Citrus Sinensis ID: 044036

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-----
VMSLLRSFKESLKPCSNFPSNFSQSSSVSQESSNDTLIIPRRPPKSSLAQQLQRLGETYNFSLPQQNPETRREKAPVEKSNVFDDEEKEKEQEQEKFGRHQLGQFQFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFTSEIIESHEEQGQQQERHHCTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRKKIPKG
cccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEccHHHHccccHHHHHHHHHHHHHHccccccEEcccccccHHHHHHHHHHHHHcccccccHHHHccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHccccEEEEEHHHHHHcHHccccccccEEEEcccccccccccHHHHHHHHcccccEEEEcccHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHccccccEEEEEEEcccHHHHHHHHHHHccHHHHHHHHccccccccccccccHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccccccEEEEEcccccccccHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHccccHHHHHcccEEEEcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHccccc
cHHHHHHHHHHccccccccccccccccccccccccHccccccccccccccEEEEcccHHccccccccHHHHHccccccccccccHHHHccccccccccccHHHHHccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccEEEEcHHHHHHcHHHHHHcccEEEEEEcHHHccccHHHHHHHHHHHccccEEEEcccHHHccHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHcccHHHHcccccccHHHHHccHcHccccccccHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEEEccccccEEEEcccEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHcHHHHHHHcccHHcccccccHHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHccccEEEEEHcccccccccHHcccccccccccccccHHHHHHHHHHccccHHHHHHccccccccccEEEEcccccHHHHHHHcccccccccccccHHcHHHHcccccHccccccccccHHHHHHHHHHccccHEHHHHHHHcccHHHHHHHHHHHHHHcccccc
VMSLLRSFKeslkpcsnfpsnfsqsssvsqessndtliiprrppkssLAQQLQRLGetynfslpqqnpetrrekapveksnvfddeEKEKEQEQEKFgrhqlgqfqfdhtgpfeplvlskdgeypiiqvpasincRLLEHQREGVKFLYKLYKnkhggilgddmglgkTIQTIAFLAAVfgkdessdstilkdnkvdkkgyvlIICPSSVIQNWEIEFSRwstfnvsiyhgpnrDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKtrnrigltGTIMQNKIMELYNLfdwvapgslgtrehfREFYdeplkhgqrltapeRFIRIADERKQHLVAVLRKYLLRRTKEEtighlmmgkednvVFCTMSDLQKRAYRRLLQlpeiqclinkdlpcscgspltqvecckrldnldgcdscpfclvlpclVKLQQISNHlelikpnprdepdkqrKDAELasavfgpdidlvggnaqnesfiglsdvksCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRkgysfsrldgstpsnlrqslvddfnsspskqVFLISTRAGGLGLNLVSAnrvvifdpnwnpaqdlqaqdrsfrfgqKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFrdlsdnlfTSEIIESHEEqgqqqerhhctnqgfkGLETHIvsskdsntllstgsktrkssdpemartskplledMGIVyahrnddivnkqpgfqrkkeesipqdlssrpppihskrrnlldcadgkeslasskdrkNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRKKIPKG
vmsllrsfkeslkpcsnfpsnfsqsssvsqESSNDTLIIPRRPPKSSLAQQLQRLGETynfslpqqnpetrrekapveksnvfddeEKEKEQEQEKFGRHQLGQFQFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVfgkdessdstilkdnkvdkkgYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDeplkhgqrlTAPERFIRIADERKQHLVAVLRKYLLRRTKeetighlmmgkednVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLelikpnprdepdKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYsfsrldgstpsNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFTSEIIESHeeqgqqqerHHCTNQGFKGLETHIVsskdsntllstgsktrkssdpemartskplLEDMGIVYAHRNDDIVNKQpgfqrkkeesipqdlssrpppihskrrnlldcadgkeslasskdrkniEYSLLARFMGMDVFEFSKWILSATPSAREKLLqdyrkrkkipkg
VMSLLRSFKESLKPCsnfpsnfsqsssvsqessnDTLIIPRRPPKSSLAQQLQRLGETYNFSLPQQNPETRREKAPVEKSNVFDDeekekeqeqekFGRHQLGQFQFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFTseiiesheeqgqqqeRHHCTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRKKIPKG
******************************************************************************************************GQFQFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKD*****TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELI*******************AVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL**********************QVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFTSEII*************************************************************MGIVYAH********************************************************IEYSLLARFMGMDVFEFSKWILSA*********************
*************************************************************************************************************************GEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDES**********VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNR******LEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK****************ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN**************ECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPR***********LASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV*********************LFGICNLFRDLSDNLF***********************************************************************************************************************************************************************R******
VMSLLRSFKESLKPCSNFP****************TLIIPRRPPKSSLAQQLQRLGETYNFSLPQ*******************************FGRHQLGQFQFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPR*********AELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFTSEIIES***********HCTNQGFKGLETHIVSSKDS*******************RTSKPLLEDMGIVYAHRNDDIVNKQPG****************PPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRKKIPKG
**SLLRSFKESLKPCS*******************************LAQQLQRLGETYNFSLPQ********************************************TGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK****GVQDCKEFQGELFGICNLFRDLSDNLFTSEIIESHEEQGQQQERHHCT*****************NTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPG******************************************RKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRK*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VMSLLRSFKESLKPCSNFPSNFSQSSSVSQESSNDTLIIPRRPPKSSLAQQLQRLGETYNFSLPQQNPETRREKAPVEKSNVFDDEEKEKEQEQEKFGRHQLGQFQFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFTSEIIESHEEQGQQQERHHCTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRKKIPKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query875 2.2.26 [Sep-21-2011]
Q9JIM3699 Putative DNA repair and r no no 0.714 0.894 0.386 1e-125
Q5T890712 Putative DNA repair and r yes no 0.690 0.848 0.385 1e-119
Q03468 1493 DNA excision repair prote no no 0.564 0.330 0.345 6e-89
P403521085 DNA repair and recombinat yes no 0.538 0.434 0.332 2e-81
Q9UR24973 DNA repair protein rhp26 yes no 0.541 0.487 0.312 2e-75
A6QQR4 1242 DNA excision repair prote no no 0.606 0.427 0.312 2e-75
A2BGR3 1451 DNA excision repair prote no no 0.606 0.365 0.308 4e-72
Q2NKX8 1250 DNA excision repair prote no no 0.611 0.428 0.309 4e-72
Q8BHK9 1240 DNA excision repair prote no no 0.577 0.407 0.322 1e-71
P38144 1129 ISWI chromatin-remodeling no no 0.530 0.410 0.330 5e-70
>sp|Q9JIM3|RAD26_MOUSE Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2 Back     alignment and function desciption
 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/658 (38%), Positives = 384/658 (58%), Gaps = 33/658 (5%)

Query: 62  SLPQQNPETRREKAPVEKSNVFDDEEKEKEQEQEKFGRHQLGQFQFDHTGPFEPLVLSKD 121
           ++P Q  +  +      +S +FDD++ EK    ++        FQ           LS+D
Sbjct: 62  TIPLQRLQEVKSTKDYSRSLIFDDKDLEKPYFPDRKIPSLASAFQ-----------LSED 110

Query: 122 GEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFG 181
           G+     +P +IN  L ++QREG +FLY+ Y    G ILGDDMGLGKTIQ I+FLAAV  
Sbjct: 111 GD----SIPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAVLH 166

Query: 182 KDESSDST-------ILKDNK----VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYH 230
           K  + +         +LK  K       K   LI+ P SV+ NW+ E   W  F V++ H
Sbjct: 167 KKGTREDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLH 226

Query: 231 GPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC 290
           G  +D  L +L+    E+ +T++++ R+    L+ + W  +IVDEAHR+KN K+++    
Sbjct: 227 GSKKDNELLRLKQRKCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKARVTEVM 286

Query: 291 LELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPER 350
             +K + RIGLTGT++QN + EL+ + DW  PG LG+R HF++ + +P++HGQR TA +R
Sbjct: 287 KAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKR 346

Query: 351 FIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLP 410
            +    +    L   +  + LRRTK    G L   KED +V+C+++D QK  Y+ +L+  
Sbjct: 347 ELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLP-KKEDRMVYCSLTDFQKAVYQTVLETE 405

Query: 411 EIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKP 470
           ++  ++    PC+CGS   + +CC +  N  G      CL    L  LQ+++NH+ L++ 
Sbjct: 406 DVALILTSSQPCTCGSGQKRRKCCYK-TNSRGDTVRTLCLSY--LTVLQKVANHVALLQA 462

Query: 471 NPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWAS 530
               +  ++     +   VF    D V   +++ +F  LSD K  GKM+ L++L+  +  
Sbjct: 463 ASTSK-HQETVIKRICDRVFSRFPDFVQ-KSKDAAFETLSDPKYSGKMKVLQQLLNHFRK 520

Query: 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590
           + DK+LLFS+S ++LD+L+++ +  G  + RLDGST S  R  +V +FNSS    + L+S
Sbjct: 521 QRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVS 580

Query: 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVY 650
           T AGGLGLN V AN V++FDP WNPA DLQA DR++R GQ R V V RL+S G++EE++Y
Sbjct: 581 TMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMY 640

Query: 651 TRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSD-NLFTSEIIE 707
            RQVYKQQL  + V  +  KRYFE VQ  KE +GELFG+ NLF+  S  +  T +I+E
Sbjct: 641 LRQVYKQQLHCVVVGSENAKRYFEAVQGSKEHRGELFGVHNLFKLRSQGSCLTRDILE 698

Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|Q5T890|RAD26_HUMAN Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=1 SV=1 Back     alignment and function description
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1 Back     alignment and function description
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1 SV=1 Back     alignment and function description
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp26 PE=4 SV=1 Back     alignment and function description
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1 Back     alignment and function description
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1 Back     alignment and function description
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1 Back     alignment and function description
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1 Back     alignment and function description
>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query875
255553699870 conserved hypothetical protein [Ricinus 0.957 0.963 0.707 0.0
302143309874 unnamed protein product [Vitis vinifera] 0.978 0.979 0.728 0.0
147857221874 hypothetical protein VITISV_012795 [Viti 0.978 0.979 0.726 0.0
359485391851 PREDICTED: LOW QUALITY PROTEIN: putative 0.952 0.978 0.717 0.0
224133490843 chromatin remodeling complex subunit [Po 0.934 0.970 0.701 0.0
356544980870 PREDICTED: putative DNA repair and recom 0.969 0.974 0.692 0.0
449444556880 PREDICTED: putative DNA repair and recom 0.865 0.860 0.724 0.0
449475946840 PREDICTED: LOW QUALITY PROTEIN: putative 0.865 0.901 0.724 0.0
42561667862 switch 2 [Arabidopsis thaliana] gi|33218 0.956 0.970 0.655 0.0
4204312874 Hypothetical protein [Arabidopsis thalia 0.956 0.957 0.647 0.0
>gi|255553699|ref|XP_002517890.1| conserved hypothetical protein [Ricinus communis] gi|223542872|gb|EEF44408.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1295 bits (3350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/904 (70%), Positives = 737/904 (81%), Gaps = 66/904 (7%)

Query: 2   MSLLRSFKESLKPCSNFPSNFSQSSSVSQESSND---TLIIPRRPPKSSLAQQLQRLGET 58
           ++  ++ KE+LKPC +     S+S  +++ESS +   T++IPR+PPKS+L+QQLQRLG+ 
Sbjct: 3   IATFKALKETLKPCKST----SKSPFLTEESSQEPEPTIVIPRKPPKSNLSQQLQRLGDF 58

Query: 59  YNFSLPQQN-------------PETRREKAPVEKSNVFDDEEKEKEQEQEKFGRHQLGQF 105
           Y  SLP Q              P++ + +  VEK+     +E++KE+E E F R +LGQF
Sbjct: 59  Y-LSLPHQQSQSQISLTPQTQKPQSLKLQIQVEKNG----KEEDKEREFEDFERPKLGQF 113

Query: 106 QFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMG 165
           QFDHTGPFEPL+LS  GE PI+QVPASINCRLLEHQREGVKFLYKLY+N HGG+LGDDMG
Sbjct: 114 QFDHTGPFEPLLLSLPGEVPIVQVPASINCRLLEHQREGVKFLYKLYRNNHGGVLGDDMG 173

Query: 166 LGKTIQTIAFLAAVFGKD-ESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTF 224
           LGKTIQTIAFLAAV+GKD ES+DST+L+DN+V K+G VLI+CP+SVIQNWEIE SRW+TF
Sbjct: 174 LGKTIQTIAFLAAVYGKDGESTDSTMLRDNQVRKQGPVLIVCPTSVIQNWEIELSRWATF 233

Query: 225 NVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS 284
           NVS+YHG NRD+I EKL+A GVE+LITSFD+YRIHG+ILSE  WEIVIVDEAHRLKNEKS
Sbjct: 234 NVSLYHGANRDLIREKLDAGGVEILITSFDTYRIHGNILSEFKWEIVIVDEAHRLKNEKS 293

Query: 285 KLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQR 344
           KLY ACLE+KT+ RIGLTGTIMQNKIMEL+NLFDWVAPGSLGTREHFREFYDEPLKHGQR
Sbjct: 294 KLYEACLEIKTQKRIGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQR 353

Query: 345 LTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYR 404
            TAPERF+R+ADERK HLVAVL KY+LRRTKEETIGHLM+GKEDNVVFC MS+LQKR Y+
Sbjct: 354 ATAPERFVRVADERKGHLVAVLGKYMLRRTKEETIGHLMLGKEDNVVFCAMSELQKRVYK 413

Query: 405 RLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL------------DNLDGCDSCPFCLVL 452
           R+LQ+P+IQCLINKDLPCSCGSPL QVECCKR+            DN +GCDSCPFCLVL
Sbjct: 414 RMLQIPDIQCLINKDLPCSCGSPLRQVECCKRIVPDGIIWPYLHRDNPEGCDSCPFCLVL 473

Query: 453 PCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDV 512
           PCLVKLQQISNHLELIKPNPRDEPDKQRKDAE ASAVFGPDIDLVGGNAQ ESF+GLSDV
Sbjct: 474 PCLVKLQQISNHLELIKPNPRDEPDKQRKDAEFASAVFGPDIDLVGGNAQTESFMGLSDV 533

Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
           K CGKMRALEKLM SWAS+GDK+LLFSYSVRMLDILEKF+IRKGYSFSRLDGSTP+NLRQ
Sbjct: 534 KHCGKMRALEKLMCSWASRGDKLLLFSYSVRMLDILEKFVIRKGYSFSRLDGSTPTNLRQ 593

Query: 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
           S+VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPA DLQAQDRSFRFGQKR
Sbjct: 594 SMVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAYDLQAQDRSFRFGQKR 653

Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNL 692
           HV+VFRLL+AGS EELVY+RQVYKQQLSNIAVSGK+EKRYFEGVQD K FQGELFGI NL
Sbjct: 654 HVVVFRLLAAGSFEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDSKHFQGELFGIANL 713

Query: 693 FRDLSDNLFTSEIIESHEEQGQQQERHHCTNQGFKGLETHIVSSKDSNTLLSTGSKTRKS 752
           FRDLSD LFTSEIIE HE+QG+       T Q    + ++ +  K     + +G +T + 
Sbjct: 714 FRDLSDKLFTSEIIELHEKQGKDDGHSSVTKQALAEIGSYFLPQKQVGAAILSGRETNRL 773

Query: 753 SDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPPPIHSKRRNL 812
            D + A   KP+LED GI+YAHRN+DI+N  PG ++K   SIPQ++              
Sbjct: 774 RDDDCAAAHKPVLEDSGILYAHRNEDIINLGPGMRKKNAVSIPQNV-------------- 819

Query: 813 LDCADGKESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRK-K 871
                        KDRK  +YS LA+FMGMD  +FSKWILSA+P  RE +LQ ++KRK K
Sbjct: 820 -------------KDRKKTQYSRLAQFMGMDEIDFSKWILSASPLERENVLQKFKKRKNK 866

Query: 872 IPKG 875
           +P G
Sbjct: 867 LPDG 870

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302143309|emb|CBI21870.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147857221|emb|CAN79218.1| hypothetical protein VITISV_012795 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359485391|ref|XP_002274640.2| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair and recombination protein RAD26-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133490|ref|XP_002328055.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222837464|gb|EEE75843.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356544980|ref|XP_003540924.1| PREDICTED: putative DNA repair and recombination protein RAD26-like [Glycine max] Back     alignment and taxonomy information
>gi|449444556|ref|XP_004140040.1| PREDICTED: putative DNA repair and recombination protein RAD26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449475946|ref|XP_004154596.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair and recombination protein RAD26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42561667|ref|NP_171871.2| switch 2 [Arabidopsis thaliana] gi|332189485|gb|AEE27606.1| switch 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4204312|gb|AAD10693.1| Hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query875
TAIR|locus:2024198862 SWI2 "switch 2" [Arabidopsis t 0.866 0.879 0.668 3.4e-299
ASPGD|ASPL00000173341016 AN3811 [Emericella nidulans (t 0.646 0.557 0.423 9.7e-118
UNIPROTKB|G4MNF9 1103 MGG_06945 "Helicase" [Magnapor 0.651 0.516 0.420 1.8e-116
MGI|MGI:1923501699 Ercc6l2 "excision repair cross 0.648 0.811 0.408 1.3e-114
UNIPROTKB|G5E5P9 908 LOC789977 "Uncharacterized pro 0.651 0.627 0.406 3.2e-113
UNIPROTKB|E2RGN3 925 ERCC6L2 "Uncharacterized prote 0.648 0.612 0.407 8.4e-113
UNIPROTKB|F1PQX1 995 ERCC6L2 "Uncharacterized prote 0.648 0.569 0.407 8.4e-113
UNIPROTKB|F1S4L1 928 ERCC6L2 "Uncharacterized prote 0.645 0.608 0.407 4.2e-111
UNIPROTKB|Q5T890712 RAD26L "Putative DNA repair an 0.648 0.796 0.402 1.8e-110
ZFIN|ZDB-GENE-110411-274 1269 si:ch211-248d20.2 "si:ch211-24 0.659 0.454 0.392 1e-109
TAIR|locus:2024198 SWI2 "switch 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2655 (939.7 bits), Expect = 3.4e-299, Sum P(2) = 3.4e-299
 Identities = 534/799 (66%), Positives = 614/799 (76%)

Query:     2 MSLLRSFKESLKPCXXXXXXXXXXXXXXXXXXXDTLIIPRRPPKSSLAQQLQR---LGET 58
             MSLL +FKE+LKPC                        P +   S    +L     L   
Sbjct:     1 MSLLHTFKETLKPCGSFPSSSSLRVSSTQELEPSRK--PPKSSLSQQLLRLDDSYFLPSK 58

Query:    59 YNFSLPQQNPETRREKAPVEKSNV-FDDXXXXXXXXXXX-FGRHQLGQFQFDHTGPFEPL 116
             +   + +   E         K N+ FD+            FGR  L + +FD++GP+EPL
Sbjct:    59 HESKISKTQVEDFDHNEDDHKRNIKFDEEEVDEDDERSIEFGRPGLSRAEFDYSGPYEPL 118

Query:   117 VLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFL 176
             +LS  GE PII VPASINCRLLEHQREGVKF+Y LYKN HGGILGDDMGLGKTIQTIAFL
Sbjct:   119 MLSSIGEIPIIHVPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFL 178

Query:   177 AAVFGKD-ESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTF-NVSIYHGPNR 234
             AAV+GKD ++ +S +L+ +K    G VLIICPSS+I NWE EFSRW++F  VS+YHG NR
Sbjct:   179 AAVYGKDGDAGESCLLESDK----GPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSNR 234

Query:   235 DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294
             DMILEKL+A GVEVL+TSFD++RI G +LS +NWEIVI DEAHRLKNEKSKLY ACLE+K
Sbjct:   235 DMILEKLKARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIK 294

Query:   295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI 354
             T+ RIGLTGT+MQNKI EL+NLF+WVAPGSLGTREHFR+FYDEPLK GQR TAPERF++I
Sbjct:   295 TKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQI 354

Query:   355 ADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQC 414
             AD+RKQHL ++LRKY+LRRTKEETIGHLMMGKEDNVVFC MS LQ+R Y+R++QLPEIQC
Sbjct:   355 ADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQLPEIQC 414

Query:   415 LINKDLPCSCGSPLTQVECCKRL------------DNLDGCDSCPFCLVLPCLVKLQQIS 462
             L+NKD PC+CGSPL Q ECC+R+            DN DGCDSCPFCLVLPCL+KLQQIS
Sbjct:   415 LVNKDNPCACGSPLKQSECCRRIVPDGTIWSYLHRDNHDGCDSCPFCLVLPCLMKLQQIS 474

Query:   463 NHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALE 522
             NHLELIKPNP+DEP+KQ+KDAE  S VFG DIDL+GG + ++SF+ LSDVK CGKMRALE
Sbjct:   475 NHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDLSDVKHCGKMRALE 534

Query:   523 KLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSP 582
             KLM SW SKGDKILLFSYSVRMLDILEKFLIRKGYSF+RLDGSTP+NLRQSLVDDFN+SP
Sbjct:   535 KLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASP 594

Query:   583 SKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642
             SKQVFLIST+AGGLGLNLVSANRVVIFDPNWNP+ DLQAQDRSFR+GQKRHV+VFRLLSA
Sbjct:   595 SKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSA 654

Query:   643 GSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFT 702
             GSLEELVYTRQVYKQQLSNIAV+GK+E RYFEGVQDCKEFQGELFGI NLFRDLSD LFT
Sbjct:   655 GSLEELVYTRQVYKQQLSNIAVAGKMETRYFEGVQDCKEFQGELFGISNLFRDLSDKLFT 714

Query:   703 XXXXXXXXXXXXXXXRHHCTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSK 762
                            +          LET +  S+D         +   S  PEM    K
Sbjct:   715 SDIVELHRDSNIDENKKRSL------LETGV--SEDEKE-----EEVMCSYKPEM---EK 758

Query:   763 PLLEDMGIVYAHRNDDIVN 781
             P+L+D+GIVYAHRN+DI+N
Sbjct:   759 PILKDLGIVYAHRNEDIIN 777
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IDA
ASPGD|ASPL0000017334 AN3811 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MNF9 MGG_06945 "Helicase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
MGI|MGI:1923501 Ercc6l2 "excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G5E5P9 LOC789977 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGN3 ERCC6L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQX1 ERCC6L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4L1 ERCC6L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T890 RAD26L "Putative DNA repair and recombination protein RAD26-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110411-274 si:ch211-248d20.2 "si:ch211-248d20.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query875
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 3e-80
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 2e-70
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 6e-37
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 8e-34
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 3e-27
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 4e-24
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-21
smart0049082 smart00490, HELICc, helicase superfamily c-termina 1e-21
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 1e-19
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 2e-05
COG1204766 COG1204, COG1204, Superfamily II helicase [General 5e-04
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 0.004
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 0.004
pfam11496279 pfam11496, HDA2-3, Class II histone deacetylase co 0.004
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  277 bits (708), Expect = 3e-80
 Identities = 185/611 (30%), Positives = 298/611 (48%), Gaps = 71/611 (11%)

Query: 83  FDDEEKEKEQEQEKFGRHQLGQFQFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQR 142
             D  +  E+   +  +      + +       L LS+D        P  ++  L  +Q 
Sbjct: 287 LADLSQILEKFVRETLKLSARDLKDELKELLAELRLSED--LLNAPEPVDLSAELRPYQL 344

Query: 143 EGVKFLY-KLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGY 201
           EGV +L   L  N  GGIL DDMGLGKT+QTIA L ++    +                 
Sbjct: 345 EGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGP------------ 392

Query: 202 VLIICPSSVIQNWEIEFSRWSTF--NVSIYHGPNRDM---------ILEKLEACGVEVLI 250
            LI+ P+S++ NW+ EF +++     V +YHG   ++         +L+       +V+I
Sbjct: 393 ALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVI 452

Query: 251 TSFDSYRIHG---SILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307
           T+++  R        L ++ W+ V++DEAHR+KN++S    A   LK  NR+ LTGT ++
Sbjct: 453 TTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLE 512

Query: 308 NKIMELYNLFDWVA-PGSLGTREH-FREFYDEPL-KHGQRLTAPERFIRIADERKQHLVA 364
           N++ EL++L      PG LGT    F   +++P+           R + I   RK     
Sbjct: 513 NRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK----- 567

Query: 365 VLRKYLLRRTKEE-TIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCS 423
           +L  ++LRRTKE+  +   +  K + V+ C +S+ Q+  Y  LL+  E            
Sbjct: 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAE-------KNQQL 620

Query: 424 CGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDA 483
                       R+ + +         +L  L +L+QI NH  L+        D      
Sbjct: 621 LEDLEKADSDENRIGDSEL-------NILALLTRLRQICNHPALVDEGLEATFD------ 667

Query: 484 ELASAVFGPDIDLVGGNAQNESFIGLSDVKSC-GKMRALEK-LMYSWASKGD--KILLFS 539
                     I L+    ++  ++    ++   GK++AL++ L+     +G   K+L+FS
Sbjct: 668 ---------RIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFS 718

Query: 540 YSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLN 599
               +LD+LE +L   G  + RLDGSTP+  RQ L+D FN+   ++VFL+S +AGGLGLN
Sbjct: 719 QFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLN 778

Query: 600 LVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQL 659
           L  A+ V++FDP WNPA +LQA DR+ R GQKR V V+RL++ G++EE +   Q  KQ+L
Sbjct: 779 LTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQEL 838

Query: 660 SNIAVSGKLEK 670
            +  +  + EK
Sbjct: 839 LDSLIDAEGEK 849

Length = 866
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 875
KOG0387923 consensus Transcription-coupled repair protein CSB 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
PRK13766773 Hef nuclease; Provisional 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
KOG1123776 consensus RNA polymerase II transcription initiati 100.0
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.97
PHA02558501 uvsW UvsW helicase; Provisional 99.97
KOG0354746 consensus DEAD-box like helicase [General function 99.95
PTZ00110545 helicase; Provisional 99.95
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.94
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.94
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.94
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.94
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.94
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.94
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.94
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.94
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.93
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.93
PTZ00424401 helicase 45; Provisional 99.93
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.93
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.92
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.92
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.91
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.91
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.9
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.9
PRK13767 876 ATP-dependent helicase; Provisional 99.9
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.89
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.89
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.88
PRK106891147 transcription-repair coupling factor; Provisional 99.88
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.87
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.86
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.85
PRK02362 737 ski2-like helicase; Provisional 99.85
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.84
PRK01172674 ski2-like helicase; Provisional 99.83
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.83
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.83
PRK00254720 ski2-like helicase; Provisional 99.83
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.82
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.82
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.82
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.82
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.81
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.8
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.8
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.79
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.79
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.79
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.78
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.78
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.78
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.78
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.77
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.77
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.77
PRK09401 1176 reverse gyrase; Reviewed 99.77
PHA02653675 RNA helicase NPH-II; Provisional 99.77
KOG0347731 consensus RNA helicase [RNA processing and modific 99.75
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.75
KOG4284 980 consensus DEAD box protein [Transcription] 99.74
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.73
COG1205 851 Distinct helicase family with a unique C-terminal 99.73
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.73
PRK05580679 primosome assembly protein PriA; Validated 99.73
COG4096875 HsdR Type I site-specific restriction-modification 99.71
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.71
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.7
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.69
COG1204766 Superfamily II helicase [General function predicti 99.68
KOG0334997 consensus RNA helicase [RNA processing and modific 99.67
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.67
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.67
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.66
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.66
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.65
KOG0346569 consensus RNA helicase [RNA processing and modific 99.64
PRK14701 1638 reverse gyrase; Provisional 99.63
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.62
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.62
COG1202830 Superfamily II helicase, archaea-specific [General 99.61
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.6
KOG0327397 consensus Translation initiation factor 4F, helica 99.59
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.59
COG4889 1518 Predicted helicase [General function prediction on 99.58
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.57
smart00487201 DEXDc DEAD-like helicases superfamily. 99.56
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.55
PRK09694878 helicase Cas3; Provisional 99.55
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.54
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.52
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.52
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.51
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.5
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.47
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.46
smart0049082 HELICc helicase superfamily c-terminal domain. 99.45
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 99.45
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.45
PRK05298652 excinuclease ABC subunit B; Provisional 99.44
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.37
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.34
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.33
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.32
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.31
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.24
PF1477361 VIGSSK: Helicase-associated putative binding domai 99.2
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.18
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.16
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.15
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.08
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.08
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.02
PF11496297 HDA2-3: Class II histone deacetylase complex subun 99.01
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.01
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 99.0
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 98.98
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 98.95
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.92
CHL00122 870 secA preprotein translocase subunit SecA; Validate 98.84
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.79
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 98.74
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.7
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 98.68
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 98.68
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.67
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.6
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 98.57
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 98.56
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.53
PRK15483 986 type III restriction-modification system StyLTI en 98.52
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.5
COG0610962 Type I site-specific restriction-modification syst 98.46
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 98.42
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 98.42
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.4
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 98.39
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.33
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.32
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 98.22
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 98.08
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.06
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 98.0
PF13871278 Helicase_C_4: Helicase_C-like 97.99
KOG0924 1042 consensus mRNA splicing factor ATP-dependent RNA h 97.83
smart00488289 DEXDc2 DEAD-like helicases superfamily. 97.76
smart00489289 DEXDc3 DEAD-like helicases superfamily. 97.76
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.66
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 97.59
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.58
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 97.53
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 97.44
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.22
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 97.17
KOG1803649 consensus DNA helicase [Replication, recombination 97.16
PRK10536262 hypothetical protein; Provisional 97.01
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 97.0
PRK14873665 primosome assembly protein PriA; Provisional 96.87
COG3587 985 Restriction endonuclease [Defense mechanisms] 96.76
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 96.74
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.56
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 96.52
TIGR00376637 DNA helicase, putative. The gene product may repre 96.44
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 96.29
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.28
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 96.22
PRK10875615 recD exonuclease V subunit alpha; Provisional 96.2
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 95.96
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 95.93
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 95.8
KOG1131755 consensus RNA polymerase II transcription initiati 95.69
PRK04296190 thymidine kinase; Provisional 95.59
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 95.4
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 95.17
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 94.95
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 94.72
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 94.59
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 94.34
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 93.85
KOG18051100 consensus DNA replication helicase [Replication, r 93.71
PLN03025319 replication factor C subunit; Provisional 93.52
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 93.37
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 93.31
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 93.24
smart00492141 HELICc3 helicase superfamily c-terminal domain. 93.24
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 92.94
smart00382148 AAA ATPases associated with a variety of cellular 92.9
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 92.61
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 92.24
smart00491142 HELICc2 helicase superfamily c-terminal domain. 92.17
PHA02533534 17 large terminase protein; Provisional 92.12
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 92.05
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 91.79
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 91.73
PRK06526254 transposase; Provisional 91.69
PRK09112351 DNA polymerase III subunit delta'; Validated 91.67
COG3421812 Uncharacterized protein conserved in bacteria [Fun 91.54
CHL00181287 cbbX CbbX; Provisional 91.52
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 91.49
PRK08769319 DNA polymerase III subunit delta'; Validated 91.2
PRK05707328 DNA polymerase III subunit delta'; Validated 91.2
PRK08181269 transposase; Validated 90.67
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 90.56
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 90.42
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 90.33
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 90.03
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 89.86
PRK08116268 hypothetical protein; Validated 89.83
PRK12402337 replication factor C small subunit 2; Reviewed 89.71
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 89.48
COG1484254 DnaC DNA replication protein [DNA replication, rec 89.44
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 89.41
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 88.97
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 88.93
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 88.91
TIGR00595 505 priA primosomal protein N'. All proteins in this f 88.88
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 88.72
PHA02544316 44 clamp loader, small subunit; Provisional 88.66
PF1324576 AAA_19: Part of AAA domain 88.6
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 88.57
PTZ001121164 origin recognition complex 1 protein; Provisional 88.52
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 88.29
PRK07952244 DNA replication protein DnaC; Validated 88.22
PRK00440319 rfc replication factor C small subunit; Reviewed 87.99
PRK138261102 Dtr system oriT relaxase; Provisional 87.61
PRK14974336 cell division protein FtsY; Provisional 87.57
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 87.51
PRK07471365 DNA polymerase III subunit delta'; Validated 87.47
PRK13889988 conjugal transfer relaxase TraA; Provisional 87.42
PRK08727233 hypothetical protein; Validated 87.16
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 87.16
PRK04195482 replication factor C large subunit; Provisional 86.81
cd01124187 KaiC KaiC is a circadian clock protein primarily f 86.8
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 86.65
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 86.61
PRK05580 679 primosome assembly protein PriA; Validated 86.43
PHA03333752 putative ATPase subunit of terminase; Provisional 86.35
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 86.34
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 86.26
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 86.03
PRK07940394 DNA polymerase III subunit delta'; Validated 86.0
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 85.99
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 85.99
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 85.79
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 85.71
TIGR02928365 orc1/cdc6 family replication initiation protein. M 85.48
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 85.43
PRK06871325 DNA polymerase III subunit delta'; Validated 85.26
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 85.23
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 85.0
PRK08084235 DNA replication initiation factor; Provisional 84.98
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 84.72
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 84.51
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 84.35
PRK06835329 DNA replication protein DnaC; Validated 84.25
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 84.16
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 84.02
PF00004132 AAA: ATPase family associated with various cellula 83.83
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 83.74
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 83.65
PRK06921266 hypothetical protein; Provisional 83.16
PRK07993334 DNA polymerase III subunit delta'; Validated 82.91
PRK14087450 dnaA chromosomal replication initiation protein; P 82.59
TIGR00362405 DnaA chromosomal replication initiator protein Dna 82.59
PRK12377248 putative replication protein; Provisional 82.58
PRK00149450 dnaA chromosomal replication initiation protein; R 82.54
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 82.47
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 82.46
PRK06893229 DNA replication initiation factor; Validated 82.34
PRK11823446 DNA repair protein RadA; Provisional 82.33
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 82.16
PTZ00293211 thymidine kinase; Provisional 82.12
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 82.07
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 82.03
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 81.91
PRK08903227 DnaA regulatory inactivator Hda; Validated 81.33
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 81.32
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 81.17
COG0552340 FtsY Signal recognition particle GTPase [Intracell 81.06
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 80.99
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 80.94
PRK05728142 DNA polymerase III subunit chi; Validated 80.42
PF04364137 DNA_pol3_chi: DNA polymerase III chi subunit, HolC 80.22
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 80.12
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-116  Score=982.86  Aligned_cols=658  Identities=37%  Similarity=0.613  Sum_probs=535.2

Q ss_pred             cccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEE
Q 044036          126 IIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLII  205 (875)
Q Consensus       126 ~~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV  205 (875)
                      .+.||..|+..|+|||++||+|||+++.++.|||||||||||||+|+|+||+++++.+             .-.+|+|||
T Consensus       195 ~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~-------------k~~~paLIV  261 (923)
T KOG0387|consen  195 GFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG-------------KLTKPALIV  261 (923)
T ss_pred             cccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc-------------cccCceEEE
Confidence            3789999999999999999999999999999999999999999999999999997653             234999999


Q ss_pred             cCcchHHHHHHHHHHhcC-CcEEEEeCCChh-------------HHHHHHHhCCceEEEeecccccccccccccccccEE
Q 044036          206 CPSSVIQNWEIEFSRWST-FNVSIYHGPNRD-------------MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIV  271 (875)
Q Consensus       206 ~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~-------------~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~V  271 (875)
                      ||++++.||.+||.+|.| ++|.+|||....             ..+......+.+|+||||+.++...+.+..+.|++|
T Consensus       262 CP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~  341 (923)
T KOG0387|consen  262 CPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYV  341 (923)
T ss_pred             ccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEE
Confidence            999999999999999998 999999998652             222222233457999999999999999999999999


Q ss_pred             EEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHH
Q 044036          272 IVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERF  351 (875)
Q Consensus       272 IiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~  351 (875)
                      |+||+|+|||++|+++.+|+++++.+||+||||||||++.|||+|++|+.||.+|+...|.+.|..||..|...+|+..+
T Consensus       342 ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~q  421 (923)
T KOG0387|consen  342 ILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQ  421 (923)
T ss_pred             EecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhH
Q 044036          352 IRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQV  431 (875)
Q Consensus       352 ~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~  431 (875)
                      .+.+++++..|+.++.||+|||+|.++.+..+|.|.|+|+||.||+.|+.+|++++++.++..+++...+|.+|      
T Consensus       422 v~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~G------  495 (923)
T KOG0387|consen  422 VQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSG------  495 (923)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceec------
Confidence            99999999999999999999999999999788999999999999999999999999999999999987666554      


Q ss_pred             HHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCC
Q 044036          432 ECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD  511 (875)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (875)
                                             +..|+++||||.++.....+..  +..           +.              ..+
T Consensus       496 -----------------------i~iLrkICnHPdll~~~~~~~~--~~~-----------D~--------------~g~  525 (923)
T KOG0387|consen  496 -----------------------IDILRKICNHPDLLDRRDEDEK--QGP-----------DY--------------EGD  525 (923)
T ss_pred             -----------------------hHHHHhhcCCcccccCcccccc--cCC-----------Cc--------------CCC
Confidence                                   6889999999999876432111  000           00              045


Q ss_pred             cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036          512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLI-RKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS  590 (875)
Q Consensus       512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~-~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS  590 (875)
                      ++.||||++|.+||..|+..|+|||+|||...|||+|+.+|. ..||.|+++||.|+...|+.+|++||++++.+|||++
T Consensus       526 ~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLT  605 (923)
T KOG0387|consen  526 PKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLT  605 (923)
T ss_pred             hhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEE
Confidence            788999999999999999999999999999999999999999 6899999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCcchh
Q 044036          591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK  670 (875)
Q Consensus       591 t~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~~~~  670 (875)
                      |++||.|||||+||+||||||+|||+.+.||..|||||||+|+|.||||++.|||||+||.||++|+.|.+.++.+..+.
T Consensus       606 TrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~  685 (923)
T KOG0387|consen  606 TRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQR  685 (923)
T ss_pred             ecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhcccccchhhhhcccccccH-HHHHHHHhhccccccccccccccccccccccccccccccccCCccc
Q 044036          671 RYFEGVQDCKEFQGELFGICNLFRDLSDNLFTS-EIIESHEEQGQQQERHHCTNQGFKGLETHIVSSKDSNTLLSTGSKT  749 (875)
Q Consensus       671 r~f~~v~~~~~~~gelfg~~~lf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  749 (875)
                      |||++.+....|....||..+.+...+...+.. +.++.+.....+ ..+   ..++.....    .....--+..+...
T Consensus       686 RfF~~~dl~dLFsl~~~G~~~~~te~~~~~~~~~~~~~lk~~~~~~-~~~---~~~l~~l~~----~~~~~~~~~~~~~~  757 (923)
T KOG0387|consen  686 RFFKGNDLHDLFSLKDFGDDGESTETSSKEVHRNEKVNLKRNSSID-FEE---KEDLLALSK----HSELSSSVSNGSSE  757 (923)
T ss_pred             hhcccccHHHHhCCCCCCcCcchhhhhhhhhhhhHHHHHhhccccc-chh---hhhhhhhcc----ccccccccCchHHH
Confidence            999999999999999999999888877666665 333333221111 011   111111100    00000001111111


Q ss_pred             ccCCCchhcccchhhhhccc--eeeEeeccccccCCccc-chhhhhccC-----CCCCCC-CCCcccc--cccccccCCC
Q 044036          750 RKSSDPEMARTSKPLLEDMG--IVYAHRNDDIVNKQPGF-QRKKEESIP-----QDLSSR-PPPIHSK--RRNLLDCADG  818 (875)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~g--v~y~h~n~~vi~~~~~~-~~~~~~~~~-----~~~~~~-~~~~~~~--~~~~~~~~~~  818 (875)
                      ..-.....++...+||-+.+  |+|.|+|++..|+-..+ ++-+-+...     .+.... ..+-.+.  .+..+.++..
T Consensus       758 ~e~~~~~~~e~~~~ilg~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~n~~~s~dr~~~~~~~~s~~~~~t~~~g~~g~~~  837 (923)
T KOG0387|consen  758 EEVEEAKDREMIKPILGSLSDSVVNNHRNEEEKNIIETEASTSVKRANDALSDDRKLSKRKGCSGEETWTDSSGEAGKVE  837 (923)
T ss_pred             HHHHHHhhhhhhhhhhccchhhhHHhhhhhhhhccccccccchhhhhccccccchhhhhhcccccCcchhhccccCCCcc
Confidence            11011222335678999999  99999999999977654 222222110     011111 0000000  0011111111


Q ss_pred             ccccCCchHHHHHHHHHHHHHcCCChhHHHHHHhhcCHHHHHHHHHHHHHhc
Q 044036          819 KESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRK  870 (875)
Q Consensus       819 ~~~~~~~~~~~~~qf~~~a~~~g~~~~ef~~~~~~~t~~~r~~~l~~~~~~~  870 (875)
                      +     |.+.+.     -+.+-++..+.+.+|+.+|++..|++.|+.+.+..
T Consensus       838 r-----~~~~k~-----~~~~~~~~~~~~t~~~ksa~~~~~~e~~d~~~~~~  879 (923)
T KOG0387|consen  838 R-----PSDYKM-----KIESTANELLNITKDVKSASKNGRQELLDSGLKFS  879 (923)
T ss_pred             c-----Cchhcc-----hhHHHHHHHHHHhhccccccccccHHHHHhhHhhh
Confidence            1     222222     23333445689999999999999999999976655

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14773 VIGSSK: Helicase-associated putative binding domain, C-terminal Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05728 DNA polymerase III subunit chi; Validated Back     alignment and domain information
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2 Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query875
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 1e-59
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 1e-56
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 1e-53
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 2e-34
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 4e-29
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 6e-22
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score =  228 bits (580), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 187/594 (31%), Positives = 278/594 (46%), Gaps = 109/594 (18%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA-AVFGKDES 185
           +Q P      L + Q  G+ ++  L+     GIL D+MGLGKT+QT+AF++  +F + ++
Sbjct: 227 VQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN 286
Query: 186 SDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHG--PNRDMILE--- 239
                         G  +I+ P S +  W   F +W+   N   Y G   +RD I E   
Sbjct: 287 --------------GPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEF 332
Query: 240 -------KLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLE 292
                    +     VL+T+++      + L  + W+ + VDEAHRLKN +S LY +   
Sbjct: 333 YTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNS 392
Query: 293 LKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFI 352
            K  NR+ +TGT +QN I EL  L +++ PG        R   D+ +    +    E +I
Sbjct: 393 FKVANRMLITGTPLQNNIKELAALVNFLMPG--------RFTIDQEIDFENQDEEQEEYI 444
Query: 353 RIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEI 412
                R       ++ ++LRR K++ +   +  K + ++   +SD+Q   Y+ +L     
Sbjct: 445 HDLHRR-------IQPFILRRLKKD-VEKSLPSKTERILRVELSDVQTEYYKNIL----- 491
Query: 413 QCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNP 472
                        S LT            G     F L L  + +L++ SNH     P  
Sbjct: 492 ---------TKNYSALTA-----------GAKGGHFSL-LNIMNELKKASNH-----PYL 525
Query: 473 RDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKG 532
            D  +      E     FG      G   +     GL  + S GKM  L++L+      G
Sbjct: 526 FDNAE------ERVLQKFGD-----GKMTRENVLRGL--IMSSGKMVLLDQLLTRLKKDG 572
Query: 533 DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLIST 591
            ++L+FS  VRMLDIL  +L  KG +F RLDG+ PS  R+  +D FNS  S   VFL+ST
Sbjct: 573 HRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632
Query: 592 RAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYT 651
           RAGGLG+NL++A+ VVIFD +WNP  DLQA  R+ R GQK HV+V+RL+S  ++EE V  
Sbjct: 633 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 692
Query: 652 RQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQ-------GEL-----FGICNLF 693
           R   K  L    +S         GV D  ++        GEL     FG  N+F
Sbjct: 693 RARKKMILEYAIISL--------GVTDGNKYTKKNEPNAGELSAILKFGAGNMF 738
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query875
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-171
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-118
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-116
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 5e-72
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 1e-49
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 6e-36
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 7e-16
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 4e-14
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 7e-04
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 2e-07
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 1e-05
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 1e-05
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 2e-04
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 4e-04
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 4e-04
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
 Score =  509 bits (1312), Expect = e-171
 Identities = 172/615 (27%), Positives = 290/615 (47%), Gaps = 86/615 (13%)

Query: 127 IQVPASINCRLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKTIQTIAFLAAVFG 181
           + V   ++  L  HQREGVKFL+        +N +G I+ D+MGLGKT+Q I  +     
Sbjct: 46  VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIW---- 101

Query: 182 KDESSDSTILKDNKVDK--KGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPNRDMI 237
                  T+LK +   K     V+++ PSS+++NW  E  +W           G ++D I
Sbjct: 102 -------TLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEI 154

Query: 238 LEKLE--------ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMA 289
             KL              +LI S++++R+H  +L +    +VI DE HRLKN  ++ Y+A
Sbjct: 155 DSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLA 214

Query: 290 CLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPE 349
              +  + R+ ++GT +QN ++E ++L  +V  G LGT + F++ ++ P+  G+   A +
Sbjct: 215 LNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD 274

Query: 350 RFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQL 409
           +     +++ Q L++++ + L+RRT +    +L   K + VV C ++ LQK  Y+  L+ 
Sbjct: 275 KDRAAGEQKLQELISIVNRCLIRRTSDILSKYL-PVKIEQVVCCNLTPLQKELYKLFLKQ 333

Query: 410 PEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIK 469
            +    +                         G  S      L  +  L+++ NH  LI 
Sbjct: 334 AKPVESLQT-----------------------GKISVS---SLSSITSLKKLCNHPALIY 367

Query: 470 PNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSW- 528
                  +      +L    +                      +  GKM  L+ ++    
Sbjct: 368 EKCLTGEEGFDGALDLFPQNYSTKAVE---------------PQLSGKMLVLDYILAMTR 412

Query: 529 ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VF 587
            +  DK++L S   + LD+ EK    + Y + RLDG+     R  +V+ FN+  S + +F
Sbjct: 413 TTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIF 472

Query: 588 LISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEE 647
           ++S++AGG GLNL+ ANR+V+FDP+WNPA D QA  R +R GQK+   ++RLLS G++EE
Sbjct: 473 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532

Query: 648 LVYTRQVYKQQLSNIAV-SGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLF-TSEI 705
            +  RQ +K+ LS+  V   +  +R+F          GEL     LF      L  T + 
Sbjct: 533 KILQRQAHKKALSSCVVDEEQDVERHFS--------LGELR---ELFSLNEKTLSDTHDR 581

Query: 706 IE-SHEEQGQQQERH 719
                   G+Q    
Sbjct: 582 FRCRRCVNGRQVRPP 596
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Length = 282 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query875
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3h1t_A590 Type I site-specific restriction-modification syst 99.98
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.97
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.97
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 99.97
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.97
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.97
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.97
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.97
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.97
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.96
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.96
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.96
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.95
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.95
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.95
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.94
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.94
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.94
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.93
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.92
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.92
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.92
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.91
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.9
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.89
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.89
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.88
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.88
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.86
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.82
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 99.79
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.78
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.77
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.77
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.76
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.76
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.76
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.76
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.75
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.74
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.74
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.73
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.73
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.73
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.73
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.72
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.72
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.72
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.71
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.7
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.69
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.69
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.69
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.68
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.49
3jux_A822 Protein translocase subunit SECA; protein transloc 99.65
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.65
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.65
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.63
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.63
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.61
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.58
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.58
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.57
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.57
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.56
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.54
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.53
3bor_A237 Human initiation factor 4A-II; translation initiat 99.51
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.48
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.45
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.45
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.43
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.26
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.24
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.17
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.64
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 98.61
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 97.99
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.53
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.37
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.16
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.13
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 96.99
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 96.87
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 96.42
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 95.86
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 95.79
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 95.16
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.14
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 94.86
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 94.43
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 94.36
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 93.86
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 93.61
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 93.22
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 92.79
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 92.55
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 91.09
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 90.96
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 90.5
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 90.27
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 90.01
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 89.91
3bos_A242 Putative DNA replication factor; P-loop containing 89.84
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 88.95
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 88.94
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 88.4
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 88.38
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 88.34
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 87.72
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 87.56
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 87.0
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 86.76
2chg_A226 Replication factor C small subunit; DNA-binding pr 86.63
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 86.62
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 86.52
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 85.76
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 85.09
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 84.85
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 84.53
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 84.0
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 84.0
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 83.95
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 83.65
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 83.57
1ojl_A304 Transcriptional regulatory protein ZRAR; response 83.35
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 81.45
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 81.45
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 81.35
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
Probab=100.00  E-value=1.3e-77  Score=720.62  Aligned_cols=490  Identities=32%  Similarity=0.551  Sum_probs=406.8

Q ss_pred             ccCCchhhhcccHHHHHHHHHHHHHh-----hCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCc
Q 044036          127 IQVPASINCRLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGY  201 (875)
Q Consensus       127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~-----~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~  201 (875)
                      +.+|+.+...|||||++||+||+..+     ..+.||||||+||+|||+|+|+++..++...+..         ....++
T Consensus        46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~---------~p~~~~  116 (644)
T 1z3i_X           46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC---------KPEIDK  116 (644)
T ss_dssp             EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS---------SCSCSC
T ss_pred             EeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc---------cCCCCc
Confidence            45778899999999999999999876     3567899999999999999999999887544221         123567


Q ss_pred             EEEEcCcchHHHHHHHHHHhcC--CcEEEEeCCChhHHHHHH---Hh-----CCceEEEeecccccccccccccccccEE
Q 044036          202 VLIICPSSVIQNWEIEFSRWST--FNVSIYHGPNRDMILEKL---EA-----CGVEVLITSFDSYRIHGSILSEVNWEIV  271 (875)
Q Consensus       202 ~LIV~P~sLl~qW~~E~~k~~~--~~v~v~~G~~r~~~~~~~---~~-----~~~~VvItTy~~l~~~~~~l~~~~w~~V  271 (875)
                      +|||||.+++.||.+||.+|++  ..++.++|..+......+   ..     ..++|+|+||++++.+...+....|++|
T Consensus       117 ~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~v  196 (644)
T 1z3i_X          117 VIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLV  196 (644)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEE
T ss_pred             EEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEE
Confidence            9999999999999999999987  556666665543322222   11     1468999999999998888888999999


Q ss_pred             EEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHH
Q 044036          272 IVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERF  351 (875)
Q Consensus       272 IiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~  351 (875)
                      |+||||++||..++.++++..+.+.+||+|||||+||++.|||+|++|++|+.+++...|...|..|+..+....++...
T Consensus       197 I~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~  276 (644)
T 1z3i_X          197 ICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKD  276 (644)
T ss_dssp             EETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHH
T ss_pred             EEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988877777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhH
Q 044036          352 IRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQV  431 (875)
Q Consensus       352 ~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~  431 (875)
                      ...+..+...|+.++.+|++||++.++.. .+|++.+.+++|+||+.|+.+|+.++........+.              
T Consensus       277 ~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~--------------  341 (644)
T 1z3i_X          277 RAAGEQKLQELISIVNRCLIRRTSDILSK-YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ--------------  341 (644)
T ss_dssp             HHHHHHHHHHHHHHHHHHEECCCGGGGGG-TSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhHhh-hCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh--------------
Confidence            77778888999999999999999986654 568999999999999999999999876432111000              


Q ss_pred             HHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCC
Q 044036          432 ECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD  511 (875)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (875)
                               .+   ......+..+..|+++|+||.++......           ....+....+....    ........
T Consensus       342 ---------~g---~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~  394 (644)
T 1z3i_X          342 ---------TG---KISVSSLSSITSLKKLCNHPALIYEKCLT-----------GEEGFDGALDLFPQ----NYSTKAVE  394 (644)
T ss_dssp             ---------TT---CCCHHHHHHHHHHHHHHHCTHHHHHHHHH-----------TCTTCTTGGGTSCS----SCCSSSCC
T ss_pred             ---------cC---ccchhHHHHHHHHHHHhCCHHHHHHHHhc-----------ccchhhhHHhhccc----cccccccC
Confidence                     00   11234678899999999999987421000           00000000000000    00001122


Q ss_pred             cccCchHHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCC-ceEEEE
Q 044036          512 VKSCGKMRALEKLMYSWAS-KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS-KQVFLI  589 (875)
Q Consensus       512 ~~~s~Kl~~L~~LL~~~~~-~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~-~~v~Li  589 (875)
                      +..|+|+..|..++..+.. .++|+||||+++.++++|+.+|...|+.+.+++|+++..+|++++++|++++. .++||+
T Consensus       395 ~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~  474 (644)
T 1z3i_X          395 PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML  474 (644)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred             cccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Confidence            4568999999999998864 68999999999999999999999999999999999999999999999999766 368999


Q ss_pred             ecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCc
Q 044036          590 STRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK  667 (875)
Q Consensus       590 St~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~  667 (875)
                      ||++||+||||++|++||+||++|||+.+.||+||+||+||+++|.||+|++.||+||+|+++|..|+.+++.+++++
T Consensus       475 st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~  552 (644)
T 1z3i_X          475 SSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE  552 (644)
T ss_dssp             EGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred             ecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999865
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 875
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 1e-42
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 3e-41
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 2e-26
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 6e-18
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 1e-13
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 8e-08
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 2e-07
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 2e-06
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 8e-04
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  155 bits (392), Expect = 1e-42
 Identities = 78/284 (27%), Positives = 145/284 (51%), Gaps = 26/284 (9%)

Query: 107 FDHTGPFEPLVLSKDGEYPIIQV--PASINCRLLEHQREGVKFLYKLY-----KNKHGGI 159
           ++        ++  D E   + V     ++  L  HQREGVKFL+        +N +G I
Sbjct: 24  YEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCI 83

Query: 160 LGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFS 219
           + D+MGLGKT+Q I  +  +  +       I K         V+++ PSS+++NW  E  
Sbjct: 84  MADEMGLGKTLQCITLIWTLLKQSPDCKPEIDK---------VIVVSPSSLVRNWYNEVG 134

Query: 220 RWS--TFNVSIYHGPNRDMILEKLEACGVE--------VLITSFDSYRIHGSILSEVNWE 269
           +W           G ++D I  KL     +        +LI S++++R+H  +L +    
Sbjct: 135 KWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVG 194

Query: 270 IVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTRE 329
           +VI DE HRLKN  ++ Y+A   +  + R+ ++GT +QN ++E ++L  +V  G LGT +
Sbjct: 195 LVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 254

Query: 330 HFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRR 373
            F++ ++ P+  G+   A ++     +++ Q L++++ + L+RR
Sbjct: 255 EFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR 298
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query875
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.87
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.84
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.82
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.82
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.81
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.8
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.79
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.77
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.77
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.74
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.71
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.69
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.69
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.63
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.6
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.52
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.45
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.4
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.39
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.35
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.34
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.31
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.25
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.19
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.15
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.14
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.12
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.11
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.1
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.09
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.0
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.99
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.97
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.95
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.91
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.87
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.84
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.47
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.36
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.64
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.55
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 97.23
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.6
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 94.94
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 93.84
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 93.39
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 91.8
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 89.28
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 88.77
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 88.24
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 87.9
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 87.78
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 87.57
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 86.75
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 86.67
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 86.66
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 86.47
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 85.92
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 85.9
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 84.24
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 83.49
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 82.49
d1em8a_147 DNA polymerase III chi subunit {Escherichia coli [ 80.72
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=7.3e-45  Score=393.77  Aligned_cols=238  Identities=31%  Similarity=0.584  Sum_probs=210.1

Q ss_pred             ccCCchhhhcccHHHHHHHHHHHHHhh-----CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCc
Q 044036          127 IQVPASINCRLLEHQREGVKFLYKLYK-----NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGY  201 (875)
Q Consensus       127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~~-----~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~  201 (875)
                      +.+|+.+...|+|||++||+||++++.     .+.|||||||||||||+|+|+++.+++.+....         ....++
T Consensus        46 ~~~~p~l~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~---------~~~~~~  116 (298)
T d1z3ix2          46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC---------KPEIDK  116 (298)
T ss_dssp             EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS---------SCSCSC
T ss_pred             eeEChhhhccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccc---------cCCCCc
Confidence            457888999999999999999998764     457899999999999999999999887654321         224568


Q ss_pred             EEEEcCcchHHHHHHHHHHhcC--CcEEEEeCCChhHHHHHHHh--------CCceEEEeecccccccccccccccccEE
Q 044036          202 VLIICPSSVIQNWEIEFSRWST--FNVSIYHGPNRDMILEKLEA--------CGVEVLITSFDSYRIHGSILSEVNWEIV  271 (875)
Q Consensus       202 ~LIV~P~sLl~qW~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~--------~~~~VvItTy~~l~~~~~~l~~~~w~~V  271 (875)
                      +|||||++++.||.+||.+|++  ..++.++|..+.........        ...+|+|+||+.+..+...+..++|++|
T Consensus       117 ~LIV~P~sl~~qW~~Ei~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~v  196 (298)
T d1z3ix2         117 VIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLV  196 (298)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEE
T ss_pred             EEEEccchhhHHHHHHHHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccceeee
Confidence            9999999999999999999987  56677787776554333221        2356999999999999999999999999


Q ss_pred             EEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHH
Q 044036          272 IVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERF  351 (875)
Q Consensus       272 IiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~  351 (875)
                      |+||||++||.+|+.++++..+++.+||+|||||++|++.|+|++++|++|+.|++...|.+.|..|+..+....+.+..
T Consensus       197 I~DEaH~ikn~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~~~  276 (298)
T d1z3ix2         197 ICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKD  276 (298)
T ss_dssp             EETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHH
T ss_pred             ecccccccccccchhhhhhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 044036          352 IRIADERKQHLVAVLRKYLLRR  373 (875)
Q Consensus       352 ~~~~~~~~~~L~~~L~~~~lRR  373 (875)
                      ...+.++..+|+.++++||+||
T Consensus       277 ~~~~~~~l~~L~~~l~~~~lRR  298 (298)
T d1z3ix2         277 RAAGEQKLQELISIVNRCLIRR  298 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHEECC
T ss_pred             HHHHHHHHHHHHHHhhhheeCC
Confidence            8888889999999999999997
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure