Citrus Sinensis ID: 044009

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MHHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYMLSWSHKAPSHSSCQPTRPIALSRHRTKRG
Secondary Structure (PSIPRED)
cccccccccccccHHHHccccccccEEEEccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHccccEEEEccHHHHHHHHHcccccEEEccccccccccccccccccccHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHcHHHHccEEccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHEEcccccHHHHHHcccccEEEEEEccccccccccccccEEEEcHHHHHHcccccccHccccccEEcccccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
mhhnminengfkdwkdlwqpklagrismvnspREVIGTVLKYMGvsynsndiGRIAVQQNLALLgnqylpdlnrsdspsrlsyptphlrvsdkqcSIKAIRLSRSridqrltmtdNLSVSITSSLfnslllpptlsrirspymlswshkapshsscqptrpialsrhrtkrg
Flexible Loop (DISEMBL)
mhhnminengfkdwkDLWQPKLAgrismvnsprEVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRLsyptphlrvsdkqcsikairlsrsridqrltMTDNLSVSITSSLFNSLLLPPTLSRIRSPYMLSWSHkapshsscqptrpialsrhrtkrg
Low Complexity Region (SEG)
MHHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYMLSWSHKAPSHSSCQPTRPIALSRHRTKRG
Disordered region (IsUnstruct)
*********GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLP************************CSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYMLSW**************************
Disordered Region (DISOPRED)
MHHNM*NENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYMLSWSHKA**********************
Disordered Region (DISEMBL)
MHHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYMLSW**************PIALSRHRTKRG
Disordered Region (DISPRO)
**HNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYMLSWS*******SCQPTR************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYMLSWSHKAPSHSSCQPTRPIALSRHRTKRG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
224074577	424	predicted protein [Populus trichocarpa]	0.523	0.212	0.442	3e-16
357517389	786	RING-H2 finger protein ATL5F [Medicago t	0.331	0.072	0.666	7e-16
356559069	552	PREDICTED: uncharacterized protein LOC10	0.325	0.101	0.693	8e-16
255557729	507	transporter, putative [Ricinus communis]	0.523	0.177	0.432	3e-15
225427562	553	PREDICTED: uncharacterized protein LOC10	0.331	0.103	0.634	4e-15
297846532	522	hypothetical protein ARALYDRAFT_473635 [	0.517	0.170	0.446	8e-15
147822062	875	hypothetical protein VITISV_021806 [Viti	0.325	0.064	0.645	1e-14
356560607	508	PREDICTED: uncharacterized protein LOC10	0.325	0.110	0.645	3e-14
449455671	549	PREDICTED: uncharacterized protein LOC10	0.325	0.102	0.629	1e-13
28393765	524	unknown protein [Arabidopsis thaliana]	0.517	0.169	0.427	1e-13

>gi|224074577|ref|XP_002304393.1| predicted protein [Populus trichocarpa] gi|222841825|gb|EEE79372.1| predicted protein [Populus trichocarpa]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 14/104 (13%)

Query: 11  FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALL 64
            +DW DLW+P+LAGRISMV+SPREV+G+VLKYMG SYN+ +I      G+ AVQQNLALL
Sbjct: 168 IEDWADLWRPELAGRISMVDSPREVVGSVLKYMGASYNTKNIDLQVPGGKNAVQQNLALL 227

Query: 65  GNQ--------YLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAI 100
           G Q        YL   +  D+   + + +  L ++ +  ++  +
Sbjct: 228 GKQVRLFDSMYYLKTFSMGDAWVAVGWSSDVLPIAKRMSNVAVV 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517389|ref|XP_003628983.1| RING-H2 finger protein ATL5F [Medicago truncatula] gi|355523005|gb|AET03459.1| RING-H2 finger protein ATL5F [Medicago truncatula]

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 48/63 (76%), Gaps = 6/63 (9%)

Query: 11  FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALL 64
            +DW DLW+P LAGRISMV+SPREV+G VLKYMG SYN+NDI      GR AV+ NLALL
Sbjct: 297 IEDWADLWRPDLAGRISMVDSPREVVGAVLKYMGASYNANDINLEVNGGRDAVKHNLALL 356

Query: 65  GNQ 67
             Q
Sbjct: 357 AKQ 359

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559069|ref|XP_003547824.1| PREDICTED: uncharacterized protein LOC100781794 [Glycine max]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 48/62 (77%), Gaps = 6/62 (9%)

Query: 12  KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALLG 65
           +DW DLW+P LAGRISMV+SPREVIG VLKYMG SYN+NDI      GR AV+ NLALL 
Sbjct: 298 EDWADLWRPDLAGRISMVDSPREVIGAVLKYMGASYNTNDINMEVNGGRDAVKHNLALLA 357

Query: 66  NQ 67
            Q
Sbjct: 358 KQ 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557729|ref|XP_002519894.1| transporter, putative [Ricinus communis] gi|223540940|gb|EEF42498.1| transporter, putative [Ricinus communis]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 14/104 (13%)

Query: 11  FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALL 64
            +DW DLW+P L GRISM++SPREV+G VLKYMG SYN+ DI      G+ AVQ+NLAL 
Sbjct: 251 IEDWADLWRPDLKGRISMIDSPREVVGAVLKYMGASYNAKDIELEVHGGKSAVQENLALF 310

Query: 65  GNQ--------YLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAI 100
           G Q        YL      D    + + +  L V+ +  +I  +
Sbjct: 311 GKQVRLFDSMHYLKAFGVGDVWVAVGWSSDVLPVAKRMSNIAVV 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427562|ref|XP_002266662.1| PREDICTED: uncharacterized protein LOC100242504 [Vitis vinifera] gi|296085502|emb|CBI29234.3| unnamed protein product [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 49/63 (77%), Gaps = 6/63 (9%)

Query: 11  FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALL 64
            +DW DLW+P+LAGRISM++SPREV+G VLKYMG SYN+++I      GR AVQQNL LL
Sbjct: 298 IEDWADLWRPELAGRISMIDSPREVVGAVLKYMGASYNTDNIELQVNGGRNAVQQNLMLL 357

Query: 65  GNQ 67
             Q
Sbjct: 358 AKQ 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846532|ref|XP_002891147.1| hypothetical protein ARALYDRAFT_473635 [Arabidopsis lyrata subsp. lyrata] gi|297336989|gb|EFH67406.1| hypothetical protein ARALYDRAFT_473635 [Arabidopsis lyrata subsp. lyrata]

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 63/103 (61%), Gaps = 14/103 (13%)

Query: 12  KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALL- 64
           +DW DLW+P+LAGRI+MVNSPREV+G VLKYMG SYN+ D+      GRIAV++NLA L 
Sbjct: 261 EDWADLWRPELAGRIAMVNSPREVVGAVLKYMGASYNTTDLDSQVPGGRIAVEKNLASLM 320

Query: 65  -------GNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAI 100
                   N YL   N  D    + + +  + V+ +  ++  I
Sbjct: 321 KQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVI 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822062|emb|CAN68081.1| hypothetical protein VITISV_021806 [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/62 (64%), Positives = 49/62 (79%), Gaps = 6/62 (9%)

Query: 12  KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALLG 65
           +DW DLW+P+LAGRISM++SPREV+G VLKYMG SYN+++I      GR AVQQNL LL 
Sbjct: 621 EDWADLWRPELAGRISMIDSPREVVGAVLKYMGASYNTDNIELQVNGGRNAVQQNLMLLA 680

Query: 66  NQ 67
            Q
Sbjct: 681 KQ 682

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560607|ref|XP_003548582.1| PREDICTED: uncharacterized protein LOC100809061 [Glycine max]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 46/62 (74%), Gaps = 6/62 (9%)

Query: 12  KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALLG 65
           +DW DLW+P LAGRI MV+SPREV+G VLKYMG SYN+NDI      GR  V+ NLALL 
Sbjct: 254 EDWADLWRPDLAGRILMVDSPREVVGAVLKYMGASYNTNDINAEVNGGRDVVKHNLALLA 313

Query: 66  NQ 67
            Q
Sbjct: 314 KQ 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455671|ref|XP_004145575.1| PREDICTED: uncharacterized protein LOC101211357 [Cucumis sativus] gi|449485058|ref|XP_004157059.1| PREDICTED: uncharacterized protein LOC101230567 [Cucumis sativus]

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 45/62 (72%), Gaps = 6/62 (9%)

Query: 12  KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALLG 65
           +DW DLW P+L GRISMV+SPREVIG VLKYMG SYN+ +I      GR A+ QNL LL 
Sbjct: 291 EDWSDLWCPELRGRISMVDSPREVIGAVLKYMGASYNTENISSQIPGGRDAIHQNLTLLA 350

Query: 66  NQ 67
            Q
Sbjct: 351 KQ 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393765|gb|AAO42292.1| unknown protein [Arabidopsis thaliana]

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 14/103 (13%)

Query: 12  KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALL- 64
           +DW DLW+P+LAGRI+MVNSPREV+G VLKYM  SYN+ D+      GR+AV++NLA L 
Sbjct: 262 EDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEENLASLM 321

Query: 65  -------GNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAI 100
                   N YL   N  D    + + +  + V+ +  ++  I
Sbjct: 322 KQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVI 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2206194	524	AT1G31410 [Arabidopsis thalian	0.325	0.106	0.612	2.6e-14
UNIPROTKB|Q9KS36	366	VC1425 "Spermidine/putrescine	0.279	0.131	0.395	0.00033
TIGR_CMR|VC_1425	366	VC_1425 "spermidine/putrescine	0.279	0.131	0.395	0.00033

TAIR|locus:2206194 AT1G31410 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    12 KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALLG 65
             +DW DLW+P+LAGRI+MVNSPREV+G VLKYM  SYN+ D+      GR+AV++NLA L 
Sbjct:   262 EDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEKNLASLM 321

Query:    66 NQ 67
              Q
Sbjct:   322 KQ 323

GO:0005215 "transporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q9KS36 VC1425 "Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query:     4 NMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSND 51
             +M + N F+ W DLW+P+L G++ +++  REV    L+ +G S NS D
Sbjct:   163 DMYDPNDFQSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTD 210

GO:0015417 "polyamine-transporting ATPase activity" evidence=ISS

GO:0015847 "putrescine transport" evidence=ISS

GO:0015848 "spermidine transport" evidence=ISS

TIGR_CMR|VC_1425 VC_1425 "spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query:     4 NMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSND 51
             +M + N F+ W DLW+P+L G++ +++  REV    L+ +G S NS D
Sbjct:   163 DMYDPNDFQSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTD 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       172   0.00093  108 3  11 22  0.40    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.95u 0.23s 17.18t   Elapsed:  00:00:01
  Total cpu time:  16.95u 0.23s 17.18t   Elapsed:  00:00:01
  Start:  Sat May 11 04:18:27 2013   End:  Sat May 11 04:18:28 2013

GO:0015417 "polyamine-transporting ATPase activity" evidence=ISS

GO:0015847 "putrescine transport" evidence=ISS

GO:0015848 "spermidine transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
COG0687	363	COG0687, PotD, Spermidine/putrescine-binding perip	9e-06
pfam13343	239	pfam13343, SBP_bac_6, Bacterial extracellular solu	7e-05

>gnl|CDD|223759 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 7   NENGFKDWKDLWQP----KLAGR-ISMVNSPREVIGTVLKYMGVSYNSND 51
           +      W DL+ P     L G+ +++++  REV G  L  +G S N+ D
Sbjct: 150 DAPPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTD 199

Length = 363

>gnl|CDD|222057 pfam13343, SBP_bac_6, Bacterial extracellular solute-binding protein

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 12  KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI 52
           K W DL  P+  G+I++     +    +L  +   +  +  
Sbjct: 72  KSWADLLDPEYKGKIALPGPDGDAFNALLLALYKDFGEDGG 112

This family includes bacterial extracellular solute-binding proteins. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
COG0687	363	PotD Spermidine/putrescine-binding periplasmic pro	99.62
PRK09501	348	potD spermidine/putrescine ABC transporter peripla	99.48
PRK10682	370	putrescine transporter subunit: periplasmic-bindin	99.25
PF13343	242	SBP_bac_6: Bacterial extracellular solute-binding	98.78
TIGR03227	367	PhnS 2-aminoethylphosphonate ABC transporter, peri	98.69
TIGR03261	334	phnS2 putative 2-aminoethylphosphonate ABC transpo	98.44
TIGR01254	304	sfuA ABC transporter periplasmic binding protein,	98.26
TIGR01276	309	thiB thiamine ABC transporter, periplasmic binding	98.23
PRK11622	401	hypothetical protein; Provisional	97.88
PRK11205	330	tbpA thiamine transporter substrate binding subuni	97.83
PRK15046	349	2-aminoethylphosphonate ABC transporter substrate-	97.67
COG1840	299	AfuA ABC-type Fe3+ transport system, periplasmic c	96.68
PF13416	281	SBP_bac_8: Bacterial extracellular solute-binding	96.57
TIGR00971	315	3a0106s03 sulfate/thiosulfate-binding protein. Thi	94.11
COG4143	336	TbpA ABC-type thiamine transport system, periplasm	92.31
PRK10852	338	thiosulfate transporter subunit; Provisional	82.65

>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]

Probab=99.62  E-value=2.3e-16  Score=137.94  Aligned_cols=139  Identities=18%  Similarity=0.258  Sum_probs=116.6

Q ss_pred             CCCCCC-CCCCCChHHhhCcc----CCCc-eeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhcccccccc
Q 044009            2 HHNMIN-ENGFKDWKDLWQPK----LAGR-ISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNR   74 (172)
Q Consensus         2 ntd~V~-~~pptSWsDLfDPe----~KGk-IaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~   74 (172)
                      |+++|+ ..+++||++||||+    ++|+ +.++|++++++++++.++|.++|+.+++ +++|+++|.++|| +..+|++
T Consensus       144 n~~~~~~~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a~~~L~~~kp-~~~~~~~  222 (363)
T COG0687         144 NTDKVKDAPPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKAFDLLDKLKP-VNVYWFD  222 (363)
T ss_pred             eccccCCCCCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhCc-ccEEEec
Confidence            788887 24679999999997    8998 9999999999999999999999999988 6999999999999 6667788


Q ss_pred             CCcccc-CCCC--CCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           75 SDSPSR-LSYP--TPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        75 SD~~~~-L~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ++...+ |.++  .++..|||+-..++.       +...-+-.++.|.||+-..+|++.||..+.|..-+|. +|++-
T Consensus       223 ~~~~~~~l~~Gev~~a~~w~g~~~~~~~-------~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~~A~~fInf~~  293 (363)
T COG0687         223 GSQYVQLLANGEVVLAMGWSGDAAAAKA-------AKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVDAAYKFINFLL  293 (363)
T ss_pred             chHHHHHHhcCCEEEEEEeChHHHHHHH-------hhcCCceEEEcCCCCceeeeEeeeeeCCCCCHHHHHHHHHHhh
Confidence            877665 4444  445556666555543       4566667899999999999999999999999999999 88754

>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed

Probab=99.48  E-value=2.3e-14  Score=123.48  Aligned_cols=137  Identities=17%  Similarity=0.219  Sum_probs=108.0

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PS   79 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~   79 (172)
                      |+++|++.+|+||.|||||+|+|+|+|.|++.+++++++.++|++.++.+++ ++++.+.|+++++++..|+  .+. ..
T Consensus       139 N~d~v~~~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~v~~~~--~~~~~~  216 (348)
T PRK09501        139 NSDAIDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFN--SDNPAN  216 (348)
T ss_pred             cHHHcCCCCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhhhhEEEc--CcHHHH
Confidence            7888874578999999999999999999999999999999999999988887 6889999999999999843  333 23


Q ss_pred             cCCCCCC--cceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccccc
Q 044009           80 RLSYPTP--HLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSHK  149 (172)
Q Consensus        80 ~L~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  149 (172)
                      .+.++..  +..|+++...++        . +--+..+++|.||+...++++-||....+..-+|. ++|+..
T Consensus       217 ~l~~Gev~i~~~w~~~~~~~~--------~-~g~~i~~~~P~eG~~~~~~~~~i~k~a~n~e~A~~Fi~~lls  280 (348)
T PRK09501        217 PYMEGEVNLGMIWNGSAFVAR--------Q-AGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLR  280 (348)
T ss_pred             HHHcCCEEEEEeehHHHHHHH--------h-cCCCceEEecCCCcceEEEeeeEECCCCCHHHHHHHHHHHhC
Confidence            3555554  444555543221        1 12345677899999888999999999999999999 888864

>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional

Probab=99.25  E-value=5e-12  Score=109.79  Aligned_cols=144  Identities=14%  Similarity=0.209  Sum_probs=105.6

Q ss_pred             CCCCCCC-----CCCCChHHhhCccCCCc-----eeeecChhHHHHHHHHHcCCCCCCCCHH-H-HHHHHHHHHhhhccc
Q 044009            2 HHNMINE-----NGFKDWKDLWQPKLAGR-----ISMVNSPREVIGTVLKYMGVSYNSNDIG-R-IAVQQNLALLGNQYL   69 (172)
Q Consensus         2 ntd~V~~-----~pptSWsDLfDPe~KGk-----IaMlDd~rDv~g~ALl~LG~s~NT~D~e-l-~kA~a~L~eLkpnVr   69 (172)
                      |+++++.     .||+||++||||+++|+     |++++++.++++.++.++|.++++.+++ + +++.+.|++++++|+
T Consensus       143 N~~~~~~~~G~~~pp~sW~dl~~p~~~~~l~~~g~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~a~~~l~~l~~~v~  222 (370)
T PRK10682        143 NVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIR  222 (370)
T ss_pred             ehHHhcccccCCCCCCCHHHHhCchhhhhhcCCeEEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhchhhE
Confidence            6677652     25799999999976654     8999999999999999999999988876 4 589999999999987


Q ss_pred             cccccCCccccCCCCCCc--ceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccc
Q 044009           70 PDLNRSDSPSRLSYPTPH--LRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSW  146 (172)
Q Consensus        70 ~y~f~SD~~~~L~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  146 (172)
                      .|+ +++....+..+..+  ..++++...++.-   ....++-.+..+++|.||+....+++.||....+..-+|. ++|
T Consensus       223 ~~~-~~~~~~~l~~Gev~~~~~w~~~~~~~~~~---~~~~~~~~~i~~v~P~eG~~~~~d~~~I~k~a~~~e~A~~Fi~f  298 (370)
T PRK10682        223 YFH-SSQYINDLANGDICVAIGWAGDVWQASNR---AKEAKNGVNVSYSIPKEGALAFFDVFAMPADAKNKDEAYQFLNY  298 (370)
T ss_pred             EEc-CcHHHHHHhcCCEEEEEeecHHHHHHHHH---HHhcccCCceEEEECCCcchhheeeeEEECCCCCHHHHHHHHHH
Confidence            633 22222334445443  4445554433211   0011234566788999999999999999999999999999 888


Q ss_pred             ccc
Q 044009          147 SHK  149 (172)
Q Consensus       147 ~~~  149 (172)
                      +-.
T Consensus       299 ~ls  301 (370)
T PRK10682        299 LLR  301 (370)
T ss_pred             HhC
Confidence            863

>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A

Probab=98.78  E-value=4.7e-10  Score=91.29  Aligned_cols=136  Identities=13%  Similarity=0.076  Sum_probs=89.1

Q ss_pred             CCCCCCCCC-CCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCcccc
Q 044009            2 HHNMINENG-FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSR   80 (172)
Q Consensus         2 ntd~V~~~p-ptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~~   80 (172)
                      |+++++..+ |+||+|||||+|+|+|+|.+...+.....+..+..     ....+++.+.|++++.+...++ .++....
T Consensus        62 N~~~~~~~~~P~sw~dL~~p~~~g~i~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~l~~l~~n~~~~~-~~~~~~~  135 (242)
T PF13343_consen   62 NTDKLKERDLPTSWADLLDPKYKGKIALPDPNSDTGLAFLLALAE-----AYGEDAGWEWLRELKANGATFS-SSQAAQA  135 (242)
T ss_dssp             ETTTSSSGGTTSSGGGGGSGGGTTTEEEETTTSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCBSSSC-HHHHHHH
T ss_pred             EhhhcCCCCCCccHHHHHHHHhCCCEEECCccHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhhccccc-chhhhhH
Confidence            788887322 69999999999999999999654444444443333     1114678999999999998855 3334444


Q ss_pred             CCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccccc
Q 044009           81 LSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSHK  149 (172)
Q Consensus        81 L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  149 (172)
                      +..+..++.++..-..-..     .+.+.. +..+++|.+|+....+...++....+-.-+|. ++|+..
T Consensus       136 ~~~Ge~~~~i~~~~~~~~~-----~~~~~~-~i~~v~P~eG~~~~~~~~~i~k~a~~~~~A~~fi~~lls  199 (242)
T PF13343_consen  136 VASGEGAVAIGISWYSRAA-----QAKEKG-PIKFVYPEEGTVVWPDGIAIVKGAPNPEAAKKFINFLLS  199 (242)
T ss_dssp             HHTTSCSEEEEEHHHHHHH-----HHCTTT-TEEEE-TTTGBEEEEEEEEEBTT-STHHHHHHHHHHHTS
T ss_pred             hhCCCceEEEEEehHHHHH-----HhhhcC-CeEEEecCCCcEEEEEEEEEeCCCCCHHHHHHHHHHHCC
Confidence            6666644444333221111     111112 67899999999888888888888877777777 777643

...

>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein

Probab=98.69  E-value=5e-09  Score=91.65  Aligned_cols=132  Identities=11%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHH-----HHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTV-----LKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD   76 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~A-----Ll~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD   76 (172)
                      |+++++ ++|+||+|||||+|+|||+|.|......+.+     +...|.    .+    ++.+.|+++++|+..|+-+++
T Consensus       146 N~d~~~-~~P~sw~DL~~p~~~Gki~~~~p~~s~~~~~~l~~~~~~~G~----~d----~a~~~l~~l~~n~~~~~~~~~  216 (367)
T TIGR03227       146 NPKLLK-SAPASFADLLDADFKGKLAYSNPAQAADGMAVIILAFALFGS----ED----AAFAYLAKLEANNKFHSAGTG  216 (367)
T ss_pred             chhhcC-CCCCCHHHHhChhccCCEeecCCCcCccHHHHHHHHHHHcCC----ch----HHHHHHHHHHhcCCccCCCch
Confidence            788887 6889999999999999999988543322222     222332    12    588999999999877433322


Q ss_pred             cccc-CCCCCCcceeCCchH-HHHHHHhhhhhhhccccccccchhhhHHHh------hhhccCCcccccccCccc-cccc
Q 044009           77 SPSR-LSYPTPHLRVSDKQC-SIKAIRLSRSRIDQRLTMTDNLSVSITSSL------FNSLLLPPTLSRIRSPYM-LSWS  147 (172)
Q Consensus        77 ~~~~-L~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~  147 (172)
                      .... +..+..++. ++... .+..      ...+-.+..+++|.++.-.-      -+.+-|+....|...++. ++|+
T Consensus       217 ~~~~~~~~Gev~i~-~g~~~~~~~~------~~~~g~~i~~~~P~~g~g~~~~~~~~~~~~~I~k~a~n~e~A~~Fidfl  289 (367)
T TIGR03227       217 KLNALLNKGEIAVA-NGDLQMDLAD------AEHGGLNIKIFFPAADAGEPPSAFAIPYAIGLVKGAPNQDAGKKLIDFL  289 (367)
T ss_pred             hHHHHHhcCceEEE-ccHHHHHHHH------HHhcCCCeEEEeecCCCCCCCcccccceeEEEecCCCCHHHHHHHHHHH
Confidence            3222 333433332 12111 1111      11123455666777653222      223344466777777777 7776


Q ss_pred             cc
Q 044009          148 HK  149 (172)
Q Consensus       148 ~~  149 (172)
                      -.
T Consensus       290 ls  291 (367)
T TIGR03227       290 LS  291 (367)
T ss_pred             cC
Confidence            53

This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.

>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein

Probab=98.44  E-value=5.4e-08  Score=83.42  Aligned_cols=130  Identities=14%  Similarity=0.117  Sum_probs=76.8

Q ss_pred             CCCCCCC---CCCCChHHhhCccCCCceeeecChhHHHH-----HHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccc
Q 044009            2 HHNMINE---NGFKDWKDLWQPKLAGRISMVNSPREVIG-----TVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLN   73 (172)
Q Consensus         2 ntd~V~~---~pptSWsDLfDPe~KGkIaMlDd~rDv~g-----~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f   73 (172)
                      |++.++.   .+|+||+|||||+|+|||+|.|-...-.+     ..+...|.         +++.+.|+++++|+..|+-
T Consensus       131 N~~~~~~~g~~~P~sw~dL~~p~~~g~i~~~dp~~s~~~~~~~~~~~~~~G~---------~~~~~~l~~l~~n~~~~~~  201 (334)
T TIGR03261       131 NTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPASSGTGFLDVSAWLQMMGE---------DKGWDYMDKLHKNIAVYTH  201 (334)
T ss_pred             ehHHHHhcCCCCCCChHHhcCHHhcCCEecCCCccchHHHHHHHHHHHHhCh---------HHHHHHHHHHHhccCccCC
Confidence            5555532   25899999999999999999974322211     22223332         2688899999999988664


Q ss_pred             cCCccc-cCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccc
Q 044009           74 RSDSPS-RLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWS  147 (172)
Q Consensus        74 ~SD~~~-~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  147 (172)
                      +++... .+..+...++++-+..++....       +-.+..+++|.+|+....+..-|+....+-..++. ++|+
T Consensus       202 s~~~~~~~v~~Ge~~i~~~~~~~~~~~~~-------~g~~v~~~~P~eG~~~~~~~~ai~k~a~~~e~A~~fidfl  270 (334)
T TIGR03261       202 SGSKPCKLAGMGEFPIGISMAYRALKEKK-------KGAPIDVVFPKEGLGWDIEATAIIKGSKNNDAAKKLVDWS  270 (334)
T ss_pred             CChHHHHHHhCCCceEEEEecHHHHHHHh-------CCCCeEEEecCCCCeeeeeeeEEEcCCCCHHHHHHHHHHH
Confidence            433333 3445555444433333333222       22345567777766555566666666655555555 5554

This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily

Probab=98.26  E-value=1.4e-07  Score=79.73  Aligned_cols=135  Identities=9%  Similarity=-0.056  Sum_probs=77.9

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccc-cccCCcccc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPD-LNRSDSPSR   80 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y-~f~SD~~~~   80 (172)
                      |++.++ .+|+||+||++|+++|||+|.+......+.++......... ..   ++.+.+++++++...+ ...++....
T Consensus       112 n~~~~~-~~P~sw~dL~~~~~~g~i~~~~p~~~~~~~~~~~~~~~~~g-~~---~~~~~~~~L~~~~~~~~~~~~~~~~~  186 (304)
T TIGR01254       112 DKNKLQ-NPPQSLKELVEPEQDLLVIYQDPRTSSPGLGLLLWMQSVYG-ED---DAPQAWKQLRKKTVTVTKGWSEAYGT  186 (304)
T ss_pred             chHHhc-CCCCCHHHHhCHHhcCcEEecCCCCChhHHHHHHHHHHhcC-hH---HHHHHHHHHHhCCeecCCCCHHHHHH
Confidence            778887 67899999999999999999886556666665443333221 12   3445555555442221 122333334


Q ss_pred             CCCCCCcc--eeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           81 LSYPTPHL--RVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        81 L~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      +..+..++  .|+++... +.+.      ++-.+..++++.+|+-...+.+-||....+...+|. ++|+-
T Consensus       187 ~~~Ge~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~g~~~~~~~~ai~k~a~n~e~A~~fi~fll  250 (304)
T TIGR01254       187 FLGGEYDLVLSYATSPAY-HVLF------EKKDNYAALNFSEGHYLQVEGAARLKGAKQPELADKFVQFLL  250 (304)
T ss_pred             HhcCCccEEEEeccchhh-hhhh------ccCCceeEEecCCCCEEEEEEEEEECCCCCHHHHHHHHHHHc
Confidence            55555444  45544311 1111      111234455666666555677778887777777777 66654

The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).

>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein

Probab=98.23  E-value=2.5e-07  Score=78.15  Aligned_cols=135  Identities=10%  Similarity=-0.084  Sum_probs=75.2

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCccccC
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRL   81 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~~L   81 (172)
                      |++.++ .+|+||+|||||+++|+|+|.|.....++.++...-.....  ++..++.++|.+.+..+..  ..++....+
T Consensus       112 n~~~~~-~~P~sw~DL~~~~~~g~i~~~~p~~s~~g~~~~~~~~~~~g--~~~~~~~~~L~~~~~~~~~--~~~~~~~~~  186 (309)
T TIGR01276       112 DKNKLK-NPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYG--DDAPQAWQKLAKKTVTVTK--GWSEAYGLF  186 (309)
T ss_pred             CccccC-CCCCCHHHHhccccCCeEEeeCCCCCcHHHHHHHHHHHHcC--ccHHHHHHHHHHcCceeCC--ChHHHHHHH
Confidence            788886 67899999999999999999886555555443321111110  1122455555544443332  233333345


Q ss_pred             CCCCCcce--eCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           82 SYPTPHLR--VSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        82 ~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ..+..+++  |+++........     ...  +....++.||+-...+.+-||....+..-++. ++|+-
T Consensus       187 ~~Ge~~i~i~~~~~~~~~~~~~-----~~~--~~~~~~~~eG~~~~~~~~ai~k~a~n~e~A~~Fidfll  249 (309)
T TIGR01276       187 LKGESDLVLSYTTSPAYHILEE-----KKD--NYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFLV  249 (309)
T ss_pred             HcCCcCEEEecCCcHHHHhhcc-----cCc--ccceEecCCCCEeEEEEEEEeCCCCCHHHHHHHHHHHc
Confidence            44544444  555543211110     111  12234556776666677777777777777777 67764

This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.

>PRK11622 hypothetical protein; Provisional

Probab=97.88  E-value=3.2e-06  Score=75.13  Aligned_cols=140  Identities=11%  Similarity=-0.006  Sum_probs=82.9

Q ss_pred             CCCCCCCCCCCChHHhhC--ccCCCceeeecCh---hHHHHH-HHHHc-CCCC---CCCCH----H-HHHHHHHHHHhhh
Q 044009            2 HHNMINENGFKDWKDLWQ--PKLAGRISMVNSP---REVIGT-VLKYM-GVSY---NSNDI----G-RIAVQQNLALLGN   66 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfD--Pe~KGkIaMlDd~---rDv~g~-ALl~L-G~s~---NT~D~----e-l~kA~a~L~eLkp   66 (172)
                      |+++++ .+|+||++||+  ++++|||++.+.+   ...+.. ++... |...   ...++    + .+++.+.|+++++
T Consensus       164 N~d~~~-~~P~Sw~dL~~~~~~~~Gk~~~~~p~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~  242 (401)
T PRK11622        164 DSARTP-QPPQSPAELLEWAKANPGRFTYPRPPDFTGTAFLKQLLYELTGDPAALKQPVDKATFARVTAPLWDYLDELHP  242 (401)
T ss_pred             chHhcC-CCCCCHHHHHHHHHHCCCcEecCCCCCCchhHHHHHHHHHhcCChHhhcCCCCHHHHHHhhhHHHHHHHHhCH
Confidence            888997 78999999998  7999999997532   222222 22222 3321   01122    1 2578899999999


Q ss_pred             cc----ccccccCCc-cccCCCCCCcce--eCCchHHHHHHHhhhhhhhccccc--cccchhhhHHHhhhhccCCccccc
Q 044009           67 QY----LPDLNRSDS-PSRLSYPTPHLR--VSDKQCSIKAIRLSRSRIDQRLTM--TDNLSVSITSSLFNSLLLPPTLSR  137 (172)
Q Consensus        67 nV----r~y~f~SD~-~~~L~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  137 (172)
                      ++    +.|.-+... ...+..+..++.  |++... ...+-.|      .++-  -..++.+|+-..++.+-||....+
T Consensus       243 ~~~~~g~~~~~~~~~~~~~~~~GEv~~~~~~~~~~~-~~~~~~g------~~p~~~~~~~~~~G~~~~~~~~~Ipk~a~n  315 (401)
T PRK11622        243 YLWREGKTFPASPAELDQLLADGELDLAMTFNPNHA-QSKIANG------ELPASTRSFVFDDGTIGNTHFVAIPFNANA  315 (401)
T ss_pred             HHHhccccCCCChHHHHHHHHCCCeEEEEecChHHH-HHHHhcC------CCCCceeEEcCCCCeeccceeEEeeCCCCC
Confidence            87    342222111 223444444433  443322 1112111      2222  234566888888999999999999


Q ss_pred             ccCccc-cccccc
Q 044009          138 IRSPYM-LSWSHK  149 (172)
Q Consensus       138 ~~~~~~-~~~~~~  149 (172)
                      ...++. ++|+-.
T Consensus       316 ~~~A~~finfllS  328 (401)
T PRK11622        316 KAGAKVVANFLLS  328 (401)
T ss_pred             HHHHHHHHHHHcC
Confidence            999998 888753

>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional

Probab=97.83  E-value=3.7e-06  Score=72.00  Aligned_cols=30  Identities=13%  Similarity=0.152  Sum_probs=26.4

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecCh
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSP   32 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~   32 (172)
                      |+++++ .+|+||+|||+|+|+|||+|.|..
T Consensus       133 n~~~~~-~~P~sw~DL~~~~~~g~i~~~dp~  162 (330)
T PRK11205        133 DKEKLK-NPPKSLKELVESDQNWKVIYQDPR  162 (330)
T ss_pred             cccccC-CCCCCHHHHhChhhcCCEEecCCC
Confidence            788887 678999999999999999998743

>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional

Probab=97.67  E-value=2.4e-05  Score=67.82  Aligned_cols=59  Identities=20%  Similarity=0.363  Sum_probs=42.4

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhH-----HHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhcccc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPRE-----VIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLP   70 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rD-----v~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~   70 (172)
                      |+++++ .+|+||.|||+|+|+|+|++.+....     ++...+...|     .    +++.+.|+++++++..
T Consensus       141 n~~~~~-~~P~sw~dL~~~~~~gki~~~~p~~s~~g~~~~~~~~~~~G-----~----~~a~~~l~~l~~~~~~  204 (349)
T PRK15046        141 NPKVLK-TAPATWADLLDPKFKGKLQYSTPGQAGDGTAVLLLTFHLMG-----K----DKAFDYLAKLQANNVG  204 (349)
T ss_pred             chhhcc-CCCCCHHHHhCHHhCCCEEecCCCcCccHHHHHHHHHHHhC-----c----hHHHHHHHHHHHhCCC
Confidence            788887 68899999999999999999764322     2222222233     1    2578889999999876

>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]

Probab=96.68  E-value=0.0029  Score=54.14  Aligned_cols=80  Identities=15%  Similarity=0.109  Sum_probs=51.1

Q ss_pred             CCCChHHhhCccCCCceeeecChh-HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCccc--cCCCCCC
Q 044009           10 GFKDWKDLWQPKLAGRISMVNSPR-EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPS--RLSYPTP   86 (172)
Q Consensus        10 pptSWsDLfDPe~KGkIaMlDd~r-Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~--~L~~~~~   86 (172)
                      .|++|.||.||+|||+|.|.+... ...-.++..+    ....+  +++.+.|+.++.|+..+.+.++...  .+..+..
T Consensus       103 ~P~~w~DL~~p~~kg~i~~~~p~~s~~~~~~~~~~----~~~G~--~~~~~~l~~l~~n~~~~~~~~~~~~~~~va~Ge~  176 (299)
T COG1840         103 VPKSWADLAKPEYKGKVQMADPTSSGTAYAALLAL----QAYGE--EKGWAYLKGLAANLATYTGGSSSVVAKVVAGGEA  176 (299)
T ss_pred             CCCCHHHhcCHhhcCCccccCCcccHHHHHHHHHH----HhcCh--HHHHHHHHHHHHhcccccCCCcHHHHHHhhcCCc
Confidence            479999999999999997777332 2222233322    00112  3688889999999887555444333  3556777


Q ss_pred             cceeCCchH
Q 044009           87 HLRVSDKQC   95 (172)
Q Consensus        87 ~~~~s~~~~   95 (172)
                      ++++....+
T Consensus       177 ~vg~~~~~~  185 (299)
T COG1840         177 AVGLGNLYY  185 (299)
T ss_pred             eEEEEeecc
Confidence            766666654

>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A

Probab=96.57  E-value=0.001  Score=54.09  Aligned_cols=96  Identities=13%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             CCCCCCCCCCCChHHhhC--ccCCCceeeecChhHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHHhhhccccccccCCc
Q 044009            2 HHNMINENGFKDWKDLWQ--PKLAGRISMVNSPREVIGTVLKYMGVSYNSN--DIGRIAVQQNLALLGNQYLPDLNRSDS   77 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfD--Pe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~--D~el~kA~a~L~eLkpnVr~y~f~SD~   77 (172)
                      |++.+++.+|++|++|++  ++++|++++.+...+....++.+.|...+..  +++..++.+.++++.++...+....+.
T Consensus       100 n~d~~~~~~p~t~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  179 (281)
T PF13416_consen  100 NKDLLKKAPPKTWDELLEVAKKLKGKYGFPDPASGWMQWALIAGGKSFDDDGTSENFVEALEFLKELYDNGYFYGSGDDA  179 (281)
T ss_dssp             ETTTHSHSGTSSHHHHHHHHHHHTTHEEEESCHHHHHHHHHHHTTSECTEETTSHHHHHHHHHHHHHHHTTSEETSHHHH
T ss_pred             chhhcccCCcccHHHHhhhHHHhcccccccccchhHhhhhhhccCCchhcccCCHHHHHHHHHHHHHHHhcccccchhHH
Confidence            678887447899999999  8999999999887776666666767666443  444678999999999887643211123


Q ss_pred             cccCCCCCCcceeCCchHHH
Q 044009           78 PSRLSYPTPHLRVSDKQCSI   97 (172)
Q Consensus        78 ~~~L~~~~~~~~~s~~~~~~   97 (172)
                      ...+.++..+..+.+...+.
T Consensus       180 ~~~f~~G~~~~~~~~~~~~~  199 (281)
T PF13416_consen  180 RQLFASGKVAMIIGGSWSIS  199 (281)
T ss_dssp             HHHHHTTSESEEEEEGHHHH
T ss_pred             HHHhcCCCeeeecccHhHHH
Confidence            33455666666666555543

...

>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein

Probab=94.11  E-value=0.096  Score=45.77  Aligned_cols=84  Identities=15%  Similarity=0.225  Sum_probs=48.9

Q ss_pred             CCCChHHhhCccCCCceeeecChhHHHHHHHHHc---CCCCCCCCHHHHHHHHHHHHhhhccccccccCC-cccc-C--C
Q 044009           10 GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYM---GVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD-SPSR-L--S   82 (172)
Q Consensus        10 pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~L---G~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD-~~~~-L--~   82 (172)
                      .++||+||++|++  +|+|- +|..+-..++.++   |........+.+++.+.|.++.+|++.|..++. .... +  .
T Consensus       116 ~i~sw~dL~~~~~--kiai~-dp~~sg~~~~~~L~~~g~~~~~~~g~~~~a~~~l~~l~~nv~~~~~~~~~~~~~~v~~G  192 (315)
T TIGR00971       116 QIHDWNDLIKPGV--SVITP-NPKSSGGARWNYLAAWGYALHHNNGDQAKAQQFVTALLKNVEVLDSGARGATNTFVERG  192 (315)
T ss_pred             CCCCHHHHhCCCc--EEEeC-ChhhHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhccccCCCchHHHHHHHHcC
Confidence            4689999999976  57755 4665533333333   443221111134688999999999998443321 1111 2  2


Q ss_pred             CCCCcceeCCchHH
Q 044009           83 YPTPHLRVSDKQCS   96 (172)
Q Consensus        83 ~~~~~~~~s~~~~~   96 (172)
                      +.+..+.|+++...
T Consensus       193 e~dagivy~sda~~  206 (315)
T TIGR00971       193 IGDVLIAWENEALL  206 (315)
T ss_pred             ceeEEEEEcHHHHH
Confidence            44666677777543

This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.

>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]

Probab=92.31  E-value=0.078  Score=48.00  Aligned_cols=61  Identities=23%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQ   67 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpn   67 (172)
                      |+++++ +||+|.+||-.|+|+|+|.+-|-....-|.+++.--.+.-..|    ++.+..++|+.+
T Consensus       137 d~~~~~-~ppksL~dL~~~~y~~~ii~qdPrtSspGl~fLlW~~svyg~d----~~~~~W~kL~~~  197 (336)
T COG4143         137 DKTKLK-NPPKSLKDLVEPEYAGKIIYQDPRTSSPGLGFLLWTISVYGED----GAPEAWAKLADN  197 (336)
T ss_pred             chHHhc-CCcccHHHhcCccccCcEEecCCCCCCccHHHHHHHHHHhccc----cHHHHHHHHHhC
Confidence            678888 7889999999999999999998666677777776555544333    355666666666

>PRK10852 thiosulfate transporter subunit; Provisional

Probab=82.65  E-value=2.5  Score=37.69  Aligned_cols=81  Identities=11%  Similarity=0.108  Sum_probs=42.8

Q ss_pred             CCCChHHhhCccCCCceeeecChhHHHH-H-HHHHcCC--CCCCCCHHHHHHHHHHHHhhhccccccccC-Cccc-cC--
Q 044009           10 GFKDWKDLWQPKLAGRISMVNSPREVIG-T-VLKYMGV--SYNSNDIGRIAVQQNLALLGNQYLPDLNRS-DSPS-RL--   81 (172)
Q Consensus        10 pptSWsDLfDPe~KGkIaMlDd~rDv~g-~-ALl~LG~--s~NT~D~el~kA~a~L~eLkpnVr~y~f~S-D~~~-~L--   81 (172)
                      .|++|+||++|++  +|.|.|-..--.| . .|...|.  .....+++  ++.+.++++.+|+..+..++ .... .+  
T Consensus       133 ~i~sw~DL~~~~~--kI~i~nP~tSg~g~~~~La~~~~~~~~~G~d~~--~a~~~l~~l~~Nv~v~~~~~~~a~~~~v~~  208 (338)
T PRK10852        133 NIHDWNDLVRSDV--KLIFPNPKTSGNARYTYLAAWGAADKADGGDKA--KTEQFMTQFLKNVEVFDTGGRGATTTFAER  208 (338)
T ss_pred             CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHhcCCEecCCCcHHHHHHHHc
Confidence            5789999999985  6998872111111 0 0111111  01112332  58889999999998733222 1211 12  


Q ss_pred             CCCCCcceeCCch
Q 044009           82 SYPTPHLRVSDKQ   94 (172)
Q Consensus        82 ~~~~~~~~~s~~~   94 (172)
                      .+.+..+.|..+-
T Consensus       209 Ge~Dvgi~yesda  221 (338)
T PRK10852        209 GLGDVLISFESEV  221 (338)
T ss_pred             CCccEEEEechHH
Confidence            3445556666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1pot_A	325	POTD, spermidine/putrescine-binding protein; polya	7e-15
4eqb_A	330	Spermidine/putrescine ABC superfamily ATP binding	1e-13
2v84_A	343	Spermidine/putrescine ABC transporter, periplasmi	1e-13
3rpw_A	365	ABC transporter; structural genomics, PSI-biology,	2e-11
3ttn_A	340	Polyamine transport protein; polyamine binding pro	1e-10
3ttm_A	346	Polyamine transport protein; polyamine binding, pu	2e-10
1a99_A	344	POTF, putrescine-binding protein; transport, perip	2e-10
4edp_A	351	ABC transporter, substrate-binding protein; clostr	2e-09
3pu5_A	333	Extracellular solute-binding protein; structural g	9e-09

>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Length = 325

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 4   NMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIA 56
           + ++      W DLW+P+  G + + +  REV    L+ +G S N+ D   I 
Sbjct: 118 DAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIE 170

>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Length = 330

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 11  FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSND 51
            + W DLW+ +    I + +  REV+G  L  +G S NS D
Sbjct: 128 PEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKD 168

>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Length = 343

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 11  FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSND 51
            + W    +  LA R+SM++  REV+G  L  +G + N+ +
Sbjct: 145 ARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKN 185

>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Length = 365

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 7   NENGFKDWKDLW-QPKLAGRISMVNSPREVIGTVLKYMGVSYNSND 51
            +   + W D W   K  GR  M   PR      L   GV+ +   
Sbjct: 152 GDKAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLY 197

>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Length = 340

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 11  FKDWKDLWQPKLA-----GRISMVNSPREVIGTVLKYMGVSYNSND 51
              W  L++P+         ++ ++S  E++   L Y+G+  N++D
Sbjct: 131 IDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHD 176

>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Length = 346

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 9/46 (19%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 11  FKDWKDLWQPKLAGR-----ISMVNSPREVIGTVLKYMGVSYNSND 51
              W  +++P+   +     +S ++SP E++   L Y+G   ++++
Sbjct: 135 VDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDN 180

>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Length = 344

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 11  FKDWKDLWQPKLAGR-----ISMVNSPREVIGTVLKYMGVSYNSND 51
              W  + +P+   +     +S +++P EV  TVL Y+G   NS  
Sbjct: 131 VDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTK 176

>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Length = 351

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 11  FKDWKDLWQPKLAGRISM----VNSPREVIGTVLKYMGVSYNSNDI 52
              W+DLW+P+L  +I++      +   ++    +  GV   +++ 
Sbjct: 153 INSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKTDNG 198

>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Length = 333

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 9   NGFKDWKDLWQPKLAG----RISMVNSPREVIGTVLKYMGVSYNSND 51
            G K WK+  +  +AG    ++   N    V G  +  M      + 
Sbjct: 124 GGVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSG 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
4gl0_A	333	LMO0810 protein; structural genomics, IDP05673, sp	99.45
4eqb_A	330	Spermidine/putrescine ABC superfamily ATP binding	99.26
1pot_A	325	POTD, spermidine/putrescine-binding protein; polya	98.95
4i1d_A	324	ABC transporter substrate-binding protein; structu	98.94
3ttm_A	346	Polyamine transport protein; polyamine binding, pu	98.93
4euo_A	320	ABC transporter, substrate binding protein (polya;	98.86
3rpw_A	365	ABC transporter; structural genomics, PSI-biology,	98.83
3ttn_A	340	Polyamine transport protein; polyamine binding pro	98.74
2v84_A	343	Spermidine/putrescine ABC transporter, periplasmi	98.53
3pu5_A	333	Extracellular solute-binding protein; structural g	98.26
1a99_A	344	POTF, putrescine-binding protein; transport, perip	98.18
3e13_X	322	Putative iron-uptake ABC transport system, peripla	97.65
4edp_A	351	ABC transporter, substrate-binding protein; clostr	97.55
2qry_A	330	Thiamine-binding periplasmic protein; thiamin bind	96.84
3c9h_A	355	ABC transporter, substrate binding protein; struct	96.72
2voz_A	346	FUTA2, periplasmic iron-binding protein; ferric bi	96.12
1xvx_A	312	YFUA; periplasmic iron binding protein, iron bindi	95.92
1q35_A	320	Iron binding protein FBPA; metal binding protein;	95.62
2pt1_A	334	Iron transport protein; C-clamp, iron-binding prot	95.49
1nnf_A	309	Iron-utilization periplasmic protein; iron-binding	95.46
1y9u_A	323	Putative iron binding protein; periplasmic binding	93.36
2hxw_A	237	Major antigenic peptide PEB3; periplasmic binding	92.87
1sbp_A	310	Sulfate-binding protein; 1.70A {Salmonella typhimu	90.11
2gha_A	382	Maltose ABC transporter, periplasmic maltose-BIND	81.68
3csg_A	461	MBP, maltose-binding protein monobody YS1 fusion,	80.5

>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}

Probab=99.45  E-value=4.9e-14  Score=116.80  Aligned_cols=139  Identities=17%  Similarity=0.299  Sum_probs=110.3

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCccc-
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDSPS-   79 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~~~-   79 (172)
                      |+++|+..+++||++||||+++|+|.|.|.+++.+++++.++|.+.++.+++ +.++.+.+.++++++..  +.++... 
T Consensus       122 n~~~~~~~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  199 (333)
T 4gl0_A          122 NKEMFPDKNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKA--IVGDEIKL  199 (333)
T ss_dssp             ETTTCTTCCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHGGGEEE--EESTTHHH
T ss_pred             chhhcccCCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhccccce--ecchhhhh
Confidence            7899985678999999999999999999999999999999999999999987 68899999999999887  4444443 


Q ss_pred             cCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccccc
Q 044009           80 RLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSHK  149 (172)
Q Consensus        80 ~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  149 (172)
                      .+..+...+++...-.+..++..+       -+..+++|.+|+-..++.+-||..+.|..-+|. ++|+-.
T Consensus       200 ~~~~Ge~~~~~~~~~~~~~~~~~~-------~~~~~~~p~eG~~~~~~~~~I~k~a~n~e~A~~fi~flls  263 (333)
T 4gl0_A          200 LMADNEAGVAVTFSGEAAEMLSEN-------EDLEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLK  263 (333)
T ss_dssp             HTSCC-CCEEEEEHHHHHHHHHHC-------TTEEEECCSSCEEEEEEEEECBTTCSCHHHHHHHHHHHHS
T ss_pred             hhhccchheehhhhHHHHHHHhhc-------cccccccCCCCCccccceEEEEcCCCCHHHHHHHHHHhcC
Confidence            355555444444333344333322       245788999999999999999999999999998 888753

>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}

Probab=99.26  E-value=2e-12  Score=106.42  Aligned_cols=135  Identities=19%  Similarity=0.316  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PS   79 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~   79 (172)
                      |++.++ ++|+||++||+++++|+|++.+.+++++++++.+.|.++++.+++ ++++.+.|.++++++..  |+++. ..
T Consensus       120 nkd~~~-~~p~tw~el~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~  196 (330)
T 4eqb_A          120 NETMVD-EAPEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKA--IVADEMKG  196 (330)
T ss_dssp             EGGGCS-SCCCSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHTTGGGEEE--EESTTHHH
T ss_pred             EHHHcC-CCCCCHHHHhChHhcCCeEEecCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhHhhe--eCcHHHHH
Confidence            788887 789999999999999999999999999999999999999998887 68999999999999987  44433 33


Q ss_pred             cCCCCCCcce--eCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           80 RLSYPTPHLR--VSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        80 ~L~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      .+..+..+..  ++++-..++  ..       --...+++|.+++....+.+.||....+..-++. ++|+.
T Consensus       197 ~~~~G~~~~~~~~~~~~~~~~--~~-------~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~  259 (330)
T 4eqb_A          197 YMIQNNVAIGVTFSGEASQML--EK-------NENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFML  259 (330)
T ss_dssp             HHHTTCCSEEEEEHHHHHHHH--HH-------CTTEEEECCTTCEEEEEEEEBCBTTCSCHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEechHHHHHHH--hh-------CCCeEEEeCCCccceEEEEEEEECCCCCHHHHHHHHHHhc
Confidence            3555555544  444333222  11       1233567888888888889999999888877887 77764

>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*

Probab=98.95  E-value=4.6e-10  Score=91.93  Aligned_cols=135  Identities=18%  Similarity=0.252  Sum_probs=94.7

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PS   79 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~   79 (172)
                      |++.+++.||++|++|++++++|+|+|.+...+.++.++...|.++++.+++ .+++.+.|+++++++..|  .++. ..
T Consensus       116 nkd~~~~~p~~tw~dl~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~  193 (325)
T 1pot_A          116 NGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAF--NSDNPAN  193 (325)
T ss_dssp             ETTTSCTTTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHTGGGEEEE--CSSCTHH
T ss_pred             EHHHcCCCCCCCHHHHcCHHhcCcEEEEcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCchHhH
Confidence            7888874567999999999999999999988899999999999998887766 588999999999998773  3332 22


Q ss_pred             cCCCCCCccee--CCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccc
Q 044009           80 RLSYPTPHLRV--SDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWS  147 (172)
Q Consensus        80 ~L~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  147 (172)
                      .+..+..+..+  ++...  .....     ..  ...+++|.+++....+.+.||....+..-++. ++|+
T Consensus       194 ~f~~G~~~~~~~~~~~~~--~~~~~-----~~--~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l  255 (325)
T 1pot_A          194 PYMEGEVNLGMIWNGSAF--VARQA-----GT--PIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFL  255 (325)
T ss_dssp             HHHTTSCSEEEEEHHHHH--HHHTT-----SC--CEEEECCTTCCEEEEEEEBCBTTCTTHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeecHHHH--HHhhc-----CC--CeEEEECCCcceEEEEEEEEECCCCCHHHHHHHHHHH
Confidence            34455554443  43322  11111     11  22345777776556677888887777666666 6665

>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}

Probab=98.94  E-value=1e-10  Score=95.59  Aligned_cols=138  Identities=12%  Similarity=0.076  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCCChHHhhCc-cCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-c
Q 044009            2 HHNMINENGFKDWKDLWQP-KLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-P   78 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDP-e~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~   78 (172)
                      |++.++..+|+||++||++ +++|+|++.+.+..+++.++.+.|.++++.+++ .+++.+.|.++++++..|+-+++. .
T Consensus       112 n~~~~~~~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  191 (324)
T 4i1d_A          112 SQKTFPKDAPNSWVDFWDVKKFPGRRALRNHPIATLEAALMADGVAPDKLYPLDVDRAFKKLEEIKPHITVWWTSGAQSA  191 (324)
T ss_dssp             ETTTCSSCCCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHHHGGGCSEEECSHHHHH
T ss_pred             ehhhcCCCCCCCHHHHhChhhcCCceeccCCchhHHHHHHHhcCCChhhcCHHHHHHHHHHHHHHhhhhhhhccCcchHH
Confidence            7888874468999999999 999999999988999999999999988766654 678999999999999885433322 2


Q ss_pred             ccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           79 SRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        79 ~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ..+..+..+..+.....+......+       .+..+++  +++-...+.+-||....+-.-++. ++|+-
T Consensus       192 ~~~~~Ge~~~~~~~~~~~~~~~~~~-------~~~~~~~--~g~~~~~~~~~i~k~s~~~~~A~~fi~fl~  253 (324)
T 4i1d_A          192 QLLNDGEVDMEMAWNGRVSAVAKEG-------AKVSFTY--NQGILQSTSLCILKGAPNLETAVKFLNEAV  253 (324)
T ss_dssp             HHHHHTSCSEEEEEHHHHHHHHHTT-------CSEEEEE--EEEEEEEEEEEEBTTCTTHHHHHHHHHHHT
T ss_pred             HHHhCCCEEEEecccHHHHHHHhcC-------CCeEEEe--cCeeeeccEEEEECCCCCHHHHHHHHHHHh
Confidence            3344454444443333333322211       1222222  344445556667766666555555 55553

>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A

Probab=98.93  E-value=7.2e-11  Score=97.30  Aligned_cols=134  Identities=15%  Similarity=0.254  Sum_probs=97.5

Q ss_pred             CCCChHHhhCccCCCc-----eeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cccCC
Q 044009           10 GFKDWKDLWQPKLAGR-----ISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PSRLS   82 (172)
Q Consensus        10 pptSWsDLfDPe~KGk-----IaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~~L~   82 (172)
                      +|+||++||+++++|+     +.+++++.+++++++.+.|.++++.+++ ++++.+.|+++++++..  |.++. ...+.
T Consensus       134 ~p~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~  211 (346)
T 3ttm_A          134 PVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTY--FHSSKYISDLA  211 (346)
T ss_dssp             CTTSTHHHHSHHHHHHHTTTCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHGGGCCE--ECSSTHHHHHH
T ss_pred             CCCcHHHHhChhhhccccCCcEEEECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhHhhhe--eCChhHHHHHh
Confidence            7899999999987665     7899999999999999999999988877 68999999999999988  44432 33344


Q ss_pred             CCCCc--ceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           83 YPTPH--LRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        83 ~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ++..+  +.++++-..++.   .......-....+++|.+++....+.+.||....+-.-++. ++|+-
T Consensus       212 ~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~~~s~~~~~A~~fi~fl~  277 (346)
T 3ttm_A          212 NGNICVAIGYSGDIYQAKS---RAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLM  277 (346)
T ss_dssp             HTSCSEEEEEHHHHHHHHH---HHHHHTSSCCCEEECCTTCEEEEEEEEECBTTCSCSHHHHHHHHHHT
T ss_pred             cCCeEEEEeccHHHHHHHH---hhhhcccCCceEEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHHhc
Confidence            44444  444444332221   00111122344566888888888889999999888888887 78875

>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A

Probab=98.86  E-value=2.5e-10  Score=93.75  Aligned_cols=135  Identities=13%  Similarity=0.114  Sum_probs=92.2

Q ss_pred             CCCCCCCCCCCChHHhhCc-cCCCceeeec-ChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccC--C
Q 044009            2 HHNMINENGFKDWKDLWQP-KLAGRISMVN-SPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRS--D   76 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDP-e~KGkIaMlD-d~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~S--D   76 (172)
                      |++.++ ++|+||++||+| +++|+|+|.+ ....+++.++.+.|.++++.+++ .+++.+.|.++++++..  +++  +
T Consensus       108 n~~~~~-~~P~tw~dl~~~~~~~g~i~~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~  184 (320)
T 4euo_A          108 NVDSVS-ACPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIW--WSGGAQ  184 (320)
T ss_dssp             CGGGSS-CCCCSHHHHTCTTTSCSCEEEECSSSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHTTGGGEEE--ECSHHH
T ss_pred             EhhhhC-CCCCCHHHHhChhhCCCcEEEeCCCchHHHHHHHHHcCCChhhcCHHHHHHHHHHHHHhhhceeE--eCCCch
Confidence            788888 588999999998 5999999999 77889999999999998776654 57899999999999954  433  2


Q ss_pred             ccccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           77 SPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        77 ~~~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ....+..+..+..+.....+......+       .+..+++  +++-...+.+-||....+..-++. ++|+-
T Consensus       185 ~~~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~  248 (320)
T 4euo_A          185 SQQLIASAEAPFGSVWNGRMTALEQSG-------VKVETSW--AQNITAADSLVVPKGTKNKDAAMKFIALAT  248 (320)
T ss_dssp             HHHHHHTTSSCEEEEEHHHHHHHHHTT-------CCCEEEE--EEEEEEEEEEECBTTCSCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCEEEEEeecHHHHHHHhCC-------CCeEEEe--cCceeecceEEEECCCCCHHHHHHHHHHHh
Confidence            223355555554444333333222211       1222333  566666677778877777666666 66654

>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}

Probab=98.83  E-value=1.4e-09  Score=90.47  Aligned_cols=138  Identities=14%  Similarity=0.166  Sum_probs=94.5

Q ss_pred             CCCCCCC-CCCCChHHhhCc-cCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCcc
Q 044009            2 HHNMINE-NGFKDWKDLWQP-KLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDSP   78 (172)
Q Consensus         2 ntd~V~~-~pptSWsDLfDP-e~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~~   78 (172)
                      |++.++. .+|++|+|||++ +++|+|++.+.+.++++.++.+.|.++++.++. .+++.+.|+++++++..|+-+.+..
T Consensus       146 nk~~~~~~~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  225 (365)
T 3rpw_A          146 NKDKFKGDKAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLYPIDMDRALKKLKEIKPHVVKWWTTAAQP  225 (365)
T ss_dssp             ETTTSCTTSSCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCTTSCCSCCHHHHHHHHHHHGGGEEEEECSTTHH
T ss_pred             EhhhcCCCCCCCCHHHHhChhhCCCceeCCcCchHHHHHHHHHcCCChhhcCchhHHHHHHHHHHHhhhcccccCCccHH
Confidence            7888873 278999999999 899999999998999999999999998776654 6789999999999998755444333


Q ss_pred             -ccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           79 -SRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        79 -~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                       ..+..+..+..+.....+......+       .+..+++|  ++-...+.+-||....+..-++. ++|+-
T Consensus       226 ~~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~p--g~~~~~~~~~i~k~s~~~~~A~~fi~~l~  288 (365)
T 3rpw_A          226 PQLILDGEADMCLAYTGSMSKLALEG-------APIDLTFN--QGFVYYDFFSIPKGAPNYDNALKLLSWRL  288 (365)
T ss_dssp             HHHHHTTSCSEEEEEHHHHHHHHHHT-------CSEEEEEE--EEEEEEEEEECBTTCTTHHHHHHHHHHHT
T ss_pred             HHHHHcCCeEEEEehhHHHHHHHhCC-------CCeEEeeC--CeeeeceEEEEECCCCCHHHHHHHHHHHc
Confidence             2355555555554333333322211       12233333  44455566777777666666666 66654

>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*

Probab=98.74  E-value=5.4e-10  Score=91.33  Aligned_cols=134  Identities=14%  Similarity=0.214  Sum_probs=95.4

Q ss_pred             CCCChHHhhCccCCCc-----eeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cccCC
Q 044009           10 GFKDWKDLWQPKLAGR-----ISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PSRLS   82 (172)
Q Consensus        10 pptSWsDLfDPe~KGk-----IaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~~L~   82 (172)
                      +|+||++||+++++|+     +.+.+++.+++++++.+.|.++++.+++ ++++.+.|+++++++..  |.++. ...+.
T Consensus       130 ~P~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~  207 (340)
T 3ttn_A          130 PIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSY--FHSSKYISDLA  207 (340)
T ss_dssp             CCCSTHHHHCHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHGGGCCE--ECSSHHHHHHH
T ss_pred             CCccHHHHhChhhhccccCCeEEEECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhHHhhe--eCCchHHHHHh
Confidence            7899999999987765     6899999999999999999999988877 68999999999999987  44432 22344


Q ss_pred             CCCCc--ceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           83 YPTPH--LRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        83 ~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      .+..+  +.++++...++.-   ..-...-....+++|.+++....+.+.||....+..-++. ++|+-
T Consensus       208 ~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~  273 (340)
T 3ttn_A          208 NGNICVAFGYSGDVFQAAAR---AEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLL  273 (340)
T ss_dssp             HTSCSEEEEEHHHHHHHHHH---HHHHTSCCCEEEECCTTCCEEEEEEEECBTTCSCHHHHHHHHHHHT
T ss_pred             cCCeEEEEeccHHHHHHHHh---hhhccCCCceEEEeCCCccceeEEEEEEECCCCCHHHHHHHHHHhc
Confidence            44444  4444443322210   0001112234556788888777888899988888777877 77764

>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}

Probab=98.53  E-value=3.3e-08  Score=82.05  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=86.8

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHH-hhhccccccccCCcc-
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLAL-LGNQYLPDLNRSDSP-   78 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~e-LkpnVr~y~f~SD~~-   78 (172)
                      |++.++ ++|++|++|++++++|+|+|.+.+.+.++.++...|.++++.+++ .+++.+.|++ +++++..  ++++.. 
T Consensus       137 Nkd~~~-~~P~Tw~el~~~~~~g~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~~l~~~~~~--~~~~~~~  213 (343)
T 2v84_A          137 NKKAVP-SYARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNEQELAQAAILVTDHWKPNLVK--FDSDGYA  213 (343)
T ss_dssp             ETTTCC-SCCSSGGGGGCGGGTTSEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHTGGGEEE--ECSSSHH
T ss_pred             EhHhcC-CCCCCHHHHhCHHHcCeEEEECChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhhe--eCchHHH
Confidence            788888 578999999999999999999888889999999999988877765 5788999999 8888776  333322 


Q ss_pred             ccCCCCCCcceeCCchHHHHH-HHhhhhhhhccccccccchh-hhHHHhhhhccCCcccccccCccc-cccc
Q 044009           79 SRLSYPTPHLRVSDKQCSIKA-IRLSRSRIDQRLTMTDNLSV-SITSSLFNSLLLPPTLSRIRSPYM-LSWS  147 (172)
Q Consensus        79 ~~L~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  147 (172)
                      ..+.++..+..+...-.+... +..      +-....+.+|. +++....+.+.||....+..-++. ++|+
T Consensus       214 ~~f~~G~~a~~~~~~~~~~~~~~~~------~~~~~~~~~P~~~g~~~~~~~~~I~~~s~~~~aA~~Fi~~l  279 (343)
T 2v84_A          214 KSFASGDFVVAHGFAEAFFAETPEA------MHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFF  279 (343)
T ss_dssp             HHHHHTSCSEEEECHHHHHHHSCGG------GGGGEEEECCTTTTCEEEEEEEBEETTCSCHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEEEecHHHHHHHHHh------cCCCeeEEeeCccCcceeeeeeEEECCCCCHHHHHHHHHHH
Confidence            234445444444322222110 110      00112233454 444334455666666555544554 5554

>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}

Probab=98.26  E-value=1.1e-07  Score=77.72  Aligned_cols=134  Identities=14%  Similarity=0.075  Sum_probs=84.5

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCce----eeecChh-----HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhcccccc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRI----SMVNSPR-----EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDL   72 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkI----aMlDd~r-----Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~   72 (172)
                      |++.++ ++|+||++||+++++|++    ++.+...     ..+..++...|.+.    ++.+++.+.|+++++++..++
T Consensus       118 nkd~~~-~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~a~~~l~~l~~~~~~~~  192 (333)
T 3pu5_A          118 RPDKIQ-GGVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGY----GDIEASIATLERMKPHIFKFF  192 (333)
T ss_dssp             CTTTST-TCCSSHHHHHHHHHHTTTTTCEEEECGGGTSSHHHHHHHHHHHHSSST----TCHHHHHHHHHHHGGGEEEEE
T ss_pred             chhhcC-CCCCCHHHHhChhhCCCccccccccCCcchhhHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCccccccc
Confidence            889998 689999999999999999    9987432     23444455566622    235689999999999986644


Q ss_pred             ccCCcc-ccCCCCCCcceeCCchHHHHHHHhhhhhhhcccc-ccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           73 NRSDSP-SRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLT-MTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        73 f~SD~~-~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      -+.... ..+.++..+..+.....+......+       .+ ..+++|.+++-...+.+.||... +..-++. ++|+-
T Consensus       193 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g-------~~~~~~~~P~~g~~~~~~~~~i~k~s-~~~~A~~Fi~~l~  263 (333)
T 3pu5_A          193 TAFNDPVVLLTSGEGAIGPGWDGRTFIAEDST-------KGMVKWVDPTEGAVSSGPVMAVVKGG-KEDLAKAFMNYAL  263 (333)
T ss_dssp             CSTTHHHHHHHHTSCSEEEEEHHHHHHHHHHT-------TTSSEEECCTTCCEEECCEEEEBTTS-CHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHcCCEEEEecccHHHHHHHhCC-------CCceeEEcCCCceeeccceEEEeCCC-CHHHHHHHHHHHc
Confidence            333222 2344555454444333333322221       23 34556777766666777777777 6666666 66653

>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1

Probab=98.18  E-value=7.2e-08  Score=79.23  Aligned_cols=136  Identities=15%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             CCCChHHhhCccCCCcee-----eecChhHHHHHHHHHcCCCCCCCCHH-HH-HHHHHHHHhhhccccccccCC-ccccC
Q 044009           10 GFKDWKDLWQPKLAGRIS-----MVNSPREVIGTVLKYMGVSYNSNDIG-RI-AVQQNLALLGNQYLPDLNRSD-SPSRL   81 (172)
Q Consensus        10 pptSWsDLfDPe~KGkIa-----MlDd~rDv~g~ALl~LG~s~NT~D~e-l~-kA~a~L~eLkpnVr~y~f~SD-~~~~L   81 (172)
                      +|++|++|++++++|++.     +.+++.++++.++.+.|.++++.+++ .+ ++.+.++++.+++..  +.++ ....+
T Consensus       130 ~p~tw~el~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~f  207 (344)
T 1a99_A          130 PVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRY--FHSSQYINDL  207 (344)
T ss_dssp             CTTSTHHHHSHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGCCE--ECSSTHHHHH
T ss_pred             CCCCHHHHcCHHhcCCcccccccccCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhccceeE--ecChhHHHHh
Confidence            689999999987777655     77888889999898999998877766 67 899999999998876  3333 23335


Q ss_pred             CCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           82 SYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        82 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ..+..+..+.+.-.+... ......+..-....+.+|.+++....+.+.||....+..-++. ++|+.
T Consensus       208 ~~G~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~  274 (344)
T 1a99_A          208 ANGDICVAIGWAGDVWQA-SNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLL  274 (344)
T ss_dssp             HTTSCSEEEEEHHHHHHH-HHHHHHHTCSCCEEEECCTTCEEEEEEEEECBTTCSCHHHHHHHHHHHH
T ss_pred             hcCCEEEEEEccHHHHHH-HHhccccCCCCceEEEECCCCceeEEEeeEEECCCCCHHHHHHHHHHHc
Confidence            555555555443222221 1110000001122233666665555666777777766655665 56553

>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A

Probab=97.65  E-value=8.6e-06  Score=65.46  Aligned_cols=137  Identities=9%  Similarity=0.123  Sum_probs=79.3

Q ss_pred             CCCC-CCCCCCCChHHhhCccCCCceeeecChhH----HHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC
Q 044009            2 HHNM-INENGFKDWKDLWQPKLAGRISMVNSPRE----VIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD   76 (172)
Q Consensus         2 ntd~-V~~~pptSWsDLfDPe~KGkIaMlDd~rD----v~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD   76 (172)
                      |++. ++..+|++|++|++|+++|+|.+.+....    .+...+...|         .+++.+.++++++++..+....+
T Consensus       109 n~~~~~~~~~p~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G---------~~~a~~~~~~l~~~~~~~~~~~~  179 (322)
T 3e13_X          109 NKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDG---------NKEAKAWAKGVLENLATNPKGGD  179 (322)
T ss_dssp             ETTSCCCCTTCCSGGGGGSGGGTTCEECCCTTSHHHHHHHHHHHHHHC---------HHHHHHHHHHHHHHBSSSCCSSH
T ss_pred             CCccccCCCCCCCHHHHhhhhhcCeEeecCCCCchhHHHHHHHHHhcC---------HHHHHHHHHHHHHhcCcCCCCCc
Confidence            7888 87447899999999999999999875432    2222233334         13688889999998876443322


Q ss_pred             c--cccCCCCCCcceeCCchHHHHHHHhhh--hhhhccccccccchh---hhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           77 S--PSRLSYPTPHLRVSDKQCSIKAIRLSR--SRIDQRLTMTDNLSV---SITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        77 ~--~~~L~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      .  ...+..+..+..+.+.-.+ ..+....  .....-.+...++|.   +++....+.+.|+....+..-++. ++|+-
T Consensus       180 ~~~~~~~~~G~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~~A~~fi~fl~  258 (322)
T 3e13_X          180 RDQARQVFAGEAKFAVMNTYYI-GLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFML  258 (322)
T ss_dssp             HHHHHHHHHTSCSEEEEEHHHH-HHHHTCSSHHHHHHHHTEEEECTTTTTTCBCEEEEEEEEETTCSCHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCcEEeechHHH-HHHHhccccchhccccceeEecCCCCCCCceeeeeeeEEecCCCCHHHHHHHHHHHh
Confidence            1  2335566666666543222 1121110  011111233344666   565555567777776666555665 66654

>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}

Probab=97.55  E-value=9.3e-06  Score=65.67  Aligned_cols=136  Identities=15%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChh----HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccC-C
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPR----EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS-D   76 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~r----Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S-D   76 (172)
                      |++. + .+|++|++|++++++|++.+.+...    ..+.+++...|.++++  ++.+++.+.++++++++..++-+. +
T Consensus       146 nkd~-~-~~p~tw~el~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~G~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~  221 (351)
T 4edp_A          146 DPSA-G-IEINSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKT--DNGEAAFKELEALKPNVVKTYSKSSD  221 (351)
T ss_dssp             CGGG-C-CCCCSGGGGGCGGGTTCEEEECTTSTTHHHHHHHHHHHHTCCHHH--HTTHHHHHHHHHHGGGEEEEECCHHH
T ss_pred             cCCC-C-CCCCCHHHHhChHhcCCeeecCcccccchHHHHHHHHhcCCCCCh--hhHHHHHHHHHHHHHhhhcccCChHH
Confidence            6666 4 6899999999999999999987422    2333444456876643  224689999999999877533222 2


Q ss_pred             ccccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           77 SPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        77 ~~~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ....+.++..+..+.+.-.+......+       ....+.+|.+++-...+.+.||....+..-++. ++|+.
T Consensus       222 ~~~~f~~G~~a~~~~~~~~~~~~~~~~-------~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~  287 (351)
T 4edp_A          222 LANMFSNGEIVAAVASDFAFGTISKAK-------PEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYAL  287 (351)
T ss_dssp             HHHHHHTTSCSEEEEEHHHHHHHHHHC-------TTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCEEEEecCcHHHHHHHhcC-------CCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhc
Confidence            223355666676666544433222111       122334666665555566777766666555555 55553

>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}

Probab=96.84  E-value=0.00028  Score=57.90  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=44.2

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhcccc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLP   70 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~   70 (172)
                      |++.++ ++|++|++|++++++|+|++.+...+.++.++...|.....  +   ++.+.++++++++..
T Consensus       133 Nkd~~~-~~P~Tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~---~a~~~~~~l~~~~~~  195 (330)
T 2qry_A          133 DKNKLK-NPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYG--D---DAPQAWQKLAKKTVT  195 (330)
T ss_dssp             ETTTCS-SCCSSHHHHHHCSSCCCEEEECTTTCHHHHHHHHHHHHHHG--G---GHHHHHHHHHTTEEE
T ss_pred             ehhhcc-CCCCCHHHHHhHHhcCeeEeeCCCCCchHHHHHHHHHHhhC--h---HHHHHHHHHHhcCce
Confidence            788887 58899999999999999999875555555444332221111  1   477788888888765

>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}

Probab=96.72  E-value=5.4e-05  Score=62.85  Aligned_cols=134  Identities=12%  Similarity=0.023  Sum_probs=69.9

Q ss_pred             CCCCCCC-CCCCChHHhhC------ccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhcccccccc
Q 044009            2 HHNMINE-NGFKDWKDLWQ------PKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNR   74 (172)
Q Consensus         2 ntd~V~~-~pptSWsDLfD------Pe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~   74 (172)
                      |++.+++ .+|+||++|++      |+++|+|++.+......+..+....  ...    .+++.+.+++++++...++-+
T Consensus       142 Nk~~~~~~~~P~tw~dL~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~--~~~----~~~a~~~l~~l~~~~~~~~~~  215 (355)
T 3c9h_A          142 HKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRD--QEQ----FGDIWSVIKAMGAAGVKVYST  215 (355)
T ss_dssp             EGGGCSSSCCCCSHHHHHHHHHHTHHHHTTCEEEECTTC-CHHHHHHHHH--HHH----CTTHHHHHHHHHHTTCEEESC
T ss_pred             EHHhcCCCCCCCCHHHHHHHHHhcchhhCCceeecCccccchHHHHHhcc--hhc----cHHHHHHHHHHHhcCCeecCC
Confidence            7777763 36899999999      8999999998754433333332211  000    125778888888753232211


Q ss_pred             C-CccccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccc
Q 044009           75 S-DSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWS  147 (172)
Q Consensus        75 S-D~~~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  147 (172)
                      + +....+..+..+..+..........      .++-.+..+++|.+++-...+.+.|+....+..-++. ++|+
T Consensus       216 ~~~~~~~~~~G~~a~~~~~~~~~~~~~------~~~~~~~~~~~P~~g~~~~~~~~~I~k~s~~~eaA~~Fi~fl  284 (355)
T 3c9h_A          216 SSAILERVSDGRFVLGYNILGSYAADW------ASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFF  284 (355)
T ss_dssp             HHHHHHHHHTTSCSEEEEEEHHHHHHH------HHHCTTEEEECCSSCEEEECCEEEEETTBSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCCeEEEEecchhHHHHH------HhcCCCeeEEecCCCceeeeeEEEEECCCCCHHHHHHHHHHH
Confidence            1 2222344555555553211111111      0111122344666665444556667666655555554 5554

>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*

Probab=96.12  E-value=0.0079  Score=48.91  Aligned_cols=87  Identities=11%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccC--Cccc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS--DSPS   79 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S--D~~~   79 (172)
                      |+|.+++.+|++|++|++++++|+|++.+.. ..++.++...+....  .  .+++.+.++++.+++..+...+  +...
T Consensus       136 Nkd~~~~~~P~tw~dl~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~--g--~~~a~~~~~~l~~~~~~~~~~~~~~~~~  210 (346)
T 2voz_A          136 SRDRVNPADLSTYEALADPQWRGKILVRPSS-NVYNLSLTASRIAIH--G--EPETRRWLQGLVGNFARQPEGNDTAQIR  210 (346)
T ss_dssp             ETTTCCGGGCCCSGGGGSGGGTTTEECCCTT-SHHHHHHHHHHHHHH--C--HHHHHHHHHHHHHTBSSSCCSCHHHHHH
T ss_pred             ehhhcCccCCCCHHHHhhHHhcCcEEecCCC-CcchHHHHHHHHHhh--c--hHHHHHHHHHHHHhcCccccCCcHHHHH
Confidence            7888874478999999999999999987643 233322221111000  0  1367888888888765422222  1223


Q ss_pred             cCCCCCCcceeCCc
Q 044009           80 RLSYPTPHLRVSDK   93 (172)
Q Consensus        80 ~L~~~~~~~~~s~~   93 (172)
                      .+.++..+..+.+.
T Consensus       211 ~f~~G~~a~~~~~~  224 (346)
T 2voz_A          211 AIAAGIGDVAIANS  224 (346)
T ss_dssp             HHHTTSCSEEEEEH
T ss_pred             HHHCCCceEEeccc
Confidence            35566666666544

>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*

Probab=95.92  E-value=0.0022  Score=51.58  Aligned_cols=132  Identities=11%  Similarity=0.018  Sum_probs=67.8

Q ss_pred             CCCCCCC-CCCCChHHhhCccCCCceeeecChhH--HHHHHHHHc-CCCCCCCCHHHHHHHHHHHHhhhccccccccC--
Q 044009            2 HHNMINE-NGFKDWKDLWQPKLAGRISMVNSPRE--VIGTVLKYM-GVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS--   75 (172)
Q Consensus         2 ntd~V~~-~pptSWsDLfDPe~KGkIaMlDd~rD--v~g~ALl~L-G~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S--   75 (172)
                      |++.+++ ++|++|++|++++++|+|++......  .+..++... |       .  +++.+.++++.++...  +.+  
T Consensus       111 nk~~~~~~~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G-------~--~~a~~~~~~l~~~~~~--~~~~~  179 (312)
T 1xvx_A          111 NPEKISEAELPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKG-------E--KATLEWLKAMKTNFTA--YKGNS  179 (312)
T ss_dssp             CTTTSCGGGSCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHC-------H--HHHHHHHHHHHHHEEE--CSSHH
T ss_pred             EhhhccccCCCCCHHHHhCHHhcCCEeeCCCCccHHHHHHHHHHHhC-------c--HHHHHHHHHHHHhCcc--cCCch
Confidence            7888863 36799999999999999998732211  122222222 3       1  2577888888877633  322  


Q ss_pred             CccccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhh---hHHHhhhhccCCcccccccCccc-cccc
Q 044009           76 DSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVS---ITSSLFNSLLLPPTLSRIRSPYM-LSWS  147 (172)
Q Consensus        76 D~~~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~  147 (172)
                      +....+..+..+..+.+.-.+...+....   +.-....+.+|.+   ++....+.+.|+....+..-++. ++|+
T Consensus       180 ~~~~~~~~G~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~~A~~fi~fl  252 (312)
T 1xvx_A          180 TVMKAVNAGQIDGGVIYHYYRFVDQAKTG---ENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWI  252 (312)
T ss_dssp             HHHHHHHTTSSSEEEEETHHHHHHHTTTC---TTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHcCceEEEEecchhHHHHHhhcc---cCCCceEEEccCCCCCcceeeeeeEEEecCCCCHHHHHHHHHHH
Confidence            12223455666665554433322221100   0112222234443   33333455666666555544554 5554

>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A

Probab=95.62  E-value=0.018  Score=46.23  Aligned_cols=87  Identities=11%  Similarity=0.101  Sum_probs=50.4

Q ss_pred             CCCCCCC-CCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC--cc
Q 044009            2 HHNMINE-NGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD--SP   78 (172)
Q Consensus         2 ntd~V~~-~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD--~~   78 (172)
                      |++.++. .+|++|++|++++++|+|++.+.. +.++.++...+....    ..+++.+.++++++++..+.++.+  ..
T Consensus       108 nkd~~~~~~~P~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~----G~~~a~~~~~~l~~~~~~~~~~~~~~~~  182 (320)
T 1q35_A          108 SKDRVGKLPAGFDYLDLAKPEYKGKVCVRSGK-NSYNVSLFAAMIEHY----GIEKTKAFLEGLKANLARKPQGGDRDQV  182 (320)
T ss_dssp             ETTTTCSCCTTCCGGGGGSGGGTTCEECSCTT-SHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTBSSCCCSCHHHHH
T ss_pred             ehHHhhhcCCCCCHHHHhhHHhCCcEEeccCC-CchhHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            7888873 278999999999999999987643 334332221111000    023678888888887654222222  22


Q ss_pred             ccCCCCCCcceeCCc
Q 044009           79 SRLSYPTPHLRVSDK   93 (172)
Q Consensus        79 ~~L~~~~~~~~~s~~   93 (172)
                      ..+.++..+..+.+.
T Consensus       183 ~~f~~G~~a~~~~~~  197 (320)
T 1q35_A          183 KAIKEGICDYSIGNS  197 (320)
T ss_dssp             HHHHHTSCSEEEEET
T ss_pred             HHHHCCCccEEeccH
Confidence            234455555555543

>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A

Probab=95.49  E-value=0.0071  Score=49.05  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC--ccc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD--SPS   79 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD--~~~   79 (172)
                      |++.+++.+|++|++|++++++|+|++.+.. ..++.++...+++.    ....++.+.+.++.+++..+...++  ...
T Consensus       126 nkd~~~~~~p~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~----~g~~~a~~~~~~l~~~~~~~~~~~~~~~~~  200 (334)
T 2pt1_A          126 NKGKVKPEELSTYEELADPKWKGRVIIRSSS-NEYNQSLVASLVVA----DGEESTLAWAKGFVSNFAREPQGNDTAQIE  200 (334)
T ss_dssp             ETTTCCGGGCCCSGGGGSGGGTTCBCCCCTT-SHHHHHHHHHHHHH----HCHHHHHHHHHHHHHTBSSCCCSCHHHHHH
T ss_pred             ecccccccCCCCHHHHhhhhhcCeeEecCCC-CchHHHHHHHHHHc----cChHHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence            7888874468999999999999999987643 34444433222110    1134688888888877643212221  112


Q ss_pred             cCCCCCCcceeCC
Q 044009           80 RLSYPTPHLRVSD   92 (172)
Q Consensus        80 ~L~~~~~~~~~s~   92 (172)
                      .+.++..+..+.+
T Consensus       201 ~f~~G~~a~~~~~  213 (334)
T 2pt1_A          201 AVSSGEADLTLAN  213 (334)
T ss_dssp             HHHHTSCSEEEEE
T ss_pred             HHhcCceeEEecc
Confidence            2445555555544

>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A

Probab=95.46  E-value=0.0078  Score=48.15  Aligned_cols=82  Identities=17%  Similarity=0.054  Sum_probs=49.6

Q ss_pred             CCCCCCC-CCCCChHHhhCccCCCceeeecChh--HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccC--C
Q 044009            2 HHNMINE-NGFKDWKDLWQPKLAGRISMVNSPR--EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS--D   76 (172)
Q Consensus         2 ntd~V~~-~pptSWsDLfDPe~KGkIaMlDd~r--Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S--D   76 (172)
                      |++.+++ ++|++|++|++++++|++++.+...  ..+..++...|.     +   .++.+.|+++.++...  +.+  +
T Consensus       108 Nk~~~~~~~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G-----~---~~a~~~l~~l~~~~~~--~~~~~~  177 (309)
T 1nnf_A          108 DHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKG-----D---KVALNWLKGLKENGKL--YAKNSV  177 (309)
T ss_dssp             ETTTCCGGGSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHC-----H---HHHHHHHHHHHHHEEE--CSSHHH
T ss_pred             ehhhccccCCCCCHHHHhchhhcCeEeecCCCchHHHHHHHHHHhcC-----h---HHHHHHHHHHHHhCCC--CCCCch
Confidence            6787763 3689999999999999999875321  223333333222     1   2578888888877644  322  1


Q ss_pred             ccccCCCCCCcceeCCc
Q 044009           77 SPSRLSYPTPHLRVSDK   93 (172)
Q Consensus        77 ~~~~L~~~~~~~~~s~~   93 (172)
                      ....+.++..+..+.+.
T Consensus       178 ~~~~~~~G~~a~~~~~~  194 (309)
T 1nnf_A          178 ALQAVENGEVPAALINN  194 (309)
T ss_dssp             HHHHHHTTSCSEEEEEH
T ss_pred             HHHHHhcCCccEEEccH
Confidence            22234556666666553

>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A

Probab=93.36  E-value=0.14  Score=41.02  Aligned_cols=80  Identities=13%  Similarity=0.221  Sum_probs=47.0

Q ss_pred             CCC-CCCCCCCCChHHhhCccCCCceeeecChhHH----HHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccC-
Q 044009            2 HHN-MINENGFKDWKDLWQPKLAGRISMVNSPREV----IGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS-   75 (172)
Q Consensus         2 ntd-~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv----~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S-   75 (172)
                      |++ .++ + | +|.+|++++++|+|.+.+.....    +...+...|       .  +++.+.+++++++...+...+ 
T Consensus       112 Nkd~~~~-~-P-tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G-------~--~~a~~~~~~l~~~~~~~~~~~~  179 (323)
T 1y9u_A          112 EKDLKLD-S-F-RYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDG-------A--EATEKWLRGVKANLARKAAGGD  179 (323)
T ss_dssp             ETTCCCC-C-C-BGGGGGCGGGTTCEECCCTTSHHHHHHHHHHHHHHC-------H--HHHHHHHHHHHHHBSSCSCSCH
T ss_pred             cCccccC-C-C-CHHHHhhHHhCCcEeecCCCcHhHHHHHHHHHHHhC-------h--HHHHHHHHHHHHccCcccCCCc
Confidence            788 887 4 4 99999999999999987532211    111122223       1  257777888887764422222 


Q ss_pred             -CccccCCCCCCcceeCCc
Q 044009           76 -DSPSRLSYPTPHLRVSDK   93 (172)
Q Consensus        76 -D~~~~L~~~~~~~~~s~~   93 (172)
                       +....+.++..+..+.+.
T Consensus       180 ~~~~~~~~~G~~a~~~~~~  198 (323)
T 1y9u_A          180 RDVARDILGGICDIGLANA  198 (323)
T ss_dssp             HHHHHHHHTTSCSEEEEEH
T ss_pred             hHHHHHHhCCcceEEEecH
Confidence             222335566666666543

>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*

Probab=92.87  E-value=0.16  Score=38.88  Aligned_cols=70  Identities=19%  Similarity=0.173  Sum_probs=38.1

Q ss_pred             CCCChHHhhCccCCCceeeecCh--h-----HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCccc-cC
Q 044009           10 GFKDWKDLWQPKLAGRISMVNSP--R-----EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPS-RL   81 (172)
Q Consensus        10 pptSWsDLfDPe~KGkIaMlDd~--r-----Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~-~L   81 (172)
                      .++||+|||+|++  ||+|.|..  .     ..+...+..+|      +      .+.+.++++++..|+-++.... .+
T Consensus        94 ~~~sw~dL~~~~~--~i~~~d~~~~~~~~~~g~~~~~~~~~~------~------~~~~~~l~~~~~~~~~~~~~~~~~~  159 (237)
T 2hxw_A           94 KIKGLKDLANKKV--RIVVPEGAGKSNTSGTGVWEDMIGRTQ------D------IKTIQNFRNNIVAFVPNSGSARKLF  159 (237)
T ss_dssp             CCCSHHHHHHSCC--CEEECCCTTSSCCTTTTHHHHHHHTTC------C------HHHHHHHHHTEEEECCCCTTC--CT
T ss_pred             CCCCHHHhcCCCc--EEEecCCCCCCcccchHHHHHHHHHcc------C------HHHHHHHhhceEEEcCCHHHHHHHH
Confidence            4789999999976  79998742  1     12221111112      1      2446678888866444444433 25


Q ss_pred             CCCCCc--ceeCCc
Q 044009           82 SYPTPH--LRVSDK   93 (172)
Q Consensus        82 ~~~~~~--~~~s~~   93 (172)
                      ..+...  +.|+++
T Consensus       160 ~~g~~~~g~~~~~~  173 (237)
T 2hxw_A          160 AQDQADAWITWIDW  173 (237)
T ss_dssp             TTTTCSEEEEEHHH
T ss_pred             HcCCeeEEEEechh
Confidence            544433  445443

>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1

Probab=90.11  E-value=0.44  Score=37.81  Aligned_cols=58  Identities=14%  Similarity=0.127  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHH-----HHH----HHcCCCCCCCCHHHHHHHHHHHHhhhcccc
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIG-----TVL----KYMGVSYNSNDIGRIAVQQNLALLGNQYLP   70 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g-----~AL----l~LG~s~NT~D~el~kA~a~L~eLkpnVr~   70 (172)
                      |++. . .+|++|++|++|++  +|++.+....-.+     .++    ...|.     ++  +++.+.++++++++..
T Consensus       102 n~~~-~-~~p~tw~dL~~~~~--ki~~~~p~~~~~~~~~~~~~~~~~~~~~gg-----~~--~~a~~~l~~l~~~~~~  168 (310)
T 1sbp_A          102 RKGN-P-KQIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNN-----DQ--AKAEDFVKALFKNVEV  168 (310)
T ss_dssp             ETTC-T-TCCCSGGGGGSTTC--CEECCCTTTCHHHHHHHHHHHHHHHHHTTT-----CH--HHHHHHHHHHHHTEEE
T ss_pred             eCCC-C-CCCCCHHHHcCccc--eEecCCCcccchhHHHHHHHHHHHHHHcCC-----CH--HHHHHHHHHHHhcCcc
Confidence            5554 2 46899999999987  7888763211111     111    23443     22  3688888999888765

>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*

Probab=81.68  E-value=0.85  Score=37.57  Aligned_cols=65  Identities=14%  Similarity=0.077  Sum_probs=40.0

Q ss_pred             CCCCCCCCCCCChHHhhC--ccCC-----CceeeecChhHHHH--HHHHHcCCCCC-------------CCCHHHHHHHH
Q 044009            2 HHNMINENGFKDWKDLWQ--PKLA-----GRISMVNSPREVIG--TVLKYMGVSYN-------------SNDIGRIAVQQ   59 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfD--Pe~K-----GkIaMlDd~rDv~g--~ALl~LG~s~N-------------T~D~el~kA~a   59 (172)
                      |+|.++ ++|++|++|++  ++++     |++.+.....+.+.  ..+...|....             -.+++..++.+
T Consensus       116 Nkdl~~-~~P~Twdel~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~  194 (382)
T 2gha_A          116 NKDYVP-EPPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVK  194 (382)
T ss_dssp             ETTTCS-SCCSBHHHHHHHHHHHHHHTTTSSEEEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHH
T ss_pred             ehhhcc-CCchhHHHHHHHHHHHhccCCCCeeeEEecCcchHHHHHHHHhCCCeeeccCCCCccccccccCCHHHHHHHH
Confidence            789998 58899999998  4554     77777655444333  22334454321             12344466777


Q ss_pred             HHHHhhhc
Q 044009           60 NLALLGNQ   67 (172)
Q Consensus        60 ~L~eLkpn   67 (172)
                      .++++.++
T Consensus       195 ~~~~l~~~  202 (382)
T 2gha_A          195 LLKRLVDE  202 (382)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            77777653

>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*

Probab=80.50  E-value=0.81  Score=39.19  Aligned_cols=64  Identities=17%  Similarity=0.178  Sum_probs=39.2

Q ss_pred             CCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009            2 HHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYN-------------SNDIGRIAVQQNLA   62 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~N-------------T~D~el~kA~a~L~   62 (172)
                      |+|.++ ++|++|++|++  ++++  |++.+.....+.+  ...+...|....             -.+++..++.+.++
T Consensus       116 Nkdl~~-~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~  194 (461)
T 3csg_A          116 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV  194 (461)
T ss_dssp             ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHH
T ss_pred             Ehhhhc-cCCcCHHHHHHHHHHHhhCCCceeEecCCchHHHHHHHHhcCCeEeecccCcccccccCcCCHHHHHHHHHHH
Confidence            789998 68899999999  5555  7777665443333  223334454321             12344567777777


Q ss_pred             Hhhh
Q 044009           63 LLGN   66 (172)
Q Consensus        63 eLkp   66 (172)
                      ++..
T Consensus       195 ~l~~  198 (461)
T 3csg_A          195 DLIK  198 (461)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1pota_	322	Spermidine/putrescine-binding protein PotD {Escher	98.82
d1xvxa_	311	Ferric-binding protein FbpA {Yersinia enterocoliti	97.35
d1q35a_	318	Ferric-binding protein FbpA {Mannheimia haemolytic	97.25
d1y4ta_	317	Ferric-binding protein FbpA {Campylobacter jejuni	96.44
d1a99a_	341	Putrescine receptor (PotF) {Escherichia coli [TaxI	95.85
d1nnfa_	308	Ferric-binding protein FbpA {Haemophilus influenza	95.73
d1y9ua_	318	Ferric-binding protein FbpA {Bordetella pertussis	90.73

>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.1e-09  Score=87.30  Aligned_cols=138  Identities=18%  Similarity=0.248  Sum_probs=105.4

Q ss_pred             CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCcc-c
Q 044009            2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDSP-S   79 (172)
Q Consensus         2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~~-~   79 (172)
                      |++++++.+|++|.+||||+++|++.+.+.+...++.+..+++.+.....+. .....+.++++++++..  |.++.. .
T Consensus       114 n~~~~~~~~p~sw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  191 (322)
T d1pota_         114 NGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAA--FNSDNPAN  191 (322)
T ss_dssp             ETTTSCTTTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHTGGGEEE--ECSSCTHH
T ss_pred             hhhhcCccccCcHHHHhChHhhhcccccCchhhhhHHHHHHhccCccccchhhHHHHHHHHHHhccccce--eecccccc
Confidence            7888976789999999999999999999999999999999999888777776 57888889999999988  433333 3


Q ss_pred             cCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           80 RLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        80 ~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      .+.++..++++.....+......+       -+..+..|.+++....+++-||....+..-++. ++|+-
T Consensus       192 ~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~~g~~~~~~~~~I~k~a~n~~~A~~fi~fl~  254 (322)
T d1pota_         192 PYMEGEVNLGMIWNGSAFVARQAG-------TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLL  254 (322)
T ss_dssp             HHHTTSCSEEEEEHHHHHHHHTTS-------CCEEEECCTTCCEEEEEEEBCBTTCTTHHHHHHHHHHHH
T ss_pred             ccccCcEEEEEEechhHHHHHhhc-------cccceeeccCCceeeeeeeEEecCCCCHHHHHHHHHHHc
Confidence            455666666665555544443332       233456788888888889999998888877777 77753

>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Yersinia enterocolitica, YfuA [TaxId: 630]

Probab=97.35  E-value=2e-05  Score=62.81  Aligned_cols=138  Identities=11%  Similarity=-0.007  Sum_probs=73.3

Q ss_pred             CCCCCCCC-CCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCcccc
Q 044009            2 HHNMINEN-GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSR   80 (172)
Q Consensus         2 ntd~V~~~-pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~~   80 (172)
                      |++.+++. .|++|.+|+||+++|+|++.+......+++..+....   .   .+++.+.++.+++++..+...++....
T Consensus       110 n~~~~~~~~~P~t~~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---g---~~~~~~~~~~l~~~~~~~~~~~~~~~~  183 (311)
T d1xvxa_         110 NPEKISEAELPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELK---G---EKATLEWLKAMKTNFTAYKGNSTVMKA  183 (311)
T ss_dssp             CTTTSCGGGSCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHH---C---HHHHHHHHHHHHHHEEECSSHHHHHHH
T ss_pred             eccccccccCCccHHhhcchhhhcccccchhhhHHHHHHHHHHHhc---C---cHHHHHHHHHhhccccccccchHhhhh
Confidence            78888732 2799999999999999999987655544443332110   0   235777788888887662222222233


Q ss_pred             CCCCCCcceeCCchHHHHHHHhhhhhhhccccccccch---hhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           81 LSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLS---VSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        81 L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      +..+....++......+..   .....+...+....++   -+|+-...+.+-||....+-.-++. ++|+.
T Consensus       184 ~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~I~k~s~n~~~A~~Fi~fl~  252 (311)
T d1xvxa_         184 VNAGQIDGGVIYHYYRFVD---QAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWIT  252 (311)
T ss_dssp             HHTTSSSEEEEETHHHHHH---HTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHHHHHHHHHHHH
T ss_pred             hhCCCcccccchhhHHHHH---HHHhhhccccceeeccccCCCCceeeeeeeeeecCCCCHHHHHHHHHHHc
Confidence            4444444443333222211   1111111122211222   2344344456667777666666666 66654

>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Mannheimia haemolytica [TaxId: 75985]

Probab=97.25  E-value=2.1e-05  Score=62.44  Aligned_cols=140  Identities=8%  Similarity=0.035  Sum_probs=70.3

Q ss_pred             CCCCCCCC-CCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC--cc
Q 044009            2 HHNMINEN-GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD--SP   78 (172)
Q Consensus         2 ntd~V~~~-pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD--~~   78 (172)
                      |+++++.. .|.||.+||+|+++|||+|.+......+..+..++....     .++..+.+..++.+.....+...  ..
T Consensus       108 N~~~~~~~~~p~s~~dl~~~~~kg~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (318)
T d1q35a_         108 SKDRVGKLPAGFDYLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYG-----IEKTKAFLEGLKANLARKPQGGDRDQV  182 (318)
T ss_dssp             ETTTTCSCCTTCCGGGGGSGGGTTCEECSCTTSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTBSSCCCSCHHHHH
T ss_pred             chhhhccccCcchhhhhhhhhccCeEEecCCchhhHHHHHHHHhhccC-----chhHHHHHHHhhhccceeccccchhhh
Confidence            77887732 378999999999999999999766665555554443321     12455555566555444222211  11


Q ss_pred             ccCCCCCCcceeCCchHHHHHHHhh--hhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccc
Q 044009           79 SRLSYPTPHLRVSDKQCSIKAIRLS--RSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWS  147 (172)
Q Consensus        79 ~~L~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  147 (172)
                      .....+.......+. ...-.....  .....+......+.+-+|+-...+.+-|+....+..-++. ++|+
T Consensus       183 ~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~k~a~~~~~A~~fi~fl  253 (318)
T d1q35a_         183 KAIKEGICDYSIGNS-YYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYL  253 (318)
T ss_dssp             HHHHHTSCSEEEEET-HHHHHHHHSTTTHHHHHTEEEECCCSTTCBEEEEEEEEEBTTCTTHHHHHHHHHHH
T ss_pred             hhhhcCccceeeehh-hhHHHHHhhhhhhhhhcccceeccccccccccccceEEEECCCCCHHHHHHHHHHH
Confidence            112222222222221 111111111  2223334444555555555444555555555555555554 4443

>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Campylobacter jejuni [TaxId: 197]

Probab=96.44  E-value=6.8e-05  Score=57.94  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=27.9

Q ss_pred             CCCCChHHhhCccCCCceeeecChhHHHHHHHHHc
Q 044009            9 NGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYM   43 (172)
Q Consensus         9 ~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~L   43 (172)
                      .+|+||.||+||+++|++.+.+.....++..+..+
T Consensus       116 ~~p~tw~dL~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (317)
T d1y4ta_         116 SKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASI  150 (317)
T ss_dssp             TTCCSGGGGGCGGGTTCEECCCTTSHHHHHHHHHH
T ss_pred             cCCCCHHHhccccccCceeeecccchhHHHHHHHH
Confidence            67999999999999999999987666555544433

>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Putrescine receptor (PotF)
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0026  Score=48.37  Aligned_cols=137  Identities=16%  Similarity=0.206  Sum_probs=93.9

Q ss_pred             CCCCChHHhhCccCCC-----ceeeecChhHHHHHHHHHcCCCCCCCCHH--HHHHHHHHHHhhhccccccccC-Ccccc
Q 044009            9 NGFKDWKDLWQPKLAG-----RISMVNSPREVIGTVLKYMGVSYNSNDIG--RIAVQQNLALLGNQYLPDLNRS-DSPSR   80 (172)
Q Consensus         9 ~pptSWsDLfDPe~KG-----kIaMlDd~rDv~g~ALl~LG~s~NT~D~e--l~kA~a~L~eLkpnVr~y~f~S-D~~~~   80 (172)
                      .++++|.+||++++++     ..........++++++.+.|.+++..+..  ...+.+.+.++++++..  +.+ .....
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  204 (341)
T d1a99a_         127 APVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRY--FHSSQYIND  204 (341)
T ss_dssp             CCTTSTHHHHSHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGCCE--ECSSTHHHH
T ss_pred             ccchhhHHHHHHhhhhhcccCCccccccHHHHHHHHHHHcCCCccccchhhHHHHHHHHHHhhcccccc--ccchhhhhh
Confidence            4678999999985443     45556677889999999999999888765  35677788889999887  433 23333


Q ss_pred             CCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009           81 LSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus        81 L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ..++..+......-.+....-.. .....-.+.....|.++.....+.+-||....+...++. ++|+.
T Consensus       205 ~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~s~n~~~A~~fi~fl~  272 (341)
T d1a99a_         205 LANGDICVAIGWAGDVWQASNRA-KEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLL  272 (341)
T ss_dssp             HHTTSCSEEEEEHHHHHHHHHHH-HHHTCSCCEEEECCTTCEEEEEEEEECBTTCSCHHHHHHHHHHHH
T ss_pred             hhcCCeEEEEeehhhHHHHHhhh-hhhccCCccceecCCCceEEEeecceeecCCCChHHHHHHHHHHh
Confidence            44555555554443333333222 222333455667777887778888899998888888887 77764

>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.73  E-value=0.0012  Score=50.89  Aligned_cols=91  Identities=16%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             CCCCCCC-CCCCChHHhhCccCCCceeeecChhHHHHHH---HHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCc
Q 044009            2 HHNMINE-NGFKDWKDLWQPKLAGRISMVNSPREVIGTV---LKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDS   77 (172)
Q Consensus         2 ntd~V~~-~pptSWsDLfDPe~KGkIaMlDd~rDv~g~A---Ll~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~   77 (172)
                      |++.++. ..|.+|.+|+++++++++.+.+.........   +...|         .+.+.+.+.+++.+...+.-+.+.
T Consensus       108 n~~~~~~~~~p~t~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~l~~~~~~~~~~~~~  178 (308)
T d1nnfa_         108 DHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKG---------DKVALNWLKGLKENGKLYAKNSVA  178 (308)
T ss_dssp             ETTTCCGGGSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHC---------HHHHHHHHHHHHHHEEECSSHHHH
T ss_pred             hhhhhcccccccchhhhcChhhcccccccccccchHhhhhHHHHhcC---------cHHHHHHHHHHHHhcccccchHHH
Confidence            4555542 3478999999999999998877544332222   22222         135777888888887663323333


Q ss_pred             cccCCCCCCcceeCCchHHHHHHH
Q 044009           78 PSRLSYPTPHLRVSDKQCSIKAIR  101 (172)
Q Consensus        78 ~~~L~~~~~~~~~s~~~~~~~~~~  101 (172)
                      ...+.++.....+.......+...
T Consensus       179 ~~~~~~g~~~~~~~~~~~~~~~~~  202 (308)
T d1nnfa_         179 LQAVENGEVPAALINNYYWYNLAK  202 (308)
T ss_dssp             HHHHHTTSCSEEEEEHHHHHHHHH
T ss_pred             HHHHHcCcccccccchhHHHHHHh
Confidence            334555555566666555555544

>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Bordetella pertussis [TaxId: 520]

Probab=90.73  E-value=0.066  Score=39.99  Aligned_cols=41  Identities=5%  Similarity=-0.126  Sum_probs=27.2

Q ss_pred             hccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009          108 DQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH  148 (172)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (172)
                      ..-.+.++++|.+|+-...+.+.||....+..-++. ++|+-
T Consensus       216 ~~~~~~~~~~p~~g~~~~~~~~~i~k~a~n~~~A~~Fi~~ll  257 (318)
T d1y9ua_         216 KVVRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLV  257 (318)
T ss_dssp             EEECCBCC----CCBCEEEEEEEEETTCTTHHHHHHHHHHHT
T ss_pred             cccCcccccCCCCCceeeceeeEEecCCCcHHHHHHHHHHhc
Confidence            333455777888888888888888888888777777 77765