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 999999999999999999999975 3688899999999999999999999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhH
Q 043955 387 YIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLV 466 (835)
Q Consensus 387 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~ 466 (835)
...+. .++..+.+.|+.+|.|+|+++++.++|+ .|+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 86 ~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 86 MARKK-ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 88885 4455689999999999999999998885 377789999999999999999999999987 4788
Q ss_pred hHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHH
Q 043955 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKV 546 (835)
Q Consensus 467 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 546 (835)
.+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999888877 378899999999999999999988887765 455555579999999999999
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC------ChhHHHHHHHHHhhcCCHHH
Q 043955 547 AIDLFYKMEAESFAPDH---ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP------WPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 547 Al~l~~~m~~~g~~Pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p------~~~~y~~lv~~l~r~g~~~e 617 (835)
|+.+++..+. ..|.. .|..+++.+-.+-|.+.+..+.|.+ ..++.| +..+|.-++-+|..-|.++.
T Consensus 226 ai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999885 44543 4666777777788888888888763 337777 37789999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 618 AYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 618 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
|...+-+-| |++.--..+.....+-.|.|.-.++..=.++-.|.
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 988776654 33222334555666677777777777766766664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-16 Score=165.64 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYA 572 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a 572 (835)
...+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|++..+ ..|+ ..++..+...
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVV 202 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Confidence 3345566666777777777777776654 23456677778888888888888888888877 3444 4567777778
Q ss_pred hcccCcHHHHHHHHHHhhhcCC-------CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQ-------LDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRV 643 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~-------i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 643 (835)
+...|++++|..+|+.+.+... .......|..++.++.+.|++++|.+.++++ ...| +..+|..+...+..
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 8888888888888877664321 1224678889999999999999999998887 3344 45688888889999
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH-hcCCc
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFA-ASRKW 681 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~ 681 (835)
.|+.+.|...++++++++|+++..+..|+.+|. ..|+-
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999884 44543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=172.26 Aligned_cols=221 Identities=12% Similarity=0.114 Sum_probs=70.5
Q ss_pred hcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHH
Q 043955 105 KCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHA 184 (835)
Q Consensus 105 ~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~ 184 (835)
+.|++++|.+++++++. | .+|..|..++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+.
T Consensus 15 ~~~~ld~A~~fae~~~~-~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67889999999999965 4 3899999999999999999999965 3677899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH
Q 043955 185 ATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCT 264 (835)
Q Consensus 185 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 264 (835)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 44577888999999999999998888864 67779999999999999999999999876 256
Q ss_pred HHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChH
Q 043955 265 VNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHL 344 (835)
Q Consensus 265 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 344 (835)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 66677777777666666666555 245556666666666666666655554433 22223334556666666666
Q ss_pred HHHHHHHHHHH
Q 043955 345 KALELFRTVQL 355 (835)
Q Consensus 345 ~A~~~~~~m~~ 355 (835)
+|+.+++....
T Consensus 225 Eai~lLe~aL~ 235 (449)
T 1b89_A 225 ELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 66666665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=169.40 Aligned_cols=276 Identities=10% Similarity=-0.046 Sum_probs=211.8
Q ss_pred HhcCChhhHHH-HHHhcCC-----C--CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccch
Q 043955 407 GKCGNIDYSRN-VFESIES-----K--DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSIL 478 (835)
Q Consensus 407 ~k~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 478 (835)
.-.|++++|.. .|++... | +...|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34466777776 6664432 1 34567777788888888888888888887642 22445666667777778888
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHH---------------HHHHHHh
Q 043955 479 KKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTS---------------MINANGL 540 (835)
Q Consensus 479 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~---------------li~~~~~ 540 (835)
+.|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++.. .+...|.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888877764 33567788888899999999999999887653 22223321 1333448
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPD---HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLE 616 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~ 616 (835)
.|++++|+..|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.. +.| +...|..++.++.+.|+++
T Consensus 194 ~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 194 DSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHcCCHH
Confidence 8999999999999998 4555 67888899999999999999999998874 356 4789999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC-----------CCchHHHHHHHHhcCCchH
Q 043955 617 EAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN-----------PGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 617 eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~~ 683 (835)
+|.+.++++ ...| +..+|..+..++...|+.+.|...+++++++.|++ +..|..|+.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 4455 56789999999999999999999999999999988 7789999999999999999
Q ss_pred HHHHHH
Q 043955 684 VEQVRM 689 (835)
Q Consensus 684 a~~~~~ 689 (835)
|..+.+
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 998865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=159.16 Aligned_cols=260 Identities=11% Similarity=0.039 Sum_probs=199.0
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
++..+..+...+...|++++|+++|+++.... ..+...+..+...+...|+.+.+..++..+++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33344444555555555555555555555421 1122233334444455555555555555555432 224566778888
Q ss_pred HHHhcC-ChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHH
Q 043955 506 MYARCG-ALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLIN 580 (835)
Q Consensus 506 ~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~ 580 (835)
.|...| ++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+. .|+ ...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHH
Confidence 999999 99999999987653 46789999999999999999999999999984 454 456777888899999999
Q ss_pred HHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHhhcCchh
Q 043955 581 EGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI----------EPTAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~----------~p~~~~~~~ll~a~~~~~~~~ 648 (835)
+|..+|+... .+.| +...+..++.++.+.|++++|.+.++++ .. +.++.+|..+..++...|+.+
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999887 5567 4788999999999999999999999876 11 234568999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.|...++++++++|+++..+..++.+|...|++++|.+..+...
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-14 Score=163.08 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCC--C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-h
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQT--K-DL-ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYA-C 573 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~-~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a-~ 573 (835)
+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...+...... +
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHH
Confidence 44555556666666666666665442 2 32 47888888888888888888888888874 343 2223322222 2
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCc
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT--AEVWCALLGACRVHSN 646 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--~~~~~~ll~a~~~~~~ 646 (835)
...|+.++|+.+|+...+. .| ++..|..+++++.+.|+.++|..++++. |..|+ ..+|...+.....+|+
T Consensus 402 ~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3589999999999987744 46 4788899999999999999999999887 44453 4489999998999999
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 043955 647 KELGEIVAKKLLELDPGN 664 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~ 664 (835)
.+.+..+.+++.+..|++
T Consensus 479 ~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 479 LASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHCchh
Confidence 999999999999999953
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-14 Score=159.77 Aligned_cols=388 Identities=10% Similarity=0.044 Sum_probs=248.7
Q ss_pred cccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-h
Q 043955 297 QIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA-C 372 (835)
Q Consensus 297 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~ 372 (835)
..|..++. +.+.|+++.|..+|+++... +...|...+..+.+.|++++|..+|++.+... |+...+...+.. .
T Consensus 14 ~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 14 DAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHH
Confidence 34444444 24445555555555555332 33446666666666666666666666665532 444333333321 1
Q ss_pred ccccCchHHHH----HHHHHHHh-CC--CchhHHHHHHHHHHh---------cCChhhHHHHHHhcCC-CCc---hhHHH
Q 043955 373 SGLKCMSQTKE----IHGYIIRK-GL--SDLVILNAIVDVYGK---------CGNIDYSRNVFESIES-KDV---VSWTS 432 (835)
Q Consensus 373 ~~~~~~~~~~~----i~~~~~~~-~~--~~~~~~~~li~~y~k---------~g~~~~A~~~f~~~~~-~~~---~~~~~ 432 (835)
...++.+.+++ ++..+++. |. .+..+|...+....+ .|+++.|+++|++... |+. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 22344444433 44444432 32 233366666665544 5677777777776543 211 23332
Q ss_pred HHHHH-------------HhCCChHHHHHHHHHH------hhcC---CcCCh--------hhhHhHHHHhhc----ccch
Q 043955 433 MISSY-------------VHNGLANEALELFYLM------NEAN---VESDS--------ITLVSALSAASS----LSIL 478 (835)
Q Consensus 433 li~~~-------------~~~g~~~~Al~lf~~m------~~~g---~~p~~--------~t~~~ll~a~~~----~~~~ 478 (835)
...-. .+.+++.+|..++.++ .... +.|+. ..|...+.-... .++.
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~ 250 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQ 250 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCS
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcc
Confidence 21110 1234567777777653 2211 23331 122222221111 1222
Q ss_pred ----hhHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCChh-------hHHHHhhhCCC---C-ChhHHHHHHH
Q 043955 479 ----KKGKELNGFIIRKGFNLEGSVASSLVDMYAR-------CGALD-------IANKVFNCVQT---K-DLILWTSMIN 536 (835)
Q Consensus 479 ----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~f~~~~~---~-~~~~~~~li~ 536 (835)
+.+..++..+++.. +.++.++..++..+.+ .|+++ +|+.+|++..+ | +...|..++.
T Consensus 251 ~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 251 TLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 25556777777652 3467788888888876 79987 89999997653 3 5789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHH-Hhhc
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDL-LGRA 612 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~-l~r~ 612 (835)
.+.+.|+.++|.++|+++++ +.|+. ..|...+..+.+.|.+++|+.+|+...+ ..|. ...|...+.+ +...
T Consensus 330 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHc
Confidence 99999999999999999998 67764 4688888888899999999999998874 3453 3444433333 3468
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC----chHHHHHHHHhcCCchHHHH
Q 043955 613 NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG----NYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~ 686 (835)
|+.++|.+++++. ...| ++.+|..++......|+.+.|+.+++++++..|.++. .|..........|+.+++.+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999977 3345 5779999999999999999999999999999887765 56666778888999999999
Q ss_pred HHHHHHc
Q 043955 687 VRMRMRG 693 (835)
Q Consensus 687 ~~~~m~~ 693 (835)
+.+.+.+
T Consensus 485 ~~~r~~~ 491 (530)
T 2ooe_A 485 VEKRRFT 491 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=157.55 Aligned_cols=242 Identities=8% Similarity=-0.029 Sum_probs=182.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchh
Q 043955 400 NAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479 (835)
Q Consensus 400 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 479 (835)
..+...|...|+++.|...++....|+..++..+...+...|+.++|++.|+++...+..|+.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----------------- 100 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----------------- 100 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-----------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-----------------
Confidence 334556666666666666665544445555666666666666677777777766655444543
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESF 559 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 559 (835)
..++..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+.
T Consensus 101 -----------------~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 101 -----------------TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -----------------HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 33456677888999999999999999 568889999999999999999999999999984
Q ss_pred CCCHHHH---HHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 043955 560 APDHITF---LALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEV 633 (835)
Q Consensus 560 ~Pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~ 633 (835)
.|+.... .+.+..+...|++++|..+|+.+.+. .| ++..|..++.++.+.|++++|++.++++ ...| ++.+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5775421 12233344669999999999999865 45 6888999999999999999999999987 5566 5668
Q ss_pred HHHHHHHHhhcCchhH-HHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHH
Q 043955 634 WCALLGACRVHSNKEL-GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~-a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
|..+...+...|+.+. +...++++++++|+++.. .+++.+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 9999988888888865 678999999999998654 345666666666543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-15 Score=162.02 Aligned_cols=264 Identities=11% Similarity=0.041 Sum_probs=168.7
Q ss_pred HHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHH
Q 043955 370 MACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEA 446 (835)
Q Consensus 370 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 446 (835)
..+...|+++.|...+..+++..+.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3333344444444444444444444445677777788888888888888876642 4667888888889999999999
Q ss_pred HHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-
Q 043955 447 LELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT- 525 (835)
Q Consensus 447 l~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~- 525 (835)
+..|+++... .|+.......+...... ..+ ......+...+ +.|++++|...|+++.+
T Consensus 152 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 152 CEILRDWLRY--TPAYAHLVTPAEEGAGG-----------------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp HHHHHHHHHT--STTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcCcHHHHHHHHHHhhh-----------------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHh
Confidence 9999988874 34433222111000000 000 00111222223 66777777777766541
Q ss_pred -C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-Ch
Q 043955 526 -K---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WP 599 (835)
Q Consensus 526 -~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~ 599 (835)
| +..+|..+...|...|++++|+..|+++.. ..|+ ..++..+...+...|++++|..+|+.+.+ +.| +.
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~ 285 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYI 285 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcH
Confidence 2 456777777777788888888888888776 3444 45677777777788888888888877763 345 46
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEP------------TAEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p------------~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
..|..++.++.+.|++++|.+.++++ .+.| ...+|..|..++...|+.+.|..+.++.++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 77778888888888888888877766 2222 156788888888888888888887776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-13 Score=155.71 Aligned_cols=351 Identities=9% Similarity=-0.051 Sum_probs=245.2
Q ss_pred cCChhHHHHHHHhcCC-CCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc----ccCch
Q 043955 309 CCCVNYMGRVFYQMTA-QDFISWTTIIAGYAQ----NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSG----LKCMS 379 (835)
Q Consensus 309 ~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~ 379 (835)
.++++.|...|++..+ .+...+..|...|.. .+++++|+..|++....| +...+..+-..+.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4555555555554432 244455555556665 666666666666666544 23333333334433 55666
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHh----cCChhhHHHHHHhcCC-CCchhHHHHHHHHHh----CCChHHHHHHH
Q 043955 380 QTKEIHGYIIRKGLSDLVILNAIVDVYGK----CGNIDYSRNVFESIES-KDVVSWTSMISSYVH----NGLANEALELF 450 (835)
Q Consensus 380 ~~~~i~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~Al~lf 450 (835)
.|...+....+.+ +......|..+|.. .++.++|.+.|++..+ .+..++..+...|.+ .+++++|++.|
T Consensus 133 ~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 133 ESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 6666666666654 23355666666666 6677777777776543 456667777777776 77788888888
Q ss_pred HHHhhcCCcCChhhhHhHHHHhhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChhhHHHHhhh
Q 043955 451 YLMNEANVESDSITLVSALSAASS----LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYAR----CGALDIANKVFNC 522 (835)
Q Consensus 451 ~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~ 522 (835)
++....| +...+..+-..+.. .++.+.|..++....+.| +......|..+|.+ .++.++|.+.|+.
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 8777654 33344444444433 567777777777776654 45566777788887 8999999999988
Q ss_pred CCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhhhcC
Q 043955 523 VQT-KDLILWTSMINANGLH-----GRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG---LINEGKKFLEIMRCDY 593 (835)
Q Consensus 523 ~~~-~~~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~ 593 (835)
..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|+...+.
T Consensus 285 a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 285 SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 764 4677888888888877 89999999999999864 3445556666666656 789999999987743
Q ss_pred CCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCchhHHHHHHHHHHhcCCC--
Q 043955 594 QLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSMQIEPTAEVWCALLGACRV----HSNKELGEIVAKKLLELDPG-- 663 (835)
Q Consensus 594 ~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~-- 663 (835)
.++..+..+..+|.. .+++++|.+.+++.--..++..|..|...+.. .+|.+.|...++++++.+|+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 357788889999988 89999999999987323467788888888877 89999999999999999954
Q ss_pred -CCCchHHHHHHHHh
Q 043955 664 -NPGNYVLISNVFAA 677 (835)
Q Consensus 664 -~~~~~~~l~~~y~~ 677 (835)
++.....|+.++..
T Consensus 438 ~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 438 GTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHhcCHh
Confidence 77777778777764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=162.51 Aligned_cols=255 Identities=10% Similarity=-0.071 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..|..+...+.+.|++++|+.+|+++.... +.+..++..+...+...|+++.|...+..+++.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554421 1123344444444445555555555555544432 22355677778888
Q ss_pred HhcCChhhHHHHhhhCCCC---C----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 043955 508 ARCGALDIANKVFNCVQTK---D----------LILWTSMINANGLHGRGKVAIDLFYKMEAESFAP---DHITFLALLY 571 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~~~---~----------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P---d~~t~~~ll~ 571 (835)
.+.|++++|...|+++.+. + ...++.+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHH
Confidence 8888888888888776532 1 223445588889999999999999999984 45 4678888889
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~ 648 (835)
.+...|++++|..+|+.+.+ +.| +...|..++.+|.+.|++++|++.++++ ...| ++.+|..+..++...|+.+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT---VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999998874 356 5788999999999999999999999887 4556 4678999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------------CCchHHHHHHHHhcCCchHHHHHHH
Q 043955 649 LGEIVAKKLLELDPGN------------PGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~------------~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
.|...+++++++.|++ ...|..|+.+|...|+.+.+.++.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999873 5668899999999999999887754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=181.27 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=111.4
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHhhhCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 043955 493 FNLEGSVASSLVDMYARCGALDIANKVFNCVQ-------TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT 565 (835)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t 565 (835)
...-..++|+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33345689999999999999999999997653 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCc-HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 043955 566 FLALLYACSHSGL-INEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQF 621 (835)
Q Consensus 566 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 621 (835)
|+++|.++++.|. .++|.++|+.|... |+.||..+|+|+++...|.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999987 57899999999877 9999999999999888877655555444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-17 Score=182.82 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=108.2
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhh---cCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNE---ANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSL 503 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~---~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 503 (835)
.++||+||.+|++.|+.++|.++|.+|.+ .|+.||.+|| |+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY-----------------------------------NtL 171 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY-----------------------------------NAV 171 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH-----------------------------------HHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH-----------------------------------HHH
Confidence 36899999999999999999999988764 4566666655 555
Q ss_pred HHHHHhcCChhhHHHHhhhCC----CCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc
Q 043955 504 VDMYARCGALDIANKVFNCVQ----TKDLILWTSMINANGLHGRG-KVAIDLFYKMEAESFAPDHITFLALLYACSHSGL 578 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 578 (835)
|++|++.|++++|.++|++|. .||++|||+||.++++.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+.
T Consensus 172 I~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v 251 (1134)
T 3spa_A 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251 (1134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH
Confidence 556666666666666666664 46777888888888888874 6889999999999999999999999987776655
Q ss_pred HHHHHHHHHHhhhcCCCCC----ChhHHHHHHHHHhhcC
Q 043955 579 INEGKKFLEIMRCDYQLDP----WPEHYACLVDLLGRAN 613 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p----~~~~y~~lv~~l~r~g 613 (835)
++...++ ..+|...| ...+-.-|.|+|.+.|
T Consensus 252 L~~Vrkv----~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 252 LKAVHKV----KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHGGG----CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHh----CcccCCCCCCcccccchHHHHHHHccCC
Confidence 5544443 33333332 2344455788888776
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=149.36 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=187.4
Q ss_pred HHHhcCChhhHHHHHHhcCCCCc----hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhh
Q 043955 405 VYGKCGNIDYSRNVFESIESKDV----VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKK 480 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 480 (835)
-....|++..|...++.....++ ...-.+..+|...|++++|+..++.. .
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~--------------------- 61 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----S--------------------- 61 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----S---------------------
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----C---------------------
Confidence 34456777777777776654332 23344566777777777777654321 1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 481 GKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ----TK-DLILWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 481 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
.|+......+...|.+.|+.++|.+.|+++. .| +...|..+...|.+.|++++|++.|++
T Consensus 62 -------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 62 -------------APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp -------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred -------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 2234455677888999999999999998763 24 567788888999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChh---HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCC
Q 043955 556 AESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE---HYACLVDLLGRANHLEEAYQFVRSM-Q-IEPT 630 (835)
Q Consensus 556 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~---~y~~lv~~l~r~g~~~eA~~~~~~m-~-~~p~ 630 (835)
.++...+..+...+...|++++|.+.|+.+.+. .|+.. ...+++.++...|++++|++.++++ . .+++
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 355677888888999999999999999999854 46532 2234556666779999999999998 2 3347
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH-HHHHHHHHHc
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD-VEQVRMRMRG 693 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~ 693 (835)
+.+|+.+..++...|+.+.|+..++++++++|+++.++..++.++...|++++ +.+.++.+.+
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999987 4677766654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-14 Score=156.21 Aligned_cols=360 Identities=12% Similarity=0.017 Sum_probs=201.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCC-ChhHHHHHHHHhccccCchHHHHHHHHHHHhC--------
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLE-------GLDA-DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKG-------- 392 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~-------- 392 (835)
.||.|...+...|++++|++.|++..+. ...| ...+|..+-.++...|+++.|...+..+.+..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3455555555555555555555543321 0112 12344555555555555555555555444321
Q ss_pred CCchhHHHHHHHHHHhcC--ChhhHHHHHHhcCC--C-CchhHHHHHHH---HHhCCChHHHHHHHHHHhhcCCcCCh-h
Q 043955 393 LSDLVILNAIVDVYGKCG--NIDYSRNVFESIES--K-DVVSWTSMISS---YVHNGLANEALELFYLMNEANVESDS-I 463 (835)
Q Consensus 393 ~~~~~~~~~li~~y~k~g--~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~Al~lf~~m~~~g~~p~~-~ 463 (835)
+....++..+...+.+.| ++++|...|++..+ | ++..+..+... +...++.++|++.|++... +.|+. .
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~--l~p~~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LNPDNQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH--HCSSCHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--cCCcchH
Confidence 011224444444444433 46677777766542 3 33344444333 2345666677777776665 23433 2
Q ss_pred hhHhHHHHhh----cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHH
Q 043955 464 TLVSALSAAS----SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMIN 536 (835)
Q Consensus 464 t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~ 536 (835)
++..+...+. ..++.+.+.+++..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 2322222222 2356667777776666553 2345667778888888888888888887655 234556666665
Q ss_pred HHHhc-------------------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC
Q 043955 537 ANGLH-------------------GRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLD 596 (835)
Q Consensus 537 ~~~~~-------------------g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 596 (835)
.|... +..++|+..|++..+ ..|+. .++..+...+...|++++|..+|+.... +.
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~ 364 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS---KE 364 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cC
Confidence 55332 235778888888877 45554 4677788889999999999999988763 34
Q ss_pred CChh----HHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 597 PWPE----HYACLVDL-LGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 597 p~~~----~y~~lv~~-l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
|+.. .+..+..+ +...|+.++|++.+++. .+.|+...+... .+.++..+++.++.+|+++.+|..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4322 23334433 45789999999998877 677776554333 344567788899999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEE
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWI 705 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i 705 (835)
|+.+|...|++++|.+..++.-+.+-.-....+|+
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999887766554332334554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=155.00 Aligned_cols=266 Identities=12% Similarity=0.006 Sum_probs=175.0
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDV 405 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~ 405 (835)
+...|..+...+.+.|++++|+..|+++... .+.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----------------------------------~p~~~~~~~~lg~~ 108 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ-----------------------------------DPGDAEAWQFLGIT 108 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------------------CcCCHHHHHHHHHH
Confidence 4455777777777777777777777776653 23334467777888
Q ss_pred HHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHH
Q 043955 406 YGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGK 482 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 482 (835)
|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..|+++... .|+.......+.
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~------------ 174 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK------------ 174 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-----------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhc------------
Confidence 8888888888888887653 45678888888999999999999999998873 343322111000
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 483 ELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--K---DLILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 483 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
....++..+...|.+.|++++|.+.|+++.+ | +..+|..+...|...|++++|++.|+++.+.
T Consensus 175 ------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 175 ------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1122334455666667777777777765542 2 4667777777777777777777777777763
Q ss_pred CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----
Q 043955 558 SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP----- 629 (835)
Q Consensus 558 g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p----- 629 (835)
.|+ ..++..+..++...|++++|..+|+.+.+ +.|+ ...|..++.+|.+.|++++|.+.++++ .+.|
T Consensus 243 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 243 --RPEDYSLWNRLGATLANGDRSEEAVEAYTRALE---IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 443 45677777777777777777777777663 3563 677777778888888888887777766 1111
Q ss_pred --------CHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 043955 630 --------TAEVWCALLGACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 630 --------~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 657 (835)
+..+|..|..++...|+.+.++.+.++.
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 2457888888888888888877776653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=151.92 Aligned_cols=251 Identities=13% Similarity=0.011 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
.+..+...+.+.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++... .|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~-------------- 86 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DP-------------- 86 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Cc--------------
Confidence 344455555555566655555555432 23445555555555555555555555555542 12
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHH--------------HH-
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSM--------------IN- 536 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l--------------i~- 536 (835)
.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+ ..
T Consensus 87 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 87 --------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 2344556666777777777777777766542 223333333 22
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH 614 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~ 614 (835)
.+...|++++|++.|+++.+. .| +..++..+...+...|++++|..+|+.+.+ +.| +...+..++.++.+.|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCC
Confidence 377889999999999999884 44 567788888899999999999999998874 356 47889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC------------CCCchHHHHHHHHhcCC
Q 043955 615 LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG------------NPGNYVLISNVFAASRK 680 (835)
Q Consensus 615 ~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~ 680 (835)
+++|.+.++++ ...| +..+|..+...+...|+.+.|...+++++++.|+ ++..+..++.+|...|+
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99999999887 4445 5678999999999999999999999999999999 78889999999999999
Q ss_pred chHHHHHHH
Q 043955 681 WKDVEQVRM 689 (835)
Q Consensus 681 ~~~a~~~~~ 689 (835)
+++|.++.+
T Consensus 302 ~~~A~~~~~ 310 (327)
T 3cv0_A 302 PDLVELTYA 310 (327)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-12 Score=144.68 Aligned_cols=352 Identities=12% Similarity=-0.029 Sum_probs=285.7
Q ss_pred CCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc----ccCchHHHHHHHHHHHhCCCc
Q 043955 324 AQDFISWTTIIAGYAQ----NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSG----LKCMSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 324 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~~~~i~~~~~~~~~~~ 395 (835)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.+ +
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C
Confidence 3466677777777887 899999999999998864 44455556566666 889999999999998876 4
Q ss_pred hhHHHHHHHHHHh----cCChhhHHHHHHhcCCC-CchhHHHHHHHHHh----CCChHHHHHHHHHHhhcCCcCChhhhH
Q 043955 396 LVILNAIVDVYGK----CGNIDYSRNVFESIESK-DVVSWTSMISSYVH----NGLANEALELFYLMNEANVESDSITLV 466 (835)
Q Consensus 396 ~~~~~~li~~y~k----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~Al~lf~~m~~~g~~p~~~t~~ 466 (835)
......|..+|.. .++.++|...|++..+. ++.++..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4567778889988 88999999999987654 66778888888887 789999999999998865 455555
Q ss_pred hHHHHhhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChhhHHHHhhhCCC-CChhHHHHHHHH
Q 043955 467 SALSAASS----LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYAR----CGALDIANKVFNCVQT-KDLILWTSMINA 537 (835)
Q Consensus 467 ~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~ 537 (835)
.+-..+.. .++.++|..++....+.| ++.....|..+|.. .++.++|.+.|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555 789999999999998876 56778889999987 8899999999998664 467788888888
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-----CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 043955 538 NGL----HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHS-----GLINEGKKFLEIMRCDYQLDPWPEHYACLVDL 608 (835)
Q Consensus 538 ~~~----~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 608 (835)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998764 344555666666666 8999999999987643 2 45677888888
Q ss_pred HhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh----
Q 043955 609 LGRAN---HLEEAYQFVRSMQIEPTAEVWCALLGACRV----HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA---- 677 (835)
Q Consensus 609 l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 677 (835)
|.+.| ++++|.+.+++.--..++..|..|...+.. .+|.+.|...++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 889999999988323577888889888887 799999999999999864 57889999999998
Q ss_pred cCCchHHHHHHHHHHcCC
Q 043955 678 SRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 678 ~g~~~~a~~~~~~m~~~~ 695 (835)
.++.++|.+..++..+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999988777654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-13 Score=144.57 Aligned_cols=274 Identities=11% Similarity=-0.010 Sum_probs=160.5
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDV 405 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~ 405 (835)
+...|..+...+.+.|++++|+.+|+++.... +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~ 64 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-----------------------------------PEREEAWRSLGLT 64 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHHH
Confidence 45567777777888888888888887776542 2233355556666
Q ss_pred HHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHH-HHhhcccchhhH
Q 043955 406 YGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSAL-SAASSLSILKKG 481 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a 481 (835)
|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+++... .|+.......+ ..+
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~--------- 133 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQAD--------- 133 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC-----------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH---------
Confidence 7777777777777776542 35567777788888888888888888888763 34433322222 000
Q ss_pred HHHHHHHHHhCCCCchhHHHHH-HH-HHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 482 KELNGFIIRKGFNLEGSVASSL-VD-MYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 482 ~~i~~~~~~~g~~~~~~~~~~l-i~-~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
++......+ .. .|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+
T Consensus 134 -------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 134 -------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp -------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000000111 11 1344455555555554433 22455566666666666666666666666665
Q ss_pred CCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---
Q 043955 557 ESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT--- 630 (835)
Q Consensus 557 ~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--- 630 (835)
. .|+ ..++..+...+...|++++|..+|+.+.+ +.| +...+..++.++.+.|++++|.+.++++ ...|+
T Consensus 201 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 275 (327)
T 3cv0_A 201 L--RPDDAQLWNKLGATLANGNRPQEALDAYNRALD---INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred h--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc
Confidence 2 333 34555666666666666666666666553 234 3556666666666777777777666655 22232
Q ss_pred ----------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 631 ----------AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 631 ----------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..+|..+..++...|+.+.|...++++++..|+
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred ccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 446666777777777777777777766665554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-13 Score=149.66 Aligned_cols=380 Identities=8% Similarity=-0.077 Sum_probs=224.4
Q ss_pred cchHHHHHHHHhccCChHhHHHHHHHHHHh-----CC--Cc-cccccchhhhhhhccCChhHHHHHHHhcCC-------C
Q 043955 261 QVCTVNAVSASGRLGNLLNGKELHAYAIKQ-----GF--VS-DLQIGNTLMDMYAKCCCVNYMGRVFYQMTA-------Q 325 (835)
Q Consensus 261 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~--~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~ 325 (835)
...|+.+-..+...|+.++|.+.+...++. +. .| ...+++.+...|...|++++|...|++... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888888888999999999999887653 11 12 234567788888889999999888776521 1
Q ss_pred ----CcccHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhH-HHHHHHH---hccccCchHHHHHHHHHHHhCCCc
Q 043955 326 ----DFISWTTIIAGYAQ--NNCHLKALELFRTVQLEGLDADVMI-IGSVLMA---CSGLKCMSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 326 ----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a---~~~~~~~~~~~~i~~~~~~~~~~~ 395 (835)
...+++.+..++.. .+++++|++.|++.... .|+... +..+..+ +...+..+.+.+.+..+++..+.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 22345544445544 34688999999888774 455433 2222222 345567778888888888888877
Q ss_pred hhHHHHHHHHHHh----cCChhhHHHHHHhcC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhH
Q 043955 396 LVILNAIVDVYGK----CGNIDYSRNVFESIE---SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSA 468 (835)
Q Consensus 396 ~~~~~~li~~y~k----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~l 468 (835)
..++..+...+.. .|+.++|.+.|++.. ..+...|+.+...|.+.|++++|+..|.+..+ ..|+......-
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE--YIPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCChHHHHHH
Confidence 6666666555544 456788888887654 34566788888889999999999999998877 35654332211
Q ss_pred HH-HhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh
Q 043955 469 LS-AASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRG 544 (835)
Q Consensus 469 l~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 544 (835)
+. .+... +... ... ....+.......+..+.|...|+... ..+..+|..+...|...|++
T Consensus 287 lg~~y~~~-----~~~~----~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAK-----VFQV----MNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHH-----HHHH----HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHH-----HHHh----hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 11 11110 0000 000 00011111112234567777777654 44677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 043955 545 KVAIDLFYKMEAESFAPDHI--TFLALLY-ACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQF 621 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~Pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 621 (835)
++|++.|++.++....|... .+..+.. ...+.|+.++|+..|+... .+.|+..... +.++.+.++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~---------~~~~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKE---------KMKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHH---------HHHHHHHHH
Confidence 99999999999854333321 2222222 3457899999999998776 5667532222 222333444
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 622 VRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 622 ~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
+++. ...| ++.+|..|..++...|+.+.|+..+++++++.|.+|.++.-++
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4433 2334 5668999999999999999999999999999999888765554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-14 Score=138.64 Aligned_cols=191 Identities=14% Similarity=0.048 Sum_probs=158.7
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLAL 569 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~l 569 (835)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|+.++|+..|++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 34666778889999999999999999997653 4678999999999999999999999999998 56765 567788
Q ss_pred HHHhccc-----------CcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 043955 570 LYACSHS-----------GLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCA 636 (835)
Q Consensus 570 l~a~~~~-----------g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ 636 (835)
..++... |++++|...|+... .+.| +...+..+..+|.+.|++++|++.++++ .+..++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAE---RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 99999999999887 4578 4888999999999999999999999987 22277889999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+..++...|+.+.|+..++++++++|+++..+..++.+|...|++++|.+..+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-13 Score=135.73 Aligned_cols=217 Identities=14% Similarity=0.014 Sum_probs=174.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..|..+...+...|++++|+..|++..... ++. .++..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~-----------------------------------~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDI-----------------------------------TYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCT-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccH-----------------------------------HHHHHHHHHH
Confidence 467777788888888888888888887654 333 3445566666
Q ss_pred HhcCChhhHHHHhhhCCC--C-C-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 043955 508 ARCGALDIANKVFNCVQT--K-D-------LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG 577 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~~--~-~-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 577 (835)
.+.|++++|...|+...+ | + ...|..+...|...|++++|+..|+++.. +.|+.. .+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHh
Confidence 677777777777765542 1 1 57888899999999999999999999988 567643 345668
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 578 LINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
++++|...++.+.. ..| +...|..++.++.+.|++++|.+.++++ ...| ++.+|..+...+...|+.+.|...+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999998873 466 4778889999999999999999999887 4444 5678999999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 655 KKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 655 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998776554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=136.27 Aligned_cols=238 Identities=10% Similarity=-0.031 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChh-hhHhHHHHhh
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIES--KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSI-TLVSALSAAS 473 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~-t~~~ll~a~~ 473 (835)
..+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..... |+.. .+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchH-------
Confidence 3788899999999999999999987632 678889999999999999999999999987632 2210 000
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
....++..+...|.+.|++++|...|++....+.. ...+...|+.++|+..+++
T Consensus 77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHH
Confidence 01344566777777888888888888766531111 2346667888899999998
Q ss_pred HHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 043955 554 MEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP- 629 (835)
Q Consensus 554 m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p- 629 (835)
+.. ..|+. ..+..+...+...|++++|..+|+.+.. +.| +...|..++.++.+.|++++|.+.++++ ...|
T Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 131 EAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 887 45654 4577777788889999999999988774 345 4788888999999999999999998887 4445
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcC------CCCCCchHHHHHH
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELD------PGNPGNYVLISNV 674 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~ 674 (835)
++.+|..+..++...|+.+.|...++++++++ |++...+..|+.+
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 46688888889999999999999999999999 7776666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=137.48 Aligned_cols=245 Identities=13% Similarity=0.016 Sum_probs=159.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
+.......|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++....+ ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~---------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA---------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH----------
Confidence 344566677778888888888877643 245577777777888888888888888777632 22211
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
....+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 11234556666667777777777776554 235567777777777777777777777
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCC---HHHHHHHHHhC-
Q 043955 552 YKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANH---LEEAYQFVRSM- 625 (835)
Q Consensus 552 ~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~---~~eA~~~~~~m- 625 (835)
++..+ ..|+.. .+..+...+...+++++|..+|+.+.+ +.|+ ...+..++.++...|+ +++|...++++
T Consensus 132 ~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 77766 355443 344444245555577788887777663 3453 5666667777776676 55566555554
Q ss_pred ---CCCCC------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 626 ---QIEPT------AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 626 ---~~~p~------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
.-.|+ ..+|..|...+...|+.+.|...++++++++|+++.++-.+..+....+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 11233 24677788888899999999999999999999998888877776655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-13 Score=141.25 Aligned_cols=240 Identities=8% Similarity=0.008 Sum_probs=186.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCC-hHHHHHHHHHHhhcCCcCChhhhHhHHHHhh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGL-ANEALELFYLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
+++.+...|.+.|++++|...|++... .+...|+.+...+.+.|+ +++|+..|++... +.|+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~P~------------ 164 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPK------------ 164 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HCCC------------
Confidence 566666777777777777777776643 355677777777777775 8888888877776 3343
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDL 550 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l 550 (835)
+..+++.+...|.+.|++++|...|+++. ..+...|..+..++...|++++|+..
T Consensus 165 ----------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 165 ----------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 34456777778888899999999998765 45788999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhcc-cCcHHHH-----HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC--CHHHHHH
Q 043955 551 FYKMEAESFAPDH-ITFLALLYACSH-SGLINEG-----KKFLEIMRCDYQLDP-WPEHYACLVDLLGRAN--HLEEAYQ 620 (835)
Q Consensus 551 ~~~m~~~g~~Pd~-~t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g--~~~eA~~ 620 (835)
|+++++ +.|+. ..|..+..++.. .|..++| +.+|+... .+.| +...|..+..+|.+.| ++++|++
T Consensus 223 ~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 223 VDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHH
Confidence 999998 56754 678888888888 6665777 47787776 4678 4788999999999988 6899999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHhhcC--------c-hhHHHHHHHHH-HhcCCCCCCchHHHHHHHHhc
Q 043955 621 FVRSMQIEPT-AEVWCALLGACRVHS--------N-KELGEIVAKKL-LELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 621 ~~~~m~~~p~-~~~~~~ll~a~~~~~--------~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 678 (835)
+++++...|+ ..++..|...+...| + .+.|..+++++ ++++|.....|..++..+...
T Consensus 298 ~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9988866664 557888888877663 3 58999999999 999999999998887766543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=134.00 Aligned_cols=212 Identities=13% Similarity=-0.051 Sum_probs=156.7
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh
Q 043955 468 ALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRG 544 (835)
Q Consensus 468 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 544 (835)
+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH
Confidence 3333334444444444444444332 2245567788888999999999999998765 34688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 545 KVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
++|+..|+++.+ ..|+.......+..+...|++++|..+|+...... .++...+ .++..+...+..++|.+.+++
T Consensus 128 ~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 128 KLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998 56776665556666677899999999998776442 2233444 477778888889999999988
Q ss_pred C-CCCCC-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 625 M-QIEPT-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 625 m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
+ ...|+ ..+|..+...+...|+.+.|...++++++++|++. ...+.++...|++++|.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 203 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC---HHHHHHHHHHHHHHHC----
T ss_pred HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 7 44342 46788888999999999999999999999999874 44577888889888886553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-12 Score=126.31 Aligned_cols=195 Identities=9% Similarity=-0.058 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYA 572 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a 572 (835)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4566778888999999999999998765 346788999999999999999999999999884 44 45677888888
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~ 649 (835)
+...|++++|..+|+.+.. .+..| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998875 34567 4778888999999999999999999887 4445 56788888889999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 650 GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
|...++++++..|+++..+..++.+|...|++++|.+..+.+.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-12 Score=137.65 Aligned_cols=224 Identities=8% Similarity=0.038 Sum_probs=189.3
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
+...|+.+...+.+.|++++|+..|++.+. +.|+. ..+++.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~----------------------------------~~a~~~~g~ 139 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAAN----------------------------------YTVWHFRRV 139 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTC----------------------------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccC----------------------------------HHHHHHHHH
Confidence 345688888889999999999999999887 45553 344677778
Q ss_pred HHHhcCC-hhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHH
Q 043955 506 MYARCGA-LDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLIN 580 (835)
Q Consensus 506 ~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~ 580 (835)
.|.+.|+ +++|...|+++. ..+...|+.+...|...|++++|+..|+++++ +.|+. ..|..+..++.+.|+++
T Consensus 140 ~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 140 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChH
Confidence 8888997 999999999876 45788999999999999999999999999998 67754 67888999999999999
Q ss_pred HHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhh-cCCHHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHhhcC--chhH
Q 043955 581 EGKKFLEIMRCDYQLDP-WPEHYACLVDLLGR-ANHLEEA-----YQFVRSM-QIEP-TAEVWCALLGACRVHS--NKEL 649 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r-~g~~~eA-----~~~~~~m-~~~p-~~~~~~~ll~a~~~~~--~~~~ 649 (835)
+|+.+|+.+. .+.| +...|..++.+|.+ .|+.++| ++.+++. .+.| +...|..+...+...| +.+.
T Consensus 218 eAl~~~~~al---~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 218 NELQYVDQLL---KEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp THHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHH
T ss_pred HHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHH
Confidence 9999999988 5678 58899999999999 7776777 4677666 5667 4669999999988887 6899
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHhcC---------CchHHHHHHHHH
Q 043955 650 GEIVAKKLLELDPGNPGNYVLISNVFAASR---------KWKDVEQVRMRM 691 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------~~~~a~~~~~~m 691 (835)
|...++++ +++|+++..+..|+++|...| ..++|.++.+.+
T Consensus 295 a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 295 LLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999985 258888888776
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=124.73 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=164.7
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDM 506 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 506 (835)
...|..+...|...|++++|+..|+++... .|+ +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC----------------------------------hHHHHHHHHHH
Confidence 456777888888899999999999888763 232 23345666777
Q ss_pred HHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHH
Q 043955 507 YARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEG 582 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a 582 (835)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+. ..+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888887654 346778888999999999999999999999875456654 5677788888999999999
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999988743 46 4788899999999999999999999887 4445 566788888888999999999999999999
Q ss_pred cCCCCCCchHH
Q 043955 660 LDPGNPGNYVL 670 (835)
Q Consensus 660 l~p~~~~~~~~ 670 (835)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998765443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=122.24 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=126.7
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDM 506 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 506 (835)
...|..+...|...|++++|++.|+++... .|+ +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------------------~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK----------------------------------NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc----------------------------------chHHHHHHHHH
Confidence 445666666677777777777777766652 222 12234445555
Q ss_pred HHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHH
Q 043955 507 YARCGALDIANKVFNCVQ---TKDLILWTSMINANGLH-GRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINE 581 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~ 581 (835)
|...|++++|.+.|+++. ..+...|..+...|... |++++|+..|+++.+.+..|+. ..+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 666666666666665543 23555666677777777 7777777777777663334443 455666666677777777
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 043955 582 GKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP--TAEVWCALLGACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 657 (835)
|..+|+.+.+ ..| +...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.+....+.+
T Consensus 132 A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 132 AEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 7777776653 234 3566666777777777777777776665 2222 3445555555566667777777777777
Q ss_pred HhcCCCCCCchHHH
Q 043955 658 LELDPGNPGNYVLI 671 (835)
Q Consensus 658 ~~l~p~~~~~~~~l 671 (835)
.+.+|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 77777766555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=122.00 Aligned_cols=195 Identities=9% Similarity=-0.010 Sum_probs=171.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~ 571 (835)
++.++..+...|...|++++|.+.|+.+. ..+...|..+...|...|+.++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 45677888999999999999999998765 346789999999999999999999999999984 45 4567888888
Q ss_pred Hhccc-CcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCch
Q 043955 572 ACSHS-GLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNK 647 (835)
Q Consensus 572 a~~~~-g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~ 647 (835)
.+... |++++|..+|+.+.+ .+..|+ ...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999886 345564 788899999999999999999999887 4445 467888999999999999
Q ss_pred hHHHHHHHHHHhcCC-CCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 648 ELGEIVAKKLLELDP-GNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 648 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.|...+++++++.| +++..+..++.+|...|+++++....+.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999888765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-12 Score=128.36 Aligned_cols=214 Identities=13% Similarity=0.031 Sum_probs=135.6
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
....|..+...+.+.|++++|+..|+++... .|+ +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHH
Confidence 3455666666677777777777777777652 222 1233444555
Q ss_pred HHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 043955 506 MYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEG 582 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 582 (835)
.|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 5666666666666666543 2356677777888888888888888888887742 23455677777778888888888
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...++++++
T Consensus 145 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 145 LPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888877633 44 4677888888888888888888888776 3334 466788888888888999999999999999
Q ss_pred cCCCCCCchHHHHHHHHhcC
Q 043955 660 LDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 660 l~p~~~~~~~~l~~~y~~~g 679 (835)
++|+++..+..++.+....|
T Consensus 222 ~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 222 IQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HCTTCHHHHHHHTC------
T ss_pred cCcchHHHHHHHHHHHhhcc
Confidence 99988888777766655433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-10 Score=125.37 Aligned_cols=351 Identities=10% Similarity=0.006 Sum_probs=208.4
Q ss_pred HHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCCh---hHHHHHHHhcCCCCcccHHHHHHHHHhcC----
Q 043955 269 SASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCV---NYMGRVFYQMTAQDFISWTTIIAGYAQNN---- 341 (835)
Q Consensus 269 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g---- 341 (835)
..+.+.|+++.|.+.+....+.| +...+..|-.+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 34445566667777776666665 445566677777778888 89999998887767778888877666665
Q ss_pred -ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCc---hHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChh----
Q 043955 342 -CHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCM---SQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNID---- 413 (835)
Q Consensus 342 -~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~---- 413 (835)
++++|+..|++....|... .+..+-..+...+.. ..+.+.+......|. ......|..+|...+.++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCcccCHH
Confidence 6789999999998876443 333333333333322 334444444444443 346667777887777544
Q ss_pred hHHHHHHhcCCCCchhHHHHHHHHHhCC---ChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH
Q 043955 414 YSRNVFESIESKDVVSWTSMISSYVHNG---LANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR 490 (835)
Q Consensus 414 ~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 490 (835)
.+..++......++.++..|...|.+.| +.++|++.|++....|. ++.
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a---------------------------- 213 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTA---------------------------- 213 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCH----------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHH----------------------------
Confidence 4455566666667778888888888888 88888888888877652 221
Q ss_pred hCCCCchhHHHHHHHHHHhc----CChhhHHHHhhhCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCH
Q 043955 491 KGFNLEGSVASSLVDMYARC----GALDIANKVFNCVQTKDLILWTSMINA-N--GLHGRGKVAIDLFYKMEAESFAPDH 563 (835)
Q Consensus 491 ~g~~~~~~~~~~li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~Al~l~~~m~~~g~~Pd~ 563 (835)
..+..|..+|... ++.++|.+.|+.....++..+..+... | ...|+.++|++.|++..+.| +.
T Consensus 214 -------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 214 -------QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp -------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred -------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 1223344445433 577788888877663466777777776 4 45788888999998888766 44
Q ss_pred HHHHHHHHHhcccC-----cHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHH
Q 043955 564 ITFLALLYACSHSG-----LINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSMQIEPTAEVW 634 (835)
Q Consensus 564 ~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~ 634 (835)
..+..+...+. .| +.++|..+|+... .-++..+..|..+|.. ..++++|.+.+++.--..++...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 45555555554 45 8888988888554 2256677777777765 34888999988887222233344
Q ss_pred HHHHHHHh----hcCchhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 043955 635 CALLGACR----VHSNKELGEIVAKKLLELDPGNPGNYVLISNV 674 (835)
Q Consensus 635 ~~ll~a~~----~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 674 (835)
..|...+. ..+|.+.|...++++.+..+.+ .-..+..+
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l 399 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQL 399 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHH
Confidence 44544444 2458888999998888876543 33444444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-12 Score=125.77 Aligned_cols=193 Identities=10% Similarity=0.066 Sum_probs=153.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~ 571 (835)
....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 455667788889999999999999998753 46789999999999999999999999999984 45 4567888888
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~ 648 (835)
.+...|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999988754 45 5788999999999999999999999887 4444 5778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|+..++++++..|+++..+..++.+|...|++++|.+..+...+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999887765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=143.03 Aligned_cols=188 Identities=8% Similarity=0.001 Sum_probs=167.8
Q ss_pred chhHHHHHHHHHHhcCCh-hhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGAL-DIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~ 571 (835)
+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++.++ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 566777888888899999 99999998765 34678999999999999999999999999998 5788888888999
Q ss_pred Hhccc---------CcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC---
Q 043955 572 ACSHS---------GLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRA--------NHLEEAYQFVRSM-QIEP--- 629 (835)
Q Consensus 572 a~~~~---------g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~--------g~~~eA~~~~~~m-~~~p--- 629 (835)
++... |++++|..+|+... .+.| +...|..++.+|.+. |++++|++.+++. .+.|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAV---QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 99999999999887 4567 488899999999999 9999999999988 5556
Q ss_pred -CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 630 -TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 630 -~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
++..|..+..++...|+.+.|...++++++++|+++..+..++.+|...|++++|.+..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67789999999999999999999999999999999999999999999999999998643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-11 Score=121.07 Aligned_cols=227 Identities=12% Similarity=0.052 Sum_probs=164.0
Q ss_pred ccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CCch----hHHHHHHHHHhCCChHHHHH
Q 043955 375 LKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--KDVV----SWTSMISSYVHNGLANEALE 448 (835)
Q Consensus 375 ~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~----~~~~li~~~~~~g~~~~Al~ 448 (835)
.|+++.|...+..+++..+.+..++..+...|...|++++|...|++..+ ++.. +|..+...|.+.|++++|+.
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 33333333334444444444444666777788888888888888887654 2222 37888889999999999999
Q ss_pred HHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---
Q 043955 449 LFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--- 525 (835)
Q Consensus 449 lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--- 525 (835)
.|++.... .|+ +..++..+...|.+.|++++|...|++..+
T Consensus 96 ~~~~a~~~--~~~----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 96 QYQAAVDR--DTT----------------------------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp HHHHHHHH--STT----------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred HHHHHHhc--Ccc----------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence 99998873 232 234567788889999999999999998774
Q ss_pred CChhHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCc---HHHHHHHHHHhhhcCCCCCC--
Q 043955 526 KDLILWTSMI-NANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGL---INEGKKFLEIMRCDYQLDPW-- 598 (835)
Q Consensus 526 ~~~~~~~~li-~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~i~p~-- 598 (835)
.+...|..+. ..| ..+++++|++.|+++.+ ..|+ ...+..+..++...|. .++|...|+...+...-.|+
T Consensus 140 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 140 TDPKVFYELGQAYY-YNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred CcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 3567788888 555 45699999999999998 5666 4566677777777787 88899988887755443454
Q ss_pred ----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 043955 599 ----PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGA 640 (835)
Q Consensus 599 ----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a 640 (835)
.+.|..++.++.+.|++++|.+.++++ .+.|+ +..+..+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 367888999999999999999999988 55664 4456555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-11 Score=122.20 Aligned_cols=188 Identities=13% Similarity=-0.052 Sum_probs=101.6
Q ss_pred HHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCC
Q 043955 365 IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNG 441 (835)
Q Consensus 365 ~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 441 (835)
+..+...+...|+++.|...+..+++..+.+..++..+...|...|++++|.+.|++..+ .+...|..+...|.+.|
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence 333344444445555555555555555555555677777777788888888877776643 35677777888888888
Q ss_pred ChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhh
Q 043955 442 LANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFN 521 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 521 (835)
++++|+..|+++.. ..|+.......+..+...|+++.|...+........ ++...+ .++..+...++.++|...+.
T Consensus 126 ~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHH
Confidence 88888888888876 345554443344444444555555555544444321 111111 23444444444444555444
Q ss_pred hCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 522 CVQTKD-------LILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 522 ~~~~~~-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
.....+ ...|..+...|...|+.++|+..|++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 443321 23344444444444444444444444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.4e-12 Score=135.92 Aligned_cols=255 Identities=13% Similarity=0.019 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---------CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---------KDVVSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVS 467 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ 467 (835)
++..+...|...|++++|...|++... .....|..+...|...|++++|+..|++....... ++...
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 125 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--- 125 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc---
Confidence 455666677777777777777665421 12345677777888888888888888877652110 11000
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC--------------------hhhHHHHhhhCCC--
Q 043955 468 ALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGA--------------------LDIANKVFNCVQT-- 525 (835)
Q Consensus 468 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~--------------------~~~A~~~f~~~~~-- 525 (835)
...++..+...|...|+ +++|.+.|++...
T Consensus 126 ----------------------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 126 ----------------------------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12234445555556666 5666555554321
Q ss_pred -----C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcC
Q 043955 526 -----K--DLILWTSMINANGLHGRGKVAIDLFYKMEAES-FAPD----HITFLALLYACSHSGLINEGKKFLEIMRCDY 593 (835)
Q Consensus 526 -----~--~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 593 (835)
+ ...+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..+|+......
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 23467888888888899999998888877521 0122 1367777788889999999999988765322
Q ss_pred ---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcC
Q 043955 594 ---QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELD 661 (835)
Q Consensus 594 ---~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 661 (835)
+-.+ ....+..++.++.+.|++++|.+.+++. +-.++ ..+|..+...+...|+.+.|...+++++++.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1111 1567888999999999999999988776 11222 4467788888899999999999999999885
Q ss_pred CC------CCCchHHHHHHHHhcCCchH
Q 043955 662 PG------NPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 662 p~------~~~~~~~l~~~y~~~g~~~~ 683 (835)
+. ....+..|+.+|...|+...
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 43 34567888888888887643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=116.01 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYAC 604 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~ 604 (835)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++.+.|++++|...+..... ..| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 344566666666666666666666666665 34543 3455555666666666666666665542 234 3455555
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
+...+...+++++|.+.+++. ...| +..+|..+...+...|+.+.|+..++++++++|+++..|..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 666666666666666666655 3334 34466666666666777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHH
Q 043955 683 DVEQVRMRMR 692 (835)
Q Consensus 683 ~a~~~~~~m~ 692 (835)
+|.+..++.-
T Consensus 159 ~A~~~~~~al 168 (184)
T 3vtx_A 159 EAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-10 Score=117.53 Aligned_cols=161 Identities=12% Similarity=-0.082 Sum_probs=108.4
Q ss_pred chhHHHHHHHHHHh----cCChhhHHHHhhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 043955 496 EGSVASSLVDMYAR----CGALDIANKVFNCVQT-KDLILWTSMINANGL----HGRGKVAIDLFYKMEAESFAPDHITF 566 (835)
Q Consensus 496 ~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~Pd~~t~ 566 (835)
++..+..|..+|.. .|++++|...|++..+ .+..+|..+...|.. .|+.++|++.|++..+.+ +...+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 34445556666666 7777777777766543 356677777777777 778888888888877754 34445
Q ss_pred HHHHHHhcc----cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 043955 567 LALLYACSH----SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSM-QIEPTAEVWCAL 637 (835)
Q Consensus 567 ~~ll~a~~~----~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~~~~~~~l 637 (835)
..+...+.. .++.++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++. ...| +..+..|
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l 224 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 555555655 77788888877766533 134566667777777 77888888777766 2223 5566666
Q ss_pred HHHHhh----cCchhHHHHHHHHHHhcCCCC
Q 043955 638 LGACRV----HSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 638 l~a~~~----~~~~~~a~~~~~~~~~l~p~~ 664 (835)
...+.. .++.+.|...++++++++|++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 666666 777788888888888777754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-11 Score=117.26 Aligned_cols=186 Identities=17% Similarity=-0.004 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
.+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~------------ 72 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRY------------ 72 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc------------
Confidence 455555555666666666666655432 23445555555555666666666666555542 2332
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-----------CChhhHHHHhhhCC---CCChhHHHHHHHHHHh
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC-----------GALDIANKVFNCVQ---TKDLILWTSMINANGL 540 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~-----------g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 540 (835)
...+..+...|.+. |++++|...|++.. ..+...|..+...|..
T Consensus 73 ----------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 73 ----------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 22233333334343 55666666555443 2244556666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
.|++++|+..|++.++.. .+...+..+..++...|++++|...|+... .+.| +...+..++.++.+.|++++|.
T Consensus 131 ~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKAL---EQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTC--------
T ss_pred cCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 666666666666665543 444555555555666666666666666554 2345 3555555666666666666666
Q ss_pred HHHHh
Q 043955 620 QFVRS 624 (835)
Q Consensus 620 ~~~~~ 624 (835)
+.+++
T Consensus 206 ~~~~~ 210 (217)
T 2pl2_A 206 RAAAL 210 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=143.09 Aligned_cols=160 Identities=17% Similarity=0.243 Sum_probs=127.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|...|+... .+.|+ .+.|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 456778888888888888888888888887 56764 567777888888888888888888776 45674 778888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
++.+|.+.|++++|++.+++. .+.|+ ...|..|..++...|+.+.|+..++++++++|+++.+|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888776 55664 5578888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 043955 683 DVEQVRMRM 691 (835)
Q Consensus 683 ~a~~~~~~m 691 (835)
+|.+..++.
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-11 Score=115.60 Aligned_cols=165 Identities=14% Similarity=0.059 Sum_probs=144.5
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~ 571 (835)
++.+|..|...|.+.|++++|.+.|++.. +.++.+|..+...|.+.|++++|+..+++... ..|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 56788999999999999999999999865 35788999999999999999999999999988 4554 455667777
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~ 648 (835)
.+...++++++...+.... .+.| +...+..++.++.+.|++++|++.+++. ...| ++.+|..+..++...|+.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAI---ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999877 4467 4788999999999999999999999887 5556 5668999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043955 649 LGEIVAKKLLELDPGNP 665 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~ 665 (835)
.|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-10 Score=127.24 Aligned_cols=343 Identities=10% Similarity=-0.003 Sum_probs=196.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCc---hHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Q 043955 332 TIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCM---SQTKEIHGYIIRKGLSDLVILNAIVDVYGK 408 (835)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~li~~y~k 408 (835)
.+...+.+.|++++|+.+|++..+.|- |+.. ..+-..+...|+. ++|...+....+. +...+..|..++..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY-SEAQ--VGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-CTGG--GTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 356677888999999999999887763 2222 2222223345555 7777777777755 33355556664444
Q ss_pred cC-----ChhhHHHHHHhcCCC-CchhHHHHHHHHHhCCChHH---HHHHHHHHhhcCCcCChhhhHhHHHHhhcccchh
Q 043955 409 CG-----NIDYSRNVFESIESK-DVVSWTSMISSYVHNGLANE---ALELFYLMNEANVESDSITLVSALSAASSLSILK 479 (835)
Q Consensus 409 ~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 479 (835)
.| +.++|...|++..++ +...+..|...|...+..++ +++.+.+....|. ......+-..+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 44 567777777766543 45567777777776655433 4444444443332 233333444444445444
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---ChhhHHHHhhhCCC---CChhHHHHHHHHHHhc----CChHHHHH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCG---ALDIANKVFNCVQT---KDLILWTSMINANGLH----GRGKVAID 549 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~----g~~~~Al~ 549 (835)
..........+.-...++..+..|..+|.+.| +.++|.+.|....+ ++...+..+...|... ++.++|++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44433333333333444557777888888888 77788888876543 3334446676666544 57788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-h--cccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC-----CHHHHHHH
Q 043955 550 LFYKMEAESFAPDHITFLALLYA-C--SHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRAN-----HLEEAYQF 621 (835)
Q Consensus 550 l~~~m~~~g~~Pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g-----~~~eA~~~ 621 (835)
.|++.. .| .| ..+..+... + ...|+.++|..+|+...+. | ++..+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g-~~--~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG-YP--ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG-ST--HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC-CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 888876 32 22 233333333 2 4577888888888776532 2 4566666777776 45 88888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhh----cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh----cCCchHHHHHHHHHHc
Q 043955 622 VRSMQIEPTAEVWCALLGACRV----HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA----SRKWKDVEQVRMRMRG 693 (835)
Q Consensus 622 ~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~ 693 (835)
+++.- ..++..+..|...+.. ..|.+.|...++++.+ +.++.++..|+.+|.. ..+.++|..+.++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 88876 4456666666655544 2377888888888765 4567777888888874 4577777777777666
Q ss_pred CC
Q 043955 694 SG 695 (835)
Q Consensus 694 ~~ 695 (835)
.|
T Consensus 387 ~g 388 (452)
T 3e4b_A 387 QD 388 (452)
T ss_dssp TC
T ss_pred CC
Confidence 55
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=134.10 Aligned_cols=264 Identities=10% Similarity=-0.048 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC--CC-c----hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHH
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES--KD-V----VSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSAL 469 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~-~----~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll 469 (835)
.+..+...|...|++++|...|++..+ |+ . ..|..+...|...|++++|+..|++.....-. .+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------- 122 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR------- 122 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc-------
Confidence 444566677777777777777776543 22 2 35666667777777777777777776542100 000
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---------CChhHHHHHHHHHHh
Q 043955 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---------KDLILWTSMINANGL 540 (835)
Q Consensus 470 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~ 540 (835)
.....++..+...|...|++++|...|++..+ ....+|..+...|..
T Consensus 123 ------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 123 ------------------------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 01233455666667777777777777665432 123467777777777
Q ss_pred cCC-----------------hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC
Q 043955 541 HGR-----------------GKVAIDLFYKMEAE----SFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW 598 (835)
Q Consensus 541 ~g~-----------------~~~Al~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~ 598 (835)
.|+ +++|++.|++..+. +-.|.. .++..+...+...|++++|..+|+...+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 777 77777777776541 111222 35666777778888888888888766532211111
Q ss_pred ----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC-
Q 043955 599 ----PEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP- 665 (835)
Q Consensus 599 ----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~- 665 (835)
...|..++.+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+.+.|...+++++++.|+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 336777888888888888888887765 11111 34677777778888888888888888888765443
Q ss_pred -----CchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 666 -----GNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 666 -----~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
..|..++.+|...|++++|.+..+...
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 367888888888899888888776554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=131.57 Aligned_cols=265 Identities=14% Similarity=0.015 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC--C-C----chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHH
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES--K-D----VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALS 470 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~ 470 (835)
.+..+...+.+.|++++|...|++..+ | + ...|..+...|...|++++|+..|++......
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------ 78 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------------ 78 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH------------
Confidence 445556666667777777766665532 2 2 23455666666666777777766666543110
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHh
Q 043955 471 AASSLSILKKGKELNGFIIRKGFNL-EGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGL 540 (835)
Q Consensus 471 a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~ 540 (835)
+.+-.+ ...++..+...|...|++++|...|++..+ ++ ..+|..+...|..
T Consensus 79 -------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 79 -------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 001111 134566778888899999999988876552 22 3488899999999
Q ss_pred cCC--------------------hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC
Q 043955 541 HGR--------------------GKVAIDLFYKMEAE----SFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQL 595 (835)
Q Consensus 541 ~g~--------------------~~~Al~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 595 (835)
.|+ +++|++.|++.... +-.|.. .++..+...+...|++++|..+|+...+...-
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 999 99999999987652 112222 35777888899999999999999987643222
Q ss_pred CCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 596 DPW----PEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 596 ~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
.++ ...|..++.++.+.|++++|.+.+++. +-.++ ..+|..+...+...|+.+.|...+++++++.|.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 222 457889999999999999999998876 21222 446788888899999999999999999998765
Q ss_pred C------CCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 664 N------PGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 664 ~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
. +..+..++.+|...|++++|.+..+...+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 45788999999999999999998766543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-11 Score=127.09 Aligned_cols=264 Identities=14% Similarity=0.009 Sum_probs=177.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC--C-C----chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHH
Q 043955 399 LNAIVDVYGKCGNIDYSRNVFESIES--K-D----VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSA 471 (835)
Q Consensus 399 ~~~li~~y~k~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a 471 (835)
.......+...|++++|...|++..+ | + ...|..+...|...|++++|++.|++.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------------
Confidence 33445556666666666666665532 2 2 2345556666666666666666666654310
Q ss_pred hhcccchhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhc
Q 043955 472 ASSLSILKKGKELNGFIIRKGFN-LEGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLH 541 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~ 541 (835)
.+.+-. ....++..+...|...|++++|...|++..+ ++ ..+|..+...|...
T Consensus 74 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 74 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp -----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 001111 1134556677777888888888887776442 12 23777788888888
Q ss_pred CC--------------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC
Q 043955 542 GR--------------------GKVAIDLFYKMEAE----SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLD 596 (835)
Q Consensus 542 g~--------------------~~~Al~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 596 (835)
|+ +++|++.|++.... +..|. ..++..+...+...|++++|..+|+...+...-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 88 88888888876542 11222 2356677778888999999999988765332111
Q ss_pred C----ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 597 P----WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 597 p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
+ ....+..++.++.+.|++++|.+.+++. +-.++ ..++..+...+...|+.+.|...+++++++.|..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1 1347888899999999999999888776 21222 3467777788889999999999999999887654
Q ss_pred C------CchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 665 P------GNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 665 ~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
. ..+..++.+|...|++++|.+..+...+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3 3778899999999999999998876654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-10 Score=116.30 Aligned_cols=185 Identities=12% Similarity=0.071 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 479 KKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--K-DLI-LWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 479 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
+.|..++...++.-.+.+..++..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|+.++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555421223455778888889999999999999987664 3 344 8999999999999999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHHhc-ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 043955 555 EAESFAPD-HITFLALLYACS-HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QI 627 (835)
Q Consensus 555 ~~~g~~Pd-~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~ 627 (835)
.+. .|+ ...|........ ..|+.++|..+|+...+. .| +...|..+++++.+.|++++|..++++. ++
T Consensus 161 ~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 884 343 344544433322 379999999999988743 46 4788899999999999999999999887 24
Q ss_pred CCC--HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 628 EPT--AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 628 ~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.|+ ..+|..++.....+|+.+.|..++++++++.|+++...
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~ 278 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc
Confidence 653 56899999999999999999999999999999876443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.4e-10 Score=113.37 Aligned_cols=223 Identities=11% Similarity=-0.068 Sum_probs=183.8
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
+..++..+...|.+.|++++|+..|++..+. + +...+..|..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~----------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----K----------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T----------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C----------------------------------CHHHHHHHHH
Confidence 5567777778888888888888888887652 2 2233455667
Q ss_pred HHHh----cCChhhHHHHhhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-
Q 043955 506 MYAR----CGALDIANKVFNCVQT-KDLILWTSMINANGL----HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSH- 575 (835)
Q Consensus 506 ~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~- 575 (835)
+|.. .|++++|...|++..+ .+..+|..+...|.. .|+.++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 7777 8999999999987654 478899999999999 999999999999999865 66777788888888
Q ss_pred ---cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----c
Q 043955 576 ---SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSMQIEPTAEVWCALLGACRV----H 644 (835)
Q Consensus 576 ---~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~ 644 (835)
.|+.++|..+|+...+. + +...+..+..+|.+ .|++++|.+.+++.--..++..+..|...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999988753 2 46677888899988 99999999999987222356678888888888 8
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh----cCCchHHHHHHHHHHcCC
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAA----SRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 695 (835)
++.+.|...++++++.+| +..+..|+.+|.. .|++++|.+..++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999999999977 6788999999999 999999999988776644
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-08 Score=115.81 Aligned_cols=146 Identities=6% Similarity=-0.001 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCC---hhHHHHHHHHH
Q 043955 77 GAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQ---CLEALGLFREM 151 (835)
Q Consensus 77 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~---~~~A~~l~~~m 151 (835)
....++..+... +-|...|..++....+.+.++.++.+|+++ ..+.....|...+..-.+.|+ .+.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 344455555544 357889999999999999999999999988 332466789888888888888 99999999998
Q ss_pred HHCC-CCCChhhHHHHHHHhhcCCCh--------hHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------CCC
Q 043955 152 QRVG-LVTNAYTFVAALQACEDSSFE--------TLGMEIHAATVKS-GQ-NLQ-VYVANALIAMYAR---------CGK 210 (835)
Q Consensus 152 ~~~g-~~p~~~t~~~ll~a~~~~~~~--------~~a~~l~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~ 210 (835)
.... ..|+...+..-+.-..+.++. +...++|+.++.. |. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8754 237776666666554444332 3345677776653 66 553 4577777765443 234
Q ss_pred hhHHHHHHhcCCC
Q 043955 211 MTEAAGVLYQLEN 223 (835)
Q Consensus 211 ~~~A~~~f~~~~~ 223 (835)
++.++++|++...
T Consensus 210 ~~~~R~iy~raL~ 222 (679)
T 4e6h_A 210 VQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 5666777766553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=123.31 Aligned_cols=272 Identities=13% Similarity=0.028 Sum_probs=172.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhc
Q 043955 330 WTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKC 409 (835)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~ 409 (835)
+......+...|++++|+..|++..... |+.... ...++..+...|...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~-----------------------------~~~~~~~l~~~~~~~ 56 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT-----------------------------LSAIYSQLGNAYFYL 56 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH-----------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHH-----------------------------HHHHHHHHHHHHHHc
Confidence 4444556667777777777777766542 221100 012455666777777
Q ss_pred CChhhHHHHHHhcCC---------CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHHHHhhcccchh
Q 043955 410 GNIDYSRNVFESIES---------KDVVSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSALSAASSLSILK 479 (835)
Q Consensus 410 g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~ 479 (835)
|++++|...|++..+ .....|..+...|...|++++|+..|++....... ++...
T Consensus 57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------- 121 (338)
T 3ro2_A 57 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------- 121 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------
T ss_pred CCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH---------------
Confidence 777777777765432 12456777888888999999999998887652111 11110
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC--------------------hhhHHHHhhhCCC-------C--ChhH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGA--------------------LDIANKVFNCVQT-------K--DLIL 530 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~--------------------~~~A~~~f~~~~~-------~--~~~~ 530 (835)
...++..+...|...|+ +++|.+.|++... + ....
T Consensus 122 ----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (338)
T 3ro2_A 122 ----------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 01233344445555555 5555555544321 1 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcC---CCCC-ChhH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESF-APD----HITFLALLYACSHSGLINEGKKFLEIMRCDY---QLDP-WPEH 601 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p-~~~~ 601 (835)
|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+|+...... +-.+ ....
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 77777888888888888888888765210 111 1256677777888899999988888765322 1111 1567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+..++.++.+.|++++|.+.++++ +-.++ ..+|..+...+...|+.+.|...+++++++.|+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 788889999999999999888776 11122 336777888889999999999999999998775
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=126.17 Aligned_cols=272 Identities=13% Similarity=0.007 Sum_probs=179.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhc
Q 043955 330 WTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKC 409 (835)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~ 409 (835)
+..+...+...|++++|+..|++.... .|+.... ...++..+...|...
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~-----------------------------~~~~~~~lg~~~~~~ 99 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRT-----------------------------LSAIYSQLGNAYFYL 99 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH-----------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhH-----------------------------HHHHHHHHHHHHHHC
Confidence 344455666667777777777666654 2221100 002456667777777
Q ss_pred CChhhHHHHHHhcCC---------CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHHHHhhcccchh
Q 043955 410 GNIDYSRNVFESIES---------KDVVSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSALSAASSLSILK 479 (835)
Q Consensus 410 g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~ 479 (835)
|++++|...|++..+ .....|..+...|...|++++|+..|++....... .+..
T Consensus 100 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------- 163 (411)
T 4a1s_A 100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL---------------- 163 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------
T ss_pred CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH----------------
Confidence 887777777765532 13456777888889999999999998887652100 0100
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-----------------hhhHHHHhhhCCC-------C--ChhHHHH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGA-----------------LDIANKVFNCVQT-------K--DLILWTS 533 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~-----------------~~~A~~~f~~~~~-------~--~~~~~~~ 533 (835)
....++..+...|...|+ +++|.+.|++..+ + ...+|..
T Consensus 164 ---------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 228 (411)
T 4a1s_A 164 ---------------SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGN 228 (411)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 012234455555666666 6666666554321 1 2347788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCC---CCC-ChhHHHH
Q 043955 534 MINANGLHGRGKVAIDLFYKMEAESF-APD----HITFLALLYACSHSGLINEGKKFLEIMRCDYQ---LDP-WPEHYAC 604 (835)
Q Consensus 534 li~~~~~~g~~~~Al~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---i~p-~~~~y~~ 604 (835)
+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+|+....... -.+ ....+..
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888999999988888776210 112 12567778888899999999999987654321 111 2567888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QI---EPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
++.++.+.|++++|.+.+++. .+ .++ ..++..+...+...|+.+.|...+++++++.+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999998876 11 112 336777888899999999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=137.55 Aligned_cols=243 Identities=11% Similarity=0.121 Sum_probs=178.8
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~ 571 (835)
+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 36678899999999999999999999865 34678999999999999999999999999998 67875 67889999
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~ 648 (835)
++...|++++|.+.|+... .+.| +.+.|..++.+|.+.|++++|++.+++. .+.|+ ...|..|..++...|+.+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999887 5678 4899999999999999999999999987 66774 568999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------CCchHHHHHHHHhcCCchHHHHH------HHHHHcCCCccCCceeEEE---ECC-EEE
Q 043955 649 LGEIVAKKLLELDPGN------PGNYVLISNVFAASRKWKDVEQV------RMRMRGSGLKKTPGSSWIE---IGN-KIH 712 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~------~~~m~~~~~~k~~g~s~i~---~~~-~~~ 712 (835)
.|+..+++++++.|+. +..+...+..|.....++.+..- ........ +.|...... -++ -.-
T Consensus 163 ~A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~klrI 240 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLH--KPPYEHPKDLKLSDGRLRV 240 (723)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCCSSTTTTTCEEE
T ss_pred HHHHHHHHHHHhChhHHhhccCcccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhhccc--CccccCcccccccccccee
Confidence 9999999999887642 11222222223222222222211 11111111 111100000 011 235
Q ss_pred EEEeCC-CCCcCcHHHHHHHHHHHHHhHHhCCcc
Q 043955 713 SFIARD-KSHSESDEIYKKLAEITEKLEREGGYV 745 (835)
Q Consensus 713 ~f~~~d-~~hp~~~~i~~~l~~l~~~~~~~~~y~ 745 (835)
+|+++| +.||....+...++.+.+.-.+-.+|.
T Consensus 241 GyvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~ 274 (723)
T 4gyw_A 241 GYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA 274 (723)
T ss_dssp EEEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEE
T ss_pred eeechhhccCcHHHHHHHHHHHhccCceeEEEEE
Confidence 999999 889998888777777654321333453
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-08 Score=113.89 Aligned_cols=416 Identities=11% Similarity=0.004 Sum_probs=253.4
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCC---hHhHHHHHHHHHHhCC-Cccccc
Q 043955 224 KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQ-VCTVNAVSASGRLGN---LLNGKELHAYAIKQGF-VSDLQI 298 (835)
Q Consensus 224 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~---~~~a~~i~~~~~~~g~-~~~~~~ 298 (835)
.|..+|..++..+.+.+..+.+..+|+++... -|.. ..+..-+..-.+.++ .+.+.++|+..+.... .|++.+
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 37778888888888888888888888888764 3443 334455555556666 7777777777776541 355556
Q ss_pred cchhhhhhhccCCh--------hHHHHHHHhcC------CC-CcccHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 043955 299 GNTLMDMYAKCCCV--------NYMGRVFYQMT------AQ-DFISWTTIIAGYAQ---------NNCHLKALELFRTVQ 354 (835)
Q Consensus 299 ~~~Li~~y~~~g~~--------~~A~~~f~~m~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 354 (835)
|...+....+.++. +..+++|+... .+ +...|...+.-... +++.+.+..+|.+.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 66555544443332 22335555421 11 23456666554321 233455666666665
Q ss_pred HcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhc-----------C
Q 043955 355 LEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESI-----------E 423 (835)
Q Consensus 355 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~-----------~ 423 (835)
......-..+|.....-.... +...++.+... ....++.|+..+.++ +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e--------------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDV-NQLTARRHIGE--------------------LSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHH--------------------HHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhc-CcchHHHHHHH--------------------hhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 321111111221111100000 01111111111 011222333333221 1
Q ss_pred C----------C--C------chhHHHHHHHHHhCCC-------hHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccch
Q 043955 424 S----------K--D------VVSWTSMISSYVHNGL-------ANEALELFYLMNEANVESDSITLVSALSAASSLSIL 478 (835)
Q Consensus 424 ~----------~--~------~~~~~~li~~~~~~g~-------~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 478 (835)
. | + ...|...|.---+++. .+.+..+|++.+.. ..-+...|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 1 1345555544333321 23455678777764 222445555555556667888
Q ss_pred hhHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-------------C------------ChhHHH
Q 043955 479 KKGK-ELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-------------K------------DLILWT 532 (835)
Q Consensus 479 ~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-------------~------------~~~~~~ 532 (835)
+.+. .+++..++.. +.+..++-.++..+-+.|+++.|+++|+.+.. | ....|.
T Consensus 360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8896 9999998743 45677788899999999999999999997753 2 123699
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 043955 533 SMINANGLHGRGKVAIDLFYKMEAE-SF-APDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLG 610 (835)
Q Consensus 533 ~li~~~~~~g~~~~Al~l~~~m~~~-g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 610 (835)
..+....+.|..+.|.++|.+.++. +. .+......+.+.- ...++.+.|+.+|+...+.++- +...+...++.+.
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHH
Confidence 9998888999999999999999985 21 1222222222321 2245699999999988866432 3555678889999
Q ss_pred hcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 611 RANHLEEAYQFVRSM-QIEP----TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~~p----~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
..|+.+.|..++++. ...| ...+|..++.--..+|+.+.+..+.+++.+..|+++..
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 999999999999987 3333 23489999999999999999999999999999987543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-10 Score=111.65 Aligned_cols=175 Identities=11% Similarity=-0.067 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCC---C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQ---T-KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYA 572 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a 572 (835)
..+..+...|.+.|++++|...|+... . ++...|..+...|...|++++|++.|++..+ ..|+. ..+..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 444445555555566666655555433 1 4445555555555566666666666666555 34443 234455555
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCCC-h-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--H-HHHHHHHHH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDPW-P-------EHYACLVDLLGRANHLEEAYQFVRSM-QIEPT--A-EVWCALLGA 640 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~-------~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--~-~~~~~ll~a 640 (835)
+...|++++|...|+...+ +.|+ . ..|..+..++.+.|++++|++.++++ ...|+ . ..|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5556666666666655542 2332 2 34555555555666666666665554 44454 2 245555555
Q ss_pred HhhcCch---------------------------hHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q 043955 641 CRVHSNK---------------------------ELGEIVAKKLLELDPGNPGNYVLISNVFAA 677 (835)
Q Consensus 641 ~~~~~~~---------------------------~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 677 (835)
+...|+. +.|...++++++++|+++.....|+.+...
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 5444444 899999999999999998888888777543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-10 Score=111.22 Aligned_cols=153 Identities=11% Similarity=-0.019 Sum_probs=134.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 526 KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
.|+..|..+...|...|++++|+..|++.++....++...+..+..++...|++++|..+|+... .+.|+ ...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcchHHHHHH
Confidence 46788999999999999999999999999986433777788788889999999999999999887 56784 788999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-H-------HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC--CCCchHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPT-A-------EVWCALLGACRVHSNKELGEIVAKKLLELDPG--NPGNYVLISN 673 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~-------~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~ 673 (835)
++.++.+.|++++|++.+++. ...|+ + .+|..+...+...|+.+.|+..++++++++|+ ++..|..++.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999887 44453 4 45777888888999999999999999999999 9999999999
Q ss_pred HHHhcCCc
Q 043955 674 VFAASRKW 681 (835)
Q Consensus 674 ~y~~~g~~ 681 (835)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998887
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-09 Score=116.76 Aligned_cols=232 Identities=13% Similarity=0.018 Sum_probs=145.3
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC-----C----CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh
Q 043955 402 IVDVYGKCGNIDYSRNVFESIES-----K----DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA 472 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~ 472 (835)
....|...|++++|...|++... + ...+|..+...|...|++++|+..|.+....-...+. +
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--Y------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--T-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--c-------
Confidence 45556666777777766665532 1 1245566666666777777777666665541100000 0
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcCC
Q 043955 473 SSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHGR 543 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~ 543 (835)
......+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...|+
T Consensus 180 --------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 180 --------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 000123456677778888888888888776542 11 1367778888888888
Q ss_pred hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC--CC-ChhHHHHHHHHHhhcCC-
Q 043955 544 GKVAIDLFYKMEAE----SFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQL--DP-WPEHYACLVDLLGRANH- 614 (835)
Q Consensus 544 ~~~Al~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i--~p-~~~~y~~lv~~l~r~g~- 614 (835)
+++|++.|++..+. +..|+. .++..+...+...|++++|..+|+.......- .| ....+..+..++...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 88888888887762 232443 45777777788888888888888766532111 12 23345667777888887
Q ss_pred --HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 615 --LEEAYQFVRSMQIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 615 --~~eA~~~~~~m~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
+++|++++++.+..|+.. ++..|...+...|+.+.|...+++++++..
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 778888888775555433 555666667777777777777777766544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-09 Score=112.80 Aligned_cols=181 Identities=9% Similarity=0.089 Sum_probs=149.3
Q ss_pred hcCCh-------hhHHHHhhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcc
Q 043955 509 RCGAL-------DIANKVFNCVQT----KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI--TFLALLYACSH 575 (835)
Q Consensus 509 k~g~~-------~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~--t~~~ll~a~~~ 575 (835)
+.|++ ++|..+|++..+ .+...|..++..+...|+.++|.++|++.++ +.|+.. .|..+...+.+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHH
Confidence 45886 899999987543 3567999999999999999999999999998 677643 78888888999
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHh-hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLG-RANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGE 651 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~-r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~ 651 (835)
.|.+++|+.+|+... .+.| +...|...+.+.. ..|++++|.+.++++ ...| ++..|..++......|+.+.|+
T Consensus 147 ~~~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 147 AEGIKSGRMIFKKAR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHCHHHHHHHHHHHH---TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred hcCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999887 4455 4555655544433 379999999999987 3334 5679999999999999999999
Q ss_pred HHHHHHHhc---CCC-CCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 652 IVAKKLLEL---DPG-NPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 652 ~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
.+++++++. .|+ +...|..+++.+...|++++|..+.+.+.+.
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999995 554 5668888999999999999999998777653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-10 Score=124.97 Aligned_cols=176 Identities=10% Similarity=0.003 Sum_probs=154.1
Q ss_pred hhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHH
Q 043955 513 LDIANKVFNCVQ---TKDLILWTSMINANGLHGRG-KVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLE 587 (835)
Q Consensus 513 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (835)
+++|...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|..+|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555433 34778999999999999999 999999999998 5676 5678889999999999999999999
Q ss_pred HhhhcCCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc--------Cchh
Q 043955 588 IMRCDYQLDPWPEHYACLVDLLGRA---------NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH--------SNKE 648 (835)
Q Consensus 588 ~m~~~~~i~p~~~~y~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~--------~~~~ 648 (835)
... .+.|+...+..+..+|.+. |++++|++.+++. ...| +...|..|..++... |+.+
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887 6678888999999999999 9999999999987 5556 467899999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 649 LGEIVAKKLLELDP---GNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 649 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|+..++++++++| +++..|..++.+|...|++++|.+..+...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999876654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-10 Score=106.07 Aligned_cols=157 Identities=14% Similarity=-0.028 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACS 574 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~ 574 (835)
.+..+...|.+.|++++|...|+++.+ .+...|..+...|...|+.++|++.|+++.+. .| +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 344555555666666666666655543 23445555555555555555555555555542 22 2233444444444
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
..|++++|..+|+.+... .| .+..+|..+...+...|+.+.|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~-------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NP-------------------------------INFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CT-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---Cc-------------------------------HhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445555555555444322 22 23344444445555555555555555
Q ss_pred HHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 655 KKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 655 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
+++++..|+++..+..++.+|...|++++|.+..+..
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555555555555555554433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.6e-11 Score=123.46 Aligned_cols=50 Identities=8% Similarity=-0.059 Sum_probs=22.8
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
...+..+.+...++++.+..|.++..+..|+.+|...|++++|.+..+..
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ---CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344455555566666666666666666666666666666666655443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=118.35 Aligned_cols=202 Identities=15% Similarity=0.082 Sum_probs=160.6
Q ss_pred hhhhHhHHHHhhcccchhhHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---------
Q 043955 462 SITLVSALSAASSLSILKKGKELNGFIIRK-------GFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--------- 525 (835)
Q Consensus 462 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--------- 525 (835)
..++..+...+...|+++.|..++..+.+. .......++..+...|...|++++|...|++...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345667777888899999999999988874 3344567788899999999999999999987642
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcC---
Q 043955 526 --KDLILWTSMINANGLHGRGKVAIDLFYKMEAE------SFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDY--- 593 (835)
Q Consensus 526 --~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~------g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 593 (835)
....+|..+...|...|++++|+..|+++.+. +-.|+. ..+..+...+...|++++|..+|+.+....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 13467889999999999999999999999874 223443 457778888999999999999999876431
Q ss_pred --CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-------------------------------------------
Q 043955 594 --QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-Q------------------------------------------- 626 (835)
Q Consensus 594 --~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~------------------------------------------- 626 (835)
+..| ....+..++.++.+.|++++|.+.++++ .
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1134 3677889999999999999999988776 1
Q ss_pred ------CCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 627 ------IEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 627 ------~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..|+ ..+|..|..++...|+.+.|...+++++++.|+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 2243 347888889999999999999999999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-09 Score=102.73 Aligned_cols=170 Identities=16% Similarity=0.069 Sum_probs=125.1
Q ss_pred hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHH
Q 043955 463 ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANG 539 (835)
Q Consensus 463 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 539 (835)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556667788899999999998877643 3457788999999999999999999999765 346788999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 043955 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
..|++++|++.|+++... .+.+...+..+..++...|++++|..+|+.+.+. .|
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~---------------------- 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP---------------------- 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT----------------------
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc----------------------
Confidence 999999999999999884 2334556666667777777777777777766532 22
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 620 QFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 620 ~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.+..+|..+...+...|+.+.|...++++++++|+++...
T Consensus 142 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 142 ---------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 1234555555566666666666666666666666665443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=105.63 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=108.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRA 612 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~ 612 (835)
...+...|+.++|++.|++... ..|+. ..+..+...+...|++++|.++|+... .+.| +...|..++.++.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc
Confidence 3445556777778877777665 34543 345667777888888888888888776 4567 478888888999999
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHH-HHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 613 NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEI-VAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
|++++|++.+++. .+.| ++.+|..|...+...|+.+.|.. ..+++++++|+++..|.+.+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999888877 5667 46688888888888998876555 4699999999999999999999988885
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-08 Score=105.66 Aligned_cols=263 Identities=13% Similarity=0.000 Sum_probs=156.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcC----CCCch----hHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHH
Q 043955 399 LNAIVDVYGKCGNIDYSRNVFESIE----SKDVV----SWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSAL 469 (835)
Q Consensus 399 ~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~----~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll 469 (835)
...+...+...|++++|...+++.. ..+.. .++.+...|...|++++|...+++....... ++...
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 3344455556677777766665432 11211 3444455566666777776666665542110 01100
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC----------C-ChhHHHHHHHHH
Q 043955 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT----------K-DLILWTSMINAN 538 (835)
Q Consensus 470 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~ 538 (835)
.....+.+...|...|++++|...|++... + ....+..+...|
T Consensus 92 --------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 92 --------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp --------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 012234566667777777777777765431 1 123556677777
Q ss_pred HhcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHH----HHHHHH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFA--P--DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYA----CLVDLL 609 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~--P--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~----~lv~~l 609 (835)
...|++++|...+++.....-. | ...++..+...+...|++++|..+++.......-... ..... ..+.++
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 7888888888888887653211 1 1234566666777888888888888776533111111 11111 233456
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC------CchHHHHHHHHh
Q 043955 610 GRANHLEEAYQFVRSM-QIEPT-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP------GNYVLISNVFAA 677 (835)
Q Consensus 610 ~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~ 677 (835)
.+.|++++|.+.+++. ...|. ...+..+..++...|+.+.|...++++++..+... ..+..++.+|..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 6888888888888877 22221 22456666777778888888888888877654322 356778888999
Q ss_pred cCCchHHHHHHHHHH
Q 043955 678 SRKWKDVEQVRMRMR 692 (835)
Q Consensus 678 ~g~~~~a~~~~~~m~ 692 (835)
.|++++|....+...
T Consensus 306 ~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 306 AGRKSDAQRVLLDAL 320 (373)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 999999887765543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=117.03 Aligned_cols=289 Identities=7% Similarity=-0.019 Sum_probs=188.7
Q ss_pred hccccCchHHHHHHHHHHHhCC---Cch--hHHHHHHHHH--HhcCChhhHH-----------HHHHhcCC-C-CchhHH
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGL---SDL--VILNAIVDVY--GKCGNIDYSR-----------NVFESIES-K-DVVSWT 431 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~---~~~--~~~~~li~~y--~k~g~~~~A~-----------~~f~~~~~-~-~~~~~~ 431 (835)
+.+.++++.|..+...+.+... .+. .++-.++..- .-.+.++.+. +.|+.+.. + +...+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 4556777888887777765421 121 1333333321 1223333333 55555432 1 111111
Q ss_pred ------HHHHHHHhCCChHHHHHHHHHHhhcCC-cCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043955 432 ------SMISSYVHNGLANEALELFYLMNEANV-ESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLV 504 (835)
Q Consensus 432 ------~li~~~~~~g~~~~Al~lf~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 504 (835)
.....+...|++++|+..|++....-. .||... ...++..+.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~a~~~~~lg 150 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-------------------------------KAEFFFKMS 150 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH-------------------------------HHHHHHHHH
Confidence 133445667777777777777665211 122111 123556777
Q ss_pred HHHHhcCChhhHHHHhhhCCC-----C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQT-----K-----DLILWTSMINANGLHGRGKVAIDLFYKMEAESF-APDH----ITFLAL 569 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~-----~-----~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~Pd~----~t~~~l 569 (835)
..|...|++++|...|++..+ + ...+++.+...|...|++++|++.|++..+..- .+|. .++..+
T Consensus 151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 788888888888887776441 1 235788999999999999999999999876311 1222 467888
Q ss_pred HHHhcccCcHHHHHHHHHHhhhc---CCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-----CCCHH-HHHHHH
Q 043955 570 LYACSHSGLINEGKKFLEIMRCD---YQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI-----EPTAE-VWCALL 638 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~---~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-----~p~~~-~~~~ll 638 (835)
...+...|++++|..+|+....- .+..| ....+..++.++.+.|++++|.+.+++. .+ .|... .+..|.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999999999977642 12325 3678999999999999999999999876 11 22222 345566
Q ss_pred HHHhhcCc---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 639 GACRVHSN---KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 639 ~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
..+...|+ .+.|...+++. ...|.....+..|+.+|...|++++|.+..+...
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777788 67777777666 4445556678899999999999999999877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.9e-08 Score=103.01 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=139.8
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC-----CC----chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh
Q 043955 402 IVDVYGKCGNIDYSRNVFESIES-----KD----VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA 472 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~ 472 (835)
....+...|++++|...|++... +| ..++..+...|...|++++|+..+.+....- +...
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~~~~--------- 175 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY--QNHP--------- 175 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTST---------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH--HhCC---------
Confidence 34445556666666666655432 11 2345555556666666666666666554311 0000
Q ss_pred hcccchhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcC
Q 043955 473 SSLSILKKGKELNGFIIRKGFN-LEGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHG 542 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g 542 (835)
+.. ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|
T Consensus 176 -------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 176 -------------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 000 0133456777788888888888887765442 11 246777888888888
Q ss_pred ChHHHHHHHHHHHHC---CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC--CC-ChhHHHHHHHHHhhcCC-
Q 043955 543 RGKVAIDLFYKMEAE---SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQL--DP-WPEHYACLVDLLGRANH- 614 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~---g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i--~p-~~~~y~~lv~~l~r~g~- 614 (835)
++++|++.|++..+. ...|+ ..++..+..++.+.|+.++|..+++.......- .| ....+..+..++...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 888888888887761 01233 355667777888888888888888876643322 22 24456667777777777
Q ss_pred --HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhc
Q 043955 615 --LEEAYQFVRSMQIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 615 --~~eA~~~~~~m~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l 660 (835)
+++|++.+++.+..|+.. .+..|...+...|+.+.|...+++++++
T Consensus 317 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 317 RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788888887765444433 4555556666777777777777666544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-09 Score=107.08 Aligned_cols=164 Identities=9% Similarity=-0.062 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC------
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLH-GRGKVAIDLFYKMEAESFAPD------ 562 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~g~~Pd------ 562 (835)
+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++ +.|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHH
Confidence 445556666666666666666654432 11 34677788888885 888888888888776 2231
Q ss_pred -HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH---
Q 043955 563 -HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP-----EHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE--- 632 (835)
Q Consensus 563 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~--- 632 (835)
..++..+...+...|++++|..+|+.......-.+.. ..|..++.++...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356777778888888888888888776432111111 25677778888888888888888887 5555422
Q ss_pred ---HHHHHHHHHh--hcCchhHHHHHHHHHHhcCCCC
Q 043955 633 ---VWCALLGACR--VHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 633 ---~~~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.+..|+.++. ..++.+.|...++++++++|.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2344555554 3456777888888888888865
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-09 Score=107.00 Aligned_cols=221 Identities=13% Similarity=0.077 Sum_probs=153.0
Q ss_pred hcccchhhHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----------CChhHHHHH
Q 043955 473 SSLSILKKGKELNGFIIRK-------GFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----------KDLILWTSM 534 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~l 534 (835)
...|+++.|..++...++. ..+....++..+...|...|++++|...|++..+ ....+|+.+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766652 2223466788899999999999999999886541 134578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcC----C-CCC-ChhH
Q 043955 535 INANGLHGRGKVAIDLFYKMEAE------SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDY----Q-LDP-WPEH 601 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-i~p-~~~~ 601 (835)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+|+.+.+.. + -.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998873 11243 3567778888899999999999998876431 1 134 3677
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHhhcCch------hHHHHHHHHHHhcCCCC
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-Q---------IEPT-AEVWCALLGACRVHSNK------ELGEIVAKKLLELDPGN 664 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~---------~~p~-~~~~~~ll~a~~~~~~~------~~a~~~~~~~~~l~p~~ 664 (835)
+..++.++.+.|++++|.++++++ . ..|. ...|..+.......+.. ..+....+.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999888776 1 2332 22454444444333332 23333333333344566
Q ss_pred CCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 665 PGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..+..|+.+|...|++++|.+..+...+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999998876543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.8e-08 Score=97.87 Aligned_cols=187 Identities=12% Similarity=0.026 Sum_probs=117.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD----HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEH 601 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~ 601 (835)
+...+-.+...+.+.|++++|+..|+++++. .|+ ...+..+..++...|++++|...|+...+.+.-.|. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3444445555555556666666666655552 333 234445555555566666666666555544322232 344
Q ss_pred HHHHHHHHhh--------cCCHHHHHHHHHhC-CCCCC-HHH-----------------HHHHHHHHhhcCchhHHHHHH
Q 043955 602 YACLVDLLGR--------ANHLEEAYQFVRSM-QIEPT-AEV-----------------WCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 602 y~~lv~~l~r--------~g~~~eA~~~~~~m-~~~p~-~~~-----------------~~~ll~a~~~~~~~~~a~~~~ 654 (835)
+..++.++.+ .|++++|.+.+++. ...|+ ... +..+...+...|+.+.|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5555555555 56666666555554 12221 112 245567788899999999999
Q ss_pred HHHHhcCCCCC---CchHHHHHHHHhc----------CCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCC
Q 043955 655 KKLLELDPGNP---GNYVLISNVFAAS----------RKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSH 721 (835)
Q Consensus 655 ~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h 721 (835)
+++++..|+++ ..+..++.+|... |++++|.+..+...+. .| .+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~----~p-------------------~~ 228 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI----FP-------------------DS 228 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----CT-------------------TC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----CC-------------------CC
Confidence 99999999855 4788999999977 9999999998776652 23 45
Q ss_pred cCcHHHHHHHHHHHHHh
Q 043955 722 SESDEIYKKLAEITEKL 738 (835)
Q Consensus 722 p~~~~i~~~l~~l~~~~ 738 (835)
|...+....|.++..++
T Consensus 229 ~~~~~a~~~l~~~~~~~ 245 (261)
T 3qky_A 229 PLLRTAEELYTRARQRL 245 (261)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66677777888877776
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-09 Score=96.15 Aligned_cols=116 Identities=9% Similarity=0.006 Sum_probs=99.6
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS 645 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~ 645 (835)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.+++. .+.| ++.+|..|..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3455677899999999998765 55673 566778999999999999999999988 6667 5668999999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHH
Q 043955 646 NKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
+.+.|+..++++++++|+++.+|..|+.+|...|++++|.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999999999999999999999999987764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=102.37 Aligned_cols=227 Identities=11% Similarity=-0.009 Sum_probs=160.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCC-cCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 043955 433 MISSYVHNGLANEALELFYLMNEANV-ESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCG 511 (835)
Q Consensus 433 li~~~~~~g~~~~Al~lf~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 511 (835)
....+...|++++|+..|++....-. .+|... ...++..+...|...|
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-------------------------------KAEFHFKVAEAYYHMK 155 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-------------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-------------------------------HHHHHHHHHHHHHHcC
Confidence 34456778899999998888765311 122211 1234566777888888
Q ss_pred ChhhHHHHhhhCCC-----C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhccc
Q 043955 512 ALDIANKVFNCVQT-----K-----DLILWTSMINANGLHGRGKVAIDLFYKMEAE----SFAPD-HITFLALLYACSHS 576 (835)
Q Consensus 512 ~~~~A~~~f~~~~~-----~-----~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~ 576 (835)
+++.|...|++..+ + ...+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 88888777765431 1 2457889999999999999999999998762 11111 24677888899999
Q ss_pred CcHHHHHHHHHHhhhcCC--CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCCHH-HHHHHHHHHhhcCc
Q 043955 577 GLINEGKKFLEIMRCDYQ--LDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QI--EPTAE-VWCALLGACRVHSN 646 (835)
Q Consensus 577 g~~~~a~~~~~~m~~~~~--i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~--~p~~~-~~~~ll~a~~~~~~ 646 (835)
|++++|..+|+....... ..| ....+..++.++.+.|++++|.+.+++. +- .|... .+..|...+...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999998764211 234 3677889999999999999999999886 22 23332 45555556667777
Q ss_pred ---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 647 ---KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 647 ---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
.+.|...+++ ....|.....+..|+.+|...|++++|.+..+..
T Consensus 316 ~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 316 ERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665 2233444566788999999999999998876654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-08 Score=103.65 Aligned_cols=195 Identities=10% Similarity=-0.015 Sum_probs=141.1
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcCChHHH
Q 043955 477 ILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHGRGKVA 547 (835)
Q Consensus 477 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 547 (835)
+++.|...+..+ ...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467776666554 4568889999999999976542 12 46899999999999999999
Q ss_pred HHHHHHHHHCCCCCC-------HHHHHHHHHHhccc-CcHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCH
Q 043955 548 IDLFYKMEAESFAPD-------HITFLALLYACSHS-GLINEGKKFLEIMRCDYQLDPW----PEHYACLVDLLGRANHL 615 (835)
Q Consensus 548 l~l~~~m~~~g~~Pd-------~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~ 615 (835)
+..|++.++. .|+ ..++..+..++... |++++|..+|+...+.+.-..+ ...|..++.++.+.|++
T Consensus 97 ~~~~~~Al~l--~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQI--FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999998762 221 24678888899996 9999999999987643211111 45688899999999999
Q ss_pred HHHHHHHHhC-CCCCC---H-----HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc-----hHHHHHHHH--hcC
Q 043955 616 EEAYQFVRSM-QIEPT---A-----EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN-----YVLISNVFA--ASR 679 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p~---~-----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g 679 (835)
++|++.+++. ...|+ . ..|..+..++...|+.+.|+..++++++++|+.+.. +..|...|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999887 33332 1 146666677888899999999999999999987654 233455554 456
Q ss_pred CchHHHHHH
Q 043955 680 KWKDVEQVR 688 (835)
Q Consensus 680 ~~~~a~~~~ 688 (835)
+|++|.+..
T Consensus 255 ~~~~A~~~~ 263 (292)
T 1qqe_A 255 QLSEHCKEF 263 (292)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-07 Score=96.19 Aligned_cols=260 Identities=12% Similarity=-0.043 Sum_probs=119.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHhccccCchHHHHHHHHHHHhCCC--ch----hHHHHHHH
Q 043955 335 AGYAQNNCHLKALELFRTVQLEGLDADVM----IIGSVLMACSGLKCMSQTKEIHGYIIRKGLS--DL----VILNAIVD 404 (835)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~--~~----~~~~~li~ 404 (835)
..+...|++++|...+++........+.. .+..+-..+...|+++.+...+...++.... +. .....+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556677777777777665543211211 1222223344455555555555554442211 11 13445556
Q ss_pred HHHhcCChhhHHHHHHhcCC-------C----CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhh
Q 043955 405 VYGKCGNIDYSRNVFESIES-------K----DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
.|...|++++|...|++... + ....+..+...|...|++++|...+++...........
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------- 171 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ---------- 171 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG----------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH----------
Confidence 66666666666666554421 1 11233445555666666666666666655421111000
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC----CC-ChhHHHH-----HHHHHHhcCC
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ----TK-DLILWTS-----MINANGLHGR 543 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~-~~~~~~~-----li~~~~~~g~ 543 (835)
.....+..+...+...|++++|...+++.. .+ +...|.. ++..+...|+
T Consensus 172 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 172 ---------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp ---------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 011223334444555555555555544322 11 1112221 1222445555
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhhhc---CCCCCC-hhHHHHHHHHHhhcCCHH
Q 043955 544 GKVAIDLFYKMEAESFAPD---HITFLALLYACSHSGLINEGKKFLEIMRCD---YQLDPW-PEHYACLVDLLGRANHLE 616 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~i~p~-~~~y~~lv~~l~r~g~~~ 616 (835)
.++|...+++.......++ ...+..+..++...|+.++|...++..... .+..++ .+.+..+..++.+.|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 5555555555443211110 122344444555556666666555544321 121122 235555666666666666
Q ss_pred HHHHHHHhC
Q 043955 617 EAYQFVRSM 625 (835)
Q Consensus 617 eA~~~~~~m 625 (835)
+|.+.+++.
T Consensus 311 ~A~~~l~~a 319 (373)
T 1hz4_A 311 DAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-09 Score=123.71 Aligned_cols=167 Identities=9% Similarity=-0.069 Sum_probs=102.6
Q ss_pred HhcCChhhHHHHhhhCC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcc
Q 043955 508 ARCGALDIANKVFNCVQ-----------TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSH 575 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~ 575 (835)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 45566666666665543 23455666666666666777777777766666 34443 455556666666
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
.|++++|...|+... .+.| +...|..+..++.+.|++++ ++.+++. ...| +...|..|..++...|+.+.|+.
T Consensus 480 ~g~~~~A~~~~~~al---~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVL---DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHH---HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 677777777666655 3455 35666666666666776666 6666655 3444 34466666666666677777777
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 653 VAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
.++++++++|+++.+|..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777666666666666655554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.9e-08 Score=97.38 Aligned_cols=186 Identities=11% Similarity=-0.018 Sum_probs=139.0
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT--K-D---LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD----HIT 565 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd----~~t 565 (835)
+....-.+...|.+.|++++|...|+.+.+ | + ...|..+...|.+.|++++|+..|++.++. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 345556677788899999999999998764 2 3 567888999999999999999999999984 443 234
Q ss_pred HHHHHHHhcc--------cCcHHHHHHHHHHhhhcCCCCCCh-hHH--------------HHHHHHHhhcCCHHHHHHHH
Q 043955 566 FLALLYACSH--------SGLINEGKKFLEIMRCDYQLDPWP-EHY--------------ACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 566 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~i~p~~-~~y--------------~~lv~~l~r~g~~~eA~~~~ 622 (835)
+..+..++.. .|++++|...|+...+.+.-.|.. ... ..++.+|.+.|++++|.+.+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5566667777 899999999999888654333322 222 56789999999999999999
Q ss_pred HhC----CCCCC-HHHHHHHHHHHhhc----------CchhHHHHHHHHHHhcCCCCCC---chHHHHHHHHhcCCchH
Q 043955 623 RSM----QIEPT-AEVWCALLGACRVH----------SNKELGEIVAKKLLELDPGNPG---NYVLISNVFAASRKWKD 683 (835)
Q Consensus 623 ~~m----~~~p~-~~~~~~ll~a~~~~----------~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~ 683 (835)
+++ |-.|. ...|..+..++... |+.+.|...++++++..|+++. ++..+..++...|+.++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 887 43332 33666666677655 8899999999999999999864 34556666655555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=8.5e-08 Score=94.68 Aligned_cols=178 Identities=9% Similarity=-0.039 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHH
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT--KD----LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI----TFLA 568 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~----t~~~ 568 (835)
.+..+...|.+.|++++|...|+.+.+ |+ ...|..+..+|.+.|++++|+..|++..+ ..|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHHH
Confidence 344455566667777777777766542 21 23566666677777777777777777666 344431 2222
Q ss_pred HHHHhcc------------------cCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043955 569 LLYACSH------------------SGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEP 629 (835)
Q Consensus 569 ll~a~~~------------------~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 629 (835)
+..++.. .|+.++|...|+.+.+. .|+ ...+.. +.+.+.+.+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a----~~~l~~~~~~~~--------- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDA----TKRLVFLKDRLA--------- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHH----HHHHHHHHHHHH---------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHH----HHHHHHHHHHHH---------
Confidence 2222222 34445555555444422 222 111110 000000000000
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC---CchHHHHHHHHhcCCchHHHHHHHHHHcCCC
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP---GNYVLISNVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
...-.+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|.+..+.+...+.
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0112344556788999999999999999999876 5689999999999999999999988887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.79 E-value=8.6e-08 Score=85.18 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
+|..+...|...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+|+.+... .| +...+..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 46667777777777777777777776632 223445555666666667777777777666532 23 34455556666
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 609 LGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.|...++++++++|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666665554 2222 3445555555555556666666666666655554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-08 Score=102.49 Aligned_cols=166 Identities=11% Similarity=-0.056 Sum_probs=128.9
Q ss_pred HhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC
Q 043955 519 VFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP 597 (835)
Q Consensus 519 ~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 597 (835)
.+......+...+..+...+.+.|+.++|+..|++... ..|+. ..+..+..++...|+.++|...++... ...|
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~---~~~p 182 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP---LQDQ 182 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC---GGGC
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc---hhhc
Confidence 33333344556677778888888999999999999888 56755 467777888889999999999998776 4456
Q ss_pred ChhHHHH-HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC--CCchHHHH
Q 043955 598 WPEHYAC-LVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN--PGNYVLIS 672 (835)
Q Consensus 598 ~~~~y~~-lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~ 672 (835)
+...... ..-.+.+.|+.++|.+.+++. ...| +...|..|..++...|+.+.|+..++++++.+|++ +..+..|+
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 5433322 333466778888888888776 4455 56688899999999999999999999999999988 88899999
Q ss_pred HHHHhcCCchHHHHHHH
Q 043955 673 NVFAASRKWKDVEQVRM 689 (835)
Q Consensus 673 ~~y~~~g~~~~a~~~~~ 689 (835)
.+|...|+.++|....+
T Consensus 263 ~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 263 EILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHH
Confidence 99999999999876543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-08 Score=91.35 Aligned_cols=102 Identities=7% Similarity=-0.053 Sum_probs=91.4
Q ss_pred cCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 592 DYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 592 ~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
...+.| +.+.+..++..+.+.|++++|++.+++. ...| ++..|..|..++...|+.+.|+..++++++++|+++.+|
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 347788 4788889999999999999999999988 5566 577999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 669 VLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 669 ~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..++.+|...|++++|.+..+...+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998776655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.8e-08 Score=110.21 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=124.8
Q ss_pred cCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHH
Q 043955 510 CGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKF 585 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~ 585 (835)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3788889999988764 3577899999999999999999999999998 5665 46788888899999999999999
Q ss_pred HHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CchhHHHHHHHHHHh
Q 043955 586 LEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH---SNKELGEIVAKKLLE 659 (835)
Q Consensus 586 ~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---~~~~~a~~~~~~~~~ 659 (835)
|+...+ +.| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++... |+.+.|...++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 998874 467 4788999999999999999999999987 4555 466888888999999 999999999999999
Q ss_pred cCCCCCCchHHHH
Q 043955 660 LDPGNPGNYVLIS 672 (835)
Q Consensus 660 l~p~~~~~~~~l~ 672 (835)
.+|++...|.+|+
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999888777
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=8e-08 Score=111.67 Aligned_cols=194 Identities=14% Similarity=0.014 Sum_probs=145.6
Q ss_pred hcccchhhHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcC
Q 043955 473 SSLSILKKGKELNGFIIR-------KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHG 542 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~-------~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 542 (835)
...+++++|.+.+..+++ ...+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 344455555555544441 1112345667778888999999999999998876 347789999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 043955 543 RGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
++++|++.|++.++ ..|+. ..+..+..++...|++++ ...|+... .+.| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVW---STNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHH---HhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 57765 567888889999999999 99999887 4578 47889999999999999999999
Q ss_pred HHHhC-CCCCCHH-HHHHHHHHHhhcCc-----hhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 621 FVRSM-QIEPTAE-VWCALLGACRVHSN-----KELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 621 ~~~~m-~~~p~~~-~~~~ll~a~~~~~~-----~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
.++++ ...|+.. .|..+..++...++ .+...++.+.+.++.|+++..+.+-.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 99998 6788754 77777777655554 45566667777777776666554443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-07 Score=96.19 Aligned_cols=204 Identities=10% Similarity=0.018 Sum_probs=129.4
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc---CChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVE---SDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSL 503 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 503 (835)
..+|..+...|...|++++|+..|++....... ++. +....++..+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~l 91 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH-------------------------------PAVAATLNNL 91 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc-------------------------------hHHHHHHHHH
Confidence 456777788888888888888888887652100 110 1123345666
Q ss_pred HHHHHhcCChhhHHHHhhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HH
Q 043955 504 VDMYARCGALDIANKVFNCVQT-----------KDLILWTSMINANGLHGRGKVAIDLFYKMEAE------SFAPDH-IT 565 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~------g~~Pd~-~t 565 (835)
...|...|++++|.+.|++... ....+|..+...|...|++++|+..|+++.+. +-.|+. .+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 7777777777777777765431 12457888888888889999999988888763 114433 46
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcC------CCCCC-hhHHHHHHHHHhh------cCCHHHHHHHHHhCC-CCCC-
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDY------QLDPW-PEHYACLVDLLGR------ANHLEEAYQFVRSMQ-IEPT- 630 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~i~p~-~~~y~~lv~~l~r------~g~~~eA~~~~~~m~-~~p~- 630 (835)
+..+...+...|++++|..+|+...+.. ...|. ...|..+...... ...+.++...++... ..|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7778888889999999999998776421 12332 3334444433333 334666666666663 3343
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcC
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELD 661 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 661 (835)
..+|..|...+...|+.+.|...+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3478888889999999999999999998763
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.7e-08 Score=86.44 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=52.5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 595 LDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 595 i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
|+|+ .+.|...+..|.+.|++++|++.+++. ...| ++.+|..+..++...|+.+.|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4443 444555555555555555555555554 3333 344555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCchHHHHHHHHH
Q 043955 672 SNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 672 ~~~y~~~g~~~~a~~~~~~m 691 (835)
+.+|...|++++|.+..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555554433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-06 Score=88.03 Aligned_cols=173 Identities=10% Similarity=-0.008 Sum_probs=117.7
Q ss_pred HHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043955 516 ANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRC 591 (835)
Q Consensus 516 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (835)
|...|++... ++..++..+..+|...|+.++|++++.+.+..|-.++. ..+...+..+...|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666542 45556667778888888888888888887665433344 3455666777888888888888888873
Q ss_pred cCCCCC-----ChhHHHHHHHH----HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhc-
Q 043955 592 DYQLDP-----WPEHYACLVDL----LGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLEL- 660 (835)
Q Consensus 592 ~~~i~p-----~~~~y~~lv~~----l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l- 660 (835)
..| +......+..+ ....+++++|..+++++ .-.|+...-..|++++...|+++.|+...+.++++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456 23333333333 33334888888888888 33455222233444667778999999988888777
Q ss_pred ---------CCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 661 ---------DPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 661 ---------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+|+|+.++..+..++...|+ +|.+++.++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777667777786 78888888876
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=84.76 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=110.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 641 (835)
.+..+...+...|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 4566777888999999999999988743 45 5778888999999999999999999887 3334 566888898999
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...|+.+.|...++++++..|+++..+..++.+|...|++++|.+..+.+.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=93.35 Aligned_cols=153 Identities=10% Similarity=0.058 Sum_probs=65.4
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCc------
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGK--VAIDLFYKMEAESFAP-DHITFLALLYACSHSGL------ 578 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~------ 578 (835)
++++++...++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++.+. .| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 44555555554443 234445555544444455444 555555555542 22 22333333333333333
Q ss_pred HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHH-HHHHHHhC-CCC---C-CHHHHHHHHHHHhhcCchhHHH
Q 043955 579 INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEE-AYQFVRSM-QIE---P-TAEVWCALLGACRVHSNKELGE 651 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~e-A~~~~~~m-~~~---p-~~~~~~~ll~a~~~~~~~~~a~ 651 (835)
+++++++++.+. .+.| +...|.....++.+.|+..+ +.++.++. ... | ++..|..|..++...|+.+.|.
T Consensus 202 ~~eEl~~~~~aI---~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKI---VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHH---HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 444444444443 2234 23444444444444444222 33344433 111 1 3334444444444444444444
Q ss_pred HHHHHHHh-cCCCCCCch
Q 043955 652 IVAKKLLE-LDPGNPGNY 668 (835)
Q Consensus 652 ~~~~~~~~-l~p~~~~~~ 668 (835)
.+++++.+ +||-...+|
T Consensus 279 ~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHhccChHHHHHH
Confidence 44444443 444444333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-08 Score=93.04 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=52.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC--CCchHHHHHHHHhcCCchHHHHHHH
Q 043955 618 AYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN--PGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 618 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
|.+.+++. ...| ++..|..+..++...|+.+.|+..++++++++|+. +..+..|+.+|...|++++|....+
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 44444444 3345 45677777778888888888888888888888865 4478888888888888888777654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-08 Score=86.00 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=90.6
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 043955 559 FAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVW 634 (835)
Q Consensus 559 ~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 634 (835)
+.|+. ..+......+.+.|++++|.+.|+... .+.| +...|..++.+|.+.|++++|++.+++. .+.| ++..|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV---KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55654 356667777778888888888887766 3456 4778888888888888888888888876 5556 45688
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 635 CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 635 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
..+..++...|+.+.|+..++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 88999999999999999999999999999988887777653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=89.25 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=87.4
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
.+.| +...+..++..+.+.|++++|.+.+++. ...| ++..|..+..++...|+.+.|+..++++++++|+++..|..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 5677 4777888899999999999999999887 4455 67789889899999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHc
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+|...|++++|.+..+...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988776554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-07 Score=92.51 Aligned_cols=159 Identities=15% Similarity=0.040 Sum_probs=88.1
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQT-----KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-----DHITFLALLY 571 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-----d~~t~~~ll~ 571 (835)
.+...|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+...+..
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHHH
Confidence 444555556666666666655422 2344555566666666667777777776665 455 2444444444
Q ss_pred H--hcc--cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CC-CHHHHH
Q 043955 572 A--CSH--SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QI----------EP-TAEVWC 635 (835)
Q Consensus 572 a--~~~--~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~----------~p-~~~~~~ 635 (835)
+ ... .+...+|..+|+.+...+ |+......+..++.+.|++++|++.++.+ .. .| |+.+..
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 4 222 226667777776665432 33222222333566677777777776543 11 24 344554
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 636 ALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 636 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.++......|+ .|.+..+++.++.|++|..
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 55444444555 6677778888888877544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-07 Score=108.73 Aligned_cols=147 Identities=16% Similarity=0.069 Sum_probs=113.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA 618 (835)
.|+.++|++.|++..+ ..|+ ...+..+..++...|++++|.++|+... .+.| +...|..++.+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4788999999999987 5665 4678888889999999999999999887 5678 488999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc---CCchHHHHHHHHHH
Q 043955 619 YQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAAS---RKWKDVEQVRMRMR 692 (835)
Q Consensus 619 ~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~ 692 (835)
.+.+++. ...| +...|..+..++...|+.+.|...++++++++|+++..+..++.+|... |++++|.+..+...
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999887 4556 4668999999999999999999999999999999999999999999999 88888877765543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=92.36 Aligned_cols=155 Identities=12% Similarity=-0.017 Sum_probs=114.4
Q ss_pred HHHHHhcCChhhHHHHhhhCCCC---ChhHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-
Q 043955 504 VDMYARCGALDIANKVFNCVQTK---DLILWTS----------------MINANGLHGRGKVAIDLFYKMEAESFAPDH- 563 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~----------------li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~- 563 (835)
...+.+.|++++|...|++.... +...|.. +...|...|++++|+..|++.++ ..|+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 34455677777777777766532 3345555 88899999999999999999998 56754
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCHH--HHHHHH
Q 043955 564 ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH--LEEAYQFVRSMQIEPTAE--VWCALL 638 (835)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~--~~eA~~~~~~m~~~p~~~--~~~~ll 638 (835)
..+..+..++...|++++|...|+... .+.| +...|..++.+|...|. .+++...++... .|++. .|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKIL---QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 567888888999999999999999887 4578 48888889988876654 445566665552 44443 444455
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.+....|+.+.|+..++++++++|++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 55667789999999999999999974
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=87.58 Aligned_cols=154 Identities=13% Similarity=0.011 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hc
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA--CS 574 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a--~~ 574 (835)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++... ..|+.. +..++.. +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 44566778899999999999999874 4678899999999999999999999999876 445433 2222221 11
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhhcCchhH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT---AEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~~~~~~~ 649 (835)
..+...+|...|+... .+.| +...+..++.++.+.|++++|.+.++++ ...|+ ...|..|...+...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQEL---AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2222234677888776 4578 4888999999999999999999999887 55554 5589999999999999999
Q ss_pred HHHHHHHHHh
Q 043955 650 GEIVAKKLLE 659 (835)
Q Consensus 650 a~~~~~~~~~ 659 (835)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-06 Score=84.08 Aligned_cols=172 Identities=10% Similarity=-0.078 Sum_probs=127.2
Q ss_pred hHHHHhhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----cHHHHHHHHHHh
Q 043955 515 IANKVFNCVQ-TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG----LINEGKKFLEIM 589 (835)
Q Consensus 515 ~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m 589 (835)
+|.+.|.+.. ..++.++..+...|...|+.++|++.|++..+.| +...+..+...+.. | +.++|..+|+..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4555555443 3467778888888888888888888888887754 44555566666666 5 788888888876
Q ss_pred hhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh----cCchhHHHHHHHHH
Q 043955 590 RCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSM-QIEPT---AEVWCALLGACRV----HSNKELGEIVAKKL 657 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~----~~~~~~a~~~~~~~ 657 (835)
.+. -++..+..|..+|.. .+++++|.+.+++. ...|. +..+..|...+.. .+|.+.|...++++
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 432 146677778888876 78899999888887 44453 6677777777776 77899999999999
Q ss_pred HhcCCCCCCchHHHHHHHHhc-C-----CchHHHHHHHHHHcCC
Q 043955 658 LELDPGNPGNYVLISNVFAAS-R-----KWKDVEQVRMRMRGSG 695 (835)
Q Consensus 658 ~~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 695 (835)
.++ |.++.++..|+.+|... | ++++|.+..++..+.|
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 988 77778889999998764 3 7888988887766644
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=90.62 Aligned_cols=220 Identities=10% Similarity=-0.031 Sum_probs=152.6
Q ss_pred hCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHH
Q 043955 439 HNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANK 518 (835)
Q Consensus 439 ~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (835)
..|++++|.+++++..+.. +.. + +...++++.+...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998877531 111 1 11135666666665543 556888899999988
Q ss_pred HhhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhcccCcHHHHHH
Q 043955 519 VFNCVQT-----KD----LILWTSMINANGLHGRGKVAIDLFYKMEAES---FAPD--HITFLALLYACSHSGLINEGKK 584 (835)
Q Consensus 519 ~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g---~~Pd--~~t~~~ll~a~~~~g~~~~a~~ 584 (835)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...+.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876542 12 3478889999999999999999999876521 1222 2467778888888 99999999
Q ss_pred HHHHhhhcC---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCchhHHHH
Q 043955 585 FLEIMRCDY---QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI---EPT----AEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 585 ~~~~m~~~~---~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
+|+.....+ +-.+ ....|..+..+|.+.|++++|++.+++. .+ .++ ...|..+...+...|+.+.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998776432 1111 1467888999999999999999999876 11 222 1245555566667799999999
Q ss_pred HHHHHHhcCCCCCCc-----hHHHHHHHHhcCCchHHHH
Q 043955 653 VAKKLLELDPGNPGN-----YVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 686 (835)
.+++++ ++|..... ...+...| ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99987654 23444445 4566555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-07 Score=83.22 Aligned_cols=100 Identities=12% Similarity=-0.018 Sum_probs=86.3
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
.+.| +...+..++..+.+.|++++|.+.+++. ...| ++..|..+..++...|+.+.|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 5667 4667777888899999999999999887 4455 56789888889999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHc
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+|...|++++|.+..+...+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-07 Score=93.60 Aligned_cols=161 Identities=9% Similarity=-0.061 Sum_probs=127.4
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITF-LAL 569 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~-~~l 569 (835)
+.+......+...+...|++++|...|++.. ..+...+..+...|.+.|+.++|+..|++... ..|+.... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 4455666778888889999999999998765 34677899999999999999999999999877 46765432 223
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhhc
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT---AEVWCALLGACRVH 644 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~~ 644 (835)
...+...|..++|...|+... ...| +.+.+..++.+|.+.|++++|++.++++ ...|+ ...|..|+..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al---~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQV---AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHH---hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 334666777788888888776 4467 5888899999999999999999998887 44454 56899999999999
Q ss_pred CchhHHHHHHHHHHh
Q 043955 645 SNKELGEIVAKKLLE 659 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~ 659 (835)
|+.+.|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-05 Score=84.30 Aligned_cols=200 Identities=9% Similarity=-0.040 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHH-HHhhhC
Q 043955 445 EALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIAN-KVFNCV 523 (835)
Q Consensus 445 ~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~-~~f~~~ 523 (835)
.+..+|++++... .-++..|...+.-+...|+++.|+.+++..++. +.+..++.. |+.....++.. .+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 4556777766532 223444555555555667777888888877777 333333332 32222211111 111111
Q ss_pred C------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHhcccCcHHHHHHHHHHh
Q 043955 524 Q------------TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLA--LLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 524 ~------------~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~--ll~a~~~~g~~~~a~~~~~~m 589 (835)
. ......|...+..+.++|..+.|..+|++. .. ..++...|.. .+.. ...++.+.|+.+|+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~-~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEY-YATGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHH-HHHCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHH-HHCCChHHHHHHHHHH
Confidence 0 011246777888777788899999999988 32 1223333432 2221 1234688999999988
Q ss_pred hhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 590 RCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
.+.++-. ++.+...++.+.+.|..+.|..++++++ ....+|...+.--..+|+.+.+..++++.+
T Consensus 347 l~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8765333 4456667888888999999999999983 356688888888888888888887777665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-07 Score=91.94 Aligned_cols=138 Identities=10% Similarity=-0.006 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~ 608 (835)
+-.....+...|++++|.++|+.+.. ..|+.+....+...+.+.|++++|+.+|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 44466777788888888888888776 3476655555555778888899998888744321 1 221 3456778888
Q ss_pred HhhcCCHHHHHHHHHhC---CCCCC-H-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 609 LGRANHLEEAYQFVRSM---QIEPT-A-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m---~~~p~-~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
+.+.|++++|++.+++. |.+|. . ..+..+..+++..|+.+.|...++++++.+|+ +..+..|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999988877 33354 3 36777778888899999999999999999997 666555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=86.45 Aligned_cols=185 Identities=11% Similarity=-0.002 Sum_probs=131.6
Q ss_pred hhHhHHHHhhcccchhhHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-Ch---hHHHHHH
Q 043955 464 TLVSALSAASSLSILKKGKELNGFIIRKGFNLE--GSVASSLVDMYARCGALDIANKVFNCVQT--K-DL---ILWTSMI 535 (835)
Q Consensus 464 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~---~~~~~li 535 (835)
.+......+...|+++.|...+..+++...... ...+..+...|.+.|++++|...|+++.+ | +. .+|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344455667888999999999999998644322 35778889999999999999999998763 3 22 2455555
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC
Q 043955 536 NANGL------------------HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP 597 (835)
Q Consensus 536 ~~~~~------------------~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 597 (835)
..|.. .|+.++|+..|+++++ ..|+..... ++......+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~-------------~a~~~l~~~~~~----- 145 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTT-------------DATKRLVFLKDR----- 145 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHH-------------HHHHHHHHHHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHH-------------HHHHHHHHHHHH-----
Confidence 55554 5789999999999998 567653211 111111111100
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.......++..|.+.|++++|...++++ ...|+ ...|..+..++...|+.+.|+..++++....|++...+
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 0122345788899999999999998887 33343 24688888899999999999999999999999876553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.6e-07 Score=86.98 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHhcccCcHHHHHHHHHHhhhc
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLA----------------LLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
.+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|+...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-- 81 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL-- 81 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 344556677889999999999999998 678764 4555 7788899999999999999887
Q ss_pred CCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc--hhHHHHHHHHHHhcCCCCCCc
Q 043955 593 YQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN--KELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 593 ~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~--~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.+.| +...|..++.++...|++++|.+.+++. .+.| ++.+|..|..++...|+ .+.++..+++++...|.+ ..
T Consensus 82 -~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a 159 (208)
T 3urz_A 82 -QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YA 159 (208)
T ss_dssp -HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HH
T ss_pred -HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HH
Confidence 4578 5889999999999999999999999988 5666 45688888877755543 445566666665444332 23
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 668 YVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 668 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..++..+...|++++|....++..+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55678888889999999998876654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=96.65 Aligned_cols=190 Identities=8% Similarity=-0.073 Sum_probs=136.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~ 571 (835)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556777888999999999999998765 34778899999999999999999999999987 56654 56778888
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHH
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a 650 (835)
++...|++++|...|+...+ +.|+ ...+...+....+.++..+... .......++..+...| +... .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 99999999999999987763 3342 1122222222222222222222 2223344455554444 3333 6889999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHhc-CCchHHHHHHHHHHc
Q 043955 651 EIVAKKLLELDPGNPGNYVLISNVFAAS-RKWKDVEQVRMRMRG 693 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 693 (835)
...++++++++|++......+..++... +++++|.++.....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999888888888888877 788999988876654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.5e-06 Score=84.26 Aligned_cols=147 Identities=15% Similarity=0.195 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHH--HHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC---
Q 043955 542 GRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLIN--EGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH--- 614 (835)
Q Consensus 542 g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~--- 614 (835)
++.++++++++++.+ ..| |...|..-.....+.|.++ +++++++.+.+ ..| +-..|..-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccch
Confidence 567788888888877 344 4456666666666677766 77777777773 456 45556555666666665
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc-hhHHHHHHHHHHhcC---CCCCCchHHHHHHHHhcCCchHHH
Q 043955 615 ---LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN-KELGEIVAKKLLELD---PGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 615 ---~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
+++++++++++ ...| |...|+-+.......|+ .+.....++++++++ |.++.++..|+.+|...|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 77788777766 4455 56678777777766665 344556777777766 677777788888888888888888
Q ss_pred HHHHHHHc
Q 043955 686 QVRMRMRG 693 (835)
Q Consensus 686 ~~~~~m~~ 693 (835)
++.+.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=85.38 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=95.0
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRV 643 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 643 (835)
+..+...+...|++++|...|+.. +.|+...|..++.++.+.|++++|++.+++. ...| +..+|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445566677777777777644 3556677777777777888888888777766 3334 45678888888888
Q ss_pred cCchhHHHHHHHHHHhcCCCCC----------------CchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 644 HSNKELGEIVAKKLLELDPGNP----------------GNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
.|+.+.|...+++++++.|++. ..+..++.+|...|++++|.+..+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8999999999999999888877 88899999999999999999988776653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=4e-06 Score=81.49 Aligned_cols=143 Identities=10% Similarity=-0.070 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcH
Q 043955 501 SSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLI 579 (835)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~ 579 (835)
..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++.... .|+ ...+..+..++...|++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccH
Confidence 445666777788888888888777777777777888888888888888888777763 343 34566666667777777
Q ss_pred HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 580 NEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTA-EVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 580 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
++|...|+...+...-.+... +...| +...|+. .+|..+..++...|+.+.|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777776653221111000 00000 0123322 356666666777777777777777777
Q ss_pred hcCCCC
Q 043955 659 ELDPGN 664 (835)
Q Consensus 659 ~l~p~~ 664 (835)
+++|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 777765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-07 Score=83.87 Aligned_cols=96 Identities=8% Similarity=0.019 Sum_probs=51.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+..++...|++++|..+|+... .+.| +...|..++.+|.+.|++++|++.++++ .+.| ++..|..+..++.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 3334444444455555555554444 2344 3445555555555555555555555554 3334 2345666666666
Q ss_pred hcCchhHHHHHHHHHHhcCCCC
Q 043955 643 VHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
..|+.+.|+..+++++++.|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 6666666666666666666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=77.37 Aligned_cols=112 Identities=14% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+...+...|++++|..+|+... ...| +...+..++.++.+.|++++|++.++++ ...| +..+|..+..++.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3334444444444444444444433 2233 3445555555666666666666655554 2233 4567777778888
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
..|+.+.|+..++++++++|+++..+..++.+|...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88889999999999999999998888999888887664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-05 Score=84.38 Aligned_cols=367 Identities=11% Similarity=0.010 Sum_probs=203.2
Q ss_pred cC-ChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC-hHHHH
Q 043955 36 NG-EPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYD-FRKAR 113 (835)
Q Consensus 36 ~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~ 113 (835)
.| +...|..+|+++... -|. ++.+.+.+||+..+.. .|++.+|..-+..-.+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377777787777653 122 7888888888887774 4677788877776666553 34456
Q ss_pred HHHhhc----C-CCCCeeeHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc---CCChhHHHH
Q 043955 114 QLFDRM----G-EKEDVVLWNSIISAYS----ASGQCLEALGLFREMQRVGLVTNAYTFVAALQACED---SSFETLGME 181 (835)
Q Consensus 114 ~~f~~m----~-~~~~~~~~n~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~~~~~~a~~ 181 (835)
.+|+.. + .+.+...|...+.-+. .+|+.+.+..+|++.... ++. ....+-..+.. ..+...+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHH
Confidence 666653 2 3245667777776543 235677788888888763 211 11222221111 111111111
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC----CCcccHHHHHHHHHcCC--C-----hhHHHHHHH
Q 043955 182 IHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN----KDSVSWNSMLTGFVQND--L-----YCKAMQFFR 250 (835)
Q Consensus 182 l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~d~~~~~~li~~~~~~g--~-----~~~A~~l~~ 250 (835)
+.... . +.+..|+.+++.+.. .+...|...+.--..++ - ...+..+|+
T Consensus 145 ~~~~~-------------------~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDT-------------------L--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHH-------------------H--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHH-------------------h--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 11111 0 112222222221111 12334555444322221 0 234556666
Q ss_pred HHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHH-HHHHHhcC------
Q 043955 251 ELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYM-GRVFYQMT------ 323 (835)
Q Consensus 251 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~m~------ 323 (835)
++.... +-+...+...+.-+.+.|+.+.|+.+++..++. +.+...+. .|+.....++. .++.+...
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC------
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccch
Confidence 666532 222344555555556667777777777777776 22322222 22222111111 11111110
Q ss_pred ------CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc-cccCchHHHHHHHHHHHhCCCch
Q 043955 324 ------AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACS-GLKCMSQTKEIHGYIIRKGLSDL 396 (835)
Q Consensus 324 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~~~~i~~~~~~~~~~~~ 396 (835)
......|-..+....+.+..+.|..+|.+. .. ..++...|......-. ..++.+.|+.+++..++..+.+.
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 001245777777777788899999999988 22 1123333332211111 12369999999999999876555
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNE 455 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~ 455 (835)
..+...++...+.|+.+.|+.+|+... +....|...+.-=...|+.+.+..+++++..
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567778899999999999999999984 4567788888777778999988888888874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.2e-07 Score=77.90 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
.+.|..++..+.+.|++++|.+.+++. ...| ++.+|..+..++...|+.+.|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 455667778888888888888888776 4445 56688888888888899999999999999999999889999999999
Q ss_pred hcCCchHHHHHHHHHHc
Q 043955 677 ASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 677 ~~g~~~~a~~~~~~m~~ 693 (835)
..|++++|.+..+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999888766554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=83.31 Aligned_cols=160 Identities=9% Similarity=-0.053 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC----hhHH
Q 043955 532 TSMINANGLHGRGKVAIDLFYKMEAES-FAPDHI----TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW----PEHY 602 (835)
Q Consensus 532 ~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y 602 (835)
...+..+...|++++|++++++..+.. ..|+.. .+..+...+...|++++|..+|+.......-.++ ...|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334677888899999999999988732 223321 2334666677888999999999888753222222 3468
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-------CC-CCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC------CCc
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSM-------QI-EPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN------PGN 667 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m-------~~-~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~ 667 (835)
..++.+|.+.|++++|++.++++ |. .|. ..+|..+...+...|+.+.|...+++++++.|+. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999888776 11 122 2368888899999999999999999999887654 456
Q ss_pred hHHHHHHHHhcCC-chHHHHHHHHH
Q 043955 668 YVLISNVFAASRK-WKDVEQVRMRM 691 (835)
Q Consensus 668 ~~~l~~~y~~~g~-~~~a~~~~~~m 691 (835)
|..++.+|...|+ +++|.+..+..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 8899999999995 59998776544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=76.15 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=74.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 641 (835)
++..+...+...|++++|..+|+.+... .| +...+..++.++.+.|++++|...++++ ...| +..+|..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3444444455555555555555544422 23 3455566666666677777777666665 2233 556777888888
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
...|+.+.|...++++++++|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88889999999999999999998888888888876654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=77.26 Aligned_cols=115 Identities=14% Similarity=0.001 Sum_probs=84.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 641 (835)
.+..+...+...|++++|..+|+..... .| +...+..++.++...|++++|.+.+++. ...| +..+|..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4445555566666666666666655532 34 3566667777777777777777777665 3344 456788888888
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
...|+.+.|...++++++++|+++..+..++.+|...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 88899999999999999999999999999999998888763
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-07 Score=83.62 Aligned_cols=110 Identities=12% Similarity=0.021 Sum_probs=77.2
Q ss_pred CCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 043955 559 FAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVW 634 (835)
Q Consensus 559 ~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 634 (835)
+.|+.. .+..+...+...|++++|...|+... .+.| +...|..++.++.+.|++++|++.+++. .+.| ++..|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC---VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 445442 44555566667777777777777665 3355 4666777777777778888887777766 3444 44577
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 635 CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 635 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
..+..++...|+.+.|+..++++++++|+++......
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 7787888888999999999999999999887664443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-06 Score=86.41 Aligned_cols=161 Identities=8% Similarity=-0.078 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCC--CCCC--h
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-----ITFLALLYACSHSGLINEGKKFLEIMRCDYQ--LDPW--P 599 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--i~p~--~ 599 (835)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|..+|+....... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45566777888899999999999888874322111 1233445566788899999999987763221 1222 4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC------
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-------QIEPT--AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN------ 664 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------ 664 (835)
..|..++.+|...|++++|.+.++++ |..+. ..++..+...+...|+.+.|...+++++++.++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57889999999999999999888775 22221 2478888889999999999999999999886531
Q ss_pred CCchHHHHHHHHhcCCchHH-HHHHH
Q 043955 665 PGNYVLISNVFAASRKWKDV-EQVRM 689 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a-~~~~~ 689 (835)
+..|..++++|...|++++| ....+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 45678899999999999999 66433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=7.5e-07 Score=93.79 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=117.6
Q ss_pred cCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 043955 510 CGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFL 586 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~ 586 (835)
.+++++|...|+.... .+...|..+...|.+.|++++|+..|++.+. +.|+...+ . .+++..
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~---------~--~~~~~~-- 190 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF---------S--NEEAQK-- 190 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC---------C--SHHHHH--
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC---------C--hHHHHH--
Confidence 3556667666665442 2456788888888888888888888888887 34443110 0 011111
Q ss_pred HHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 587 EIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 587 ~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+.| ....|..+..+|.+.|++++|++.+++. .+.| ++..|..+..++...|+.+.|+..++++++++|+
T Consensus 191 --------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 191 --------AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred --------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 111 1466778888888889999998888877 4555 5668888889999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCCchHHH-HHHHHH
Q 043955 664 NPGNYVLISNVFAASRKWKDVE-QVRMRM 691 (835)
Q Consensus 664 ~~~~~~~l~~~y~~~g~~~~a~-~~~~~m 691 (835)
++.++..|+.+|...|++++|. +..+.|
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984 344444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-05 Score=78.13 Aligned_cols=160 Identities=9% Similarity=-0.091 Sum_probs=127.2
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT-KDLILWTSMINANGLHG----RGKVAIDLFYKMEAESFAPDHITFLALL 570 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g----~~~~Al~l~~~m~~~g~~Pd~~t~~~ll 570 (835)
++.....|..+|...|++++|.+.|++..+ .++.++..|...|.. | +.++|++.|++..+.| +...+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 566777888889899999999999987764 477888888888887 6 8999999999998754 455666677
Q ss_pred HHhcc----cCcHHHHHHHHHHhhhcCCCCCC---hhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043955 571 YACSH----SGLINEGKKFLEIMRCDYQLDPW---PEHYACLVDLLGR----ANHLEEAYQFVRSM-QIEPTAEVWCALL 638 (835)
Q Consensus 571 ~a~~~----~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~~~~~~~ll 638 (835)
..+.. .++.++|..+|+... ...|. +..+..|..+|.. .+++++|.+.+++. ...+++..+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776 889999999999876 44553 7888889999988 88999999999988 3334555666666
Q ss_pred HHHhh------cCchhHHHHHHHHHHhcCC
Q 043955 639 GACRV------HSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 639 ~a~~~------~~~~~~a~~~~~~~~~l~p 662 (835)
..+.. ..|.+.|...++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66653 2389999999999998864
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-06 Score=82.95 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=70.9
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCch--h
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGA-CRVHSNK--E 648 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a-~~~~~~~--~ 648 (835)
..|++++|...|+.... ..| +...|..++.++...|++++|.+.++++ ...| ++.+|..+..+ +...|+. +
T Consensus 22 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHH---HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 44555555555555442 234 3555666666666666666666666655 2233 44456666666 5566776 7
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|+..++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777665544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=79.09 Aligned_cols=124 Identities=8% Similarity=-0.022 Sum_probs=82.4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+...+...|++++|..+|+.... +.| +...+..++.++.+.|++++|.+.+++. ...| +..+|..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33444445555555555555555442 234 3555666666666777777777666655 3334 4557777777888
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHH--HHHHhcCCchHHHHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLIS--NVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~--~~y~~~g~~~~a~~~~~~m~ 692 (835)
..|+.+.|...++++++++|+++..+..+. ..+...|++++|.+......
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888888888887774444 44778888888888765543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=90.98 Aligned_cols=197 Identities=9% Similarity=-0.057 Sum_probs=148.2
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
..|++++|.+++....+..-. . .+...|++++|...|.. ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888877764221 1 12114788888888765 36678899999999999999
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC--CC--ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 554 MEAE----SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQL--DP--WPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 554 m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i--~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
..+. |-.+. ..+|..+...+...|++++|..+|+....-+.- .| ....|..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8762 11111 246888888999999999999999876543211 22 25678899999999 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC------chHHHHHHHHhcCCchHHHHHHHH
Q 043955 625 M-QIE---PT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG------NYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 625 m-~~~---p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
. .+. .+ ..++..+...+...|+.+.|...+++++++.|++.. .+..++.+|...|++++|.+..+.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 221 11 347888888999999999999999999999887653 567778899999999999998775
Q ss_pred HH
Q 043955 691 MR 692 (835)
Q Consensus 691 m~ 692 (835)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 54
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=82.36 Aligned_cols=128 Identities=10% Similarity=0.057 Sum_probs=91.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH-HhhcCCH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL-LGRANHL 615 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~-l~r~g~~ 615 (835)
...|++++|+..|++.... .| +...+..+...+...|++++|..+|+...+ +.| +...+..++.+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ---LRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCCc
Confidence 3456777777777777663 44 345666777777788888888888877663 345 46677777777 6688887
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 616 --EEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 616 --~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
++|.+.++++ ...| +..+|..+...+...|+.+.|...++++++++|+++....++
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 8888888776 4445 456788888888999999999999999999999987655444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=83.37 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=137.8
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-Chh
Q 043955 436 SYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCG-ALD 514 (835)
Q Consensus 436 ~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~ 514 (835)
...+.+..++|++++.+++. +.|+..|. ++.--..+...| .++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~--~nP~~yta----------------------------------Wn~R~~iL~~l~~~l~ 106 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR--MNPAHYTV----------------------------------WQYRFSLLTSLNKSLE 106 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH--HCTTCHHH----------------------------------HHHHHHHHHHTTCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHH--hCchhHHH----------------------------------HHHHHHHHHHhhhhHH
Confidence 33445556678888888776 45655442 333333333445 477
Q ss_pred hHHHHhhhCC---CCChhHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHH--------
Q 043955 515 IANKVFNCVQ---TKDLILWTSMINANGLH-G-RGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLIN-------- 580 (835)
Q Consensus 515 ~A~~~f~~~~---~~~~~~~~~li~~~~~~-g-~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~-------- 580 (835)
++++.++.+. .++..+|+.-...+... + +.++++++++++++ ..| |...|..-.....+.|..+
T Consensus 107 eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 107 DELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHH
Confidence 7777777655 34666777777666665 6 77888888888876 344 3455555444444444444
Q ss_pred HHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCch---
Q 043955 581 EGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH-------LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNK--- 647 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~-------~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~--- 647 (835)
+++++++.+.+ ..| +...|+....++.+.|+ +++++++++++ ...| |...|.-+-+.+...|+.
T Consensus 185 eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 185 SELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence 78888887773 456 56677777777777776 78888888776 4556 677888877776665543
Q ss_pred -----------------hHHHHHHHHHHhcC------CCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 648 -----------------ELGEIVAKKLLELD------PGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 648 -----------------~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..-...+..++... +..+-+...|+.+|...|+.++|.++.+.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11222222222222 34455668899999999999999999888864
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=9.5e-07 Score=77.26 Aligned_cols=95 Identities=16% Similarity=0.029 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...+..++..+.+.|++++|...+++. ...| ++..|..|..++...|+.+.|+..++++++++|+++..+..|+.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345666788888999999999999887 5556 56688888888899999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHc
Q 043955 677 ASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 677 ~~g~~~~a~~~~~~m~~ 693 (835)
..|++++|.+..+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999988776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=6.9e-07 Score=80.75 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=79.6
Q ss_pred CCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 043955 559 FAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVW 634 (835)
Q Consensus 559 ~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 634 (835)
+.|+.. .+..+...+...|++++|..+|+... .+.| +...|..++.++.+.|++++|.+.+++. ...| ++..|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC---MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH---HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 344442 34455556667777777777777665 3356 4666777777788888888888777776 3444 34567
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 043955 635 CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNV 674 (835)
Q Consensus 635 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 674 (835)
..+..++...|+.+.|...++++++++|+++........+
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 7777888888999999999999999999888776655444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=95.99 Aligned_cols=115 Identities=7% Similarity=-0.027 Sum_probs=90.9
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~ 648 (835)
.+...|++++|.++|+...+ +.| +...|..++.+|.+.|++++|++.+++. .+.| ++.+|..+..++...|+.+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 45566777777777776653 356 3777888888888888888888888777 5556 4568888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHH--HHhcCCchHHHHHHH
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNV--FAASRKWKDVEQVRM 689 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 689 (835)
.|+..++++++++|+++..+..++.+ |...|++++|.+..+
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999998 889999999998865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.2e-06 Score=81.54 Aligned_cols=180 Identities=7% Similarity=-0.114 Sum_probs=140.3
Q ss_pred hcCChhhHHHHhhhCCC---CChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 043955 509 RCGALDIANKVFNCVQT---KDLILWTSM-------INANGLHGRGKVAIDLFYKMEAESFAPDHI-------------- 564 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-------------- 564 (835)
..++...|.+.|.++.+ .....|+.+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999998763 456789988 5777777777777777766654 455432
Q ss_pred --------HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 043955 565 --------TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTA----E 632 (835)
Q Consensus 565 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 632 (835)
....+..++...|++++|.+.|+.+. ...|+......+..++.+.|++++|++.++...-.|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12235566788999999999999776 34574326667778999999999999999977434433 3
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcC--CC-CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELD--PG-NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++-.|..++...|+.+.|+..++++.+.. |. .+.....++.++.+.|+.++|..+.+.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67788889999999999999999998654 54 445778999999999999999999888876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.6e-05 Score=79.12 Aligned_cols=192 Identities=10% Similarity=-0.051 Sum_probs=124.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 043955 429 SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYA 508 (835)
Q Consensus 429 ~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 508 (835)
.+...+..+...|++++|++.+.+..... |....... ....+..+...|.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~----------------------------~~~~~~~~~~~~~ 126 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQ----------------------------FLQWQYYVAAYVL 126 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHH----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHH----------------------------HHHHHHHHHHHHh
Confidence 44556677888899999999888877632 21110000 0011233556677
Q ss_pred hcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHh
Q 043955 509 RCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHGRGKVAIDLFYKMEAE-SFAPD-----HITFLALLYAC 573 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~Pd-----~~t~~~ll~a~ 573 (835)
..|++++|...|+...+ .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+..+|
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 88888888888775431 11 347888999999999999999999988731 01222 14677888889
Q ss_pred cccCcHHHHHHHHHHhhhc---CCCCCC-hhHHHHHHHHHhhcCCHHHH-HHHHHhCCCCCCHHHHHHHHHHHhhcCchh
Q 043955 574 SHSGLINEGKKFLEIMRCD---YQLDPW-PEHYACLVDLLGRANHLEEA-YQFVRSMQIEPTAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~---~~i~p~-~~~y~~lv~~l~r~g~~~eA-~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~ 648 (835)
...|++++|..+|+..... .+..+. ...|..++.++.+.|++++| ...+++. +..+...++..
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A------------l~~~~~~~~~~ 274 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA------------SFFFDILEMHA 274 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH------------HHHHHHTTCHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH------------HHHHHHhCcHh
Confidence 9999999999999876532 122221 56788888888899998888 6666653 22334556656
Q ss_pred HHHHHHHHHHhcCC
Q 043955 649 LGEIVAKKLLELDP 662 (835)
Q Consensus 649 ~a~~~~~~~~~l~p 662 (835)
.+......+-.++.
T Consensus 275 ~~~~~~~~~~~~~~ 288 (293)
T 2qfc_A 275 YKEALVNKISRLEH 288 (293)
T ss_dssp HHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHhh
Confidence 66555555555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.6e-05 Score=77.65 Aligned_cols=159 Identities=11% Similarity=-0.060 Sum_probs=120.5
Q ss_pred HHHHHHhcCChhhHHHHhhhCCCC---Ch-----h-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 043955 503 LVDMYARCGALDIANKVFNCVQTK---DL-----I-LWTSMINANGLHGRGKVAIDLFYKMEAESFA-PD----HITFLA 568 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~~~---~~-----~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd----~~t~~~ 568 (835)
.+..+.+.|++++|...++...+. +. . .+..+...|...|++++|+..|++....... +| ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999876532 11 1 2334677777788999999999999984322 23 225888
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcC----CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDY----QLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-------QIEPT-AEVWC 635 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~----~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~ 635 (835)
+..++...|++++|..+|+.+.+.+ +..|. ...|..++.+|.+.|++++|.+++++. ...+. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999877422 22232 457889999999999999999998876 12233 55788
Q ss_pred HHHHHHhhcCc-hhHHHHHHHHHHhcC
Q 043955 636 ALLGACRVHSN-KELGEIVAKKLLELD 661 (835)
Q Consensus 636 ~ll~a~~~~~~-~~~a~~~~~~~~~l~ 661 (835)
.+..++...|+ .+.|...+++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888888995 699999999988653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.5e-06 Score=71.09 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=76.1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC--CCCchHHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG--NPGNYVLISN 673 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~ 673 (835)
+...+..++.++.+.|++++|.+.+++. ...| +..+|..+..++...|+.+.|...++++++++|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3566677778888888888888888776 3334 4567878888888888888888888888888888 8888888888
Q ss_pred HHHhc-CCchHHHHHHHHHHc
Q 043955 674 VFAAS-RKWKDVEQVRMRMRG 693 (835)
Q Consensus 674 ~y~~~-g~~~~a~~~~~~m~~ 693 (835)
+|... |++++|.+..+...+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 88888 888888888776654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.6e-05 Score=78.42 Aligned_cols=146 Identities=12% Similarity=0.072 Sum_probs=77.8
Q ss_pred hhHHHHhhhCC---CCChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCc-HHHHHHHH
Q 043955 514 DIANKVFNCVQ---TKDLILWTSMINANGLHGR--GKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGL-INEGKKFL 586 (835)
Q Consensus 514 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~-~~~a~~~~ 586 (835)
+++...++.+. .++..+|+.-...+...|+ +++++++++++.+. .| |...|..-...+.+.|. ++++++++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444433 3455566665555555553 56666666666662 33 33445444444455555 46666666
Q ss_pred HHhhhcCCCCC-ChhHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc-----
Q 043955 587 EIMRCDYQLDP-WPEHYACLVDLLGRA--------------NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH----- 644 (835)
Q Consensus 587 ~~m~~~~~i~p-~~~~y~~lv~~l~r~--------------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~----- 644 (835)
+.+.. ..| +...|+....++.+. +.++++++++++. -..| |..+|+-+-+.....
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 66652 344 344444444444433 4466666666655 3344 455665554443333
Q ss_pred ------CchhHHHHHHHHHHhcCCCC
Q 043955 645 ------SNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 645 ------~~~~~a~~~~~~~~~l~p~~ 664 (835)
+-++.+...++++++++|++
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc
Confidence 23566666667777777766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-06 Score=90.49 Aligned_cols=128 Identities=10% Similarity=0.004 Sum_probs=80.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC
Q 043955 536 NANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRAN 613 (835)
Q Consensus 536 ~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g 613 (835)
..|.+.|++++|++.|++.++ ..|+ ..++..+..++...|++++|...|+... .+.| +...|..++.+|.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAI---ELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcC
Confidence 345566777777777777776 3554 4556666677777777777777777666 3456 3667777777777777
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHH--HhhcCchhHHHHHHH-----------HHHhcCCCCCCch
Q 043955 614 HLEEAYQFVRSM-QIEPT-AEVWCALLGA--CRVHSNKELGEIVAK-----------KLLELDPGNPGNY 668 (835)
Q Consensus 614 ~~~eA~~~~~~m-~~~p~-~~~~~~ll~a--~~~~~~~~~a~~~~~-----------~~~~l~p~~~~~~ 668 (835)
++++|++.++++ ...|+ ...|..+..+ +...|+.+.|+..++ ++++++|+..+.+
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 158 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPK 158 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccc
Confidence 777777777765 33332 2244444444 566677777777777 7777777765553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5e-06 Score=77.08 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=77.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 641 (835)
.+..+...+...|++++|..+|+... .+.| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQAL---SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44555555666666666666666555 2345 4666777777777788888888777766 4455 466888888889
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
...|+.+.|+..++++++++|+++..|...+-
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999887655543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=69.17 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=47.1
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+...+...|++++|..+|+.... ..| +...+..++.++.+.|++++|.+.+++. ...| +..+|..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444444455555555555554442 223 2444444444444555555555444443 2222 2334444444444
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
..|+.+.|...++++++++|+++..+..++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445555555555555555544444443333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=72.88 Aligned_cols=116 Identities=8% Similarity=-0.075 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLV 606 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 606 (835)
+...|..+...+...|++++|++.|++..+ ..|+... ....|..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 455666666666666777777777766665 3454200 023334444
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 607 DLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
.++.+.|++++|++.+++. ...| +...|..+..++...|+.+.|...++++++++|+++..+..+..+..
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 4455555555555554443 2233 34566666667777777777777888888888877666666655543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=76.48 Aligned_cols=152 Identities=10% Similarity=-0.042 Sum_probs=89.0
Q ss_pred hcCChhhHHH---HhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHH
Q 043955 509 RCGALDIANK---VFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAE----SFAPD-HITFLALLYACSHSGLIN 580 (835)
Q Consensus 509 k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~ 580 (835)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++.... |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 554433345567777777788888888888888777651 12222 234556666777777777
Q ss_pred HHHHHHHHhhhc---CCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH----HHHHHHHHHHhhcCch
Q 043955 581 EGKKFLEIMRCD---YQLDP--WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPTA----EVWCALLGACRVHSNK 647 (835)
Q Consensus 581 ~a~~~~~~m~~~---~~i~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~----~~~~~ll~a~~~~~~~ 647 (835)
+|..+|+..... .+-.| ....+..++.++.+.|++++|.+.+++. +-.++. .++..+...+...|+.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777765533 22122 1344666677777777777777666554 111111 1234455556666666
Q ss_pred hHHHHHHHHHHhc
Q 043955 648 ELGEIVAKKLLEL 660 (835)
Q Consensus 648 ~~a~~~~~~~~~l 660 (835)
+.|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=6.1e-07 Score=86.43 Aligned_cols=166 Identities=9% Similarity=-0.051 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSH 575 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 575 (835)
+.+..+......|.++.|.+.|+..... ....|..+...+...|++++|+..|++... ..|+...+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~------ 77 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ------ 77 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH------
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh------
Confidence 3455666677778888888888754432 455788888888889999999999999887 33432111000
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIV 653 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~ 653 (835)
..++-. ..+ ....|..+..++.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|...
T Consensus 78 --~~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 78 --ILLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp --HHHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --hHHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 000000 000 1355667778888888888888888776 4445 456788888888899999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 654 AKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 654 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
++++++++|+++..+..++.++...|+.+++.
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777766
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=69.35 Aligned_cols=92 Identities=17% Similarity=0.080 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLV 606 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv 606 (835)
..|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+++.... +.| +...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 34555555555666666666666665552 33 333444455555555666666666655542 234 345555555
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 043955 607 DLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m 625 (835)
.++.+.|++++|.+.+++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 5666666666666655554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.7e-06 Score=73.21 Aligned_cols=107 Identities=10% Similarity=-0.098 Sum_probs=61.7
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+...+...|++++|..+|+... .+.| +...|..++.++.+.|++++|++.+++. .+.| ++..|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMI---KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3334444445555555555555444 2234 3455555666666666666666666554 3344 3446666666777
Q ss_pred hcCchhHHHHHHHHHHhcC------CCCCCchHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELD------PGNPGNYVLISNVF 675 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 675 (835)
..|+.+.|...++++++++ |+++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 7777777777777777777 66655555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.1e-06 Score=77.04 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
+...|..++..+.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4677888999999999999999999987 5556 6678999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHc
Q 043955 676 AASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~ 693 (835)
...|++++|.+..+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 999999999999876654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.5e-06 Score=73.62 Aligned_cols=93 Identities=11% Similarity=-0.003 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC-------chHH
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG-------NYVL 670 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-------~~~~ 670 (835)
..+..++..+.+.|++++|++.+++. .+.| ++.+|..+..++...|+.+.|+..++++++++|+++. .|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999988877 5566 4668989999999999999999999999999998876 4667
Q ss_pred HHHHHHhcCCchHHHHHHHHHH
Q 043955 671 ISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
++++|...|++++|.+..+..-
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999876543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.3e-06 Score=75.36 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM--------QIEPTAE-VW----CALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~~-~~----~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.|..+..++.+.|++++|++.+++. ++.|+.. .| ..+..++...|+.+.|...++++++++|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666555544 3488655 88 899999999999999999999999999999888
Q ss_pred hHHHHH
Q 043955 668 YVLISN 673 (835)
Q Consensus 668 ~~~l~~ 673 (835)
+--+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 755543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-05 Score=75.66 Aligned_cols=153 Identities=9% Similarity=-0.032 Sum_probs=112.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhc---CCCCC-ChhHHHHHHHHHhhcCC
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCD---YQLDP-WPEHYACLVDLLGRANH 614 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~i~p-~~~~y~~lv~~l~r~g~ 614 (835)
...|++++|.+.++..... ......++..+...+...|++++|..+|+..... .+..| ....+..+..++...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555431 1123456788888899999999999999877642 23344 36778899999999999
Q ss_pred HHHHHHHHHhC-CC---CC-C----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC------chHHHHHHHHhcC
Q 043955 615 LEEAYQFVRSM-QI---EP-T----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG------NYVLISNVFAASR 679 (835)
Q Consensus 615 ~~eA~~~~~~m-~~---~p-~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g 679 (835)
+++|.+.+++. .+ .| + ..++..+...+...|+.+.|+..+++++++.+.... .+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999988776 11 22 3 235777778888999999999999999977543222 2578999999999
Q ss_pred CchHHHHHHHHHH
Q 043955 680 KWKDVEQVRMRMR 692 (835)
Q Consensus 680 ~~~~a~~~~~~m~ 692 (835)
++++|.+..+...
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988765443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.7e-06 Score=75.26 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+|..+..++...|+.+.|...++++++++|+++.+|..++.+|...|++++|....+...+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 46777778888889999999999999999999999999999999999999999888765554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=71.56 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
+...|..++..+...|++++|.+.+++. ...| ++.+|..+...+...|+.+.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4667777888888888888888887766 3444 4567888888888888888888888888888888888888888888
Q ss_pred HhcCCchHHHHHHHHHHc
Q 043955 676 AASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~ 693 (835)
...|++++|.+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888888888887766554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.2e-06 Score=81.27 Aligned_cols=144 Identities=11% Similarity=-0.006 Sum_probs=75.8
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CCh----------------hH
Q 043955 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDL----------------IL 530 (835)
Q Consensus 470 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~----------------~~ 530 (835)
.....++.++.+++.+....... ......+..+...|.+.|++++|...|++... .+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 34445566666666655332211 11234566788889999999999999987652 232 55
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
|..+...|...|++++|+..|++.++ +.|+ ...+..+..++...|++++|..+|+... .+.| +...+..+..+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAA---SLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH---HHCCCcHHHHHHHHHH
Confidence 66666666666666666666666665 2343 3344455555555555666655555544 2234 24444444444
Q ss_pred HhhcCCHHHHH
Q 043955 609 LGRANHLEEAY 619 (835)
Q Consensus 609 l~r~g~~~eA~ 619 (835)
+.+.|+.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=69.44 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
+...|..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|+..++++++++|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4678889999999999999999999987 5666 6678989999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHc
Q 043955 676 AASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~ 693 (835)
...|++++|.+..+...+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999876654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-05 Score=69.67 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
+...+..++..+.+.|++++|.+.+++. ...|+ ..+|..+..++...|+.+.|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4677888889999999999999999887 66787 568888888899999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHc
Q 043955 673 NVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 673 ~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+|...|++++|.+..+...+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999876654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.3e-05 Score=71.21 Aligned_cols=128 Identities=9% Similarity=-0.048 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHH
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACL 605 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~l 605 (835)
...|..+...+...|++++|+..|++..+ ..| +..++..+..++...|++++|..+|+...+ +.| +...|..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~ 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 34677777778888888888888888877 344 455677777777888888888888887763 345 46778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHhhcCchhHHHHHHHHHHhc
Q 043955 606 VDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCAL--LGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~l--l~a~~~~~~~~~a~~~~~~~~~l 660 (835)
+.++.+.|++++|.+.++++ ...| +...|..+ ...+...|+.+.|...+++..++
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888888776 3334 34444333 33355668888888777766543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.6e-05 Score=66.70 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...|..++..+.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999887 3344 56789899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHc
Q 043955 677 ASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 677 ~~g~~~~a~~~~~~m~~ 693 (835)
..|++++|.+..+.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999877664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.7e-05 Score=85.66 Aligned_cols=168 Identities=8% Similarity=-0.026 Sum_probs=139.7
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccc
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGR----------GKVAIDLFYKMEAESFAPDH-ITFLALLYACSHS 576 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~ 576 (835)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+ ..|+. .+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467788888776 3466789988888887777 8999999999998 56654 5788777888888
Q ss_pred C--cHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc------
Q 043955 577 G--LINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRAN-HLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH------ 644 (835)
Q Consensus 577 g--~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~------ 644 (835)
| +++++.++++.+. .++| +...|+.-..++.+.| .+++|+++++++ ...| |...|+....+....
T Consensus 121 ~~~~~~~el~~~~k~l---~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFL---EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHH---hhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 7899999999998 4567 5777888888889999 899999999998 6667 677998888776552
Q ss_pred --------CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 645 --------SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 645 --------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
+.++.+...++++++++|+|..+|.-+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=83.93 Aligned_cols=118 Identities=11% Similarity=-0.017 Sum_probs=80.9
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-C---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT--K-D---------------LILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
+...+..+...|.+.|++++|...|++... | + ...|..+...|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 456788899999999999999999987652 2 3 36777777777777777777777777776
Q ss_pred CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 043955 558 SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 558 g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA 618 (835)
+.|+ ...+..+..++...|++++|...|+... .+.| +...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL---QLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3453 3455666666666667777766666655 3345 345555555566666655555
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1e-05 Score=70.62 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=61.2
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH 644 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~ 644 (835)
.+...+...|++++|...|+... .+.| +...|..++.++.+.|++++|++.+++. .+.| +...|..|..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVC---QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34445556666666666666655 3355 4666667777777777777777777666 4455 455777777778888
Q ss_pred CchhHHHHHHHHHHhcCCCCC
Q 043955 645 SNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~ 665 (835)
|+.+.|+..++++++++|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00017 Score=74.28 Aligned_cols=157 Identities=10% Similarity=0.062 Sum_probs=96.3
Q ss_pred hhhHHHHhhhCC---CCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccc-----------
Q 043955 513 LDIANKVFNCVQ---TKDLILWTSMINANGLHGR-GKVAIDLFYKMEAESFAPD-HITFLALLYACSHS----------- 576 (835)
Q Consensus 513 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~----------- 576 (835)
++++...++.+. .+|-.+|+--.-.+...|. .+++++.++++++. .|+ ...|........+.
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 445555555443 3455566666666666665 46677777777663 343 33344333332222
Q ss_pred ---CcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 043955 577 ---GLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRA-----------NHLEEAYQFVRSM-QIEPTAEVWCALLGA 640 (835)
Q Consensus 577 ---g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~-----------g~~~eA~~~~~~m-~~~p~~~~~~~ll~a 640 (835)
+.+++++++++... .+.| +...|+-+--++.+. +.++++++.++++ .++||. .|.-+-.+
T Consensus 204 ~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~ 279 (331)
T 3dss_A 204 LPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTII 279 (331)
T ss_dssp CCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHH
Confidence 45677777777665 3456 455555454555444 5688999999888 677875 46433222
Q ss_pred H-----hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 641 C-----RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 641 ~-----~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
. ...+..+.....+.++.++||-..+.|.-|.+-+
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 2 2356777888999999999999888887765543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=71.90 Aligned_cols=98 Identities=8% Similarity=-0.091 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 043955 563 HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLG 639 (835)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 639 (835)
...+..+...+...|++++|..+|+.... +.| +...|..++.++.+.|++++|.+.+++. ...| ++.+|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34455555555555666666655555442 234 3555666666666667777766666655 3334 4556777777
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCC
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
++...|+.+.|+..++++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777778888888888888888777
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=3.6e-05 Score=67.41 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYAC 604 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~ 604 (835)
+...|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+++.... +.| +...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC---IDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---cCccCHHHHHH
Confidence 3456777777788888888888888888773 44 455677777777888888888888887764 345 4677788
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNK 647 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~ 647 (835)
++.++.+.|++++|.+.+++. ...| +...|..+..++...|+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888776 3444 455676666666655553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=86.51 Aligned_cols=156 Identities=11% Similarity=0.049 Sum_probs=113.3
Q ss_pred hcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 043955 509 RCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKF 585 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 585 (835)
..+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~- 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA- 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-
Confidence 34566667766655442 2455788888888899999999999998887 33432110 0 011110
Q ss_pred HHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 586 LEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 586 ~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
. .| ....|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|+.+.|+..++++++++|
T Consensus 312 ~---------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 312 S---------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp H---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred H---------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 1 11 2466788888999999999999988887 4555 466888899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhcCCchHHHHH
Q 043955 663 GNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 663 ~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
+++.++..|+.+|...|+++++.+-
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=84.37 Aligned_cols=146 Identities=8% Similarity=-0.058 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
...|..+...+.+.|++++|+..|++.+. ..|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34677788888889999999999999887 5676552 234445555443321 235677888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH-hcCCchHH
Q 043955 608 LLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA-ASRKWKDV 684 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~~~a 684 (835)
+|.+.|++++|++.+++. .+.| +...|..+..++...|+.+.|+..++++++++|+++..+..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 4455 45678888888888888888888888888888888888888888744 45566666
Q ss_pred HHHHHHHHc
Q 043955 685 EQVRMRMRG 693 (835)
Q Consensus 685 ~~~~~~m~~ 693 (835)
.+..+.|-+
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=81.17 Aligned_cols=83 Identities=10% Similarity=-0.087 Sum_probs=57.3
Q ss_pred ccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHH
Q 043955 373 SGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALEL 449 (835)
Q Consensus 373 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l 449 (835)
...|+++.|...+..+++..+.+..++..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3334444444444444444444555777778888888888888888887664 3556777788888888888888888
Q ss_pred HHHHhh
Q 043955 450 FYLMNE 455 (835)
Q Consensus 450 f~~m~~ 455 (835)
|++...
T Consensus 95 ~~~al~ 100 (281)
T 2c2l_A 95 LQRAYS 100 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888776
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00063 Score=70.27 Aligned_cols=222 Identities=14% Similarity=0.043 Sum_probs=128.9
Q ss_pred hcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCC-ChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHH
Q 043955 408 KCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNG-LANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKE 483 (835)
Q Consensus 408 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 483 (835)
+.+..++|.++++.+.. .+...|+.--..+...| .++++++++..+.. ..|...+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~------------------- 124 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQ------------------- 124 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHH-------------------
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHH-------------------
Confidence 33444556666665543 23445665555555556 47777777777765 2343322
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhc-C-ChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChH--------HHHHH
Q 043955 484 LNGFIIRKGFNLEGSVASSLVDMYARC-G-ALDIANKVFNCVQT---KDLILWTSMINANGLHGRGK--------VAIDL 550 (835)
Q Consensus 484 i~~~~~~~g~~~~~~~~~~li~~y~k~-g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~Al~l 550 (835)
+++.-...+.+. + +++++++.++.+.+ +|..+|+--.-.+.+.|..+ ++++.
T Consensus 125 ---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 125 ---------------VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp ---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 222222222232 3 55666666666653 35566766655555555555 78888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhcccCc-------HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC-------
Q 043955 551 FYKMEAESFAP-DHITFLALLYACSHSGL-------INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH------- 614 (835)
Q Consensus 551 ~~~m~~~g~~P-d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~------- 614 (835)
++++.+. .| |...|........+.|. +++++++++.+. .+.| +...|.-+-.++.+.|+
T Consensus 190 ~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI---~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 190 CNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI---HLIPHNVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 8888773 44 44556666666666654 677777777666 4466 45666666666666554
Q ss_pred -------------HHHHHHHHHhC-CC-------CCCHHHHHHHHHHHhhcCchhHHHHHHHHHH-hcCCCCCCchHH
Q 043955 615 -------------LEEAYQFVRSM-QI-------EPTAEVWCALLGACRVHSNKELGEIVAKKLL-ELDPGNPGNYVL 670 (835)
Q Consensus 615 -------------~~eA~~~~~~m-~~-------~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-~l~p~~~~~~~~ 670 (835)
+.+..++...+ +. .+.+..+..|...+...|+.+.|..+++.+. +.||-...++.-
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 34455555555 21 2456677788888888888888888888886 778865555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.1e-05 Score=65.73 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=62.4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP---TAEVWCALLGA 640 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~a 640 (835)
+..+...+...|++++|..+|+...+. .| +...|..++.++.+.|++++|.+.+++. ...| +..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 333444445555555555555544422 23 3455666667777777777777776665 3334 35677778888
Q ss_pred Hhhc-CchhHHHHHHHHHHhcCCCCC
Q 043955 641 CRVH-SNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 641 ~~~~-~~~~~a~~~~~~~~~l~p~~~ 665 (835)
+... |+.+.|...++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.1e-05 Score=83.59 Aligned_cols=137 Identities=12% Similarity=-0.027 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVD 607 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~ 607 (835)
..|..+...|.+.|++++|++.|++.++. .|+.. .....+... .+.| ....|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~-----------------~~~~~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR-----------------AAAEDADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH-----------------HHSCHHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc-----------------cccChHHHH---HHHHHHHHHHHHHHH
Confidence 45777788888888888888888887751 11110 000011111 2345 4678889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 608 LLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
+|.+.|++++|++.+++. ...| ++..|..+..++...|+.+.|+..++++++++|+++..+..|+.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 6677 46688888899999999999999999999999999999999999999988888776
Q ss_pred HH
Q 043955 686 QV 687 (835)
Q Consensus 686 ~~ 687 (835)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-05 Score=68.83 Aligned_cols=91 Identities=13% Similarity=-0.015 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--------hh
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--------PE 600 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--------~~ 600 (835)
+|..+...|.+.|++++|++.|++.++ +.|+. ..|..+..++...|++++|+..|+...+ +.|+ ..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHHHH
Confidence 455566666666666667666666666 45543 3455566666666666666666665542 2221 12
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.|..++.++...|++++|++.+++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.92 E-value=2e-05 Score=71.05 Aligned_cols=92 Identities=13% Similarity=-0.052 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHhhcCchhHHHHHHHHHHhc-------
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPT-------------AEVWCALLGACRVHSNKELGEIVAKKLLEL------- 660 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-------------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l------- 660 (835)
+...+..+...|++++|++.+++. .+.|+ +..|..+..++...|+.+.|...+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334555566666666666666655 22222 338999999999999999999999999999
Q ss_pred CCCCCCch----HHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 661 DPGNPGNY----VLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 661 ~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+|+++..| ..++.+|...|++++|.+..++.-+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999998776543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.8e-05 Score=67.45 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=51.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC---CCchHHHHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPTA----EVWCALLGACRVHSNKELGEIVAKKLLELDPGN---PGNYVLISNVFA 676 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~ 676 (835)
++..+.+.|++++|.+.+++. ...|+. .+|..+..++...|+.+.|...++++++.+|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445555566666666655554 112211 245555555666666666666666666666666 455666666666
Q ss_pred hcCCchHHHHHHHHHH
Q 043955 677 ASRKWKDVEQVRMRMR 692 (835)
Q Consensus 677 ~~g~~~~a~~~~~~m~ 692 (835)
..|++++|.+..+...
T Consensus 88 ~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666655444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=1.9e-05 Score=69.23 Aligned_cols=113 Identities=10% Similarity=-0.075 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
..|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+|+...... |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE--------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc---------
Confidence 34555555555666666666666665552 22 23334444444445555555555554443211 10
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 608 LLGRANHLEEAYQFVRSMQIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
..++ ..+|..+..++...|+.+.|...+++++++.| ++.....+..++
T Consensus 71 -------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 71 -------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 0111 33455555556666666666666666666666 344444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.87 E-value=1e-05 Score=70.06 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=49.7
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
.|++++|..+|+...+...-.| +...|..++.+|.+.|++++|++.+++. ...| ++.+|..+..++...|+.+.|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555554442100023 2455555666666666666666666555 3334 34456666666666677777777
Q ss_pred HHHHHHhcCCCCCCc
Q 043955 653 VAKKLLELDPGNPGN 667 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~ 667 (835)
.+++++++.|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 777777777766544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.3e-06 Score=70.97 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 611 RANHLEEAYQFVRSM-QI---EPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~---~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
..|++++|++.+++. .. .|+ ..+|..|..++...|+.+.|+..++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 568899999999887 55 364 4488889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 043955 686 QVRMRMRG 693 (835)
Q Consensus 686 ~~~~~m~~ 693 (835)
+..+...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98765543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.5e-05 Score=73.64 Aligned_cols=122 Identities=17% Similarity=0.009 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-Chh
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAES------FAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPE 600 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~ 600 (835)
...|......+.+.|++++|+..|++.+..- -.|+...+ . .+.| ...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~------~~~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------V------ELDRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------H------HHHHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------H------HHHHHHHH
Confidence 3466777777777777777777777776520 01111000 0 0123 356
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC-CchHHHHHHH
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP-GNYVLISNVF 675 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y 675 (835)
.|..+..++.+.|++++|+..+++. .+.| ++..|..+..++...|+.+.|...++++++++|+++ .....|..+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 7788888888999999999888776 4556 456888888899999999999999999999999987 4455555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.84 E-value=7.2e-05 Score=65.44 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC-------CCchH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN-------PGNYV 669 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-------~~~~~ 669 (835)
...|..++..+.+.|++++|.+.+++. ...| ++.+|..+...+...|+.+.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677888888889999998888876 3334 56678888888889999999999999999999877 77889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHc
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.++.+|...|++++|.+..+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999877665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00015 Score=79.12 Aligned_cols=186 Identities=6% Similarity=-0.101 Sum_probs=131.6
Q ss_pred HHHhcCChhhHHHHhhhCCCC-----C---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH
Q 043955 506 MYARCGALDIANKVFNCVQTK-----D---------------LILWTSMINANGLHGRGKVAIDLFYKMEAE-SFAPDHI 564 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~Pd~~ 564 (835)
.+.+.|++++|.+.|..+.+. + ..++..++..|...|++++|++.+.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345678888888877655421 1 124778899999999999999999887652 1122222
Q ss_pred ----HHHHHHHHhcccCcHHHHHHHHHHhhh---cCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC
Q 043955 565 ----TFLALLYACSHSGLINEGKKFLEIMRC---DYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-----Q--IEP 629 (835)
Q Consensus 565 ----t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~--~~p 629 (835)
+...+...+...|..+++..+++.... ..+..+ ....+..++.++...|++++|.+++++. . -+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 233334455677899999998876543 223333 3567888999999999999999998875 1 123
Q ss_pred C-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC-------CchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 630 T-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP-------GNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 630 ~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-------~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
. ..++..+...|...||.+.|...+++++...|..+ ..+..++.+|...|+|++|.+.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 33677778889999999999999999987754322 34667788899999999998765433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=66.68 Aligned_cols=89 Identities=9% Similarity=-0.116 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC------CCchH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN------PGNYV 669 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~ 669 (835)
+.+.+..++..+.+.|++++|.+.+++. ...| ++.+|..+..++...|+.+.|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888899999999999988877 4455 56788888889999999999999999999999998 77788
Q ss_pred HHHHHHHhcCCchHHHH
Q 043955 670 LISNVFAASRKWKDVEQ 686 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~ 686 (835)
.++.+|...|++++|.+
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 88888888887777644
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.1e-05 Score=81.35 Aligned_cols=112 Identities=6% Similarity=-0.107 Sum_probs=89.7
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVH 644 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 644 (835)
.+..+...+...|++++|...|+.... +.|+.. .+...|+.+++...+.. .+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 455677788899999999999998763 345422 23445666666655432 3788888889999
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+.+.|+..++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00015 Score=63.44 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=57.3
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcC
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHS 645 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~ 645 (835)
.+...|++++|...|+...+...-.|. ...+..++.++.+.|++++|.+.+++. ...|+ +.++..+..++...|
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 344555555555555555432211111 135555666666666666666666555 22232 345666666677778
Q ss_pred chhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 646 NKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
+.+.|...++++++..|+++.....+
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 91 KNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888888888888887765444333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00013 Score=66.59 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcC---CCCC-Chh
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFA-PDH----ITFLALLYACSHSGLINEGKKFLEIMRCDY---QLDP-WPE 600 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p-~~~ 600 (835)
+|..+...|...|++++|+..|++..+.... ++. .++..+...+...|++++|..+|+...... +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555555566666666666666665542100 111 234444455555566666665555443211 1001 123
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
.+..++.++...|++++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344445555555555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=7.8e-05 Score=68.04 Aligned_cols=129 Identities=12% Similarity=-0.060 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----H
Q 043955 564 ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW----PEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----A 631 (835)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~ 631 (835)
.++..+...+...|++++|..+|+.......-.++ ...+..++.++...|++++|.+.+++. +-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667777888999999999999877643211121 357888999999999999999998876 11122 3
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC------CCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGN------PGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.++..+...+...|+.+.|...+++++++.+.. +..+..++.+|...|++++|.+..+...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 467777788899999999999999999874432 3467899999999999999998876543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.8e-05 Score=80.99 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=88.5
Q ss_pred hcccCcHHHHHHHHHHhhhc----CC-CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 043955 573 CSHSGLINEGKKFLEIMRCD----YQ-LDPW-PEHYACLVDLLGRANHLEEAYQFVRSM---------QIEPTAE-VWCA 636 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~----~~-i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ 636 (835)
+...|++++|..+++..... +| -.|+ ..+++.|+.+|...|++++|+.++++. |--|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777666554322 11 1232 456777778888888888887777664 3344443 6778
Q ss_pred HHHHHhhcCchhHHHHHHHHHHh-----cCCCCCCc---hHHHHHHHHhcCCchHHHHHHHHHHcCCCccCC
Q 043955 637 LLGACRVHSNKELGEIVAKKLLE-----LDPGNPGN---YVLISNVFAASRKWKDVEQVRMRMRGSGLKKTP 700 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~ 700 (835)
|...+..+|+.+.|+..++++++ +.|++|.+ +.+|...+...|++++|..+...++++..+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888875 46776544 457788899999999999999999886544433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=59.05 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...+..+...+.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 566777888888889999999888776 3445 56688888888999999999999999999999999999999999887
Q ss_pred hcC
Q 043955 677 ASR 679 (835)
Q Consensus 677 ~~g 679 (835)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=2.5e-05 Score=70.25 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=34.1
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc-----------CchhHHHHHHHHHHhcCCCCCCc
Q 043955 616 EEAYQFVRSM-QIEPT-AEVWCALLGACRVH-----------SNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~-----------~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
++|+..+++. .+.|+ ..+|..|..++... |+++.|+..++++++++|+++.+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 3555555544 44443 33555555555544 58999999999999999987533
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00019 Score=76.25 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+|..+..++...|+.+.|+..++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 457888889999999999999999999999999999999999999999999999998876654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0003 Score=77.22 Aligned_cols=118 Identities=10% Similarity=-0.012 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCC---CC---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQT---KD---------------LILWTSMINANGLHGRGKVAIDLFYKMEAES 558 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~---------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g 558 (835)
...+..+...|.+.|++++|...|++..+ .+ ...|+.+..+|.+.|++++|+..|++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-- 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 45677889999999999999999997652 23 35666777777777777777777777766
Q ss_pred CCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHH
Q 043955 559 FAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 559 ~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
+.|+ ...+..+..++.+.|++++|+..|+... .+.| +...+..+..++.+.|+.++|.
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 3455556666666666666666666555 4455 3455555566666555555554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=5.2e-05 Score=68.13 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc----------hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 611 RANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN----------KELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
|.+++++|.+.+++. ...| ++..|..+..+....++ ++.|+..++++++++|+++.+|..|+++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444555555555544 3333 33344444444444433 57999999999999999999999999999988
Q ss_pred C-----------CchHHHHHHHHHHc
Q 043955 679 R-----------KWKDVEQVRMRMRG 693 (835)
Q Consensus 679 g-----------~~~~a~~~~~~m~~ 693 (835)
| ++++|.+..++.-+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH
Confidence 5 89999998776655
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00021 Score=61.23 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 618 AYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 618 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|++.+++. ...| ++..|..+...+...|+.+.|+..++++++++|+++..|..++.+|...|++++|....+...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 3445 4557777777788888888888888888888888888888888888888888888887765543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0011 Score=72.12 Aligned_cols=157 Identities=10% Similarity=-0.034 Sum_probs=118.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh
Q 043955 536 NANGLHGRGKVAIDLFYKMEAESFAPDH----------------ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599 (835)
Q Consensus 536 ~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 599 (835)
..+...|++++|++.|.++.+..-.... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4466789999999999999884322111 236778889999999999999999877544333332
Q ss_pred ----hHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcC------
Q 043955 600 ----EHYACLVDLLGRANHLEEAYQFVRSM-------QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELD------ 661 (835)
Q Consensus 600 ----~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~------ 661 (835)
..++.+..++...|.+++|.++++.. ...+. ..++..|...+...|+.+.|...+++++..-
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 34555666777889999999888765 23333 4477888889999999999999999987652
Q ss_pred CCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 662 PGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 662 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
|.....|..++.+|...|+|++|....+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2234578899999999999999998876554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00031 Score=58.46 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+|..+..++...|+.+.|+..++++++++|+++.+|..|+.+|...|++++|.+..+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5668888888899999999999999999999999999999999999999999999988765543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00053 Score=56.00 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHhhcCc---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 629 PTAEVWCALLGACRVHSN---KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 629 p~~~~~~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
+|+.+|..+..+....++ .+.|...++++++++|+++.+..+|++++...|+|++|...++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788888887755544 7999999999999999999999999999999999999999999888754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00085 Score=75.38 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=110.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcccCc----------HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 043955 542 GRGKVAIDLFYKMEAESFAPDHIT-FLALLYACSHSGL----------INEGKKFLEIMRCDYQLDP-WPEHYACLVDLL 609 (835)
Q Consensus 542 g~~~~Al~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l 609 (835)
...++|++.+++++. +.|+..| |+.--.++.+.|. ++++..+++.+.+ ..| +...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 356789999999999 7888765 5555555555666 8999999999884 567 577788888889
Q ss_pred hhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-chhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 610 GRAN--HLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS-NKELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 610 ~r~g--~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
.+.| ++++|+++++++ ...| +..+|+.-..+....| ..+.+...++++++.+|.|..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999 789999999999 5566 6779999888888888 889999999999999999999999999998875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00031 Score=59.38 Aligned_cols=94 Identities=10% Similarity=-0.020 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-------
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW------- 598 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~------- 598 (835)
+...|..+...+...|++++|++.|++.++ ..|+ ...+..+..++...|++++|...|+... .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHH
Confidence 345677777777788888888888888777 3453 4556667777777888888888777766 45564
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
...+..+..++...|+.++|.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 344555555555555555555544444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00054 Score=58.60 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=50.5
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 582 GKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
+...|+... ...| +...+..++.++.+.|++++|++.+++. ...| +...|..|..++...|+.+.|+..+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444454444 3445 3556666666667777777777666665 3334 34467677777777777777777777777
Q ss_pred hcCCCC
Q 043955 659 ELDPGN 664 (835)
Q Consensus 659 ~l~p~~ 664 (835)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 777643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0026 Score=69.69 Aligned_cols=122 Identities=13% Similarity=-0.038 Sum_probs=75.9
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhh----cCC-CCCC-hhHHHH
Q 043955 538 NGLHGRGKVAIDLFYKMEAE---SFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRC----DYQ-LDPW-PEHYAC 604 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~---g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~-i~p~-~~~y~~ 604 (835)
+...|++++|+.++++.++. -+-|++ .+++.|..+|...|++++|..+++.... .+| -.|+ ...|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566677777666665542 122332 3566677777777777777777765542 223 2233 567888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---------CCCCCHHHHHHHHHH-HhhcCchhHHHHHHHHHHh
Q 043955 605 LVDLLGRANHLEEAYQFVRSM---------QIEPTAEVWCALLGA-CRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~~~~~ll~a-~~~~~~~~~a~~~~~~~~~ 659 (835)
|+.+|...|++++|+.+++++ |--|+......++.. ....+..+.|+..++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 333444433344444 4466778888888877653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0073 Score=62.24 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhc----ccC----cHHHHHHHHHHh
Q 043955 524 QTKDLILWTSMINANGL--HG---RGKVAIDLFYKMEAESFAPDHI-TFLALLYACS----HSG----LINEGKKFLEIM 589 (835)
Q Consensus 524 ~~~~~~~~~~li~~~~~--~g---~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~----~~g----~~~~a~~~~~~m 589 (835)
...|..+|...+.|... .+ ...+|+.+|++.++ ..|+.. .+..+..++. ..+ ........+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34577888888776543 23 34789999999998 688853 3333333222 000 000111111111
Q ss_pred hhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 590 RCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 590 ~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
. .....| ++..|..+.-.+.-.|++++|...++++ .+.|+...|..+.......|+.+.|...+++++.++|..
T Consensus 268 ~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 V-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp H-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred H-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1 111222 3444444444444445555555555554 233444444333344444455555555555555555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00042 Score=72.49 Aligned_cols=431 Identities=11% Similarity=0.098 Sum_probs=251.3
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043955 125 VVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAM 204 (835)
Q Consensus 125 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~ 204 (835)
...|..|-.+....+...+|++-|-+. -|+..|..++.++.+.|.++.-...+....+..- ++.+-+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 456777888887777777776544221 2556677788888888887777777766665533 34445788888
Q ss_pred HHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHH
Q 043955 205 YARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELH 284 (835)
Q Consensus 205 y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 284 (835)
|++.+++.+-++++. .||+.--..+..-|...|.++.|.-+|.
T Consensus 126 yAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys---------------------------------- 168 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYN---------------------------------- 168 (624)
T ss_dssp HHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGG----------------------------------
T ss_pred HHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHH----------------------------------
Confidence 998888765544432 3566666666666666666666555543
Q ss_pred HHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 043955 285 AYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMI 364 (835)
Q Consensus 285 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 364 (835)
++.-|..|...+.+.|++..|...-+ ...++.+|..+-.+|...+.+.-|--.--.+. +.||.
T Consensus 169 ----------~isN~akLAstLV~L~~yq~AVdaAr--KAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade-- 231 (624)
T 3lvg_A 169 ----------NVSNFGRLASTLVHLGEYQAAVDGAR--KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE-- 231 (624)
T ss_dssp ----------GSCCCTTTSSSSSSCSGGGSSTTTTT--TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--
T ss_pred ----------hCccHHHHHHHHHHHHHHHHHHHHHH--hcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--
Confidence 33345566666777777666654322 23478899999999999999887755544443 23332
Q ss_pred HHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC----CC-------CchhHHHH
Q 043955 365 IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE----SK-------DVVSWTSM 433 (835)
Q Consensus 365 ~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~-------~~~~~~~l 433 (835)
+..++..|...|.+++-..+++..+...-....+++-|.-.|+|-. .++-.+-++..- -| ....|.-+
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~El 310 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 310 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHH
Confidence 3345667888899998888887776333334559999999999873 333333332221 12 45678888
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH--------------hCCCCchhH
Q 043955 434 ISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR--------------KGFNLEGSV 499 (835)
Q Consensus 434 i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--------------~g~~~~~~~ 499 (835)
+-.|.+..+++.|... |... .|+...-..+.....+.++++.--+....-++ ..+++
T Consensus 311 vfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh---- 381 (624)
T 3lvg_A 311 VFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDH---- 381 (624)
T ss_dssp HHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCS----
T ss_pred HHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCCh----
Confidence 8888888888877542 3321 12222222223333333333322222111111 11111
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQTKDLILWTS-MINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGL 578 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~-li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 578 (835)
+-.+.++.|.|++.-....+......|...-|- +-..|....+++ +...-+.+|-.-..
T Consensus 382 -~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~-------------------~LR~SId~ydNFD~ 441 (624)
T 3lvg_A 382 -TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ-------------------ALRTSIDAYDNFDN 441 (624)
T ss_dssp -TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH-------------------HHHHTTSSCCCSCT
T ss_pred -HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH-------------------HHHHHHHHhccccH
Confidence 134566777777777777777777766655543 333444444443 22222222333333
Q ss_pred HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 579 INEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
++-|.++ . + .+-.+.-..-..+|.|.+++++|.++.++=.+-.|+. ......|+.+.++...+-.+
T Consensus 442 i~LA~rL----E-k---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAi------etAa~S~~~elaeeLL~yFv 507 (624)
T 3lvg_A 442 ISLAQRL----E-K---HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAM------QYASESKDTELAEELLQWFL 507 (624)
T ss_dssp THHHHHH----H-T---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGG------TTTTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHH----h-h---CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHH------HHHHHcCCHHHHHHHHHHHH
Confidence 3333332 1 1 1223333444567888888888887766544333332 23445677777777776666
Q ss_pred hcC
Q 043955 659 ELD 661 (835)
Q Consensus 659 ~l~ 661 (835)
+..
T Consensus 508 ~~g 510 (624)
T 3lvg_A 508 QEE 510 (624)
T ss_dssp HHC
T ss_pred HcC
Confidence 543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00093 Score=72.08 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhc-----CCCCC---CchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeE
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLEL-----DPGNP---GNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSW 704 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~ 704 (835)
+++.|..+|...|+.+.|+..+++++++ .|++| ..|..|+.+|..+|++++|..+.++..+-- ++.-
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~l---- 405 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM-RVTH---- 405 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT----
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHhc----
Confidence 4566666666666666666666666543 34443 346677888888888888887765543310 0111
Q ss_pred EEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 705 IEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 705 i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
...||...+++..|++...+|
T Consensus 406 -------------G~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 406 -------------GREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp -------------CTTSHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCChHHHHHHHHHHHHHHHH
Confidence 147999999999999887777
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0078 Score=53.31 Aligned_cols=112 Identities=13% Similarity=-0.078 Sum_probs=72.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLE 616 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~ 616 (835)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -++..+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346778888888888876 44444 555666777778888888766533 245666667777766 66777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh----cCchhHHHHHHHHHHhcC
Q 043955 617 EAYQFVRSMQIEPTAEVWCALLGACRV----HSNKELGEIVAKKLLELD 661 (835)
Q Consensus 617 eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~ 661 (835)
+|.+.+++.--.-++..+..|...+.. .+|.+.|...++++.++.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777766222445555555555555 566677777666666653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0044 Score=63.89 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHhc--ccC---cHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHH----hhcC-------CHHHHHHHH
Q 043955 560 APDHITFLALLYACS--HSG---LINEGKKFLEIMRCDYQLDPW-PEHYACLVDLL----GRAN-------HLEEAYQFV 622 (835)
Q Consensus 560 ~Pd~~t~~~ll~a~~--~~g---~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l----~r~g-------~~~eA~~~~ 622 (835)
+.|...|...+.+.. +.+ ...+|+.+|++.. .++|+ ...|+.+.-++ ...+ .+.+|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al---~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV---QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 444455666665543 233 3578999999887 56886 45555333322 1111 123344434
Q ss_pred HhCCCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 623 RSMQIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 623 ~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..++..| ++.+|.++.-.....|+.+.|...++++++++|. ...|++++.+|.-.|++++|.+..+....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444 6778888877777789999999999999999974 67889999999999999999998765544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00075 Score=72.66 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhc-----CCCCC---CchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 634 WCALLGACRVHSNKELGEIVAKKLLEL-----DPGNP---GNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
+++|..+|..+|+.+.|+..+++++++ .|++| ..|..|+.+|..+|++++|..+.++.
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444444444444444444322 23332 23555666666666666666655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0063 Score=48.79 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..|..+...+...|+.+.|+..++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888888899999999999999999999999999999999999999999999998776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.004 Score=51.16 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=47.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEP-TAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.+..+.+.|++++|.+.+++. ...| +.. .|..+..++...|+.+.|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455666777888888777766 3344 455 677777777788888888888888888888877665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00019 Score=75.04 Aligned_cols=416 Identities=12% Similarity=0.100 Sum_probs=235.5
Q ss_pred ChHhHHHHHHhcCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHH
Q 043955 7 SVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLK 86 (835)
Q Consensus 7 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~ 86 (835)
+++.|.+.-++...| ..|..+..+....+...+|++.|-+ .-|+..|..++.++.+.|.++.-.+.+...++
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444443333333 4677888888888888888776622 23666788888888888888888877776665
Q ss_pred hCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC-----------
Q 043955 87 CGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVG----------- 155 (835)
Q Consensus 87 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g----------- 155 (835)
.. .++.+=+.|+-+|+|.+++.+-.+++. . ||+.--..+-.-|...|.++.|.-+|..+....
T Consensus 112 ~~--ke~~IDteLi~ayAk~~rL~elEefl~---~-~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 112 KA--RESYVETELIFALAKTNRLAELEEFIN---G-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TC--CSTTTTHHHHHHHHTSCSSSTTTSTTS---C-CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred Hh--cccccHHHHHHHHHhhCcHHHHHHHHc---C-CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 53 345566788889998888765443332 2 566556666666666666666665555442211
Q ss_pred ---------CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCC---C
Q 043955 156 ---------LVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLE---N 223 (835)
Q Consensus 156 ---------~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~ 223 (835)
-.-+..||-.+-.+|...+.+..|...=-.++-..- -...|+..|-..|.+++-..+++.-. .
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 123567888888889988888877654333332211 12346677888888888888887654 2
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHh------CC--Ccc
Q 043955 224 KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQ------GF--VSD 295 (835)
Q Consensus 224 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~--~~~ 295 (835)
...-.++-|.-.|++- ++++.++.++..- +..-...+|++|.+..-|.+..-++..-.+. -+ +++
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~------sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~ 333 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 333 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSS------SSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHH------HhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChh
Confidence 4556677777777765 4555555544321 2222345778887777666665554432111 00 011
Q ss_pred ccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 043955 296 LQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGL 375 (835)
Q Consensus 296 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 375 (835)
..--..+-+...|.. |+..|-.-|.-|.+. .|. .++-+|.++...
T Consensus 334 Aw~h~~Fkdii~KVa---------------N~EiyYKAi~FYL~e------------------~P~--lL~DLL~vL~pr 378 (624)
T 3lvg_A 334 AWKEGQFKDIITKVA---------------NVELYYRAIQFYLEF------------------KPL--LLNDLLMVLSPR 378 (624)
T ss_dssp HCCGGGGTTTGGGCS---------------CSHHHHHHHHHHTTS------------------CCT--TSHHHHHHHCTT
T ss_pred hccHHHHHHHHHHcc---------------hHHHHHHHHHHHHHh------------------ChH--HHHHHHHhcccc
Confidence 111111112222222 333344344444321 111 123333333333
Q ss_pred cCchHHHHHHHHHH----------HhCCC-chhHHHHHHHHHHhcCChhhHHHHHHhcCC------------CCchhHHH
Q 043955 376 KCMSQTKEIHGYII----------RKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIES------------KDVVSWTS 432 (835)
Q Consensus 376 ~~~~~~~~i~~~~~----------~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~------------~~~~~~~~ 432 (835)
=|...+.+++...- ..... ...+-.++-+.|....+++.-+...+.-.. .+..-+.-
T Consensus 379 lDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRr 458 (624)
T 3lvg_A 379 LDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRR 458 (624)
T ss_dssp CCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHH
T ss_pred CChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHH
Confidence 23222222222110 00011 334788888889888887766554443322 23333332
Q ss_pred H-HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhC
Q 043955 433 M-ISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKG 492 (835)
Q Consensus 433 l-i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 492 (835)
+ ...|.+++++++++++.+ ...-|.-.+...+..++.+.+..++.+.+..|
T Consensus 459 IAA~LYkkn~rw~qsi~l~K---------kDklykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 459 IAAYLFKGNNRWKQSVELCK---------KDSLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp HHHHHHHTTCHHHHHSSCSS---------TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccHHHHHHHHH---------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2 234677888888886532 22334445566778888999999988888776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.017 Score=51.15 Aligned_cols=112 Identities=7% Similarity=-0.041 Sum_probs=92.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCchhHHHH
Q 043955 577 GLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRV----HSNKELGEI 652 (835)
Q Consensus 577 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~ 652 (835)
++.++|.++|+...+. + .|.. . +..+|...+.+++|.+.+++.--..++..+..|...+.. .+|.+.|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999887644 3 3333 3 888898989999999999988434667778788777776 799999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHh----cCCchHHHHHHHHHHcCCC
Q 043955 653 VAKKLLELDPGNPGNYVLISNVFAA----SRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 696 (835)
.++++.+. .++.++..|+.+|.. .+++++|.+..++.-+.|-
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987 578889999999999 8999999999888777653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0065 Score=50.20 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhh
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMR 590 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (835)
+...|..+...|...|++++|+..|++.++ ..|+. ..|..+..++...|++++|...|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666666666666666666666665 34432 345555556666666666666665544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0075 Score=64.82 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=54.5
Q ss_pred cCcHHHHHHHHHHhhhcC--CCC---CC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHH
Q 043955 576 SGLINEGKKFLEIMRCDY--QLD---PW-PEHYACLVDLLGRANHLEEAYQFVRSM---------QIEPTAE-VWCALLG 639 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~--~i~---p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~ 639 (835)
.|++++|..+++...... -+. |+ ..+|+.++.+|...|++++|+.+++++ |--|+.. .++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 455566665555433211 111 22 455666667777777777777666554 3344443 5777777
Q ss_pred HHhhcCchhHHHHHHHHHHhc-----CCCCCCc
Q 043955 640 ACRVHSNKELGEIVAKKLLEL-----DPGNPGN 667 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l-----~p~~~~~ 667 (835)
.+..+|+.+.|+..+++++++ .|++|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 777788888888877777653 5655433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.003 Score=51.93 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=39.9
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC-Chh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchh
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP-WPE-HYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKE 648 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p-~~~-~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~ 648 (835)
+...|++++|...|+...+ ..| +.. .|..++.++.+.|++++|.+.+++. ...|+. .+|. .+.++
T Consensus 10 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~~~~~ 78 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--------RKMVM 78 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH--------HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH--------HHHHH
Confidence 3444555555555554442 234 234 5555555555556666665555554 223321 1221 13445
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043955 649 LGEIVAKKLLELDPGNP 665 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~ 665 (835)
.+...++++.+.+|+++
T Consensus 79 ~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 79 DILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHhccCcccc
Confidence 55555666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.082 Score=62.44 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=67.8
Q ss_pred HHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHH
Q 043955 403 VDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGK 482 (835)
Q Consensus 403 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 482 (835)
......+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...
T Consensus 659 f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 345568899999999987763 567899999999999999999999998864 223333333455555544
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhh
Q 043955 483 ELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFN 521 (835)
Q Consensus 483 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 521 (835)
.+-......|- ++.-...|.++|++++|.+++.
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444331 2334445666677777766643
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.018 Score=61.96 Aligned_cols=72 Identities=13% Similarity=-0.048 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHh-----cCCCC
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM---------QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLE-----LDPGN 664 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~ 664 (835)
.+++.++.+|...|++++|+++++++ |.-|+.. .++.|...+..+|+.+.|+..++++++ +.|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555554443 2233332 456666666666666666666666654 35666
Q ss_pred CCchHHH
Q 043955 665 PGNYVLI 671 (835)
Q Consensus 665 ~~~~~~l 671 (835)
|.+-.++
T Consensus 410 p~~~~~~ 416 (429)
T 3qwp_A 410 SLIEDLI 416 (429)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5544433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.053 Score=64.07 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=37.1
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
+.+..+|++++|.++.+.+. +...|..+...+.+.|+.+.|.+.|.++.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 34556788888888876653 557788888888888888888888887653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.012 Score=57.97 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=52.6
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHhh-----cCchhHHHHHHHHHHhcCCCC-CCchHHHHHHHHhc-CCchHH
Q 043955 616 EEAYQFVRSM-QIEPT---AEVWCALLGACRV-----HSNKELGEIVAKKLLELDPGN-PGNYVLISNVFAAS-RKWKDV 684 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~-----~~~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~a 684 (835)
.+|...+++. .+.|+ ...|..|...+.. -|+.+.|+..++++++++|+. ..+++.++..|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444443 34444 3345555555444 477777777777777787764 77777777777774 777777
Q ss_pred HHHHHHHHcCCCccCCc
Q 043955 685 EQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 685 ~~~~~~m~~~~~~k~~g 701 (835)
.+..++......+..|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77766665544433344
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.071 Score=43.12 Aligned_cols=74 Identities=14% Similarity=0.013 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 598 WPEHYACLVDLLGRANH---LEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
+++.+..+..++..++. .++|..++++. ...|+ +..+..|.......|+.+.|...++++++.+|+ +.....+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~ 83 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTII 83 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence 57778888887765444 68888888877 56674 446666667788889999999999999999988 44444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.5 Score=40.13 Aligned_cols=140 Identities=12% Similarity=0.091 Sum_probs=89.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA 618 (835)
.-.|..++..++..+.... .+..-++-++.--..+-+-+--.+.++++-+-|.+.| +|.+...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHH
Confidence 3457777888888777653 1222333333332333334445556666655555554 3444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 619 YQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 619 ~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
...+-.+. .++....--|.....+|.-|.-+.+...++.-+|-+|...+-+++.|.+.|.-.+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44443332 122223334566677888898889998877778888999999999999999999999999999999985
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.077 Score=43.97 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-----C---C-CCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-----Q---I-EPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~---~-~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
..-+-.|+..+.+.|+++.|...++.+ + . .+.+.++..|..++...|+.+.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666667766666666554 1 1 124558888889999999999999999999999999866543
Q ss_pred HH
Q 043955 670 LI 671 (835)
Q Consensus 670 ~l 671 (835)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.083 Score=52.14 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=73.4
Q ss_pred cCChhhHHHHhhhCCCCCh--hHHHHHHHH-HHhc--C------ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcc
Q 043955 510 CGALDIANKVFNCVQTKDL--ILWTSMINA-NGLH--G------RGKVAIDLFYKMEAESFAPD---HITFLALLYACSH 575 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~~~~--~~~~~li~~-~~~~--g------~~~~Al~l~~~m~~~g~~Pd---~~t~~~ll~a~~~ 575 (835)
.|+..+-.+.+....+.|+ ..|..++.+ ++.. | ...+|..++++.++ +.|+ ...+..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444444555544443 467776653 3332 3 24677778888887 6777 3556666666766
Q ss_pred -----cCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 043955 576 -----SGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRA-NHLEEAYQFVRSM 625 (835)
Q Consensus 576 -----~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~-g~~~eA~~~~~~m 625 (835)
.|+.++|.++|++.. .+.|+ +.++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 488888888888776 56772 77788888888774 7888888877766
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.2 Score=44.27 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=55.6
Q ss_pred CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C-C-HHHHHHHHHHHhhcCchhH
Q 043955 577 GLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRAN---HLEEAYQFVRSM-QIE-P-T-AEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 577 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g---~~~eA~~~~~~m-~~~-p-~-~~~~~~ll~a~~~~~~~~~ 649 (835)
+.+..+.+.|.+.... + .++.++.-.+..+|.++. +++++..+++.. ... | + ...+-.|.-++...|+.+.
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3455566666554432 2 256677777777777777 555777777665 223 4 2 3345555566777788888
Q ss_pred HHHHHHHHHhcCCCCCCc
Q 043955 650 GEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~ 667 (835)
|.+.++++++.+|+|..+
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 888888888888865333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.68 Score=42.01 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=81.8
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKK 584 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 584 (835)
+....+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+..+ |..++--+.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455789999998887766 4677899999999999999999999888653 2333333444566655444
Q ss_pred HHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 043955 585 FLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 585 ~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 657 (835)
+-+..... .-++.-...+.-.|+++++.+++.+...-|.+.. ..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 43322211 1233344445567888888888877654343321 234577777777776644
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.14 Score=45.26 Aligned_cols=87 Identities=20% Similarity=0.091 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHH
Q 043955 543 RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG---LINEGKKFLEIMRCDYQLDP--WPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l~r~g~~~e 617 (835)
....+.+-|.+....|. |+..+-..+..++.+++ ++++|..+|+...+.. .| +.+.+-.+.-.+.|.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHH
Confidence 34567777777777664 66666666777788888 7779999999887652 36 36666678888899999999
Q ss_pred HHHHHHhC-CCCCCHH
Q 043955 618 AYQFVRSM-QIEPTAE 632 (835)
Q Consensus 618 A~~~~~~m-~~~p~~~ 632 (835)
|.+.++.. .++|+..
T Consensus 90 A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCH
Confidence 99999988 6778543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.4 Score=43.52 Aligned_cols=79 Identities=13% Similarity=0.219 Sum_probs=58.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 606 VDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
.++-...|+++.|.++.+.+ .+...|..|...+-.+||++.|+++++++ +.+..|+-+|...|+-+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~--------~D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQ--------HSFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT--------TCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHh--------CCHHHHHHHHHHhCCHHHHH
Confidence 45566788888888888776 35678999988888889999888888865 34667777888888877766
Q ss_pred HHHHHHHcCC
Q 043955 686 QVRMRMRGSG 695 (835)
Q Consensus 686 ~~~~~m~~~~ 695 (835)
++-+....+|
T Consensus 81 kla~iA~~~g 90 (177)
T 3mkq_B 81 KMQNIAQTRE 90 (177)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCc
Confidence 6655444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.72 E-value=0.31 Score=55.52 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=48.5
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
-|...|+.+.|..+|+++...-|.+-.+|..|+.+|...|+|+.|.-....+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3778899999999999999999999999999999999999999999887765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.46 E-value=0.88 Score=37.36 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=41.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCC----C-CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQ----L-DPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT 630 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----i-~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 630 (835)
-+..+...+...|+++.|...|+...+... . .+....|..++.++.+.|++++|..+++++ .+.|+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 344555666666666666666665543321 1 124567777888888888888888888776 45664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.76 E-value=3.4 Score=36.04 Aligned_cols=100 Identities=9% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHH--HHH-hcccCcHHHHHHHHHHh
Q 043955 523 VQTKDLILWTSMINANGLHGRG------KVAIDLFYKMEAESFAPDHI----TFLAL--LYA-CSHSGLINEGKKFLEIM 589 (835)
Q Consensus 523 ~~~~~~~~~~~li~~~~~~g~~------~~Al~l~~~m~~~g~~Pd~~----t~~~l--l~a-~~~~g~~~~a~~~~~~m 589 (835)
|...|..+|=..+...-..|+. ++.+++|++.... ++|+.. .|.-+ =.| +...+++++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456888999999998888998 8899999998875 777641 11111 111 12226777778887777
Q ss_pred hhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 590 RCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
... .-.- ...|-.....-.|+|+++.|.+++.+.
T Consensus 87 ~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 87 RAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 643 1111 444444444455666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.34 E-value=3.3 Score=35.12 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=27.3
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 636 ALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 636 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
.|.-++.+.|+++.|.+..+.+++.+|+|..+..+
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45557888899999999999999999987554433
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=87.16 E-value=18 Score=40.47 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=43.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--
Q 043955 433 MISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC-- 510 (835)
Q Consensus 433 li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~-- 510 (835)
....+.-.|++|.|++.+.+. ...|.+.+...|.-+.-++. +..+...-. + .| ..-+..||..|.++
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--P-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--C-cc-cccHHHHHHHHHHHhh
Confidence 445666789999999987755 35666777666665544432 222221110 1 11 22246677778754
Q ss_pred -CChhhHHHHhhhCC
Q 043955 511 -GALDIANKVFNCVQ 524 (835)
Q Consensus 511 -g~~~~A~~~f~~~~ 524 (835)
++..+|.++|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 67777777776553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.98 E-value=42 Score=37.32 Aligned_cols=275 Identities=8% Similarity=0.022 Sum_probs=145.5
Q ss_pred HHHHHHHHhC-CC-chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcC
Q 043955 383 EIHGYIIRKG-LS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVES 460 (835)
Q Consensus 383 ~i~~~~~~~~-~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p 460 (835)
++-..+.+.. .+ ...+.+.-+..+++.++.......+.. +..+...--....+....|+..+|....+++-..| +.
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence 4444454442 22 223667777888888888888886665 33344333445667778899888888888887765 33
Q ss_pred ChhhhHhHHHHhhcccchhhHH--HHHHHHHHh-----------CCCCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCCC
Q 043955 461 DSITLVSALSAASSLSILKKGK--ELNGFIIRK-----------GFNLE-GSVASSLVDMYARCGALDIANKVFNCVQTK 526 (835)
Q Consensus 461 ~~~t~~~ll~a~~~~~~~~~a~--~i~~~~~~~-----------g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~ 526 (835)
.+.....++......|.+.... +=...+... .+.++ .....+++..+.+-. .+....... .+
T Consensus 135 ~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~---~~~~~~~~~-~~ 210 (618)
T 1qsa_A 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTT-GA 210 (618)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHS-CC
T ss_pred CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChH---hHHHHHhcc-CC
Confidence 3445556666666544443221 111111111 11111 112233333332222 222222221 11
Q ss_pred ChhH---HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChh
Q 043955 527 DLIL---WTSMINANGLHGRGKVAIDLFYKMEAES-FAPDHI--TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE 600 (835)
Q Consensus 527 ~~~~---~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~ 600 (835)
+... ...-+.-+++ .+.+.|..+|......+ +.+... ....+.......+...++...+...... .++..
T Consensus 211 ~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 286 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTS 286 (618)
T ss_dssp CHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHH
T ss_pred ChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChH
Confidence 1111 1111222333 37889999999887543 322222 1223333445555455666677654422 23322
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHH-HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCA-LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
...-.+....|.|+++.|.+.|+.|+-.+ +..-|.- +..+....|+.+.|...++++.+ + ...|-.|
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 23334444457899999999999996554 2222221 22355667999999999999975 3 2456555
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.58 E-value=0.9 Score=39.60 Aligned_cols=98 Identities=8% Similarity=-0.050 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHhhcCCH------HHHHHHHHhC--CCCCCHH-HHHHHH------HHHhhcCchhHHHHHHHHHHhcCC
Q 043955 598 WPEHYACLVDLLGRANHL------EEAYQFVRSM--QIEPTAE-VWCALL------GACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~------~eA~~~~~~m--~~~p~~~-~~~~ll------~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
+.+.|-..++++.+.|+. ++-.+++++. .++|+.. .|...+ ..+..-+|++.|+.+++.++.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 355555555555555555 5555555544 2233211 222221 112233788889999998888765
Q ss_pred CCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 663 GNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 663 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
.-+..|+..+..-.++|+...|+++.......+
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 666778888888888999999988877666544
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=85.50 E-value=51 Score=36.86 Aligned_cols=239 Identities=11% Similarity=0.075 Sum_probs=113.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC-chhHHHHHHHHHHhc--
Q 043955 333 IIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKC-- 409 (835)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~li~~y~k~-- 409 (835)
....+.-.|+++.|++.+.+. ...|.+.+...|..+.-.+- ...+.. .... ...-+..||..|.+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls----~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRL----TKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccc----cCCCcccccHHHHHHHHHHHhh
Confidence 445666789999999988755 35667777777766554442 111111 1111 112455677777653
Q ss_pred -CChhhHHHHHHhcCCCCc-----hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHH
Q 043955 410 -GNIDYSRNVFESIESKDV-----VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKE 483 (835)
Q Consensus 410 -g~~~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 483 (835)
.+..+|...|--+..++. ..+..+-......+.++ .+|. .+.||......+|.-+..+=+++.-.+
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~---~LLG-----~i~~dG~r~~G~i~~~~~li~l~d~~~ 440 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFT---VLLG-----KIGRDGARIPGVIEERQPLLHVRDEKE 440 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH---HHHC-----EECTTSCEECCHHHHTCGGGTCSCHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH---HHcC-----CcCCCCCcCcchHHHhhcccccccHHH
Confidence 556666666555533330 11111111111122111 1111 122333222233333222111111111
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043955 484 LNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH 563 (835)
Q Consensus 484 i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~ 563 (835)
....+ ...........|++++|..+|+- .|+++.|+++..+.+.+
T Consensus 441 ~~~~i-----------~~~aA~~ae~~G~~~dAi~LY~L------------------a~~~d~vl~lln~~Ls~------ 485 (661)
T 2qx5_A 441 FLHTI-----------TEQAARRADEDGRIYDSILLYQL------------------AEEYDIVITLVNSLLSD------ 485 (661)
T ss_dssp HHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH------------------TTCHHHHHHHHHHHHHH------
T ss_pred HHHHH-----------HHHHHHHHHHCCCHHHHHHHHHH------------------hcCHHHHHHHHHHHHHH------
Confidence 11111 11223345577888888887654 56777777777776642
Q ss_pred HHHHHHHHHhc------------ccCcHHHHHHHHHHhhhc----CCCCC-ChhHHHHHHHH-----HhhcCCHHHHHHH
Q 043955 564 ITFLALLYACS------------HSGLINEGKKFLEIMRCD----YQLDP-WPEHYACLVDL-----LGRANHLEEAYQF 621 (835)
Q Consensus 564 ~t~~~ll~a~~------------~~g~~~~a~~~~~~m~~~----~~i~p-~~~~y~~lv~~-----l~r~g~~~eA~~~ 621 (835)
++..-. ..+.+..|.++.+..... -.+.+ +.+++..|.++ +.++|++++|++.
T Consensus 486 -----~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~ 560 (661)
T 2qx5_A 486 -----TLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQ 560 (661)
T ss_dssp -----HHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111111 123444555554443221 13333 35556655544 3689999999999
Q ss_pred HHhCCCCCC
Q 043955 622 VRSMQIEPT 630 (835)
Q Consensus 622 ~~~m~~~p~ 630 (835)
+++.++-|.
T Consensus 561 i~~L~llPl 569 (661)
T 2qx5_A 561 MELLDLLPF 569 (661)
T ss_dssp HHHTSCSCC
T ss_pred HHhCCCCCC
Confidence 999976663
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.44 E-value=5.9 Score=31.73 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 618 AYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 618 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
++.-+-.+.+-|++.+..+-|.|||.-+|+..|.+.++-+-..-.+....|-.+ ..+++-.+.+.|+.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~------------lqElkPtl~ELGI~ 99 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV------------IQELRPTLNELGIS 99 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH------------HHHHHHHHHHHTCC
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH------------HHHHhhHHHHhCCC
Confidence 333334457889999999999999999999999999998765544444445433 34666777777773
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.35 E-value=44 Score=33.66 Aligned_cols=167 Identities=13% Similarity=0.028 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHhh
Q 043955 96 VNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGL----FREMQRVGLVTNAYTFVAALQACE 171 (835)
Q Consensus 96 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 171 (835)
+.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++ ++-..+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666788899999999876432 1234556666555444 355566788888888877777766
Q ss_pred cCCChh-----HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhH
Q 043955 172 DSSFET-----LGMEIHAATVKSG--QNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCK 244 (835)
Q Consensus 172 ~~~~~~-----~a~~l~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 244 (835)
....-+ ...+...+-.+.| ..-|+.....+-..|.+.+++.+|+.-|-.-..+.+..+..|+..+.+.+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 654321 2223333344445 345778888899999999999999998853222233566555555544443322
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHH
Q 043955 245 AMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIK 289 (835)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 289 (835)
+--++ -..+ --+...+++..|..++....+
T Consensus 186 ~dlfi--------------aRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 APLYC--------------ARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHH--------------HHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH--------------HHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 21111 1112 234446777777776655543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.93 E-value=11 Score=29.93 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=46.6
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL 567 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~ 567 (835)
..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567899999999999999999999988765 46788888888777777765 55555554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.28 E-value=11 Score=30.02 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=47.7
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL 567 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~ 567 (835)
+..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344567899999999999999999999988765 47788888888887887765 55555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.77 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.75 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.7 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.27 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.2 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.12 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.89 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.75 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.69 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.36 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.31 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.24 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.03 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.03 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.71 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.91 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.02 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.75 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 85.23 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 81.13 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=5.1e-19 Score=189.17 Aligned_cols=367 Identities=11% Similarity=0.073 Sum_probs=240.6
Q ss_pred HHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCC---CCcccHHHHHHHHHhcCChHHH
Q 043955 270 ASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKA 346 (835)
Q Consensus 270 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 346 (835)
.+.+.|+++.|.+++..+++.. +.+..++..+...|.+.|++++|...|++... .+..+|..+...|.+.|++++|
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence 3444555555555555555442 12233444444444455555555555544321 1333444444445555555555
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC---
Q 043955 347 LELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE--- 423 (835)
Q Consensus 347 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 423 (835)
+..+... .+...............+...+....+........
T Consensus 87 ~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (388)
T d1w3ba_ 87 IEHYRHA-----------------------------------LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHH-----------------------------------HHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred ccccccc-----------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence 5554444 44444333333333333333333333332222221
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCC-hhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHH
Q 043955 424 SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESD-SITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASS 502 (835)
Q Consensus 424 ~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 502 (835)
......+..........+....+...+.+.... .|+ ...+..+...+...+..+.|...+..+++.. +.+...+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T d1w3ba_ 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 223333334444445555555555555555442 232 2333334444555566666666665555542 224556778
Q ss_pred HHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCc
Q 043955 503 LVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGL 578 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~ 578 (835)
+...|...|++++|...|+... ..+...|..+...|...|+.++|+..|++..+ +.|+. .++..+..++...|+
T Consensus 209 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~ 286 (388)
T d1w3ba_ 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSC
T ss_pred HhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 8889999999999999998755 35677888899999999999999999999998 56764 578888899999999
Q ss_pred HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHH
Q 043955 579 INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAK 655 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~ 655 (835)
+++|.+.|+..... .| +...+..++.++.+.|++++|++.+++. ...|+ +.+|..+..++...|+.+.|+..++
T Consensus 287 ~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 287 VAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhhcc---CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999987743 45 5788889999999999999999999986 66774 5688899999999999999999999
Q ss_pred HHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 656 KLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 656 ~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
++++++|+++.+|..|+++|.+.|+
T Consensus 364 ~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999988774
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.8e-18 Score=181.46 Aligned_cols=352 Identities=13% Similarity=0.063 Sum_probs=278.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCCh
Q 043955 334 IAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNI 412 (835)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~ 412 (835)
...+.+.|++++|++.|+++.+. .|+ ...+..+...+...|+++.|...+..+++..+.+..++..+...|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 34566778888888888888765 343 445566666777888888888888888888887777899999999999999
Q ss_pred hhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHH
Q 043955 413 DYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFII 489 (835)
Q Consensus 413 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 489 (835)
++|...|..... .+...+..........+....+............ ................+....+........
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988764 3344445555556666666666666666555432 233333344444555566666666666665
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043955 490 RKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITF 566 (835)
Q Consensus 490 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~ 566 (835)
... +.+...+..+...+...|..++|...++... ..+..+|..+...+...|++++|+..|++..... ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 543 3356777888999999999999999998654 3467789999999999999999999999998842 3345667
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhh
Q 043955 567 LALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI-EPTAEVWCALLGACRV 643 (835)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~a~~~ 643 (835)
..+..++...|++++|...|+... .+.| +...|..++.++.+.|++++|++.++.. .. +.+...|..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 778888999999999999999877 4578 4788999999999999999999999887 33 3466788889999999
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|+.+.|+..++++++++|+++..+..|+.+|...|++++|.+..++.-+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=7.4e-13 Score=137.13 Aligned_cols=223 Identities=12% Similarity=0.031 Sum_probs=157.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 043955 433 MISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGA 512 (835)
Q Consensus 433 li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~ 512 (835)
....+.+.|++++|+..|++..+. .|+. +..+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~----------------------------------~~a~~~lg~~~~~~~~ 68 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKH----------------------------------MEAWQYLGTTQAENEQ 68 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTC----------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHHHHHHHHcCC
Confidence 344566777777777777777652 3432 2234445555556666
Q ss_pred hhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHh
Q 043955 513 LDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT----------------FLALLYAC 573 (835)
Q Consensus 513 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t----------------~~~ll~a~ 573 (835)
+++|...|++.. ..+...|..+...|...|+.++|++.+++... ..|+... ....+..+
T Consensus 69 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
T d1fcha_ 69 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 146 (323)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHH
T ss_pred hHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHH
Confidence 666666665433 23455666667777777777777777777665 3333211 01112223
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHH
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGE 651 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~ 651 (835)
...+..+++...|........-.++...+..++.++.+.|++++|++.+++. ...| ++.+|..+...+...|+.+.|.
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH
Confidence 3446678888888877644333345778889999999999999999999887 4556 4668999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 652 IVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 652 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..++++++++|+++.+|..|+.+|...|++++|.+..+..-+
T Consensus 227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998766543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.2e-12 Score=133.43 Aligned_cols=238 Identities=11% Similarity=0.004 Sum_probs=152.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHH
Q 043955 395 DLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSA 471 (835)
Q Consensus 395 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a 471 (835)
+...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.+.+... ..|+..........
T Consensus 52 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~ 129 (323)
T d1fcha_ 52 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEE 129 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC----
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhh
Confidence 334566666777777777777777766542 3556777777788888888888888888766 34443222111000
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 472 ASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.... .+.......+..+...+...+|.+.|
T Consensus 130 ~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 130 GAGG--------------------------------------------------AGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp -------------------------------------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred hhhh--------------------------------------------------cccccchhhHHHHHHhhHHHHHHHHH
Confidence 0000 00000000111222334556677777
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043955 552 YKMEAES-FAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIE 628 (835)
Q Consensus 552 ~~m~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 628 (835)
.+..... -.++..++..+...+...|++++|..+|+.... ..| +...|..++.+|.+.|++++|.+.+++. .+.
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 7766521 123345666777777888888888888887663 356 4777888888899999999999888876 556
Q ss_pred C-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch-----------HHHHHHHHhcCCchHHHHH
Q 043955 629 P-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY-----------VLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 629 p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~-----------~~l~~~y~~~g~~~~a~~~ 687 (835)
| ++.+|..|..++...|+.+.|+..++++++++|++...+ ..|...+...|+++.+...
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6 456888999999999999999999999999999887754 3356677777777765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.9e-09 Score=110.05 Aligned_cols=208 Identities=11% Similarity=0.137 Sum_probs=147.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 043955 429 SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYA 508 (835)
Q Consensus 429 ~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 508 (835)
.++-+-..+.+.+.+++|++++++++. +.|+..+. |+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a----------------------------------~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTV----------------------------------WHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHH----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHH----------------------------------HHHHHHHHH
Confidence 445555667777888888888888877 45654432 444555555
Q ss_pred hcC-ChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHH
Q 043955 509 RCG-ALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 509 k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 583 (835)
+.| ++++|...|+... .++..+|+.+...+...|+.++|++.|+++++ +.|+ ...|..+...+.+.|++++|.
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHH
Confidence 555 3677777776554 35677888888888888888888888888887 5565 456777777888888888888
Q ss_pred HHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 584 KFLEIMRCDYQLDP-WPEHYACLVDLLGRANH------LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 584 ~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~------~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
..|+.+. .++| +...|..+..++.+.|. +++|++.+.++ ...| +...|..+...+.. .+.+.+...+
T Consensus 167 ~~~~~al---~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLL---KEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLL 242 (315)
T ss_dssp HHHHHHH---HHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHH
T ss_pred HHHHHHH---HHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHH
Confidence 8888776 4567 46677777777666554 67888888776 5566 57789888777654 4467888999
Q ss_pred HHHHhcCCCCCCch--HHHHHHHHhc
Q 043955 655 KKLLELDPGNPGNY--VLISNVFAAS 678 (835)
Q Consensus 655 ~~~~~l~p~~~~~~--~~l~~~y~~~ 678 (835)
+++++++|+....+ ..++.+|...
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 99999999866554 4566777543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.9e-09 Score=108.63 Aligned_cols=190 Identities=8% Similarity=0.036 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHG-RGKVAIDLFYKMEAESFAPDH-ITFLALLYA 572 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g-~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a 572 (835)
..++-+...|.+.+..++|.+.++.+. ..+..+|+.....+...| +.++|+..+++.++ +.|+. .+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHH
Confidence 345667777889999999999999876 346789999999998877 48999999999998 67765 578888889
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc---
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN--- 646 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~--- 646 (835)
+...|++++|+.+|+.+. .+.| +...|..++.++.+.|++++|++.++++ .+.| +...|+.+.......++
T Consensus 122 ~~~l~~~~eAl~~~~kal---~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADIL---NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhh---hhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 999999999999999888 5678 5889999999999999999999999988 6667 56688877665544333
Q ss_pred ---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 647 ---KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 647 ---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+.|...++++++++|+++..|.-++.++...| .+++.+..+...+
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 678999999999999999999999999987765 4666666554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=4.5e-08 Score=99.42 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=147.1
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CC-hhHHHHHHHHHHhcCChHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KD-LILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~-~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
+..+.+..+++..++...+.+..++..++..+.+.|+++.|+.+|+.+.. .+ ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34567778888887765566777888899999999999999999988653 23 347999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----
Q 043955 552 YKMEAESFAPDHITFLALLY-ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM---- 625 (835)
Q Consensus 552 ~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m---- 625 (835)
+++++.+... ...|..... -....|..+.|..+|+.+... .| ++..+...++.+.+.|++++|..++++.
T Consensus 158 ~~al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 158 KKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 9998854322 223333222 234568999999999988854 45 4778889999999999999999999886
Q ss_pred CCCCC--HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC
Q 043955 626 QIEPT--AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG 666 (835)
Q Consensus 626 ~~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 666 (835)
|..|+ ..+|...+.--..||+.+.+..+.+++.++-|++..
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 45553 458999998889999999999999999999987643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=1.4e-09 Score=112.58 Aligned_cols=225 Identities=10% Similarity=-0.101 Sum_probs=153.9
Q ss_pred CChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCC--hHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHH
Q 043955 410 GNIDYSRNVFESIES---KDVVSWTSMISSYVHNGL--ANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKEL 484 (835)
Q Consensus 410 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~--~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 484 (835)
|++++|...|+...+ ++...|..+..++...++ +++|+..+.++... .|+.
T Consensus 87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~---------------------- 142 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERN---------------------- 142 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTC----------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--Cchh----------------------
Confidence 345556666655432 344555555555555443 56666666666552 2221
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043955 485 NGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP 561 (835)
Q Consensus 485 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P 561 (835)
.......+...|...|..++|...++...+ .|..+|+.+...+...|+.++|...+++... +.|
T Consensus 143 -----------~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 209 (334)
T d1dcea1 143 -----------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLL 209 (334)
T ss_dssp -----------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHH
T ss_pred -----------hhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHH
Confidence 111122344566778889999999887774 3667899899999999988888777666555 344
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHH
Q 043955 562 DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-EVWCALL 638 (835)
Q Consensus 562 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll 638 (835)
+... +...+...+..+++...+..... ..| ....+..++..+...|+.++|.+.+.+. +..|+. .+|..+.
T Consensus 210 ~~~~---~~~~~~~l~~~~~a~~~~~~~l~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 283 (334)
T d1dcea1 210 KELE---LVQNAFFTDPNDQSAWFYHRWLL---GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 283 (334)
T ss_dssp HHHH---HHHHHHHHCSSCSHHHHHHHHHH---SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHhcchhHHHHHHHHHHH---hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 4332 22334445666777777776653 344 4556666778888889999999988876 677754 4788888
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA 677 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 677 (835)
.++...|+.+.|...++++++++|.++.+|..|+..+.-
T Consensus 284 ~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 284 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 999999999999999999999999999999888887763
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=7e-08 Score=99.71 Aligned_cols=259 Identities=13% Similarity=0.007 Sum_probs=167.5
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC--CC------chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHHHHh
Q 043955 402 IVDVYGKCGNIDYSRNVFESIES--KD------VVSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSALSAA 472 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll~a~ 472 (835)
....+...|++++|.+.|++..+ |+ ...++.+...|...|++++|+..|++....... ++....
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------- 90 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA------- 90 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH-------
Confidence 34555677777777777765422 21 234556666777778888888887776552111 111110
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC-------CC----ChhHHHHHHHHHHhc
Q 043955 473 SSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ-------TK----DLILWTSMINANGLH 541 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~----~~~~~~~li~~~~~~ 541 (835)
......+...|...|++..|...+.... .+ ....+..+...+...
T Consensus 91 ------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 146 (366)
T d1hz4a_ 91 ------------------------LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 146 (366)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh
Confidence 1122344455666677666666665432 11 113455666777888
Q ss_pred CChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC---C--ChhHHHHHHHHHhhc
Q 043955 542 GRGKVAIDLFYKMEAESFA----PDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLD---P--WPEHYACLVDLLGRA 612 (835)
Q Consensus 542 g~~~~Al~l~~~m~~~g~~----Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~---p--~~~~y~~lv~~l~r~ 612 (835)
|+.+.|...+.+....... ....++......+...|...++...+......+.-. | ....+..++.++...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 8888888888887763221 122345555566777888888888777654332211 1 134566677788899
Q ss_pred CCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHhhcCchhHHHHHHHHHHh------cCCCCCCchHHHHHHHHhcCC
Q 043955 613 NHLEEAYQFVRSM-QIEP-----TAEVWCALLGACRVHSNKELGEIVAKKLLE------LDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p-----~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~------l~p~~~~~~~~l~~~y~~~g~ 680 (835)
|++++|.+.+++. ...| ....+..+..++...|+.+.|...++++++ ..|..+..+..++.+|...|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 9999999999877 3322 133566677788889999999999998873 456667788999999999999
Q ss_pred chHHHHHHHHH
Q 043955 681 WKDVEQVRMRM 691 (835)
Q Consensus 681 ~~~a~~~~~~m 691 (835)
+++|.+..+..
T Consensus 307 ~~~A~~~l~~A 317 (366)
T d1hz4a_ 307 KSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999886654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=3e-08 Score=97.82 Aligned_cols=200 Identities=16% Similarity=-0.010 Sum_probs=132.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..|..+...|.+.|++++|+..|++.+. +.|+ ++.+++.+...|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~--l~p~----------------------------------~~~a~~~lg~~~ 81 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALA--IRPD----------------------------------MPEVFNYLGIYL 81 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCC----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhc--cCCC----------------------------------CHHHHhhhchHH
Confidence 3556667788888888899888888876 4555 344567788888
Q ss_pred HhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHH
Q 043955 508 ARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 583 (835)
.+.|++++|.+.|++.. +.+..+|..+...|...|++++|++.|++..+ ..|+ ......+..+....+..+...
T Consensus 82 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHH
Confidence 89999999999998766 34567899999999999999999999999988 4554 333333444455556555555
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 584 KFLEIMRCDYQLDPWPEHYACLVDLLGR---ANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 584 ~~~~~m~~~~~i~p~~~~y~~lv~~l~r---~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
.+....... .+....+......++. .+..+++...+... ...|+. .+|..|...+...|+.+.|...+++++
T Consensus 160 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 160 VLKQHFEKS---DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHHHHS---CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcc---chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555544422 2222223222222222 22233333332221 223433 367778888889999999999999999
Q ss_pred hcCCCCCCch
Q 043955 659 ELDPGNPGNY 668 (835)
Q Consensus 659 ~l~p~~~~~~ 668 (835)
+.+|++...|
T Consensus 237 ~~~p~~~~~~ 246 (259)
T d1xnfa_ 237 ANNVHNFVEH 246 (259)
T ss_dssp TTCCTTCHHH
T ss_pred HcCCCCHHHH
Confidence 9999875444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=9.3e-09 Score=101.65 Aligned_cols=191 Identities=12% Similarity=-0.001 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYAC 573 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~ 573 (835)
.++..+...|.+.|++++|...|++.. +.++.+|+.+..+|...|++++|++.|++.++ +.|+. .++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence 355667889999999999999999765 45788999999999999999999999999998 67764 5688888899
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH---HHHHhhcCchh
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCAL---LGACRVHSNKE 648 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~l---l~a~~~~~~~~ 648 (835)
...|+.++|...|+...+ +.| +......+.....+.+..+.+..+.... ...++...|..+ ++.....+..+
T Consensus 116 ~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999998874 456 3444444555556666655555444433 122222222221 11111223345
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+.........+.|..+..|..|+.+|...|++++|.+..++.-+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555556667777778899999999999999999999886654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=2.4e-07 Score=95.54 Aligned_cols=259 Identities=11% Similarity=-0.011 Sum_probs=149.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC-----CC----chhHHHHHHHHHhCCChHHHHHHHHHHhhcC---CcCChhhh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES-----KD----VVSWTSMISSYVHNGLANEALELFYLMNEAN---VESDSITL 465 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g---~~p~~~t~ 465 (835)
+++.+...|...|++++|...|++..+ ++ ..++..+...+...|++.+|...+.+..... ..+....
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~- 131 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM- 131 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhH-
Confidence 455667778888888888888876542 11 2345556677888899999988888765421 0011000
Q ss_pred HhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--------CChhHHHHHHHH
Q 043955 466 VSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--------KDLILWTSMINA 537 (835)
Q Consensus 466 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~ 537 (835)
....+..+...|...|+++.|...+..... ....++..+...
T Consensus 132 ------------------------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 132 ------------------------------HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 011233445556666666666666654321 122345555566
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHH
Q 043955 538 NGLHGRGKVAIDLFYKMEAE----SFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP--WPEHYACLVDLL 609 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~----g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l 609 (835)
+...|...++...+.+.... +..|.. ..+......+...|..++|..+++.......-.+ ....+..+..++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 66677777777766665431 111111 2234445556677788888877776543221111 134455567777
Q ss_pred hhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC---------chHHHH
Q 043955 610 GRANHLEEAYQFVRSM-------QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPG---------NYVLIS 672 (835)
Q Consensus 610 ~r~g~~~eA~~~~~~m-------~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~---------~~~~l~ 672 (835)
...|++++|.+.++++ +..|+.. +|..+..++...|+.+.|...+++++++.+.... .+..+.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 341 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH
Confidence 7788888887777654 3344333 5666667777788888888888888777553211 122233
Q ss_pred HHHHhcCCchHHHHH
Q 043955 673 NVFAASRKWKDVEQV 687 (835)
Q Consensus 673 ~~y~~~g~~~~a~~~ 687 (835)
..+...++.+++.+-
T Consensus 342 ~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 342 RQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHTTCSCHHHHH
T ss_pred HHHHhcCCChHHHHH
Confidence 345556777776553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=6.3e-08 Score=99.64 Aligned_cols=269 Identities=8% Similarity=-0.039 Sum_probs=188.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH----HHHHHhc-------cccCchHHHHHHHHHHHhCCCchhHHH
Q 043955 332 TIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIG----SVLMACS-------GLKCMSQTKEIHGYIIRKGLSDLVILN 400 (835)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~ 400 (835)
.++......+..++|++++.+... ..|+..+.- .++.... ..+.++.+...+..+++..+.+..++.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~ 111 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 111 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 333333344445889999988876 457766532 2223222 334577888889999999888888888
Q ss_pred HHHHHHHhcCC--hhhHHHHHHhcCC---CCchhHHHHH-HHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 401 AIVDVYGKCGN--IDYSRNVFESIES---KDVVSWTSMI-SSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 401 ~li~~y~k~g~--~~~A~~~f~~~~~---~~~~~~~~li-~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
.+...+...+. .++|...++...+ ++...|...+ ..+...+.+++|+..+++.... .|+
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~------------- 176 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFS------------- 176 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCC-------------
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCC-------------
Confidence 88888777765 7889988888743 4566665544 5677789999999999988773 343
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
+...++.+...|.+.|++++|...+....+-+.... .....+...+..+++...+.+.
T Consensus 177 ---------------------~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 177 ---------------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp ---------------------CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHH
Confidence 334466777778888888888777765543222222 2233455667778888888888
Q ss_pred HHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 043955 555 EAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT- 630 (835)
Q Consensus 555 ~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~- 630 (835)
... .|+ ..++..+...+...|..++|...|.... ...| +...|..++.++.+.|++++|.+.+++. .+.|+
T Consensus 235 l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 235 LLG--RAEPLFRCELSVEKSTVLQSELESCKELQELE---PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp HHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred HHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH---hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 874 443 3445555666677788899998888665 5667 4788889999999999999999999888 66774
Q ss_pred HHHHHHHHHHHhhc
Q 043955 631 AEVWCALLGACRVH 644 (835)
Q Consensus 631 ~~~~~~ll~a~~~~ 644 (835)
...|+.|.+.....
T Consensus 310 ~~y~~~L~~~~~~e 323 (334)
T d1dcea1 310 AAYLDDLRSKFLLE 323 (334)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHh
Confidence 55788776665543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=1.3e-06 Score=88.15 Aligned_cols=26 Identities=0% Similarity=-0.115 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHh
Q 043955 429 SWTSMISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 429 ~~~~li~~~~~~g~~~~Al~lf~~m~ 454 (835)
.|...+..+.+.|+.++|..+|+++.
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l 126 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444444444444444444444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=9.7e-07 Score=82.01 Aligned_cols=86 Identities=10% Similarity=-0.087 Sum_probs=73.8
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEG 582 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a 582 (835)
...+...|+++.|.+.|+++.+++...|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+.|+.++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 44567889999999999999888989999999999999999999999999988 56765 5678888888999999999
Q ss_pred HHHHHHhhh
Q 043955 583 KKFLEIMRC 591 (835)
Q Consensus 583 ~~~~~~m~~ 591 (835)
...|+....
T Consensus 90 ~~~~~kAl~ 98 (192)
T d1hh8a_ 90 IKDLKEALI 98 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2e-07 Score=78.91 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=79.5
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS 645 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~ 645 (835)
-...+...|++++|..+|+... .+.| +...|..++.++...|++++|++.++++ .+.| ++..|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAI---KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---hcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 3455667778888888887766 3467 4777888888888888888888887776 4445 5567877878888888
Q ss_pred chhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 646 NKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
+.+.|+..++++++++|+++..+..++++.+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 8888888888888888888888777777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.5e-07 Score=77.30 Aligned_cols=89 Identities=9% Similarity=0.087 Sum_probs=81.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
-++.+.+.|++++|+.++++. ...| ++..|..+..++...|+.+.|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 467788999999999999988 5566 56689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 043955 683 DVEQVRMRMRG 693 (835)
Q Consensus 683 ~a~~~~~~m~~ 693 (835)
+|.+..+...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999876664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=2.8e-07 Score=86.69 Aligned_cols=116 Identities=9% Similarity=-0.105 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 043955 561 PDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCAL 637 (835)
Q Consensus 561 Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~l 637 (835)
|+...+......+...|++++|+.+|+... .+.| ++..|..++.+|.+.|++++|++.++++ .+.|+ +..|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal---~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAI---TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 666777777788888888888888887766 3467 4777888888888888888888888777 66774 4578788
Q ss_pred HHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 638 LGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 638 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
..++...|+.+.|...++++++++|++...+..+.+.+...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877766655555444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=6.9e-07 Score=83.85 Aligned_cols=95 Identities=8% Similarity=-0.132 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHH
Q 043955 526 KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYA 603 (835)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~ 603 (835)
|+..........|.+.|++++|+..|++.++ +.|+. ..|..+..++...|++++|...|+... .+.|+ ...|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHH
Confidence 3444455566667777777777777777766 34543 446666666777777777777777665 56673 66677
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 043955 604 CLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 604 ~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.++.+|.+.|++++|+..++++
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777777777777777654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=7.4e-07 Score=75.49 Aligned_cols=106 Identities=11% Similarity=-0.055 Sum_probs=84.1
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHL---EEAYQFVRSM-QIEPTA---EVWCALLG 639 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~---~eA~~~~~~m-~~~p~~---~~~~~ll~ 639 (835)
.+++.+...+++++|.+.|+... .+.| +++++..++.+|.++++. ++|+++++++ ...|++ .+|..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL---~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEK---AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 46677777888899999888776 4567 578888888888876655 4688888886 555544 26788888
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
+|...|+.+.|+..++++++++|++..+..+++.|..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999887777766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=4.9e-07 Score=75.67 Aligned_cols=88 Identities=16% Similarity=0.058 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
-.++..+.+.|++++|+..+++. ...| ++.+|..|..++...|+.+.|+..++++++++|+++.++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677888999999999999987 5667 466899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHH
Q 043955 681 WKDVEQVRMR 690 (835)
Q Consensus 681 ~~~a~~~~~~ 690 (835)
+++|.+..++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.4e-06 Score=76.59 Aligned_cols=90 Identities=16% Similarity=0.033 Sum_probs=67.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCc
Q 043955 604 CLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKW 681 (835)
Q Consensus 604 ~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 681 (835)
..+..+.+.|++++|++.+++. .+.| ++..|..+...+...|+.+.|...++++++++|+++.+|..++.+|...|+|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456667788888888777776 4455 4557777777777888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHc
Q 043955 682 KDVEQVRMRMRG 693 (835)
Q Consensus 682 ~~a~~~~~~m~~ 693 (835)
++|.+..+....
T Consensus 95 ~eA~~~~~~a~~ 106 (159)
T d1a17a_ 95 RAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777665543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.2e-06 Score=78.68 Aligned_cols=115 Identities=7% Similarity=-0.022 Sum_probs=88.7
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCc
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSN 646 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~ 646 (835)
...+...|++++|...|+... .+.| +...|..++.+|...|++++|.+.++++ .+.|+ ..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAI---ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcc---ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345667788888888887766 3467 4778888888888888888888888877 55664 4588888889999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHH--hcCCchHHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFA--ASRKWKDVEQV 687 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~--~~g~~~~a~~~ 687 (835)
.+.|...++++++++|+++..+..+..+.. ..+.|+++...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888877776643 34456666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=1.4e-05 Score=79.68 Aligned_cols=163 Identities=9% Similarity=-0.069 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHH-hcCChHHHHHHHHHHHH----CCCCCC-HH
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANG-LHGRGKVAIDLFYKMEA----ESFAPD-HI 564 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~-~~g~~~~Al~l~~~m~~----~g~~Pd-~~ 564 (835)
++.+..+|.+.|++++|.+.|+...+ .+ ..++..+...|- ..|++++|++.|++..+ .+-.|. ..
T Consensus 80 ~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~ 159 (290)
T d1qqea_ 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Confidence 33444555555555555555543221 01 233445555553 35777777777776643 111121 13
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H---H
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-----PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT---A---E 632 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~---~ 632 (835)
++..+...+...|++++|..+|+.......-.|. ...|..++.++...|+++.|.+.+++. .+.|. + .
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~ 239 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH
Confidence 4555666677777777777777766543222221 123445555556677777777777776 33332 1 2
Q ss_pred HHHHHHHHHhhc--CchhHHHHHHHHHHhcCC
Q 043955 633 VWCALLGACRVH--SNKELGEIVAKKLLELDP 662 (835)
Q Consensus 633 ~~~~ll~a~~~~--~~~~~a~~~~~~~~~l~p 662 (835)
....|+.++..+ ..++.|...++++.+++|
T Consensus 240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 334455554432 234555555555555554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.9e-05 Score=72.99 Aligned_cols=127 Identities=13% Similarity=0.005 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDL 608 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 608 (835)
.|+- ...+...|++++|++.|+++ ..|+..++..+..++...|++++|.+.|+... .++|+ +..|..++.+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl---~ldp~~~~a~~~~g~~ 79 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI---NRDKHLAVAYFQRGML 79 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHH---HHhhhhhhhHHHHHHH
Confidence 3553 56678899999999999874 46777888899999999999999999999887 56784 8899999999
Q ss_pred HhhcCCHHHHHHHHHhC----CC-------------CCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 609 LGRANHLEEAYQFVRSM----QI-------------EPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m----~~-------------~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
+.+.|++++|.+.+++. +- +++ ..+|..+..++...|+.+.|...+++++++.|+.
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999888764 11 111 2356677778889999999999999999999974
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=5.3e-06 Score=75.12 Aligned_cols=135 Identities=13% Similarity=0.012 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDL 608 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 608 (835)
..+......+.+.|++++|+..|++.+.. -|... +..+.-......+ ....|..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchh--------HHHHHHHHHHH
Confidence 34556666777788888888888877652 22110 0000000111111 12356778889
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 609 LGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
|.+.|++++|++.+++. .+.| ++.+|..+..++...|+.+.|...++++++++|+|+.....++.++...+...+..
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5667 56689889999999999999999999999999999999999999988776666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=1.4e-05 Score=79.55 Aligned_cols=189 Identities=10% Similarity=-0.051 Sum_probs=128.2
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHH
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHGRGKVAIDLFYKMEAESF---APD--HIT 565 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~---~Pd--~~t 565 (835)
|.-..++|..+|++++|.+.|.+..+ .| ..+|+.+...|.+.|++++|++.+++..+.-. .|. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 34456789999999999999986642 22 35799999999999999999999998765211 111 234
Q ss_pred HHHHHHHhc-ccCcHHHHHHHHHHhhhcC---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----H-
Q 043955 566 FLALLYACS-HSGLINEGKKFLEIMRCDY---QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----A- 631 (835)
Q Consensus 566 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~---~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~- 631 (835)
+..+...|. ..|++++|.++|+....-+ +-.+ ....|..+++++...|++++|.+.+++. +-.|. .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 566666664 4699999999998765432 2222 1456888999999999999999999886 21121 1
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc--hHHHHH---HHHh--cCCchHHHHHH
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN--YVLISN---VFAA--SRKWKDVEQVR 688 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~--~~~l~~---~y~~--~g~~~~a~~~~ 688 (835)
..+...+-.+...++.+.|...++++.+++|..+.+ +.++.+ .|.. .+++++|.+..
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 123344445667799999999999999999965443 334444 3433 35577776655
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.6e-05 Score=70.34 Aligned_cols=61 Identities=13% Similarity=-0.032 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+|..+..++...|+.+.|+..++++++++|+++.+|..++.+|...|+|++|....+...+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5666777788999999999999999999999999999999999999999999999887665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=1.9e-05 Score=71.34 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHh
Q 043955 532 TSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLG 610 (835)
Q Consensus 532 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~ 610 (835)
......+...|++++|++.|+++++. .|.. ....... ....+.| ....|..+..++.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~----------~~~~~~~----------~~~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDA----------DGAKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHH----------HHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh----------hhhhhhH----------HHHHhChhhHHHHHHHHHHHH
Confidence 34455667788888888888877641 1100 0000000 0112345 4667888999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 611 RANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
+.|++++|+..++++ .+.| ++.+|..+..++...|+.+.|+..++++++++|+|+.++..|..++.......+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 7777 456899999999999999999999999999999999999888888765444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.89 E-value=6.3e-05 Score=66.35 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEE
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIH 712 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~ 712 (835)
++..+..++...|+.+.|...++++++++|.++.+|..++.+|...|+|++|....+...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------- 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------- 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 5666777778889999999999999999999999999999999999999999888765554
Q ss_pred EEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 713 SFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 713 ~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
..|...++...+..+..++
T Consensus 130 -------l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 130 -------LNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp -------HSTTCHHHHHHHHHHHHHH
T ss_pred -------hCCCCHHHHHHHHHHHHHH
Confidence 2355566667777666666
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=1.6e-05 Score=67.93 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH-------HHH
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV-------LIS 672 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~-------~l~ 672 (835)
+--+++.+.+.|++++|++.+++. .+.| ++.+|..+..++...|+++.|...++++++++|+++..|. .++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345778888999999999998877 4555 5678888999999999999999999999999999887654 566
Q ss_pred HHHHhcCCchHHHHHHHHH
Q 043955 673 NVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 673 ~~y~~~g~~~~a~~~~~~m 691 (835)
+++...+++++|.+..+.-
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 7788889999999987543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=1.5e-05 Score=67.21 Aligned_cols=92 Identities=7% Similarity=-0.019 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh---cCchhHHHHHHHHHHhcCCCC--CCchHHHHHH
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRV---HSNKELGEIVAKKLLELDPGN--PGNYVLISNV 674 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~---~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~ 674 (835)
...+++.+...+++++|++.+++. ...| ++.++..+..+... .++.+.|+..++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345778888999999999999988 5556 55677777777654 456678999999999999865 3478999999
Q ss_pred HHhcCCchHHHHHHHHHHc
Q 043955 675 FAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 675 y~~~g~~~~a~~~~~~m~~ 693 (835)
|...|++++|.+..+..-+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999999887765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.81 E-value=6.5e-05 Score=67.52 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA 677 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 677 (835)
..|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|+.+.|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34667888899999999999999887 5556 556888888999999999999999999999999999999999999887
Q ss_pred cCCchH-HHHHHHHH
Q 043955 678 SRKWKD-VEQVRMRM 691 (835)
Q Consensus 678 ~g~~~~-a~~~~~~m 691 (835)
.+...+ ..++.+.|
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 776654 33444444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.80 E-value=0.00013 Score=65.39 Aligned_cols=80 Identities=9% Similarity=-0.011 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEE
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIH 712 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~ 712 (835)
++..+..++...|+.+.|...++++++++|+++.+|..++.+|...|+|++|.+..+...+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~------------------- 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE------------------- 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 4556667778899999999999999999999999999999999999999999999887664
Q ss_pred EEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 713 SFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 713 ~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
.+|...++...|..+..++
T Consensus 127 -------l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 127 -------VNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp -------SCTTCHHHHHHHHHHHHHH
T ss_pred -------hCCCCHHHHHHHHHHHHHH
Confidence 2455667777777776555
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.75 E-value=6.5e-06 Score=72.15 Aligned_cols=120 Identities=13% Similarity=-0.003 Sum_probs=68.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccc----------CcHHHHHHHHHHhhhcCCCCC-ChhHHHHH
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHS----------GLINEGKKFLEIMRCDYQLDP-WPEHYACL 605 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~i~p-~~~~y~~l 605 (835)
|-+.+.+++|++.|++..+ +.|+.. .+..+..++... +.+++|...|+... .++| +.+.|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl---~l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---HhcchhhHHHhhH
Confidence 3445566777777777766 456543 344444444422 33445555555444 3455 24555555
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 606 VDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
+.+|...|++. ++... ..++++.|...++++++++|+++.++..|+......+.+.+
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55554443221 11111 11246889999999999999998888888777654444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.0036 Score=61.97 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=25.8
Q ss_pred CCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 043955 57 DAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYS 136 (835)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~ 136 (835)
+..-...+...|.+.|.++.|..++..+ .-+..++..|.+.++++.|.+++.+.. +..+|..+...+.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACV 80 (336)
T ss_dssp ----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 3333344444455555555555555422 123444555555555555555554432 2334555555554
Q ss_pred hCC
Q 043955 137 ASG 139 (835)
Q Consensus 137 ~~g 139 (835)
+..
T Consensus 81 ~~~ 83 (336)
T d1b89a_ 81 DGK 83 (336)
T ss_dssp HTT
T ss_pred hCc
Confidence 443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=6.9e-05 Score=67.44 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...|..+..++...|+.+.|+..++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 446788888888999999999999999999999999999999999999999999998876665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.69 E-value=0.00013 Score=64.17 Aligned_cols=127 Identities=10% Similarity=-0.159 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
...|......+.+.|++++|+..|++.+.. -|... ...-.........+ ....|..++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~~--------~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKNI--------EISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhhH--------HHHHHhhHHH
Confidence 356777888888999999999999988762 22110 00000000000111 2346777889
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 608 LLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
+|.+.|++++|++.+++. .+.| +..+|..+..++...|+.+.|...++++++++|+|+.....+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999887 6667 5568999999999999999999999999999999988877776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.67 E-value=4.5e-05 Score=63.19 Aligned_cols=88 Identities=15% Similarity=-0.055 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 043955 532 TSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLL 609 (835)
Q Consensus 532 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l 609 (835)
-.+...+.+.|++++|+..|++.+. ..|+ ..+|..+..++.+.|++++|...|+... .+.| +...+..++.+|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR---MLDPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccc---ccccccccchHHHHHHH
Confidence 3445556667777777777777776 4564 3456666666777777777777777655 4456 366666677777
Q ss_pred hhcCCHHHHHHHHHh
Q 043955 610 GRANHLEEAYQFVRS 624 (835)
Q Consensus 610 ~r~g~~~eA~~~~~~ 624 (835)
...|++++|++.+++
T Consensus 95 ~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 95 TNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 777777777766654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.60 E-value=0.003 Score=60.93 Aligned_cols=225 Identities=12% Similarity=-0.039 Sum_probs=130.3
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
|+..|..+...+.+.+++++|++.|++..+.|- ...+ ..|..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~---~~A~-----------------------------------~~Lg~ 42 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---NSGC-----------------------------------FNLGV 42 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHH-----------------------------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---HHHH-----------------------------------HHHHH
Confidence 345566666677778888888888888876551 1111 11222
Q ss_pred HHHh----cCChhhHHHHhhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hc
Q 043955 506 MYAR----CGALDIANKVFNCVQT-KDLILWTSMINANGL----HGRGKVAIDLFYKMEAESFAPDHITFLALLYA--CS 574 (835)
Q Consensus 506 ~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a--~~ 574 (835)
+|.. ..+...|...+..... .+...+..+...+.. .++.+.|+..+++....|..+.... ...... ..
T Consensus 43 ~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~-l~~~~~~~~~ 121 (265)
T d1ouva_ 43 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCAS-LGGIYHDGKV 121 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHCSS
T ss_pred HHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHh-hcccccCCCc
Confidence 2222 2244444444444332 234444444444432 3466777888887777553222222 122222 22
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCc
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSMQIEPTAEVWCALLGACRV----HSN 646 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~ 646 (835)
.......+...+..... ..+...+..+...+.. ......+...++...-..++..+..|...+.. .+|
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 34456666666665432 1245556666666654 45666777777665323355555455444433 468
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHh----cCCchHHHHHHHHHHcCC
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAA----SRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 695 (835)
.+.|+..++++.+.+ ++.++..|+.+|.. ..+.++|.+..++.-+.|
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 899999999998875 57788889999986 447888888887776655
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=7.3e-06 Score=88.55 Aligned_cols=131 Identities=9% Similarity=-0.020 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 043955 542 GRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 542 g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
|.++.|+..+.+..+ +.|+. ..+..+...+...|..++|...+..... +.| ...+.++++++...|++++|..
T Consensus 100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~~-~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---YIC-QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHTC---------------------------------CCHHHH---HHH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC---CCH-HHHHHHHHHHHHHcccHHHHHH
Confidence 444555544444333 34443 3455555566666777776666554331 111 2456667777777777777777
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 621 FVRSM-QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 621 ~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
.+++. .+.|+. ..|+.|...+...|+...|...+.+++.++|..+.++..|..+|...
T Consensus 174 ~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 77766 555643 36777777777777777777777777777777777777776666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=1.9e-05 Score=85.17 Aligned_cols=168 Identities=8% Similarity=-0.014 Sum_probs=96.0
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHH
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLE 587 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (835)
|.++.|...|.... .++...|+.+...+...|+.++|+..+++... ..| ..++..+...+...|++++|..+|+
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 34445555554432 34566788888899999999999999888765 222 3567788899999999999999999
Q ss_pred HhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC--
Q 043955 588 IMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QI-EPTAEVWCALLGACRVHSNKELGEIVAKKLLELDP-- 662 (835)
Q Consensus 588 ~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p-- 662 (835)
... .+.|+ ...|+.++.++...|+..+|...+.+. .. .|-+.++.+|...+....+...+ .+..+
T Consensus 177 ~A~---~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~-------~~~~~~~ 246 (497)
T d1ya0a1 177 HAA---QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE-------VKTKWGV 246 (497)
T ss_dssp HHH---HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCC-------CCSSCCH
T ss_pred HHH---HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhh-------hcccccc
Confidence 887 66885 789999999999999999999999887 33 45677888888776543322110 00001
Q ss_pred -CCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 663 -GNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 663 -~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
.....++.+..++.....+++..++.+.+
T Consensus 247 ~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 247 SDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 11123566666777777888777665443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.36 E-value=0.00034 Score=63.10 Aligned_cols=114 Identities=9% Similarity=-0.040 Sum_probs=80.7
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 043955 567 LALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSN 646 (835)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~ 646 (835)
..........|++++|.+.|.....-+.-.+-... ...........-++.. ....|..+..++...|+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 33445678889999999999887744322221110 0011111111111110 13468888899999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.+.|...++++++++|.+...|..|..+|...|++++|.+..+.++
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.0014 Score=58.91 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhh----hcCCCCCChhH
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMR----CDYQLDPWPEH 601 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~i~p~~~~ 601 (835)
+..|..++..+...|++++|+..+++++. +.|. ...|..++.++...|+.++|++.|+.+. ++.|++|..++
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34566777777788888888888888877 4554 4567777888888888888888777664 34688887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00053 Score=57.95 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--------hh
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--------PE 600 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--------~~ 600 (835)
.+..+...|.+.|++++|+..|++.++ +.|+ ...+..+..++.+.|++++|...++.+.. +.|+ ..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~~~~~~~~~~~a~ 80 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE---VGRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH---hCcccHHHHHHHHH
Confidence 344556666777777777777777776 3444 34555666666777777777777766552 2221 12
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
.|..+++.+...|++++|.+.+++
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344455555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.24 E-value=6.7e-05 Score=65.39 Aligned_cols=48 Identities=13% Similarity=0.031 Sum_probs=39.5
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC-----------chHHHHHHHHHH
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK-----------WKDVEQVRMRMR 692 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~-----------~~~a~~~~~~m~ 692 (835)
+.++.|+..++++++++|+++.+|..++++|...|+ |++|.+..++.-
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal 113 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 113 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc
Confidence 446789999999999999999999999999998775 466666655444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.22 E-value=0.00022 Score=68.92 Aligned_cols=124 Identities=15% Similarity=-0.011 Sum_probs=75.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHH
Q 043955 540 LHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~e 617 (835)
+.|+.++|+..|++.++ ..|+. ..+..+...+...|++++|...|+... .+.|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~---~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHhccccHH
Confidence 45777777777777777 45554 456666667777777777777777666 34564 4445555555555555555
Q ss_pred HHHHHHhC--CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 618 AYQFVRSM--QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 618 A~~~~~~m--~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
+..-.... ..+|+.. .+......+...|+.+.|+..++++.++.|..++.+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 44332222 2233222 233334556677888888888888888888766553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00055 Score=54.29 Aligned_cols=74 Identities=18% Similarity=0.078 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM----Q----IEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m----~----~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
+.+--++..+.+.|++++|.+.+++. | ..++ ..++..|..++...|+.+.|...++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 33445667777777777777666554 1 1233 4478889999999999999999999999999999877666
Q ss_pred HHH
Q 043955 671 ISN 673 (835)
Q Consensus 671 l~~ 673 (835)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.07 E-value=0.037 Score=54.45 Aligned_cols=178 Identities=7% Similarity=0.001 Sum_probs=97.1
Q ss_pred chhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCch
Q 043955 300 NTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMS 379 (835)
Q Consensus 300 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 379 (835)
..++..|.+.++...|..++.+.. +..+|..+...+.+.....-| .+.......+......++..+...|..+
T Consensus 44 ~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e 116 (336)
T d1b89a_ 44 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFE 116 (336)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChH
Confidence 344555555666666666555432 455777777777766554432 2222334445555667777777778877
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCC-----------CchhHHHHHHHHHhCCChHHHHH
Q 043955 380 QTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESK-----------DVVSWTSMISSYVHNGLANEALE 448 (835)
Q Consensus 380 ~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~Al~ 448 (835)
....+++..+.....+..+++-|+..|++.+. ++-.+.+.....+ ....|..++-.|.+.|++++|+.
T Consensus 117 ~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~ 195 (336)
T d1b89a_ 117 ELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 195 (336)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Confidence 77777777664444455578888888888643 2222222222111 11224444555555555555544
Q ss_pred HHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH
Q 043955 449 LFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR 490 (835)
Q Consensus 449 lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 490 (835)
+.-+ -.|+.......+..+.+.++.+..-++....++
T Consensus 196 ~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 196 TMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp HHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 3221 123444444555666666666666665555444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.03 E-value=0.0001 Score=71.29 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=87.5
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchhHH
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKELG 650 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a 650 (835)
...|++++|+..++... ..+| +...+..++.+|.+.|++++|.+.++.. ...|+. ..+..+..+.+..+..+.+
T Consensus 7 L~~G~l~eAl~~l~~al---~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAI---KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHH---HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 46799999999999887 5578 6899999999999999999999999988 667754 4666665555544443333
Q ss_pred HHHHHH-HHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 651 EIVAKK-LLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 651 ~~~~~~-~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.....+ .+..+|++...+...++++...|++++|.+.++...+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 222222 2223455556677889999999999999999888766
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.03 E-value=0.00086 Score=58.93 Aligned_cols=88 Identities=13% Similarity=-0.069 Sum_probs=58.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC------
Q 043955 606 VDLLGRANHLEEAYQFVRSM----QIEPT----------AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP------ 665 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m----~~~p~----------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~------ 665 (835)
+..+.+.|++++|++.+++. |--|+ +..|+.+..++...|+.+.|...+++++++.|...
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33444556666666555554 22222 34567777777777888888888887777654321
Q ss_pred -----CchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 666 -----GNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 666 -----~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..|..++.+|...|++++|.+..+...+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467889999999999999998776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.81 E-value=0.035 Score=52.87 Aligned_cols=30 Identities=10% Similarity=-0.100 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043955 328 ISWTTIIAGYAQNNCHLKALELFRTVQLEG 357 (835)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (835)
..|..+...+.+.+++++|++.|++..+.|
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g 32 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK 32 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345555566667777777777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.79 E-value=0.0036 Score=54.68 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM--------QIEPT-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
|..+..+|...|++++|.+.+++. ...|+ ..++..+..++...|+.+.|...+++++++.|+..+..
T Consensus 58 ~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 58 HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 137 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence 444555555555555555444433 12222 12456677888899999999999999999988766554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.025 Score=44.10 Aligned_cols=61 Identities=7% Similarity=-0.116 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC-------chHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPG-------NYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-------~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+-.+...+...|+.+.|+..+++++++.|.++. +|..|+++|...|++++|.+..++.-+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3446777889999999999999999999876543 477899999999999999999877654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=3.8 Score=41.42 Aligned_cols=346 Identities=10% Similarity=-0.028 Sum_probs=166.6
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhccccCchHHH
Q 043955 304 DMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSVLMACSGLKCMSQTK 382 (835)
Q Consensus 304 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~ 382 (835)
..+.+.++.......+...+ .+...-.....+..+.|+..+|...++..-..| ..|+. ..
T Consensus 80 ~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~------------------c~ 140 (450)
T d1qsaa1 80 NELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA------------------CD 140 (450)
T ss_dssp HHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH------------------HH
T ss_pred HHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH------------------HH
Confidence 33445555555444332211 133333455667778888888888887776654 23322 33
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh
Q 043955 383 EIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS 462 (835)
Q Consensus 383 ~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~ 462 (835)
.++....+.|..+....-.-+......|+...|..+...++..........+....+. ..+...... ..++.
T Consensus 141 ~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~~-----~~~~~ 212 (450)
T d1qsaa1 141 KLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFART-----TGATD 212 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHH-----SCCCH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHhc-----CCCCh
Confidence 4455555555554444444555566668888888888777654444444444443322 222221111 11222
Q ss_pred hhhHhHHHHhhcc--cchhhHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCChhhHHHHhhhCCC--CChhHHHHHH
Q 043955 463 ITLVSALSAASSL--SILKKGKELNGFIIRKGFNLEGSVA---SSLVDMYARCGALDIANKVFNCVQT--KDLILWTSMI 535 (835)
Q Consensus 463 ~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~~~---~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li 535 (835)
.....+..+..+. .+.+.+..++............... ..+...+...+..+.|...++.... .+.....-.+
T Consensus 213 ~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~ 292 (450)
T d1qsaa1 213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred hhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHH
Confidence 2222233333332 3445555555554443222221111 1122222334555556555543331 2222222233
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH-HHhhcCC
Q 043955 536 NANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD-LLGRANH 614 (835)
Q Consensus 536 ~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~-~l~r~g~ 614 (835)
......+++..+...|+.|... ..-...-..-+..+....|+.++|..+|...... ++ -|+.|.. .+++.-.
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~----~~--fYG~LAa~~Lg~~~~ 365 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----RG--FYPMVAAQRIGEEYE 365 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CS--HHHHHHHHHTTCCCC
T ss_pred HHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC----CC--hHHHHHHHHcCCCCC
Confidence 3344567777777777776432 1111222334556777788888888888776521 22 4544431 2222111
Q ss_pred HHHHHHHHHhCCCCCCHH-HHH---HHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 615 LEEAYQFVRSMQIEPTAE-VWC---ALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 615 ~~eA~~~~~~m~~~p~~~-~~~---~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
+. ....+..++.. .-+ .-.......|....|++-...+++-- ++.-...++.+..+.|.++.|...-..
T Consensus 366 ~~-----~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 366 LK-----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp CC-----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC-----cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 00 00001111111 000 11233445677777777777666432 344566777777777777777655443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.17 E-value=2.2 Score=33.79 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=90.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHH
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~e 617 (835)
+.-.|..++..++..+.... .+..-++-++.-....-+-+--.+.++++-+-|.+.|-.. .-.+|..+.+.+...|
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~~se 87 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNTLNE 87 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTCCCH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcchHH
Confidence 34567788888888887653 2222333333333333444555666666666666666321 1223444444443222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 618 AYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 618 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
...--|....++|.-|.-+..++.+++-+.-+|...+-+++.|-+.|.-.++.++.++.-++|++
T Consensus 88 ---------------~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 ---------------HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ---------------HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 22334556667888888889999999988788889999999999999999999999888888875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.31 E-value=1.2 Score=35.71 Aligned_cols=70 Identities=10% Similarity=-0.005 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 599 PEHYACLVDLLGRAN---HLEEAYQFVRSM-QIEP-TA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g---~~~eA~~~~~~m-~~~p-~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
+.+--....+|.++. ++++|+.++++. ...| +. ..|-.|.-+|...|+.+.|...++++++++|+|..+.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 333333444444433 334455555444 1223 32 3556677778888999999999999999999875443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.02 E-value=16 Score=36.37 Aligned_cols=248 Identities=7% Similarity=0.012 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCC-cCChhhhHhHHHHhhccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANV-ESDSITLVSALSAASSLS 476 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~-~p~~~t~~~ll~a~~~~~ 476 (835)
+....+..+++.++.+.....|..-+ .+...-.....+..+.|+.++|...+...-..|. .|+. ...++......|
T Consensus 74 lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~~~~ 150 (450)
T d1qsaa1 74 LQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWRASG 150 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcC
Confidence 44555667778888877665553322 2333334566777889999999998888876653 2322 222222222222
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---------------------------CChh
Q 043955 477 ILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---------------------------KDLI 529 (835)
Q Consensus 477 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---------------------------~~~~ 529 (835)
.+. ....-.-++.....|+...|..+...+.. .+..
T Consensus 151 ~lt-----------------~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~ 213 (450)
T d1qsaa1 151 KQD-----------------PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF 213 (450)
T ss_dssp CSC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHH
T ss_pred CCC-----------------HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChh
Confidence 211 11111222223333444444443333322 1222
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHHHCC-CCCCHHH-HH-HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHH
Q 043955 530 LWTSMINANGL--HGRGKVAIDLFYKMEAES-FAPDHIT-FL-ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYAC 604 (835)
Q Consensus 530 ~~~~li~~~~~--~g~~~~Al~l~~~m~~~g-~~Pd~~t-~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~ 604 (835)
.-..+..++.+ ..+.+.|..++....... ..++... .. .+.......+..+.+..++...... + .+.....-
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~w 290 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIER 290 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHH
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-c--cchHHHHH
Confidence 22222233322 246667777777765532 2222221 11 2222334455667777776655433 1 23333333
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCH-HHHH-HHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSMQIEPTA-EVWC-ALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m~~~p~~-~~~~-~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
.+....+.|++..+..+++.|+-.|.. .-|. -+..+....|+.+.|...++.+-. .| ..|-.|+
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LA 356 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVA 356 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHH
Confidence 444455678888888888888655432 2232 234566677888888888887764 32 3565554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.75 E-value=1.1 Score=35.91 Aligned_cols=65 Identities=5% Similarity=-0.068 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHh---hcCchhHHHHHHHHHHhcCCCCC-CchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 629 PTAEVWCALLGACR---VHSNKELGEIVAKKLLELDPGNP-GNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 629 p~~~~~~~ll~a~~---~~~~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|..-+.-.+.++.. ...+.+.|+.+++.+++.+|.+. ..+..|+-.|...|++++|.+..+..-+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444444444433 44677899999999999999775 5778999999999999999999876665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=85.23 E-value=4 Score=32.92 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=9.6
Q ss_pred ChHHHHHHHHHHhhcC
Q 043955 442 LANEALELFYLMNEAN 457 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g 457 (835)
++++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4556666666665544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.48 E-value=7.1 Score=29.17 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=46.9
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 623 RSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 623 ~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
-.+.+-|++.+..+-|.|||.-+|+..|.+.++-+-..--.+.+.|-.+ ..+++-.+.+.|+.
T Consensus 33 ~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi------------lqelkptl~ELGI~ 95 (105)
T d1v54e_ 33 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV------------IQELRPTLNELGIS 95 (105)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH------------HHHHHHHHHHHTCC
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH------------HHHHhhHHHHhCCC
Confidence 3447789999999999999999999999999997765443334455433 24667777777774
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=81.13 E-value=11 Score=30.10 Aligned_cols=43 Identities=16% Similarity=-0.019 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 043955 543 RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMR 590 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (835)
+.++|++.|++..+.| .|.. ...+ +.....+.++|.++|+...
T Consensus 8 d~~~A~~~~~kaa~~g-~~~a--~~~l--~~~~~~~~~~a~~~~~~aa 50 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMFG--CLSL--VSNSQINKQKLFQYLSKAC 50 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--HHHH--HTCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chhh--hhhh--ccccccCHHHHHHHHhhhh
Confidence 4567777777776665 2222 1112 1233445666666665543
|