Citrus Sinensis ID: 044056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
NINKMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSSGN
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEcccccccHHHHHHHHHcccccccccccccHHHHHHHcccccEEEEccHHHHHHccccEEEEEcccccccccHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccHHHHHHHHHcccccEEEEEcccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHcccccccccEEEEEEccccccHHHHHHHHHHHccccccccccHHHHHHHHHcccEEEEEEcccHHHHHHHHccEEEEEcccccccccHHHHHHccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccEccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHcccHHccccc
Coil and Loop (DISEMBL)
ninkmegmarssdksITLVlfrgphfpashnyaKGYLQNYLSIKGLCFFLSMHSLyasygtseqmiasdsnvitranpmnLIIRFRvglegvdidalTNCAIKAARILgdvsgnaasCAELSIYLMLGLLRkhivptgetllgktVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSSGN
Flexible Loop (DISEMBL)
ninkmegmarssdkSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAkrswashsqvccqssgn
Low Complexity Region (SEG)
NINKMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSSGN
Disordered region (IsUnstruct)
***************ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCC*****
Disordered Region (DISOPRED)
*****************LVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH**********
Disordered Region (DISEMBL)
*************KSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK****************
Disordered Region (DISPRO)
***KMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQV*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NINKMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSSGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q60HD7	533	D-3-phosphoglycerate dehy	N/A	no	0.624	0.221	0.3	4e-06
O08651	533	D-3-phosphoglycerate dehy	yes	no	0.624	0.221	0.292	5e-06
O43175	533	D-3-phosphoglycerate dehy	yes	no	0.624	0.221	0.3	5e-06
A5A6P1	533	D-3-phosphoglycerate dehy	yes	no	0.624	0.221	0.3	5e-06
A5GFY8	533	D-3-phosphoglycerate dehy	yes	no	0.624	0.221	0.307	7e-06
Q61753	533	D-3-phosphoglycerate dehy	yes	no	0.624	0.221	0.292	1e-05
Q5EAD2	533	D-3-phosphoglycerate dehy	yes	no	0.613	0.217	0.288	2e-05
O29445	527	D-3-phosphoglycerate dehy	yes	no	0.518	0.185	0.319	4e-05
Q5R7M2	533	D-3-phosphoglycerate dehy	no	no	0.624	0.221	0.292	5e-05
Q58424	524	D-3-phosphoglycerate dehy	yes	no	0.502	0.181	0.301	0.0003

>sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)

Query: 50  LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I   +     +VI  A  + ++ R   G++ VD++A T    K 
Sbjct: 36  LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92

Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
             ++   +GN+ S AEL+  +++ L R+    T              G  L GKT+ I G
Sbjct: 93  VLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152

Query: 151 FGNIGVELAKRLRPFGVKII 170
            G IG E+A R++ FG+K I
Sbjct: 153 LGRIGREVATRMQSFGMKTI 172

Macaca fascicularis (taxid: 9541)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5

>sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 22/140 (15%)

Query: 50  LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I   +     +VI  A  + ++ R   G++ VD++A T    K 
Sbjct: 36  LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92

Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
             ++   +GN+ S AEL+  +++ L R+    T              G  L GKT+ I G
Sbjct: 93  VLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILG 152

Query: 151 FGNIGVELAKRLRPFGVKII 170
            G IG E+A R++ FG+K +
Sbjct: 153 LGRIGREVAARMQAFGMKTV 172

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)

Query: 50  LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I   +     +VI  A  + ++ R   G++ VD++A T    K 
Sbjct: 36  LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92

Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
             ++   +GN+ S AEL+  +++ L R+    T              G  L GKT+ I G
Sbjct: 93  ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152

Query: 151 FGNIGVELAKRLRPFGVKII 170
            G IG E+A R++ FG+K I
Sbjct: 153 LGRIGREVATRMQSFGMKTI 172

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)

Query: 50  LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I   +     +VI  A  + ++ R   G++ VD++A T    K 
Sbjct: 36  LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92

Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
             ++   +GN+ S AEL+  +++ L R+    T              G  L GKT+ I G
Sbjct: 93  ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152

Query: 151 FGNIGVELAKRLRPFGVKII 170
            G IG E+A R++ FG+K I
Sbjct: 153 LGRIGREVATRMQSFGMKTI 172

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|A5GFY8|SERA_PIG D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1

 Score = 50.4 bits (119), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 22/140 (15%)

Query: 50  LSMHSLYASYGTSEQMIASD-----SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I        S+VI  A  + ++ R   G++ VD++A T    K 
Sbjct: 36  LSKEELIAELQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATR---KG 92

Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
             ++   +GN+ S AEL+  ++L L R+    T              G  L GK + I G
Sbjct: 93  ILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKFMGTELNGKVLGILG 152

Query: 151 FGNIGVELAKRLRPFGVKII 170
            G IG E+A R++ FG+K I
Sbjct: 153 LGRIGREVATRMQSFGMKTI 172

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 22/140 (15%)

Query: 50  LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I   +     +VI  A  + ++ R   G++ VD++A T    K 
Sbjct: 36  LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92

Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
             ++   +GN+ S AEL+  +++ L R+    T              G  L GKT+ I G
Sbjct: 93  ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILG 152

Query: 151 FGNIGVELAKRLRPFGVKII 170
            G IG E+A R++ FG+K +
Sbjct: 153 LGRIGREVATRMQSFGMKTV 172

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 26/142 (18%)

Query: 50  LSMHSLYASYGTSEQMIASD-----SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I        S++I  A  + ++ R   G++ VD++A T    K 
Sbjct: 36  LSKEELIAELQDCEGLIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92

Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT----------------GETLLGKTVFI 148
             ++   +GN+ S AEL+  +++ L R+  +P                 G  L GK + I
Sbjct: 93  ILVMNTPNGNSLSAAELTCGMIMCLARQ--IPQAAASMKDGKWERKKFMGTELNGKVLGI 150

Query: 149 SGFGNIGVELAKRLRPFGVKII 170
            G G IG E+A R++ FG+K I
Sbjct: 151 LGLGRIGREVATRMQSFGMKTI 172

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 21/119 (17%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
           D+ VI  A  + +I R  VG++ +DI+A T   I      G   GN  S AE +I LML 
Sbjct: 54  DAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPG---GNTISTAEHAIALMLA 110

Query: 129 LLRKHIVPTGE----------------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
             RK  +P  +                 L GKT  + G G +G E+AKR +   + ++A
Sbjct: 111 AARK--IPQADRSVKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLA 167

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q5R7M2|SERA_PONAB D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 22/140 (15%)

Query: 50  LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I   +     +VI  A  + ++ R   G++ VD++A T    K 
Sbjct: 36  LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 92

Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
             ++   +GN+ S AEL+  +++ L R+    T              G  L GKT+ I G
Sbjct: 93  ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 152

Query: 151 FGNIGVELAKRLRPFGVKII 170
            G IG E+A R++  G+K I
Sbjct: 153 LGRIGREVAIRMQSLGMKTI 172

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=serA PE=3 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 21/116 (18%)

Query: 71  NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLL 130
           +VI +A  + +I R  VG++ +D++A T    K   ++     ++ S AEL++ LML   
Sbjct: 56  DVIEKAEKLKVIGRAGVGVDNIDVEAATE---KGIIVVNAPDASSISVAELTMGLMLAAA 112

Query: 131 RKHIVPT----------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
           R   +P                 G  L GKT+ + G G IG ++ KR + FG+ II
Sbjct: 113 RN--IPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNII 166

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
224136053	343	predicted protein [Populus trichocarpa]	0.957	0.527	0.564	1e-48
118488445	343	unknown [Populus trichocarpa]	0.957	0.527	0.564	1e-48
225460279	373	PREDICTED: d-3-phosphoglycerate dehydrog	0.920	0.466	0.553	4e-46
359493304	333	PREDICTED: d-3-phosphoglycerate dehydrog	0.915	0.519	0.556	5e-46
255561522	380	phosphoglycerate dehydrogenase, putative	0.957	0.476	0.538	7e-46
296089431	343	unnamed protein product [Vitis vinifera]	0.899	0.495	0.554	7e-45
363807464	391	uncharacterized protein LOC100785085 [Gl	0.941	0.455	0.530	8e-45
449503247	337	PREDICTED: d-3-phosphoglycerate dehydrog	0.931	0.522	0.515	6e-42
357455585	382	D-3-phosphoglycerate dehydrogenase [Medi	0.920	0.455	0.510	7e-42
388510518	344	unknown [Medicago truncatula]	0.920	0.505	0.510	8e-42

>gi|224136053|ref|XP_002327369.1| predicted protein [Populus trichocarpa] gi|222835739|gb|EEE74174.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 132/195 (67%), Gaps = 14/195 (7%)

Query: 8   MARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSM-HSLYASYGTS-EQM 65
           M  +SDK IT VLF GP+FPASH Y K YLQ Y  I+     L++   + ++Y     + 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 66  IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYL 125
           +   SN+I+RA  M LI++F VG+EGVDIDA T   IK ARI GD +GNAASCAE++IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 126 MLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           MLGLLRK               P GETL GKTVFI GFGNIG++LAKRLRPFGVKIIA K
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 174 RSWASHSQVCCQSSG 188
           RSWA HS+   QS+G
Sbjct: 181 RSWALHSEGSLQSNG 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488445|gb|ABK96037.1| unknown [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 132/195 (67%), Gaps = 14/195 (7%)

Query: 8   MARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSM-HSLYASYGTS-EQM 65
           M  +SDK IT VLF GP+FPASH Y K YLQ Y  I+     L++   + ++Y     + 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 66  IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYL 125
           +   SN+I+RA  M LI++F VG+EGVDIDA T   IK ARI GD +GNAASCAE++IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 126 MLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           MLGLLRK               P GETL GKTVFI GFGNIG++LAKRLRPFGVKIIA K
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 174 RSWASHSQVCCQSSG 188
           RSWA HS+   QS+G
Sbjct: 181 RSWALHSEGSLQSNG 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460279|ref|XP_002282092.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 1 [Vitis vinifera]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 129/188 (68%), Gaps = 14/188 (7%)

Query: 4   KMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIK-GLCFFLSMHSLYASYGTS 62
           K+E M + S+  IT +LF GP+FPAS+ Y + YLQNY  I+     F  +  + A Y   
Sbjct: 27  KIEKMVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMC 86

Query: 63  -EQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAEL 121
             + +  DSN+I+RAN M LI++F VGLEGVDI+A T C IK ARI    +GNAASCAE+
Sbjct: 87  IVKSMRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEM 146

Query: 122 SIYLMLGLLRKH----------IV--PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
           +IYLMLGLLRK           IV  P G+TL GKTVFI GFGNIG++LAKRLRPFGV+I
Sbjct: 147 AIYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRI 206

Query: 170 IAAKRSWA 177
           +A KRSWA
Sbjct: 207 LATKRSWA 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493304|ref|XP_003634565.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 2 [Vitis vinifera]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 128/187 (68%), Gaps = 14/187 (7%)

Query: 8   MARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIK-GLCFFLSMHSLYASYGTS-EQM 65
           M + S+  IT +LF GP+FPAS+ Y + YLQNY  I+     F  +  + A Y     + 
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 66  IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYL 125
           +  DSN+I+RAN M LI++F VGLEGVDI+A T C IK ARI    +GNAASCAE++IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 126 MLGLLRKH----------IV--PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           MLGLLRK           IV  P G+TL GKTVFI GFGNIG++LAKRLRPFGV+I+A K
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 174 RSWASHS 180
           RSWAS S
Sbjct: 181 RSWASQS 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561522|ref|XP_002521771.1| phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223538984|gb|EEF40581.1| phosphoglycerate dehydrogenase, putative [Ricinus communis]

 Score =  188 bits (478), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 129/195 (66%), Gaps = 14/195 (7%)

Query: 8   MARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLS-MHSLYASYGTS-EQM 65
           MA  +   IT VLF GPHFPASH Y K YLQ Y  I+     L+ + ++ A+Y     + 
Sbjct: 38  MAGDNSNYITRVLFCGPHFPASHIYTKQYLQKYPFIQVDDVPLNDVPNVIANYHICVSKT 97

Query: 66  IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYL 125
              DS++I+RA  M LI++F VGLEG++IDA + C IK ARI GD +GNAASCAE++IYL
Sbjct: 98  TRIDSSIISRATQMKLIMQFGVGLEGINIDAASRCGIKVARIPGDFTGNAASCAEMAIYL 157

Query: 126 MLGLLRKHIV------------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           MLGLLRK               P GETLLGKTVFI G+GNIG+ELAKRL+PFGVK+IA K
Sbjct: 158 MLGLLRKQNQMQVSIKQKKLGEPIGETLLGKTVFILGYGNIGIELAKRLQPFGVKVIATK 217

Query: 174 RSWASHSQVCCQSSG 188
           R W S+  V  Q  G
Sbjct: 218 RKWTSNLHVLHQQKG 232

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089431|emb|CBI39250.3| unnamed protein product [Vitis vinifera]

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 126/184 (68%), Gaps = 14/184 (7%)

Query: 8   MARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIK-GLCFFLSMHSLYASYGTS-EQM 65
           M + S+  IT +LF GP+FPAS+ Y + YLQNY  I+     F  +  + A Y     + 
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 66  IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYL 125
           +  DSN+I+RAN M LI++F VGLEGVDI+A T C IK ARI    +GNAASCAE++IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 126 MLGLLRKH----------IV--PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           MLGLLRK           IV  P G+TL GKTVFI GFGNIG++LAKRLRPFGV+I+A K
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 174 RSWA 177
           RSWA
Sbjct: 181 RSWA 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807464|ref|NP_001242647.1| uncharacterized protein LOC100785085 [Glycine max] gi|255645066|gb|ACU23032.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 126/196 (64%), Gaps = 18/196 (9%)

Query: 10  RSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIAS- 68
           + ++K IT VLF GP FPASH Y   YLQN+  IK     L +  +          I   
Sbjct: 56  KDAEKQITRVLFCGPRFPASHEYTIEYLQNHSHIK--VDVLPLEDVPKDIANYHVCIVKN 113

Query: 69  ---DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYL 125
              DS +I+RA  M LI+++ VGLEGVDIDA T   IK ARI GDVSGN+ASCAE++IYL
Sbjct: 114 MRLDSEIISRAVQMQLIMQYGVGLEGVDIDAATKHGIKVARIPGDVSGNSASCAEMAIYL 173

Query: 126 MLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           MLGLLRK               P  ETLLGKT+FI GFGNIG++LAKRL+PFGVK+IA K
Sbjct: 174 MLGLLRKQNELQVSIQQKKLGEPITETLLGKTIFILGFGNIGMDLAKRLQPFGVKVIAIK 233

Query: 174 RSWASHSQVCCQSSGN 189
           RSWAS++Q   + S N
Sbjct: 234 RSWASYAQHASKLSRN 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503247|ref|XP_004161907.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Cucumis sativus]

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 124/190 (65%), Gaps = 14/190 (7%)

Query: 5   MEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIK-GLCFFLSMHSLYASYGTSE 63
           ME     S K +  VLF G  FP+SHNY   YL NY  ++  +     +  + ++Y    
Sbjct: 1   MERTHEDSSKGLIRVLFCGSQFPSSHNYTCEYLLNYPFVQVDIVPCEDVPKVISNYHICV 60

Query: 64  -QMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELS 122
            +M+  D ++I+RA+ M LI++F VGL+GVD+DA T   IK ARI   V+GNA SCAE++
Sbjct: 61  VKMMKFDFDLISRASQMKLIVQFGVGLDGVDVDAATKRGIKVARIPSGVTGNALSCAEMA 120

Query: 123 IYLMLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
           IYLMLGLLRK              VPTG+TLLGKTVFI GFGNIG+ELAKRLRPFGV+II
Sbjct: 121 IYLMLGLLRKQKEMQIAVDHKMLGVPTGDTLLGKTVFIMGFGNIGLELAKRLRPFGVRII 180

Query: 171 AAKRSWASHS 180
           A KRSW  +S
Sbjct: 181 ATKRSWTENS 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455585|ref|XP_003598073.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula] gi|355487121|gb|AES68324.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula]

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 122/188 (64%), Gaps = 14/188 (7%)

Query: 8   MARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLS-MHSLYASYGTSE-QM 65
           M    ++  T VLF GP FP SH Y   YLQN+ SIK     L  +    A+Y     +M
Sbjct: 45  MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 104

Query: 66  IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYL 125
           +  DSN+I+RA  M LI+++ VGLEGVDIDA T   IK ARI    +GN+ +CAE++IYL
Sbjct: 105 MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 164

Query: 126 MLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           MLGLLRK               P G+TL GKT+FI GFGNIG++LA+RL+PFGVK+IA K
Sbjct: 165 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 224

Query: 174 RSWASHSQ 181
           RSWAS++Q
Sbjct: 225 RSWASYAQ 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510518|gb|AFK43325.1| unknown [Medicago truncatula]

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 122/188 (64%), Gaps = 14/188 (7%)

Query: 8   MARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLS-MHSLYASYGTSE-QM 65
           M    ++  T VLF GP FP SH Y   YLQN+ SIK     L  +    A+Y     +M
Sbjct: 7   MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 66

Query: 66  IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYL 125
           +  DSN+I+RA  M LI+++ VGLEGVDIDA T   IK ARI    +GN+ +CAE++IYL
Sbjct: 67  MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 126

Query: 126 MLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           MLGLLRK               P G+TL GKT+FI GFGNIG++LA+RL+PFGVK+IA K
Sbjct: 127 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 186

Query: 174 RSWASHSQ 181
           RSWAS++Q
Sbjct: 187 RSWASYAQ 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2207046	373	AT1G72190 [Arabidopsis thalian	0.915	0.463	0.497	1.1e-39
ZFIN|ZDB-GENE-030131-647	528	phgdh "phosphoglycerate dehydr	0.513	0.183	0.336	4e-05
UNIPROTKB|P0A544	528	serA "D-3-phosphoglycerate deh	0.529	0.189	0.299	9.8e-05
UNIPROTKB|G4MVW0	322	MGG_10814 "D-3-phosphoglycerat	0.449	0.263	0.352	0.0001
RGD|61987	533	Phgdh "phosphoglycerate dehydr	0.518	0.183	0.304	0.00024
UNIPROTKB|Q5SZU1	499	PHGDH "D-3-phosphoglycerate de	0.518	0.196	0.313	0.00028
UNIPROTKB|E1C7Y3	525	PHGDH "Uncharacterized protein	0.507	0.182	0.307	0.0003
UNIPROTKB|O43175	533	PHGDH "D-3-phosphoglycerate de	0.518	0.183	0.313	0.00031
UNIPROTKB|A5GFY8	533	PHGDH "D-3-phosphoglycerate de	0.518	0.183	0.321	0.00031
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.518	0.186	0.313	0.00041

TAIR|locus:2207046 AT1G72190 [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 93/187 (49%), Positives = 126/187 (67%)

Query:     4 KMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIK-GLCFFLSMHSLYASYGTS 62
             K+E +    D  +T VLF GPHFP S+N+ + YLQ Y  IK  +  +  +  +  +Y   
Sbjct:    39 KIERIVEKEDMHVTRVLFCGPHFPDSYNFTREYLQPYPFIKVDVVHYRDVPEVIKNYHIC 98

Query:    63 EQM-IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAEL 121
               M +  DSNVI+RA+ + LI+++ VGL+GVDIDA T   IK ARI  + +GNAASC+E+
Sbjct:    99 VAMTMQMDSNVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEM 158

Query:   122 SIYLMLGLLRKH----------IV--PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
             +IYLMLGLL+K           ++  PTG+TLLGKTVFI G+GNIG+ELAKRL+PFG ++
Sbjct:   159 AIYLMLGLLKKQNEMQISLRNRLLGEPTGDTLLGKTVFILGYGNIGIELAKRLKPFGSRV 218

Query:   170 IAAKRSW 176
             IA KR W
Sbjct:   219 IATKRFW 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-030131-647 phgdh "phosphoglycerate dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 39/116 (33%), Positives = 57/116 (49%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI   + + +I R   G++ VD+DA T   I    ++   SGN  S AEL+  L++ L
Sbjct:    61 ADVINAGSSLKIIGRAGTGVDNVDVDAATKRGII---VMNTPSGNTLSAAELTCALVMSL 117

Query:   130 LRKHIVPT---------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R HI                  G  L GK + I G G IG E+A R++ FG+K I
Sbjct:   118 SR-HIPQAVISMKDGKWDRKKFMGSELYGKVLGIVGLGRIGKEVATRMQSFGMKTI 172

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P0A544 serA "D-3-phosphoglycerate dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 117 (46.2 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 35/117 (29%), Positives = 58/117 (49%)

Query:    69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
             D+ V+  A  + ++ R  VGL+ VD+DA T    +   ++   + N  S AE ++ L+L 
Sbjct:    56 DAEVLAAAPKLKIVARAGVGLDNVDVDAAT---ARGVLVVNAPTSNIHSAAEHALALLLA 112

Query:   129 L----------LRKHIVP----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                        LR+H       +G  + GKTV + G G IG  +A+R+  FG  ++A
Sbjct:   113 ASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 169

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006564 "L-serine biosynthetic process" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0051289 "protein homotetramerization" evidence=IPI

UNIPROTKB|G4MVW0 MGG_10814 "D-3-phosphoglycerate dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 114 (45.2 bits), Expect = 0.00010, P = 0.00010
 Identities = 36/102 (35%), Positives = 53/102 (51%)

Query:    87 VGLEGVDIDALTN--CAIKAARILGDVSGNAASCAELSIYLMLGLLR-------KHI--- 134
             +G  GV ID +    C  +  RIL     NA + AE+ + L + + R       + +   
Sbjct:    77 IGKHGVGIDKIDKAACDARGIRILNTPGANAQAVAEIVVALAMAVARNIPSIYARQLSGP 136

Query:   135 VP----TGETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIA 171
             VP    TG+TL GKTV + G GNIG ++A+ L R F  +I+A
Sbjct:   137 VPKETCTGQTLFGKTVGVIGMGNIGRKVARMLQRGFDAQIVA 178

GO:0005575 "cellular_component" evidence=ND

RGD|61987 Phgdh "phosphoglycerate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
 Identities = 35/115 (30%), Positives = 59/115 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  +++ L
Sbjct:    61 ADVINAAEKLQVVGRAGTGVDNVDLEAATR---KGVLVMNTPNGNSLSAAELTCGMLMCL 117

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GKT+ I G G IG E+A R++ FG+K +
Sbjct:   118 ARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTV 172

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006541 "glutamine metabolic process" evidence=IEA;ISO

GO:0006544 "glycine metabolic process" evidence=IEA;ISO

GO:0006563 "L-serine metabolic process" evidence=ISO

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA;ISO

GO:0009070 "serine family amino acid biosynthetic process" evidence=TAS

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA;ISO

GO:0010468 "regulation of gene expression" evidence=IEA;ISO

GO:0019530 "taurine metabolic process" evidence=IEA;ISO

GO:0021510 "spinal cord development" evidence=IEA;ISO

GO:0021782 "glial cell development" evidence=IEA;ISO

GO:0021915 "neural tube development" evidence=IEA;ISO

GO:0022008 "neurogenesis" evidence=ISO

GO:0022402 "cell cycle process" evidence=IEA;ISO

GO:0031175 "neuron projection development" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|Q5SZU1 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 36/115 (31%), Positives = 59/115 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  +++ L
Sbjct:    27 ADVINAAEKLQVVGRAGTGVDNVDLEAATR---KGILVMNTPNGNSLSAAELTCGMIMCL 83

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GKT+ I G G IG E+A R++ FG+K I
Sbjct:    84 ARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 138

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|E1C7Y3 PHGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 0.00030, P = 0.00030
 Identities = 36/117 (30%), Positives = 60/117 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++V+  A  + ++ R   G++ VD+DA T    K   ++   +GN+ S AEL+  ++L L
Sbjct:    61 ADVLEAAGRLQVVGRAGTGVDNVDVDAATR---KGVLVMNTPTGNSLSAAELTCGMILCL 117

Query:   130 LRKHIVPT----------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+  +P                 G  L GKT+ + G G IG E+A R++ FG+K I
Sbjct:   118 ARQ--IPQAAASMKEGKWDRKKYMGMELNGKTLGVLGLGRIGREVATRMQAFGMKTI 172

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

UNIPROTKB|O43175 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
 Identities = 36/115 (31%), Positives = 59/115 (51%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             ++VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  +++ L
Sbjct:    61 ADVINAAEKLQVVGRAGTGVDNVDLEAATR---KGILVMNTPNGNSLSAAELTCGMIMCL 117

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GKT+ I G G IG E+A R++ FG+K I
Sbjct:   118 ARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 172

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0009055 "electron carrier activity" evidence=TAS

GO:0007420 "brain development" evidence=TAS

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006564 "L-serine biosynthetic process" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|A5GFY8 PHGDH "D-3-phosphoglycerate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
 Identities = 37/115 (32%), Positives = 58/115 (50%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             S+VI  A  + ++ R   G++ VD++A T    K   ++   +GN+ S AEL+  ++L L
Sbjct:    61 SDVINAAKKLQVVGRAGTGVDNVDLEAATR---KGILVMNTPNGNSLSAAELTCGMILCL 117

Query:   130 LRKHIVPT--------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
              R+    T              G  L GK + I G G IG E+A R++ FG+K I
Sbjct:   118 ARQIPQATASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTI 172

GO:0031175 "neuron projection development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 112 (44.5 bits), Expect = 0.00041, P = 0.00041
 Identities = 36/115 (31%), Positives = 55/115 (47%)

Query:    70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL 129
             + +I  A  + +I R  VG++ +D+ A +    K   ++    GN  + AE +  LM+ L
Sbjct:    55 ARIIEAAENLKIIGRAGVGVDNIDLAAASK---KGIIVVNSPEGNTIAAAEHTFALMMAL 111

Query:   130 LRK----HIVP----------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
             LR     H             TG  L GKTV I G G IG  +AKR++ F  ++I
Sbjct:   112 LRNIPQAHAALKEGKWLRKEFTGYELRGKTVGIIGLGRIGTAVAKRVKAFETRVI 166

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_410478	SubName- Full=Putative uncharacterized protein; (344 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.1441.1.1	annotation not avaliable (142 aa)			•						0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	1e-67
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	2e-31
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	1e-17
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-13
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	3e-13
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	2e-12
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	3e-12
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	8e-12
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	8e-12
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-11
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-11
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-11
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-11
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	2e-10
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	3e-10
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	5e-10
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	5e-10
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	1e-09
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	2e-09
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-09
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	4e-09
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	4e-09
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	4e-08
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	9e-08
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	1e-07
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	2e-07
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	5e-07
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	5e-07
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	6e-07
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	1e-06
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	2e-06
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	4e-06
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	5e-06
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	9e-06
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-05
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	1e-04
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-04
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	3e-04
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	3e-04
pfam00208	237	pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenyl	5e-04
COG0334	411	COG0334, GdhA, Glutamate dehydrogenase/leucine deh	8e-04
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	0.002
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	0.002
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	0.003
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	0.004

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  209 bits (535), Expect = 1e-67
 Identities = 94/196 (47%), Positives = 123/196 (62%), Gaps = 14/196 (7%)

Query: 4   KMEGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIK-GLCFFLSMHSLYASYGTS 62
           K++     SD   T VLF GP FPAS++Y + YLQ Y  I+        +  + A+Y   
Sbjct: 6   KIDKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDIC 65

Query: 63  -EQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAEL 121
             +M+  D+++I RA+ M LI++F VGLEGVD+DA T   IK ARI  + +GNAASCAE+
Sbjct: 66  VPKMMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEM 125

Query: 122 SIYLMLGLLRKHIV------------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
           +IYLMLGLLRK               P G+TL GKTVFI G+G IG+ELAKRLRPFGVK+
Sbjct: 126 AIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKL 185

Query: 170 IAAKRSWASHSQVCCQ 185
           +A +RSW S  +    
Sbjct: 186 LATRRSWTSEPEDGLL 201

Length = 347

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  115 bits (290), Expect = 2e-31
 Identities = 59/180 (32%), Positives = 83/180 (46%), Gaps = 24/180 (13%)

Query: 19  VLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGTSEQMIAS-----DSNVI 73
           VLF GP FP +    +  L     +  +     +    A    ++ ++       D+ ++
Sbjct: 2   VLFLGPEFPDAEELLRALLPPAPGV-EVVTAAELDEEAALLADADVLVPGMRKVIDAELL 60

Query: 74  TRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKH 133
             A  + LI +  VGL+GVD++A T   I  A I G   GNA S AE ++ LML LLR+ 
Sbjct: 61  AAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPG---GNAESVAEHAVMLMLALLRRL 117

Query: 134 IV------------PTGE---TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS 178
                         P G     L GKTV I G GNIG  +A+RLR FGV++I   R    
Sbjct: 118 PEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDP 177

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 17/116 (14%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
              V+  A  + +I R+ VG + +D++A     I      G    N+ S AEL+I LML 
Sbjct: 59  TEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPG---ANSNSVAELTIGLMLA 115

Query: 129 LLRKHIV-------------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           L R  I              P G  L GKT+ I G G IG  +A+RL  FG+K++A
Sbjct: 116 LAR-QIPQADREVRAGGWDRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLA 170

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 19/118 (16%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
              V+  A  +  I R   G++ +D++A T    +   ++    GNA S AEL + L+L 
Sbjct: 57  TEEVLAAAPNLKAIGRAGAGVDNIDLEAAT---KRGILVVNAPGGNAISVAELVLALLLA 113

Query: 129 LLRKHIVP---------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           L R  I                  G  L GKTV I G G IG  +AKRL+ FG+K+I 
Sbjct: 114 LAR-RIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG 170

Length = 324

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 66.3 bits (163), Expect = 3e-13
 Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 19/118 (16%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
            + VI  A  + +I R  VG++ +D++A T   I      G    N  S AE +I LML 
Sbjct: 53  TAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPG---ANTISVAEHTIALMLA 109

Query: 129 LLRKHIVP---------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           L R +I                  G  L GKT+ I G G IG E+A+R R FG+K++A
Sbjct: 110 LAR-NIPQADASLRAGKWDRKKFMGVELRGKTLGIVGLGRIGREVARRARAFGMKVLA 166

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 40/118 (33%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 72  VITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLR 131
           VI  A  + LI   R G E VD++A T   I      G    NA + AE ++ LML   R
Sbjct: 61  VIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGR---NAEAVAEFTVGLMLAETR 117

Query: 132 K------------------HIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                              +    G  L GKTV I GFG IG  +AKRL+ FG +++ 
Sbjct: 118 NIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLV 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 18/119 (15%)

Query: 72  VITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLR 131
           V+ +A  +  I     G++ +D+DA     I    + G    NA + AE ++ L+L LLR
Sbjct: 57  VLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPG---ANAEAVAEHALGLLLALLR 113

Query: 132 KHI---------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
           +                    G  L GKTV I G G IG  +AKRL+ FG+K++   R+
Sbjct: 114 RLPRADAAVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRT 172

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score = 62.2 bits (152), Expect = 8e-12
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 21/122 (17%)

Query: 72  VITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLR 131
           V+ +   + LI     G + VD++A     I    +    S  A   AE ++ L+L L R
Sbjct: 60  VLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNV-PGYSTEAV--AEHAVALILALAR 116

Query: 132 K------------------HIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK 173
           +                       G  L GKT+ I G G IG  +A+RL+ FG+K++   
Sbjct: 117 RIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYD 176

Query: 174 RS 175
           RS
Sbjct: 177 RS 178

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score = 61.8 bits (151), Expect = 8e-12
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 17/114 (14%)

Query: 72  VITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLR 131
           VI  A  + +I R  VGL+ +D++      IK   ++     ++ S AEL I LML L R
Sbjct: 57  VIDAAKNLKIIARAGVGLDNIDVEYAKKKGIK---VINTPGASSNSVAELVIGLMLSLAR 113

Query: 132 K-HI----VPTGE---------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
             H     +  G+          L GKT+ I GFG IG E+AK  R  G+ +IA
Sbjct: 114 FIHRANREMKLGKWNKKKYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIA 167

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 62.0 bits (152), Expect = 1e-11
 Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 27/122 (22%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDV----SGNAASCAELSIY 124
            + V+  A  + +I R  VG++ VD+ A T        I+  V    +GN  S AE +I 
Sbjct: 55  TAEVLEAAKNLKVIGRAGVGVDNVDVPAAT-----RRGII--VVNAPTGNTISAAEHTIA 107

Query: 125 LMLGLLRKHIVP---------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
           LML L R +I                  G  L GKT+ I G G IG E+AKR + FG+K+
Sbjct: 108 LMLALAR-NIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKV 166

Query: 170 IA 171
           IA
Sbjct: 167 IA 168

Length = 526

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 36/128 (28%)

Query: 72  VITRANPMNLIIRFRVGLEGVDIDALT------NCAIKAARILGDVSGNAASCAELSIYL 125
            +     + LI     G++ + ++ L       N             GN+ + AE ++ L
Sbjct: 54  ALAALKRLKLIQVPSAGVDHLPLERLPEGVVVANNH-----------GNSPAVAEHALAL 102

Query: 126 MLGLLRKHIVPTGE------------------TLLGKTVFISGFGNIGVELAKRLRPFGV 167
           +L L ++ IV                       L GKTV I G+G+IG E+A+ L+ FG+
Sbjct: 103 ILALAKR-IVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGM 161

Query: 168 KIIAAKRS 175
           ++I   RS
Sbjct: 162 RVIGVSRS 169

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 21/119 (17%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
              VI  A  + +I R  VG++ +DI+A T    +   ++   +GN  S AE ++ ++L 
Sbjct: 53  TEEVIAAAPKLKVIGRAGVGVDNIDIEAATA---RGILVVNAPTGNTISAAEHALAMLLA 109

Query: 129 LLRKHIVP----------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
             R   +P                 G  L GKT+ + G G IG  +AKR + FG+K++A
Sbjct: 110 AARN--IPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLA 166

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 22/109 (20%)

Query: 81  LIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--- 137
           LI R  +G + VD+ A T   +   R+ G V     + AE ++ L+L +LRK  +     
Sbjct: 72  LIARHGIGYDNVDLKAATEHGVIVTRVPGAV--ERDAVAEHAVALILTVLRK--INQASE 127

Query: 138 --------------GETLLGKTVFISGFGNIGVELAKRLRP-FGVKIIA 171
                         G  L GKTV I G+GNIG  +A+ L+  F  K++A
Sbjct: 128 AVKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLA 176

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 17/117 (14%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
           D   I +A  +  I R   GLE +D++       K   +     GN  +  E ++ ++L 
Sbjct: 53  DKEFIEKATNLKFIARAGAGLENIDLEY---AKEKGIELFNAPEGNRDAVGEHALGMLLA 109

Query: 129 LLRK-HIVPT-------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           L  K +                 G  L+GKTV I G+GN+G   AKRL  FG K+IA
Sbjct: 110 LFNKLNRADQEVRNGIWDREGNRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIA 166

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 32/129 (24%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGN--AASC---AELSI 123
           D  +I  A  + +I  +  G + +D+D         A+  G    N  A S    AEL+ 
Sbjct: 56  DKEIIDAAKNLKIIANYGAGFDNIDVDY--------AKEKGIPVTNTPAVSTEPTAELTF 107

Query: 124 YLMLGLLRKHIV---------------PT---GETLLGKTVFISGFGNIGVELAKRLRPF 165
            L+L L R+ I                P    G  L GKT+ I G G IG  +A+R + F
Sbjct: 108 GLILALARR-IAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAF 166

Query: 166 GVKIIAAKR 174
           G+KI+   R
Sbjct: 167 GMKILYYNR 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score = 56.8 bits (138), Expect = 5e-10
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 19/104 (18%)

Query: 88  GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK--------------- 132
           G + +D+DALT   I+ +   G V     + A+ +++L+LG LR                
Sbjct: 86  GYDQIDVDALTKRGIQVSNTPGAV---DEATADTALFLILGALRNFSRAERSARAGKWRG 142

Query: 133 HIVPT-GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
            +  T      GKT+ I G G IG  +A++   FG+KII   RS
Sbjct: 143 FLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRS 186

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 56.8 bits (138), Expect = 5e-10
 Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 31/133 (23%)

Query: 65  MIASDS---NVITRANPMNLI-IRFRVGLEGVDIDALTNCAIKAARILGDVSGNAA---- 116
           MIA+      VI     + +I + F  G++ VD++A     I        VS NAA    
Sbjct: 53  MIANMPLPGEVIEACKNLKMISVAF-TGVDHVDLEACKERGIT-------VS-NAAGYST 103

Query: 117 -SCAELSIYLMLGLLRK-----HIVPTGET--------LLGKTVFISGFGNIGVELAKRL 162
            + AEL+I L + LLR        V  G T        L GKTV I G G IG+ +A+  
Sbjct: 104 EAVAELTIGLAIDLLRNIVPCDAAVRAGGTKAGLIGRELAGKTVGIVGTGAIGLRVARLF 163

Query: 163 RPFGVKIIAAKRS 175
           + FG K++A  RS
Sbjct: 164 KAFGCKVLAYSRS 176

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 115 AASCAELSIYLMLGLLRKH-------------IVPTGETLLGKTVFISGFGNIGVELAKR 161
           A + AE ++ L+L  LR+                     L G TV I G G IG  L   
Sbjct: 84  AETVAEHALALLLAGLRQLPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPL 143

Query: 162 LRPFGVKIIAAKRS 175
           L PFG K+IA  RS
Sbjct: 144 LAPFGAKVIAVNRS 157

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 20/105 (19%)

Query: 81  LIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIV----- 135
           LI  F VG +G+D+DA     I+       V       A+L++ L+L +LR+ I      
Sbjct: 67  LIASFGVGYDGIDLDAARARGIRVTNT-PGV--LTDDVADLAVGLLLAVLRR-IPAADRF 122

Query: 136 -----------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
                      P    + GK V I G G IG  +A+RL  FG++I
Sbjct: 123 VRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEI 167

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 54.8 bits (133), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 13/74 (17%)

Query: 115 AASCAELSIYLMLGLLRKHIV-------------PTGETLLGKTVFISGFGNIGVELAKR 161
               AE  +  ML   RK                     L GKTV I G G+IG E+A+R
Sbjct: 93  GPPIAEYVLGYMLAFARKLPRYARNQAERRWQRRGPVRELAGKTVLIVGLGDIGREIARR 152

Query: 162 LRPFGVKIIAAKRS 175
            + FG+++I  +RS
Sbjct: 153 AKAFGMRVIGVRRS 166

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 14/67 (20%)

Query: 123 IYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVK 168
           + L+L L R+                   G  L GKTV I G G IG  +A+RL+ FG+K
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60

Query: 169 IIAAKRS 175
           +IA  R 
Sbjct: 61  VIAYDRY 67

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score = 54.3 bits (132), Expect = 4e-09
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 30/129 (23%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILG---DVSGNAASCAELSIYL 125
           D+ ++  A P+ +I  + VG + +D+DA     I     +    DV  +A   A+L+  L
Sbjct: 56  DAELLDAAPPLKVIANYSVGYDHIDVDAAKARGI----PVTNTPDVLTDA--TADLAFAL 109

Query: 126 MLGLLRKHIVPTGETLL-------------------GKTVFISGFGNIGVELAKRLRPFG 166
           +L   R+  V  G+  +                   GKT+ I G G IG  +A+R + FG
Sbjct: 110 LLAAARR--VVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFG 167

Query: 167 VKIIAAKRS 175
           +KI+   RS
Sbjct: 168 MKILYHNRS 176

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 28/115 (24%)

Query: 81  LIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--- 137
            I R   G+  +D+DA +   I      G    NA + AEL I +ML L R +I+     
Sbjct: 53  AIARAGAGVNNIDVDAASKRGIVVFNTPG---ANANAVAELVIAMMLALSR-NIIQAIKW 108

Query: 138 ---------------------GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                                G  L GKT+ + G GNIG  +A      G+K+I 
Sbjct: 109 VTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANAALALGMKVIG 163

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 16/75 (21%)

Query: 115 AASCAELSIYLMLGLLR--------------KHIVPTGETLLGKTVFISGFGNIGVELAK 160
            AS AEL++ L+L  LR              +       +L  + V I G+G+IG  + +
Sbjct: 92  DASTAELAVALILASLRGLPRFVRAQARGRWEP--RRTPSLADRRVLIVGYGSIGRAIER 149

Query: 161 RLRPFGVKIIAAKRS 175
           RL PF V++    R+
Sbjct: 150 RLAPFEVRVTRVART 164

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 18/69 (26%)

Query: 119 AELSIYLMLGLLRKHIVPT-----------------GETLLGKTVFISGFGNIGVELAKR 161
           AEL+I L++GL R HI+                   G  L GKTV I G G +G  +A+R
Sbjct: 104 AELTIGLLIGLGR-HILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARR 162

Query: 162 LRPFGVKII 170
           L  FG  ++
Sbjct: 163 LSGFGATLL 171

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 71  NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSG-NAASCAELSIYLMLGL 129
             I +A  + L +   +G + VD+ A    A      + +V+G N  S AE  + ++L L
Sbjct: 77  ERIAKAKNLKLALTAGIGSDHVDLQA----ANDRGITVAEVTGSNVVSVAEHVVMMILIL 132

Query: 130 LRKHI-----VPTGE-----------TLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
           +R ++        G             L GKTV   G G IG+ + +RL+PF V +
Sbjct: 133 VRNYVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHL 188

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 26/119 (21%)

Query: 72  VITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILG----DVSGNAASCAELSIYLML 127
           VI     + +I+R+ VG++ VD+ A T   I    +      +V+ +A +       L+L
Sbjct: 59  VIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALA-------LIL 111

Query: 128 GLLRK-----HIVPTGET----------LLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
            L RK       V  G            L G T+ + GFG IG  +AKR + FG ++IA
Sbjct: 112 ALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIA 170

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 29/131 (22%)

Query: 56  YASYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSG-N 114
           + +Y T+E+        I +A  + L I   +G + VD+ A    A +    + +V+G N
Sbjct: 100 WPAYLTAER--------IAKAPNLKLAITAGIGSDHVDLQA----ASEHGITVAEVTGSN 147

Query: 115 AASCAELSIYLMLGLLRKHI-----VPTGE-----------TLLGKTVFISGFGNIGVEL 158
           + S AE  + ++L L+R +         G             L G TV I G G IG+ +
Sbjct: 148 SISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAV 207

Query: 159 AKRLRPFGVKI 169
            +RL+PF VK+
Sbjct: 208 LRRLKPFDVKL 218

Length = 385

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 19/119 (15%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
            + V+  A  + +I R  VG++ +D+DA T   I    + G    +  S AEL++ L+L 
Sbjct: 51  TAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPG---YSTESVAELTVGLILA 107

Query: 129 LLRKHIV---------------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA 172
           L R  I                P G  L GKT+ + G G IG   A   +  G+ ++A 
Sbjct: 108 LAR-RIPEADASVRAGDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVAY 165

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 24/128 (18%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
           D  V   A  + ++  + VG + +D++  T   I        V   A   A+ +  L+L 
Sbjct: 58  DCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNT-PGVLTEAT--ADFAWALLLA 114

Query: 129 LLRK-----HIVPTGE----------------TLLGKTVFISGFGNIGVELAKRLRPFGV 167
             R+     H V +GE                 + GKT+ I GFG IG  +A+R + FG+
Sbjct: 115 TARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGM 174

Query: 168 KIIAAKRS 175
           +I+   R+
Sbjct: 175 RILYYSRT 182

Length = 333

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 22/101 (21%)

Query: 92  VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVP-------------TG 138
           +D+ A     I    + G   G  A+ AEL+  L+L L R ++                G
Sbjct: 83  IDLAAAKERGI---VVCGTGGGPTAT-AELTWALILALAR-NLPEEDAALRAGGWQTTLG 137

Query: 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH 179
             L GKT+ I G G IG  +A+  + FG+++IA    W+S+
Sbjct: 138 TGLAGKTLGIVGLGRIGARVARIGQAFGMRVIA----WSSN 174

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
           +   L GKT+   G G+IG E+AKRL+ FG+K+I
Sbjct: 129 SLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVI 162

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 16/77 (20%)

Query: 112 SGNAASCAELSIYLMLGLLRK-------------HIVPT---GETLLGKTVFISGFGNIG 155
             NA   AE ++  +L  LR+                PT   G  L G+TV I GFG IG
Sbjct: 103 DANAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIG 162

Query: 156 VELAKRLRPFGVKIIAA 172
             + + LRPFG++++  
Sbjct: 163 RAVVELLRPFGLRVLVY 179

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 21/119 (17%)

Query: 73  ITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSG-NAASCAELSIYLMLGLLR 131
           I +A  + L++   +G + +D+ A    A  A   + +V+G N  S AE  +  +L LLR
Sbjct: 116 IKKAKNLELLLTAGIGSDHIDLPA----AAAAGLTVAEVTGSNVVSVAEDELMRILILLR 171

Query: 132 K-----HIVPTGE-----------TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR 174
                 H V +GE            L GKTV   G G IG  L +RL+PF   ++   R
Sbjct: 172 NFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR 230

Length = 386

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 25/99 (25%)

Query: 102 IKAARILG----DVSGNA-ASCAELSIYLMLGLLRKH-----IVPTGE------------ 139
           + AA+  G    +V G +  S A+ +  L+L L R       +V  GE            
Sbjct: 81  LAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPDFCFWDY 140

Query: 140 ---TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
               L GKT+ I G+GNIG  +A+  R FG+K++ A+R 
Sbjct: 141 PIIELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERK 179

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 114 NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
           NA S AE   Y++  LL       G +L GKTV I G GN+G  LA+RL   G+ ++
Sbjct: 90  NANSVAE---YVLSALLVLAQ-RQGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVL 142

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 18/88 (20%)

Query: 102 IKAARILGDVSGNAA----SCAELSIYLMLGLLR--KHIVPTGET-------LLGK---- 144
           + AA+ LG    N      S A+ ++ LML  LR  K I+   E        L G+    
Sbjct: 84  LDAAKELGIKVSNVTYSPNSVADYTVMLMLMALRKYKQIMKRAEVNDYSLGGLQGRELRN 143

Query: 145 -TVFISGFGNIGVELAKRLRPFGVKIIA 171
            TV + G G IG  + K L  FG KI+A
Sbjct: 144 LTVGVIGTGRIGQAVIKNLSGFGCKILA 171

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
           P G +L G T+ I GFG IG  LA+R    G++++A +RS
Sbjct: 129 PLG-SLAGSTLGIVGFGAIGQALARRALALGMRVLALRRS 167

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 92  VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVP--------------- 136
           VD+ A     I   R+    S  A   AE ++ L+L L RK I                 
Sbjct: 82  VDLKAAKELGITVVRV-PAYSPYAV--AEHAVALLLALNRK-IHRAYNRVREGNFSLDGL 137

Query: 137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
            G  L GKTV + G G IG   A+ L+ FG +++A
Sbjct: 138 LGFDLHGKTVGVIGTGKIGQAFARILKGFGCRVLA 172

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 123 IYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           +Y +   L+K     G++L GKTV + GFGN+G   A++L   G K++A
Sbjct: 15  VYFVEEALKKLG---GDSLEGKTVAVQGFGNVGSYAAEKLLELGAKVVA 60

Length = 237

>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA 172
           G+ L G  V + GFGN+G   A++L   G K++A 
Sbjct: 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAV 236

Length = 411

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 95  DALTNCAIKAARILGDV----SGNAASCAELSIYLMLGLLRKHI---VPTGETLLGKTVF 147
           +AL    + A  + G      + N+    ELS+  +   L       +     + GKTV 
Sbjct: 105 EALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPDVAGKTVV 164

Query: 148 ISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQV 182
           + G G +G E A+ LR  G +++    +  +  Q+
Sbjct: 165 VVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQL 199

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 17/99 (17%)

Query: 87  VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK-------------- 132
            G + +D+D      I    +  + S NA   AE +I L+L LLR               
Sbjct: 76  TGYDNIDLDYAKELGIGVTNV-PEYSPNAV--AEHTIALILALLRNRKYIDERDKNQDLQ 132

Query: 133 HIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                G  L  +TV + G G IG  +A+R + FG+K+IA
Sbjct: 133 DAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIA 171

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
           TLLG  V I GFG+IG  LA  L   G ++    RS
Sbjct: 140 TLLGARVLIWGFGSIGQRLAPLLTALGARVTGVARS 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 16/71 (22%)

Query: 116 ASCAELSIYLMLGLLRKHIVP---------------TGETLLGKTVFISGFGNIGVELAK 160
           A+ AE +  L+L L R  +                  G  L GKT+ + G G IG  +A+
Sbjct: 98  ATVAEHAFALLLALSR-KLREAIERTRRGDFSQAGLRGFELAGKTLGVVGTGRIGRRVAR 156

Query: 161 RLRPFGVKIIA 171
             R FG+K++A
Sbjct: 157 IARGFGMKVLA 167

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PLN02928	347	oxidoreductase family protein	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.98
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.98
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.97
PLN03139	386	formate dehydrogenase; Provisional	99.97
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.97
PRK07574	385	formate dehydrogenase; Provisional	99.97
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	99.97
PLN02306	386	hydroxypyruvate reductase	99.97
PRK08605	332	D-lactate dehydrogenase; Validated	99.97
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.95
PRK06436	303	glycerate dehydrogenase; Provisional	99.95
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	99.94
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.78
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.63
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.55
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.55
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.34
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.33
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.59
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.42
PLN02494	477	adenosylhomocysteinase	98.28
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.24
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.11
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.94
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.89
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.89
PLN02712	667	arogenate dehydrogenase	97.64
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.46
PLN02256	304	arogenate dehydrogenase	97.38
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.37
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.3
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.2
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.19
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.14
PRK09414	445	glutamate dehydrogenase; Provisional	97.13
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.05
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.05
PLN02712	667	arogenate dehydrogenase	97.0
PRK14031	444	glutamate dehydrogenase; Provisional	96.92
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.88
PRK05225	487	ketol-acid reductoisomerase; Validated	96.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.84
PLN02477	410	glutamate dehydrogenase	96.81
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.8
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.8
PRK14030	445	glutamate dehydrogenase; Provisional	96.8
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.73
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.7
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	96.64
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	96.51
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.45
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.44
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.42
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.35
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.34
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.32
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.32
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.29
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.21
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.19
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.17
PLN02858	1378	fructose-bisphosphate aldolase	96.16
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.11
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.02
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.99
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.71
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.71
PLN00203	519	glutamyl-tRNA reductase	95.68
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.6
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.58
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.53
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.43
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.39
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.38
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.37
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.36
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.35
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.33
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.29
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.1
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.06
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.0
PRK14982	340	acyl-ACP reductase; Provisional	95.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.94
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	94.91
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.85
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.84
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.74
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	94.72
PRK08328	231	hypothetical protein; Provisional	94.66
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.59
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.55
PRK04148	134	hypothetical protein; Provisional	94.54
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.53
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.51
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.37
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.28
PRK06841	255	short chain dehydrogenase; Provisional	94.28
PRK09496	453	trkA potassium transporter peripheral membrane com	94.28
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.27
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	94.25
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.2
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.12
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.09
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.06
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.05
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	93.97
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	93.93
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.79
PRK06153	393	hypothetical protein; Provisional	93.72
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.67
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	93.66
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	93.63
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.58
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.54
PLN02740	381	Alcohol dehydrogenase-like	93.34
PRK07831	262	short chain dehydrogenase; Provisional	93.29
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.28
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.25
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.22
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.22
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.18
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	93.14
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.1
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.07
COG0281	432	SfcA Malic enzyme [Energy production and conversio	93.03
PRK08223	287	hypothetical protein; Validated	92.92
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	92.91
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	92.89
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	92.87
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	92.8
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.77
PRK06141	314	ornithine cyclodeaminase; Validated	92.68
PRK05866	293	short chain dehydrogenase; Provisional	92.67
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.65
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.56
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	92.55
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.47
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	92.43
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.4
PRK07411	390	hypothetical protein; Validated	92.36
PRK12862	763	malic enzyme; Reviewed	92.34
PRK12367	245	short chain dehydrogenase; Provisional	92.34
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	92.3
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	92.28
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	92.14
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.12
PRK12861	764	malic enzyme; Reviewed	92.08
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	92.08
PRK03562	621	glutathione-regulated potassium-efflux system prot	92.05
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	92.03
PRK10669	558	putative cation:proton antiport protein; Provision	92.01
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.0
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.94
PRK06196	315	oxidoreductase; Provisional	91.94
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.91
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	91.87
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	91.86
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	91.84
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	91.76
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	91.72
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	91.72
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	91.66
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	91.6
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	91.56
PRK06197	306	short chain dehydrogenase; Provisional	91.5
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	91.47
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	91.47
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	91.46
PRK05562	223	precorrin-2 dehydrogenase; Provisional	91.46
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	91.36
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.28
PLN02780	320	ketoreductase/ oxidoreductase	91.18
PRK08324	681	short chain dehydrogenase; Validated	91.14
PLN02253	280	xanthoxin dehydrogenase	91.14
PRK03659	601	glutathione-regulated potassium-efflux system prot	91.1
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	91.09
PRK13529	563	malate dehydrogenase; Provisional	91.08
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	91.03
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.98
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.96
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	90.94
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.92
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.85
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	90.85
PRK06701	290	short chain dehydrogenase; Provisional	90.82
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	90.81
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	90.8
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	90.78
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.76
PLN03209	576	translocon at the inner envelope of chloroplast su	90.54
PLN02695	370	GDP-D-mannose-3',5'-epimerase	90.51
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.5
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	90.49
PRK06720	169	hypothetical protein; Provisional	90.45
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	90.4
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	90.34
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.34
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.28
PRK07985	294	oxidoreductase; Provisional	90.27
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	90.25
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	90.22
PRK05854	313	short chain dehydrogenase; Provisional	90.2
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	90.13
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.08
PLN02827	378	Alcohol dehydrogenase-like	90.06
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	90.04
PRK14851	679	hypothetical protein; Provisional	89.97
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	89.8
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.72
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	89.57
PLN02602	350	lactate dehydrogenase	89.49
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	89.37
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	89.34
PRK07340	304	ornithine cyclodeaminase; Validated	89.34
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	89.29
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	89.23
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	89.23
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	89.17
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	89.07
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	89.03
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	88.96
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	88.89
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	88.79
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	88.74
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	88.73
PRK12814	652	putative NADPH-dependent glutamate synthase small	88.67
PRK06128	300	oxidoreductase; Provisional	88.64
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.58
PLN02427	386	UDP-apiose/xylose synthase	88.52
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	88.52
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	88.36
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	88.25
PRK08618	325	ornithine cyclodeaminase; Validated	88.2
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	88.07
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	88.06
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	87.92
PLN02572	442	UDP-sulfoquinovose synthase	87.91
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	87.86
PRK14804	311	ornithine carbamoyltransferase; Provisional	87.84
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	87.76
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	87.63
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	87.54
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	87.49
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	87.4
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	87.37
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	87.35
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	87.34
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	87.31
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	87.29
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	87.28
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	87.24
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	87.19
PRK13512	438	coenzyme A disulfide reductase; Provisional	87.15
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	87.13
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	87.11
PRK01713	334	ornithine carbamoyltransferase; Provisional	87.11
PRK14852	989	hypothetical protein; Provisional	87.07
PRK06116	450	glutathione reductase; Validated	87.04
PRK06484	520	short chain dehydrogenase; Validated	87.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	86.95
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	86.92
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	86.92
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	86.88
PTZ00058	561	glutathione reductase; Provisional	86.87
PRK13984	604	putative oxidoreductase; Provisional	86.86
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	86.85
PTZ00317	559	NADP-dependent malic enzyme; Provisional	86.82
PLN02852	491	ferredoxin-NADP+ reductase	86.8
PRK12831	464	putative oxidoreductase; Provisional	86.74
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.73
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	86.72
PRK12831	464	putative oxidoreductase; Provisional	86.68
PTZ00188	506	adrenodoxin reductase; Provisional	86.67
PRK06370	463	mercuric reductase; Validated	86.66
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	86.62
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	86.59
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	86.54
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	86.49
PRK07846	451	mycothione reductase; Reviewed	86.48
PRK12770	352	putative glutamate synthase subunit beta; Provisio	86.47
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	86.43
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	86.41
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	86.4
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	86.35
PLN02206	442	UDP-glucuronate decarboxylase	86.32
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	86.3
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	86.2
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	86.2
PRK07877	722	hypothetical protein; Provisional	86.16
PTZ00245	287	ubiquitin activating enzyme; Provisional	86.12
PRK10083	339	putative oxidoreductase; Provisional	86.01
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	86.0
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	85.99
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	85.93
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	85.93
PRK04284	332	ornithine carbamoyltransferase; Provisional	85.9
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	85.87
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	85.85
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	85.78
COG5322	351	Predicted dehydrogenase [General function predicti	85.78
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	85.66
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	85.56
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	85.43
PRK13771	334	putative alcohol dehydrogenase; Provisional	85.37
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	85.35
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	85.32
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	85.32
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	85.32
PRK06046	326	alanine dehydrogenase; Validated	85.31
PLN00106	323	malate dehydrogenase	85.31
PRK06567	1028	putative bifunctional glutamate synthase subunit b	85.25
PLN03129	581	NADP-dependent malic enzyme; Provisional	85.24
PRK07845	466	flavoprotein disulfide reductase; Reviewed	85.23
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	85.22
PLN00016	378	RNA-binding protein; Provisional	85.2
PRK07201	657	short chain dehydrogenase; Provisional	85.08
cd08252	336	AL_MDR Arginate lyase and other MDR family members	85.08
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	85.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	84.97
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	84.93
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	84.92
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	84.9
PRK02102	331	ornithine carbamoyltransferase; Validated	84.84
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	84.79
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	84.78
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	84.73
PLN02507	499	glutathione reductase	84.62
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	84.61
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	84.59
PRK08291	330	ectoine utilization protein EutC; Validated	84.56
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	84.55
PLN02353	473	probable UDP-glucose 6-dehydrogenase	84.39
PRK10262	321	thioredoxin reductase; Provisional	84.21
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	84.15
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	84.03
PRK14727	479	putative mercuric reductase; Provisional	83.93
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	83.92
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	83.84
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	83.82
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	83.74
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	83.69
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	83.68
PLN02546	558	glutathione reductase	83.67
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	83.54
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	83.44
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	83.44
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	83.42
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	83.42
PRK13748	561	putative mercuric reductase; Provisional	83.41
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	83.36
PRK05855	582	short chain dehydrogenase; Validated	83.31
TIGR02053	463	MerA mercuric reductase. This model represents the	83.26
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	83.23
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	83.22
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	83.2
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	83.16
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	83.14
PRK14694	468	putative mercuric reductase; Provisional	83.09
PRK12779	944	putative bifunctional glutamate synthase subunit b	83.08
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	83.05
TIGR01285	432	nifN nitrogenase molybdenum-iron cofactor biosynth	83.04
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	83.0
KOG2250	514	consensus Glutamate/leucine/phenylalanine/valine d	82.74
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	82.71
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	82.58
PTZ00354	334	alcohol dehydrogenase; Provisional	82.57
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	82.36
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	82.33
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	82.29
PTZ00153	659	lipoamide dehydrogenase; Provisional	82.26
PRK00779	304	ornithine carbamoyltransferase; Provisional	82.2
PLN02702	364	L-idonate 5-dehydrogenase	82.19
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	82.13
PRK08132	547	FAD-dependent oxidoreductase; Provisional	82.08
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	81.96
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	81.94
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	81.83
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	81.78
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	81.74
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	81.7
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	81.7
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	81.62
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	81.6
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	81.52
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	81.44
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	81.36
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	81.26
PRK08105	149	flavodoxin; Provisional	81.23
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	81.18
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	81.17
PLN02985	514	squalene monooxygenase	81.13
PRK09564	444	coenzyme A disulfide reductase; Reviewed	80.68
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	80.57
PTZ00052	499	thioredoxin reductase; Provisional	80.54
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	80.48
cd00316	399	Oxidoreductase_nitrogenase The nitrogenase enzyme	80.4
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	80.23
PRK10537	393	voltage-gated potassium channel; Provisional	80.23
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	80.15
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	80.12

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=4.9e-36  Score=255.03  Aligned_cols=173  Identities=54%  Similarity=0.864  Sum_probs=145.4

Q ss_pred             ccccCCCCCCcceEEEeCCCCCCchhHHHHHhhcccCceeeeCch-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEE
Q 044056            6 EGMARSSDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFL-SMHSLYASYGT-SEQMIASDSNVITRANPMNLII   83 (189)
Q Consensus         6 ~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~   83 (189)
                      ++--+++++.+||||++.+..+....+.++.++.++.+.+...+. ++.+.++++|+ +.+..++++++++.+|+||||+
T Consensus         8 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~   87 (347)
T PLN02928          8 DKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIM   87 (347)
T ss_pred             hhhccCCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEE
Confidence            333466778889999998876654455667776665444443444 77888999999 6666789999999999999999


Q ss_pred             EcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------CCCCCCCCCCEEEEEcC
Q 044056           84 RFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------VPTGETLLGKTVFISGF  151 (189)
Q Consensus        84 ~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~~~~~~l~gktvGIvG~  151 (189)
                      +.++|+|++|++++.++||.|+|+|+++++++++||||+++++|+++|++.            ...+.+|.||||||||+
T Consensus        88 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~  167 (347)
T PLN02928         88 QFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGY  167 (347)
T ss_pred             ECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECC
Confidence            999999999999999999999999997544889999999999999999987            12356899999999999


Q ss_pred             CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          152 GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       152 G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |+||+++|++|++|||+|++|||+.++
T Consensus       168 G~IG~~vA~~l~afG~~V~~~dr~~~~  194 (347)
T PLN02928        168 GAIGIELAKRLRPFGVKLLATRRSWTS  194 (347)
T ss_pred             CHHHHHHHHHHhhCCCEEEEECCCCCh
Confidence            999999999999999999999998543

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-35  Score=247.23  Aligned_cols=157  Identities=18%  Similarity=0.195  Sum_probs=128.6

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeC-ch-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF-FL-SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVD   93 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id   93 (189)
                      |||+++++..-. . ...+.++...++..... +. ++.+.++++|+ +.+..++++++++++|+||||++.|+|+|+||
T Consensus         1 mki~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   78 (311)
T PRK08410          1 MKIVILDAKTLG-D-KDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVD   78 (311)
T ss_pred             CeEEEEecCCCC-h-hhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEccccccccc
Confidence            468877764211 1 12244544434433332 23 67788999999 66667899999999999999999999999999


Q ss_pred             hhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------CC----------CCCCCCCCEEEEEcCCH
Q 044056           94 IDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------VP----------TGETLLGKTVFISGFGN  153 (189)
Q Consensus        94 ~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~~----------~~~~l~gktvGIvG~G~  153 (189)
                      +++++++||.|+|+||+   ++++||||+++++|++.|+++          ..          .+.+|+||||||||+|+
T Consensus        79 ~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~  155 (311)
T PRK08410         79 IEYAKKKGIAVKNVAGY---STESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT  155 (311)
T ss_pred             HHHHHhCCCEEEcCCCC---CChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence            99999999999999999   899999999999999999997          11          13689999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          154 IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       154 IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ||+++|+++++|||+|++|||+.+.
T Consensus       156 IG~~vA~~~~~fgm~V~~~d~~~~~  180 (311)
T PRK08410        156 IGKRVAKIAQAFGAKVVYYSTSGKN  180 (311)
T ss_pred             HHHHHHHHHhhcCCEEEEECCCccc
Confidence            9999999999999999999997643

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=7.1e-35  Score=245.33  Aligned_cols=158  Identities=18%  Similarity=0.193  Sum_probs=128.7

Q ss_pred             ceEEEeCCCCCCchhHHHHHhh-cccCceeeeCc-h-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQ-NYLSIKGLCFF-L-SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGV   92 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~-~~~~~~~~~~~-~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~i   92 (189)
                      |||++++...-.......+.++ .++++.+.... + ++.+.++++|+ +.+..++++++++++|+||||++.|+|+||+
T Consensus         1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   80 (317)
T PRK06487          1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV   80 (317)
T ss_pred             CeEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence            4677776642111111223343 34555554432 2 67888999999 6666789999999999999999999999999


Q ss_pred             ChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C--C--------CCCCCCCCEEEEEcCC
Q 044056           93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V--P--------TGETLLGKTVFISGFG  152 (189)
Q Consensus        93 d~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~--~--------~~~~l~gktvGIvG~G  152 (189)
                      |++++.++||.|+|+||+   ++++||||+++++|++.|++.          .  .        .+.+|.||||||||+|
T Consensus        81 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G  157 (317)
T PRK06487         81 DLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG  157 (317)
T ss_pred             CHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCC
Confidence            999999999999999999   889999999999999999997          1  1        2358999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +||+++|+++++|||+|++|||+.+
T Consensus       158 ~IG~~vA~~l~~fgm~V~~~~~~~~  182 (317)
T PRK06487        158 ELGGAVARLAEAFGMRVLIGQLPGR  182 (317)
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCCC
Confidence            9999999999999999999999754

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=8e-35  Score=244.88  Aligned_cols=123  Identities=28%  Similarity=0.376  Sum_probs=114.7

Q ss_pred             HHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHH
Q 044056           52 MHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL  129 (189)
Q Consensus        52 ~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~  129 (189)
                      +.+.++++|+ +.. ..+++.++++++|+||+|+..|+||||||+++++++||.|+|+|++   ..++||||++++||++
T Consensus        38 ~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa~  114 (324)
T COG1052          38 LAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILAL  114 (324)
T ss_pred             HHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHHH
Confidence            4777899999 554 6899999999999999999999999999999999999999999999   6699999999999999


Q ss_pred             HhcCC-------------C-----CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          130 LRKHI-------------V-----PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       130 ~R~~~-------------~-----~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++.             .     ..+.+++|||+||+|+|+||+++|+++++|||+|+||||+++
T Consensus       115 ~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~  180 (324)
T COG1052         115 ARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN  180 (324)
T ss_pred             hhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            99998             1     445799999999999999999999999999999999999985

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=9.7e-35  Score=244.48  Aligned_cols=158  Identities=28%  Similarity=0.341  Sum_probs=132.2

Q ss_pred             CcceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCC
Q 044056           15 SITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGL   89 (189)
Q Consensus        15 ~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~   89 (189)
                      .|++++..++..+..   +.++... .+.++...   ++ ++.+.++++|+ ++..+++++++++.+|+||||++.|+|+
T Consensus         2 ~~~~vl~~~~~~~~~---~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gv   77 (324)
T COG0111           2 MMIKVLVTDPLAPDA---LEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGV   77 (324)
T ss_pred             CcceeeccCccCHHH---HHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEccccc
Confidence            467888888775543   2222222 22333222   22 56788999998 5577899999999999999999999999


Q ss_pred             CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHH
Q 044056           90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIG  155 (189)
Q Consensus        90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG  155 (189)
                      |+||+++++++||.|+|+|+.   |+.+||||+++++|+++|+++              ...+.+|+||||||||+|+||
T Consensus        78 d~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG  154 (324)
T COG0111          78 DNIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIG  154 (324)
T ss_pred             cccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHH
Confidence            999999999999999999998   999999999999999999999              245679999999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCCCCc
Q 044056          156 VELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       156 ~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +++|++|++|||+|++|||+.++.
T Consensus       155 ~~va~~l~afgm~v~~~d~~~~~~  178 (324)
T COG0111         155 RAVAKRLKAFGMKVIGYDPYSPRE  178 (324)
T ss_pred             HHHHHHHHhCCCeEEEECCCCchh
Confidence            999999999999999999965553

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.3e-34  Score=244.15  Aligned_cols=156  Identities=19%  Similarity=0.215  Sum_probs=130.3

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeC----ch-hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF----FL-SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGL   89 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~   89 (189)
                      +|+|+++++..+..    .+.++...++.+...    +. ++.+.++++|+ +.+..++++++++++|+||||++.|+|+
T Consensus         2 ~~~vl~~~~~~~~~----~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~   77 (323)
T PRK15409          2 KPSVILYKALPDDL----LQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGY   77 (323)
T ss_pred             CceEEEeCCCCHHH----HHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceec
Confidence            37899999874332    344444334433221    22 56778899999 6565689999999999999999999999


Q ss_pred             CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C--C-----CCCCCCCCEEEEEcCC
Q 044056           90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V--P-----TGETLLGKTVFISGFG  152 (189)
Q Consensus        90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~--~-----~~~~l~gktvGIvG~G  152 (189)
                      |+||++++.++||+|+|+||+   ++++||||++++||+++|+++          .  .     .+.+|+||||||||+|
T Consensus        78 d~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  154 (323)
T PRK15409         78 DNFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG  154 (323)
T ss_pred             ccccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence            999999999999999999999   899999999999999999997          1  1     3568999999999999


Q ss_pred             HHHHHHHHHHc-cCCCEEEEEcCCCCC
Q 044056          153 NIGVELAKRLR-PFGVKIIAAKRSWAS  178 (189)
Q Consensus       153 ~IG~~vA~~l~-afG~~V~~~~r~~~~  178 (189)
                      +||+++|++++ +|||+|+||||+.++
T Consensus       155 ~IG~~va~~l~~~fgm~V~~~~~~~~~  181 (323)
T PRK15409        155 RIGMALAQRAHFGFNMPILYNARRHHK  181 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCch
Confidence            99999999998 999999999998543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.3e-34  Score=240.21  Aligned_cols=123  Identities=15%  Similarity=0.207  Sum_probs=113.6

Q ss_pred             hHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHH
Q 044056           51 SMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGL  129 (189)
Q Consensus        51 ~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~  129 (189)
                      ++.+.++++|+ +.+..++++++++++|+||||++.++|+|+||++++.++||.|+|+||+   ++++||||+++++|++
T Consensus        37 ~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~l~~  113 (314)
T PRK06932         37 QTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMIFAL  113 (314)
T ss_pred             HHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHHHHH
Confidence            67888999999 6666789999999999999999999999999999999999999999999   8999999999999999


Q ss_pred             HhcCC----------CC----------CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          130 LRKHI----------VP----------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       130 ~R~~~----------~~----------~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|+++          ..          .+.+|+||||||||+|+||+++|+++++|||+|++||++.
T Consensus       114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~  180 (314)
T PRK06932        114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG  180 (314)
T ss_pred             HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence            99987          11          2368999999999999999999999999999999999864

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=8.7e-34  Score=245.84  Aligned_cols=159  Identities=21%  Similarity=0.144  Sum_probs=130.8

Q ss_pred             CCCCcceEEEeCCCCCCchhHHHHHhhcc-c-Cceeee--Cch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEE
Q 044056           12 SDKSITLVLFRGPHFPASHNYAKGYLQNY-L-SIKGLC--FFL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIR   84 (189)
Q Consensus        12 ~~~~~~~ilv~~~~~~~~~~~~~~~l~~~-~-~~~~~~--~~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~   84 (189)
                      .-++||+|+++++..+..    .+.++.. . ++....  .++ ++.+.++++|+ ++. ..++++++++++|+||||++
T Consensus         6 ~~~~~~~ili~~~~~~~~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~   81 (409)
T PRK11790          6 LPKDKIKFLLLEGVHQSA----VEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGC   81 (409)
T ss_pred             CCCCCeEEEEECCCCHHH----HHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEE
Confidence            445678999998664332    2344332 1 232221  122 66778899999 443 45899999999999999999


Q ss_pred             cCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C----CCCCCCCCCEEEEEc
Q 044056           85 FRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V----PTGETLLGKTVFISG  150 (189)
Q Consensus        85 ~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~----~~~~~l~gktvGIvG  150 (189)
                      .|+|+||||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .    ..+.+|.||||||||
T Consensus        82 ~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG  158 (409)
T PRK11790         82 FCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVG  158 (409)
T ss_pred             CceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEEC
Confidence            99999999999999999999999999   899999999999999999997          1    235799999999999


Q ss_pred             CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          151 FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       151 ~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +|+||+++|+++++|||+|++|||+..
T Consensus       159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~  185 (409)
T PRK11790        159 YGHIGTQLSVLAESLGMRVYFYDIEDK  185 (409)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            999999999999999999999998754

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=4.6e-33  Score=235.77  Aligned_cols=155  Identities=20%  Similarity=0.287  Sum_probs=128.1

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeee----Cch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLC----FFL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGL   89 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~   89 (189)
                      |||+++.+..+..    .+.++...++.+..    .+. ++.+.++++|+ +.+ ..++++++++++|+||||++.|+|+
T Consensus         3 ~kil~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~   78 (333)
T PRK13243          3 PKVFITREIPENG----IEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY   78 (333)
T ss_pred             ceEEEECCCCHHH----HHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence            7899888653322    23344322343322    122 56778899999 554 3589999999999999999999999


Q ss_pred             CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------CC-----------CCCCCCCCEEEE
Q 044056           90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------VP-----------TGETLLGKTVFI  148 (189)
Q Consensus        90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~~-----------~~~~l~gktvGI  148 (189)
                      ||||+++++++||.|+|+||+   ++++||||++++||++.|+++          ..           .+.+|+||||||
T Consensus        79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI  155 (333)
T PRK13243         79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI  155 (333)
T ss_pred             cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence            999999999999999999999   899999999999999999987          11           246899999999


Q ss_pred             EcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          149 SGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       149 vG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ||+|+||+.+|++|++|||+|++|||++++
T Consensus       156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  185 (333)
T PRK13243        156 IGFGRIGQAVARRAKGFGMRILYYSRTRKP  185 (333)
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            999999999999999999999999998654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-32  Score=232.74  Aligned_cols=158  Identities=19%  Similarity=0.213  Sum_probs=135.9

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeCc----hhHHhhcCCCeE-Eec-CCCCCHHHHhcCC--CCeEEEEcCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFF----LSMHSLYASYGT-SEQ-MIASDSNVITRAN--PMNLIIRFRV   87 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~adv-i~~-~~~~~~~~l~~~p--~Lk~I~~~~a   87 (189)
                      ||||++++.. +...++..++++.+ ++++...+    ++..+.++++|+ +++ ..++++++++++|  +||||++.++
T Consensus         1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (330)
T PRK12480          1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA   78 (330)
T ss_pred             CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence            5999999987 44556677777665 55555532    256788999999 554 4589999999997  8999999999


Q ss_pred             CCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------C-------CCCCCCCCCEEEEEcCC
Q 044056           88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------V-------PTGETLLGKTVFISGFG  152 (189)
Q Consensus        88 G~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------~-------~~~~~l~gktvGIvG~G  152 (189)
                      |+|+||++++.++||.|+|+||+   ++++||||+++++|++.|+++        .       ..+++|+|+||||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G  155 (330)
T PRK12480         79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG  155 (330)
T ss_pred             ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence            99999999999999999999999   889999999999999999987        1       13568999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +||+.+|++|++|||+|++||++...
T Consensus       156 ~IG~~vA~~L~~~G~~V~~~d~~~~~  181 (330)
T PRK12480        156 RIGAATAKIYAGFGATITAYDAYPNK  181 (330)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCChhH
Confidence            99999999999999999999998654

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.98  E-value=9e-32  Score=239.89  Aligned_cols=154  Identities=31%  Similarity=0.354  Sum_probs=129.5

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLE   90 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d   90 (189)
                      |||+++++..+..    .+.++..+++++...   +. ++.+.++++|+ +++ ..++++++++++|+||||++.|+|+|
T Consensus         1 m~ili~~~~~~~~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   76 (526)
T PRK13581          1 MKVLVSDPISPAG----LEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD   76 (526)
T ss_pred             CeEEEeCCCCHHH----HHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            5788888764332    344544334454432   23 67788999999 554 35899999999999999999999999


Q ss_pred             cCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C----CCCCCCCCCEEEEEcCCHHHH
Q 044056           91 GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V----PTGETLLGKTVFISGFGNIGV  156 (189)
Q Consensus        91 ~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~----~~~~~l~gktvGIvG~G~IG~  156 (189)
                      |+|+++++++||.|+|+||+   ++.+||||+++++|+++|+++          .    ..+.+|.||||||||+|+||+
T Consensus        77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~  153 (526)
T PRK13581         77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS  153 (526)
T ss_pred             cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence            99999999999999999998   899999999999999999997          1    245789999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCC
Q 044056          157 ELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       157 ~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+|++|++|||+|++|||+..
T Consensus       154 ~vA~~l~~fG~~V~~~d~~~~  174 (526)
T PRK13581        154 EVAKRAKAFGMKVIAYDPYIS  174 (526)
T ss_pred             HHHHHHHhCCCEEEEECCCCC
Confidence            999999999999999999754

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.98  E-value=1.4e-31  Score=228.95  Aligned_cols=148  Identities=21%  Similarity=0.233  Sum_probs=124.6

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcCCh
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGVDI   94 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~   94 (189)
                      |||++.+..+ .    ..++++.+.++...+......+.++++|+ +++ .+++++++++ .|+||||+++++|+||||.
T Consensus         1 mkIl~d~~~~-~----~~~~~~~~~ev~~~~~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~   74 (378)
T PRK15438          1 MKILVDENMP-Y----ARELFSRLGEVKAVPGRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDE   74 (378)
T ss_pred             CEEEEeCCcc-h----HHHHHhhcCcEEEeCCCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCH
Confidence            6899887653 2    34566665555544322223456789999 554 4689999986 6999999999999999999


Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      +++.++||.|+|+||+   |+.+||||+++++|++.|+    .+.+|.||||||||+|+||+++|++|++|||+|++|||
T Consensus        75 ~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~----~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp  147 (378)
T PRK15438         75 AWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAER----DGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP  147 (378)
T ss_pred             HHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhcc----CCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence            9999999999999999   9999999999999999997    46799999999999999999999999999999999998


Q ss_pred             CCC
Q 044056          175 SWA  177 (189)
Q Consensus       175 ~~~  177 (189)
                      +..
T Consensus       148 ~~~  150 (378)
T PRK15438        148 PRA  150 (378)
T ss_pred             ccc
Confidence            654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.97  E-value=2e-31  Score=237.61  Aligned_cols=153  Identities=26%  Similarity=0.361  Sum_probs=126.4

Q ss_pred             eEEEeCCCCCCchhHHHHHhhcc-cCceeee-Cch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcC
Q 044056           18 LVLFRGPHFPASHNYAKGYLQNY-LSIKGLC-FFL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGV   92 (189)
Q Consensus        18 ~ilv~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~i   92 (189)
                      ||+++++..+..    .+.++.. .++.+.. .+. ++.+.++++|+ +++ ..++++++++++|+||||++.|+|+||+
T Consensus         1 ~vli~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   76 (525)
T TIGR01327         1 KVLIADPISPDG----IDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNI   76 (525)
T ss_pred             CEEEeCCCCHHH----HHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchh
Confidence            477777654332    2334332 2333222 123 67788999999 554 3589999999999999999999999999


Q ss_pred             ChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHHHHH
Q 044056           93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIGVEL  158 (189)
Q Consensus        93 d~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG~~v  158 (189)
                      |+++++++||.|+|+||+   ++.+||||++++||+++|+++              ...+.+|+||||||||+|+||+++
T Consensus        77 d~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~v  153 (525)
T TIGR01327        77 DIEAATARGILVVNAPTG---NTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIV  153 (525)
T ss_pred             cHHHHHHCCCEEEeCCCc---ChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHH
Confidence            999999999999999998   899999999999999999998              124678999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCC
Q 044056          159 AKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       159 A~~l~afG~~V~~~~r~~~  177 (189)
                      |++|++|||+|++|||+..
T Consensus       154 A~~l~~fG~~V~~~d~~~~  172 (525)
T TIGR01327       154 AKRAKAFGMKVLAYDPYIS  172 (525)
T ss_pred             HHHHHhCCCEEEEECCCCC
Confidence            9999999999999999743

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN03139 formate dehydrogenase; Provisional

Probab=99.97  E-value=2.6e-31  Score=228.01  Aligned_cols=124  Identities=25%  Similarity=0.340  Sum_probs=113.3

Q ss_pred             hHHhhcCCCeE-EecC---CCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHH
Q 044056           51 SMHSLYASYGT-SEQM---IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLM  126 (189)
Q Consensus        51 ~~~~~~~~adv-i~~~---~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~li  126 (189)
                      ++.+.++++|+ |...   .++++++++++|+||||++.|+|+||||++++.++||.|+|++|+   ++.+||||++++|
T Consensus        90 ~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~li  166 (386)
T PLN03139         90 ELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMRI  166 (386)
T ss_pred             HHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHHH
Confidence            56788999999 5432   369999999999999999999999999999999999999999998   9999999999999


Q ss_pred             HHHHhcCC----------C------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          127 LGLLRKHI----------V------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       127 L~~~R~~~----------~------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      |++.|++.          .      ..+.+|.||||||||+|+||+++|++|++|||+|++|||+..
T Consensus       167 L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~  233 (386)
T PLN03139        167 LILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKM  233 (386)
T ss_pred             HHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            99999997          1      135789999999999999999999999999999999999853

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.97  E-value=8.1e-31  Score=224.78  Aligned_cols=148  Identities=16%  Similarity=0.206  Sum_probs=125.3

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcCCh
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGVDI   94 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~   94 (189)
                      |||++.+..+ .    ..++++.+.++..........+.++++|+ +++ .+++++++++ .|+||||++.++|+||||.
T Consensus         1 mkI~~d~~~p-~----~~~~~~~~~~v~~~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~   74 (381)
T PRK00257          1 MKIVADENIP-L----LDAFFAGFGEIRRLPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLDL   74 (381)
T ss_pred             CEEEEecCch-h----HHHHHhhCCcEEEcCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccCH
Confidence            7899988873 2    34566665555443322223567899999 554 4689999998 5899999999999999999


Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      +++.++||.|+|+||+   ++.+||||+++++|++.|+    .+.+|.||||||||+|+||+.+|+++++|||+|++|||
T Consensus        75 ~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp  147 (381)
T PRK00257         75 DYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP  147 (381)
T ss_pred             HHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----cCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence            9999999999999999   9999999999999999997    56899999999999999999999999999999999998


Q ss_pred             CCC
Q 044056          175 SWA  177 (189)
Q Consensus       175 ~~~  177 (189)
                      +..
T Consensus       148 ~~~  150 (381)
T PRK00257        148 PRQ  150 (381)
T ss_pred             ccc
Confidence            654

>PRK07574 formate dehydrogenase; Provisional

Probab=99.97  E-value=4.8e-31  Score=226.43  Aligned_cols=124  Identities=28%  Similarity=0.381  Sum_probs=113.7

Q ss_pred             hHHhhcCCCeE-Eec---CCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHH
Q 044056           51 SMHSLYASYGT-SEQ---MIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLM  126 (189)
Q Consensus        51 ~~~~~~~~adv-i~~---~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~li  126 (189)
                      ++.+.++++|+ +..   ..++++++++++|+||||++.|+|+||+|++++.++||.|+|++|+   ++++||||+++++
T Consensus        83 ~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l~  159 (385)
T PRK07574         83 DFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMMI  159 (385)
T ss_pred             HHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHHH
Confidence            56788999999 543   3569999999999999999999999999999999999999999998   9999999999999


Q ss_pred             HHHHhcCC----------C------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          127 LGLLRKHI----------V------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       127 L~~~R~~~----------~------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      |++.|++.          .      ..+.+|.||||||||+|+||+++|++|++|||+|++|||+..
T Consensus       160 L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~  226 (385)
T PRK07574        160 LALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRL  226 (385)
T ss_pred             HHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            99999997          1      235789999999999999999999999999999999999863

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=99.97  E-value=5.1e-31  Score=217.77  Aligned_cols=156  Identities=24%  Similarity=0.254  Sum_probs=134.8

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhccc-CceeeeCc-h-hHHhhcCCCeE--EecCCCCCHHHHhc-CCCCeEEEEcCCCCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYL-SIKGLCFF-L-SMHSLYASYGT--SEQMIASDSNVITR-ANPMNLIIRFRVGLE   90 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~-~~~~~~~~-~-~~~~~~~~adv--i~~~~~~~~~~l~~-~p~Lk~I~~~~aG~d   90 (189)
                      -+||+.++..+..    .+.+++.. ++++.... . ++.+.++++|+  +...+++++++|+. ..+||+|.+.++|+|
T Consensus         7 ~~il~~e~~~~~~----~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~d   82 (406)
T KOG0068|consen    7 RKILVAESLDQAC----IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVD   82 (406)
T ss_pred             ceEEEecccchHH----HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCcc
Confidence            3799999986654    34555433 44444432 2 78889999999  45679999999994 569999999999999


Q ss_pred             cCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHHH
Q 044056           91 GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIGV  156 (189)
Q Consensus        91 ~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG~  156 (189)
                      ++|++++.++||.|.|+|.+   |..++|||++++++++.|+++              .+.+.+|.|||+||+|||+||+
T Consensus        83 NVDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGs  159 (406)
T KOG0068|consen   83 NVDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGS  159 (406)
T ss_pred             ccChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchH
Confidence            99999999999999999999   889999999999999999998              4678999999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCCCc
Q 044056          157 ELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       157 ~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ++|+++++|||+|++||+....+
T Consensus       160 eVA~r~k~~gm~vI~~dpi~~~~  182 (406)
T KOG0068|consen  160 EVAVRAKAMGMHVIGYDPITPMA  182 (406)
T ss_pred             HHHHHHHhcCceEEeecCCCchH
Confidence            99999999999999999986554

>PLN02306 hydroxypyruvate reductase

Probab=99.97  E-value=1.1e-30  Score=224.51  Aligned_cols=159  Identities=19%  Similarity=0.182  Sum_probs=127.4

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhcc-cCceeee-----Cch-hHHhhc-CCCeE-Eec-CCCCCHHHHhcCCC--CeE
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQNY-LSIKGLC-----FFL-SMHSLY-ASYGT-SEQ-MIASDSNVITRANP--MNL   81 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~-~~~~~~~-----~~~-~~~~~~-~~adv-i~~-~~~~~~~~l~~~p~--Lk~   81 (189)
                      ..+++|+++.+..+..   ..+.|+.. .++++..     .+. ++.+.+ .++|+ +.. ..++++++++++|+  |||
T Consensus        13 ~~~~~v~~~~~~~~~~---~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~   89 (386)
T PLN02306         13 NGKYRVVSTKPMPGTR---WINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKA   89 (386)
T ss_pred             CCCceEEEeCCCCcHH---HHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceE
Confidence            3478999988764321   12344332 2333211     123 566776 57998 554 46799999999995  699


Q ss_pred             EEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C-------CCCCCCCCC
Q 044056           82 IIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V-------PTGETLLGK  144 (189)
Q Consensus        82 I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~-------~~~~~l~gk  144 (189)
                      |++.++|+||||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .       ..+.+|.||
T Consensus        90 I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gk  166 (386)
T PLN02306         90 FSNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQ  166 (386)
T ss_pred             EEECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCC
Confidence            99999999999999999999999999998   899999999999999999996          1       125689999


Q ss_pred             EEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCCC
Q 044056          145 TVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWAS  178 (189)
Q Consensus       145 tvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~  178 (189)
                      ||||||+|+||+++|++++ +|||+|++|||+.++
T Consensus       167 tvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~  201 (386)
T PLN02306        167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQST  201 (386)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCch
Confidence            9999999999999999985 999999999998753

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.97  E-value=1.9e-30  Score=219.70  Aligned_cols=155  Identities=15%  Similarity=0.196  Sum_probs=126.3

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCC--CeEEEEcCCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SE-QMIASDSNVITRANP--MNLIIRFRVG   88 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p~--Lk~I~~~~aG   88 (189)
                      ++++++.+   ....++..+++.+ ++++...   .. +..+.++++|+ ++ ...++++++++.+|+  ||||++.|+|
T Consensus         4 ~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G   79 (332)
T PRK08605          4 IKIMSVRD---EDAPYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAG   79 (332)
T ss_pred             EEEEecCH---HHHHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccc
Confidence            45555554   2233445555543 4544322   12 56678899998 54 457899999999996  9999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------C-------CCCCCCCCCEEEEEcCCH
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------V-------PTGETLLGKTVFISGFGN  153 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------~-------~~~~~l~gktvGIvG~G~  153 (189)
                      +|++|+++++++||.|+|+||+   ++++||||+++++|++.|++.        .       ..+++|+|+||||||+|+
T Consensus        80 ~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~  156 (332)
T PRK08605         80 FDTYDLELATKYNLIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGR  156 (332)
T ss_pred             cchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCH
Confidence            9999999999999999999999   889999999999999999997        1       135689999999999999


Q ss_pred             HHHHHHHHH-ccCCCEEEEEcCCCCC
Q 044056          154 IGVELAKRL-RPFGVKIIAAKRSWAS  178 (189)
Q Consensus       154 IG~~vA~~l-~afG~~V~~~~r~~~~  178 (189)
                      ||+++|++| ++|||+|++||++..+
T Consensus       157 IG~~vA~~L~~~~g~~V~~~d~~~~~  182 (332)
T PRK08605        157 IGLAVAKIFAKGYGSDVVAYDPFPNA  182 (332)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCccH
Confidence            999999999 8999999999998643

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.95  E-value=1.3e-27  Score=200.64  Aligned_cols=155  Identities=13%  Similarity=0.153  Sum_probs=119.2

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChh
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVDID   95 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~   95 (189)
                      |.|++..+.. +...|...+.+..|++++..+..   ...+++|+ +.+.  .+.++++ .|+||||++.|+|+|++|..
T Consensus         1 ~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~---~~~~~a~~~~~~~--~~~~~l~-~~~Lk~I~~~~aG~d~i~~~   73 (312)
T PRK15469          1 MDIIFYHPTF-DTQWWIEALRKALPQARVRAWKS---GDNDPADYALVWH--PPVEMLA-GRDLKAVFALGAGVDSILSK   73 (312)
T ss_pred             CEEEEeCCcc-CHHHHHHHHHHHCCCCeEEecCC---CCCccCeEEEEeC--CChHHhc-cCCceEEEEcccccchhhhh
Confidence            4677777662 22334444334567777764442   12478888 6654  3567776 58999999999999999832


Q ss_pred             H-----HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------CCCCCCCCCCEEEEEcCCHHHHHH
Q 044056           96 A-----LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVEL  158 (189)
Q Consensus        96 ~-----~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~~~~~~l~gktvGIvG~G~IG~~v  158 (189)
                      .     +.++||+|+|+++.  +++.+||||+++++|++.|+++            .....++.||||||||+|+||+++
T Consensus        74 ~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~v  151 (312)
T PRK15469         74 LQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKV  151 (312)
T ss_pred             hccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHH
Confidence            2     44689999999764  2789999999999999999997            123568999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCCCcc
Q 044056          159 AKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       159 A~~l~afG~~V~~~~r~~~~~~  180 (189)
                      |++|++|||+|++||++.+..+
T Consensus       152 A~~l~afG~~V~~~~~~~~~~~  173 (312)
T PRK15469        152 AQSLQTWGFPLRCWSRSRKSWP  173 (312)
T ss_pred             HHHHHHCCCEEEEEeCCCCCCC
Confidence            9999999999999999876543

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.95  E-value=1.3e-27  Score=199.79  Aligned_cols=113  Identities=21%  Similarity=0.337  Sum_probs=97.5

Q ss_pred             cCCCeEE-ecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 044056           56 YASYGTS-EQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI  134 (189)
Q Consensus        56 ~~~advi-~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~  134 (189)
                      ..++|++ +...      +..+|+||||++.++|+||+|++++.++++.++|. |.   ++.+||||+++++|++.|+++
T Consensus        32 ~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~  101 (303)
T PRK06436         32 YYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNIC  101 (303)
T ss_pred             cCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChH
Confidence            4678884 4322      23468999999999999999999999988887775 66   889999999999999999997


Q ss_pred             ------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          135 ------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       135 ------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                                  .....+|+||||||||+|+||+++|+++++|||+|++|||+..+
T Consensus       102 ~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~  157 (303)
T PRK06436        102 ENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN  157 (303)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence                        23457999999999999999999999999999999999998654

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=99.94  E-value=1.5e-26  Score=193.77  Aligned_cols=123  Identities=33%  Similarity=0.444  Sum_probs=106.5

Q ss_pred             HhhcCCCeE-Ee--cCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHH
Q 044056           53 HSLYASYGT-SE--QMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG  128 (189)
Q Consensus        53 ~~~~~~adv-i~--~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~  128 (189)
                      .+.+.+... +.  .....+.+.+... |+||+|.++|+|+||||+++|++|||+|+|+|+.   +.++|||++++++|.
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil~  131 (336)
T KOG0069|consen   55 LKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLLA  131 (336)
T ss_pred             hhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHHH
Confidence            344455544 33  2345667776665 8999999999999999999999999999999999   789999999999999


Q ss_pred             HHhcCC----------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          129 LLRKHI----------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       129 ~~R~~~----------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.|++.                .+.+..+.||||||+|+|+||+++|+||++|||.+.|++|+...
T Consensus       132 ~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~  197 (336)
T KOG0069|consen  132 LLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLP  197 (336)
T ss_pred             HHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCc
Confidence            999998                34568999999999999999999999999999999999997664

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.78  E-value=5.6e-19  Score=131.01  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             EEEeCCCCCCchhHHHHHhhc-ccCceeeeCch--hHHhhcCCCeE-EecCCC-CCHHHHhcCCCCeEEEEcCCCCCcCC
Q 044056           19 VLFRGPHFPASHNYAKGYLQN-YLSIKGLCFFL--SMHSLYASYGT-SEQMIA-SDSNVITRANPMNLIIRFRVGLEGVD   93 (189)
Q Consensus        19 ilv~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~--~~~~~~~~adv-i~~~~~-~~~~~l~~~p~Lk~I~~~~aG~d~id   93 (189)
                      ||++++..+..    .+.|++ + ++++.....  ++.+.++++|+ +.+..+ +++++++.+|+||||++.|+|+|+||
T Consensus         1 ili~~~~~~~~----~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   75 (133)
T PF00389_consen    1 ILITDPLPDEE----IERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID   75 (133)
T ss_dssp             EEESSS-SHHH----HHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred             eEEeccCCHHH----HHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence            67888775443    455555 4 566555322  67889999999 665554 99999999999999999999999999


Q ss_pred             hhHHhhCCeEEEecCCCCCCCchhHHHHH
Q 044056           94 IDALTNCAIKAARILGDVSGNAASCAELS  122 (189)
Q Consensus        94 ~~~~~~~gI~v~n~~g~~~~~a~~vAE~~  122 (189)
                      +++++++||.|+|+||+   ++++||||+
T Consensus        76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a  101 (133)
T PF00389_consen   76 LEAAKERGIPVTNVPGY---NAEAVAEHA  101 (133)
T ss_dssp             HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred             HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence            99999999999999999   899999998

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.63  E-value=2.2e-15  Score=125.48  Aligned_cols=98  Identities=20%  Similarity=0.336  Sum_probs=86.7

Q ss_pred             CCHHHHhcCCCCeEEEEcCCCCCcCChh-HHhhCCeEEE------ecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 044056           68 SDSNVITRANPMNLIIRFRVGLEGVDID-ALTNCAIKAA------RILGDVSGNAASCAELSIYLMLGLLRKHIVPTGET  140 (189)
Q Consensus        68 ~~~~~l~~~p~Lk~I~~~~aG~d~id~~-~~~~~gI~v~------n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~  140 (189)
                      +++++++.+|   .++...+|+++.|++ .++++||+|+      |++.+   ++.++||+++.+++..       ...+
T Consensus        82 l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~---n~~~~Ae~ai~~al~~-------~~~~  148 (287)
T TIGR02853        82 LTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIY---NSIPTAEGAIMMAIEH-------TDFT  148 (287)
T ss_pred             ccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEE---ccHhHHHHHHHHHHHh-------cCCC
Confidence            5688888887   367788899999888 9999999999      88888   8899999999988863       3458


Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.|++++|+|+|+||+.+|++|++||++|.+++|+..+
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~  186 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSAD  186 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            99999999999999999999999999999999998643

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.55  E-value=2.5e-15  Score=116.85  Aligned_cols=58  Identities=45%  Similarity=0.651  Sum_probs=51.1

Q ss_pred             HHHHHHHHhcCC---------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          123 IYLMLGLLRKHI---------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       123 l~liL~~~R~~~---------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      ++++|++.|+++               ...+++++|+||||||+|+||+++|+++++|||+|++|||+.++.+
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence            589999999998               4567899999999999999999999999999999999999987644

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.55  E-value=5.5e-15  Score=124.15  Aligned_cols=125  Identities=21%  Similarity=0.329  Sum_probs=107.9

Q ss_pred             hHHh-hcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHH
Q 044056           51 SMHS-LYASYGT-SE-QMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLML  127 (189)
Q Consensus        51 ~~~~-~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL  127 (189)
                      ++.+ .+.++-. .. -+..++++.+++++.||++...+.|+|++|+.++.+.||.|||.|+.   .-+.+|+-++.++|
T Consensus        65 eIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl  141 (435)
T KOG0067|consen   65 EIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHIL  141 (435)
T ss_pred             HHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHH
Confidence            5543 3455544 33 34678999999999999999999999999999999999999999998   55999999999999


Q ss_pred             HHHhcCC---------------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          128 GLLRKHI---------------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       128 ~~~R~~~---------------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++|+-.                     ......+.|.++|++|+|++|++|+.++++||+.|+.||++..+
T Consensus       142 ~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~  213 (435)
T KOG0067|consen  142 NLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLID  213 (435)
T ss_pred             hhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhh
Confidence            9999988                     22345788999999999999999999999999999999998654

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.34  E-value=2.4e-12  Score=112.98  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=75.7

Q ss_pred             EcCCCCCcCC-hhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 044056           84 RFRVGLEGVD-IDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRL  162 (189)
Q Consensus        84 ~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l  162 (189)
                      -+++|+..+- +......+|+|+|+|++   +..+++|+++++++++...+.......+.||||||+|+|.||+.+|++|
T Consensus       197 eTttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL  273 (476)
T PTZ00075        197 ETTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQAL  273 (476)
T ss_pred             cchHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHH
Confidence            4667776652 22223368999999999   7899999999999998876665556799999999999999999999999


Q ss_pred             ccCCCEEEEEcCCCC
Q 044056          163 RPFGVKIIAAKRSWA  177 (189)
Q Consensus       163 ~afG~~V~~~~r~~~  177 (189)
                      ++|||+|+++++.+.
T Consensus       274 ~a~Ga~ViV~e~dp~  288 (476)
T PTZ00075        274 RGFGARVVVTEIDPI  288 (476)
T ss_pred             HHCCCEEEEEeCCch
Confidence            999999999977643

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.33  E-value=2.7e-11  Score=101.36  Aligned_cols=100  Identities=20%  Similarity=0.299  Sum_probs=82.6

Q ss_pred             CHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCC----CCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 044056           69 DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGD----VSGNAASCAELSIYLMLGLLRKHIVPTGETLLGK  144 (189)
Q Consensus        69 ~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~----~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gk  144 (189)
                      +.+.++.+|++..+. .|.+.++++ +.+.++||.+.+....    . -++.++||.++...+.       ....++.++
T Consensus        84 ~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~-~ns~~~aegav~~a~~-------~~~~~l~g~  153 (296)
T PRK08306         84 TEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI-LNSIPTAEGAIMMAIE-------HTPITIHGS  153 (296)
T ss_pred             hHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh-hccHhHHHHHHHHHHH-------hCCCCCCCC
Confidence            678999999997554 589999988 7889999999987642    0 1678899998776553       134578899


Q ss_pred             EEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          145 TVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       145 tvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +++|+|+|.+|+.+++.|+++|++|.+++|++..
T Consensus       154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~  187 (296)
T PRK08306        154 NVLVLGFGRTGMTLARTLKALGANVTVGARKSAH  187 (296)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            9999999999999999999999999999998643

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.59  E-value=3.8e-08  Score=82.85  Aligned_cols=40  Identities=38%  Similarity=0.524  Sum_probs=36.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...|+||||||||+|+||+++|++|++|||+|++|++..+
T Consensus        11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~   50 (335)
T PRK13403         11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGK   50 (335)
T ss_pred             hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcch
Confidence            4679999999999999999999999999999999987543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.42  E-value=3.2e-07  Score=80.29  Aligned_cols=89  Identities=20%  Similarity=0.277  Sum_probs=62.8

Q ss_pred             EEcCCCCCcCC-hhHHhhCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHH
Q 044056           83 IRFRVGLEGVD-IDALTNCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVE  157 (189)
Q Consensus        83 ~~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~  157 (189)
                      =-++.|+..+- .....+.++||.|+++..+.    |...+++.++-.+..       .....+.|++|+|+|+|.||+.
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r-------at~~~l~Gk~VlViG~G~IG~~  226 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKR-------ATNVLIAGKVVVVAGYGDVGKG  226 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHH-------hccCCCCCCEEEEECCCHHHHH
Confidence            34566766652 22223568999999987332    223355555543332       1234589999999999999999


Q ss_pred             HHHHHccCCCEEEEEcCCCCC
Q 044056          158 LAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       158 vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +|++|++||++|+++|+.+..
T Consensus       227 vA~~lr~~Ga~ViV~d~dp~r  247 (425)
T PRK05476        227 CAQRLRGLGARVIVTEVDPIC  247 (425)
T ss_pred             HHHHHHhCCCEEEEEcCCchh
Confidence            999999999999999987644

>PLN02494 adenosylhomocysteinase

Probab=98.28  E-value=1.1e-06  Score=77.54  Aligned_cols=41  Identities=24%  Similarity=0.469  Sum_probs=37.2

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ....+.||+|+|+|+|.||+.+|+++++|||+|+++++.+.
T Consensus       248 t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        248 TDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             cCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            34568999999999999999999999999999999988764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.24  E-value=4.2e-06  Score=66.30  Aligned_cols=59  Identities=29%  Similarity=0.302  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          117 SCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       117 ~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++.=++..+-..+++.  ..+.+++||+++|+|+|++|+.+|++|..+|++|+++|++..
T Consensus         4 aTg~Gv~~~~~~~~~~~--~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~   62 (200)
T cd01075           4 PTAYGVFLGMKAAAEHL--LGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEE   62 (200)
T ss_pred             hhHHHHHHHHHHHHHHh--cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            34444555555555542  136789999999999999999999999999999999998754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.11  E-value=6.7e-06  Score=71.65  Aligned_cols=90  Identities=21%  Similarity=0.234  Sum_probs=59.8

Q ss_pred             EEEEcCCCCCcCC-hhHHhhCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHH
Q 044056           81 LIIRFRVGLEGVD-IDALTNCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIG  155 (189)
Q Consensus        81 ~I~~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG  155 (189)
                      .+=-++.|+..+- .....+..+|+.++.+..+.    |...+.+.++-.++.       .....+.|++|+|+|+|.||
T Consensus       135 ~~EeTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~r-------~t~~~l~Gk~VvViG~G~IG  207 (406)
T TIGR00936       135 GSEETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQSTIDGILR-------ATNLLIAGKTVVVAGYGWCG  207 (406)
T ss_pred             EeecchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhcccccchhHHHHHHH-------hcCCCCCcCEEEEECCCHHH
Confidence            3345566666541 11122345777776665221    223455555544333       23346899999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCCC
Q 044056          156 VELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       156 ~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.+|+++++||++|+++++.+.
T Consensus       208 ~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       208 KGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             HHHHHHHhhCcCEEEEEeCChh
Confidence            9999999999999999987653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.94  E-value=9.4e-06  Score=62.06  Aligned_cols=40  Identities=30%  Similarity=0.553  Sum_probs=30.6

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ....+.||++.|+|||.+|+.+|+.|+++|++|+.++..|
T Consensus        17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   17 TNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             H-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            3467899999999999999999999999999999998754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.89  E-value=1.3e-05  Score=68.15  Aligned_cols=39  Identities=33%  Similarity=0.431  Sum_probs=35.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...|.+++|||||+|++|+++|+.|+.+|++|+++++..
T Consensus        12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~   50 (330)
T PRK05479         12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREG   50 (330)
T ss_pred             hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCc
Confidence            457899999999999999999999999999999887653

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.89  E-value=2.7e-05  Score=68.05  Aligned_cols=90  Identities=20%  Similarity=0.283  Sum_probs=59.9

Q ss_pred             EEEcCCCCCcCC-hhHHhhCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHH
Q 044056           82 IIRFRVGLEGVD-IDALTNCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGV  156 (189)
Q Consensus        82 I~~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~  156 (189)
                      +=-++.|+..+- ++...+..+||.++.+..+.    |...+.|.++-.++.       .....+.|++|+|+|+|.||+
T Consensus       143 ~EeTttGv~rl~~~~~~~~l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r-------~t~~~l~GktVvViG~G~IG~  215 (413)
T cd00401         143 SEETTTGVHRLYKMEKEGKLKFPAINVNDSVTKSKFDNLYGCRESLIDGIKR-------ATDVMIAGKVAVVAGYGDVGK  215 (413)
T ss_pred             eecchHHHHHHHHHHHCCCCCCCEEEecchhhcccccccchhchhhHHHHHH-------hcCCCCCCCEEEEECCCHHHH
Confidence            334566665542 11122245777776665221    333456655544433       245578999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCCC
Q 044056          157 ELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       157 ~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+|++++++|++|+++++.+..
T Consensus       216 ~va~~ak~~Ga~ViV~d~d~~R  237 (413)
T cd00401         216 GCAQSLRGQGARVIVTEVDPIC  237 (413)
T ss_pred             HHHHHHHHCCCEEEEEECChhh
Confidence            9999999999999999887543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02712 arogenate dehydrogenase

Probab=97.64  E-value=6.4e-05  Score=69.52  Aligned_cols=41  Identities=32%  Similarity=0.290  Sum_probs=37.9

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+.++.+++|||||+|.||+.+|+.++.+|++|.+|||+.
T Consensus       362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~  402 (667)
T PLN02712        362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD  402 (667)
T ss_pred             hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence            35678899999999999999999999999999999999974

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.46  E-value=0.00047  Score=55.67  Aligned_cols=56  Identities=34%  Similarity=0.470  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .+++-=++..+-..+++    ...++.+++|.|.|+|++|+.+|++|..+|++|+++..+
T Consensus         8 ~~Tg~Gv~~~~~~~~~~----~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076           8 EATGRGVAYATREALKK----LGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             ccchHHHHHHHHHHHHh----cCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            44555555566666664    237899999999999999999999999999999966543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PLN02256 arogenate dehydrogenase

Probab=97.38  E-value=0.00024  Score=59.76  Aligned_cols=37  Identities=35%  Similarity=0.374  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      +-.+++|||||+|.||+.+|+.++.+|.+|++|+++.
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            3467899999999999999999999999999999885

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.37  E-value=0.0034  Score=54.28  Aligned_cols=119  Identities=15%  Similarity=0.032  Sum_probs=67.9

Q ss_pred             CCeEEecCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCC------CCCCchhHHHHHHHHH----
Q 044056           58 SYGTSEQMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGD------VSGNAASCAELSIYLM----  126 (189)
Q Consensus        58 ~advi~~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~------~~~~a~~vAE~~l~li----  126 (189)
                      .+|+|..-.++..+-++.+ ++--++..+....+..-.+.+.++++........      .. .=.++|+.+=.+.    
T Consensus        66 ~~dii~~Vk~p~~~~~~~~~~g~~l~~~~~~a~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~-~l~~~~~iaG~~av~~a  144 (370)
T TIGR00518        66 DAELVLKVKEPLPEEYGYLRHGQILFTYLHLAAERALTDALLDSGTTAIAYETVQTADGALP-LLAPMSEVAGRLAAQVG  144 (370)
T ss_pred             cCCEEEEeCCCCHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeeeeeccCCCCc-cccchhHHHHHHHHHHH
Confidence            3788543333444444544 4444555555544555567777777655432111      00 0012333222211    


Q ss_pred             -HHHHhcCC-----CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          127 -LGLLRKHI-----VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       127 -L~~~R~~~-----~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                       -.+.|.++     ......+.+++|.|+|+|.+|+.+++.|+++|++|.++|++..
T Consensus       145 a~~~~~~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~  201 (370)
T TIGR00518       145 AYHLEKTQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID  201 (370)
T ss_pred             HHHhHhhcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence             12223222     1112246788999999999999999999999999999998753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.30  E-value=0.00094  Score=54.83  Aligned_cols=55  Identities=31%  Similarity=0.460  Sum_probs=46.7

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      .++++-=++..+..++++    ...++.|+||.|-|||++|+.+|+.|..+|++|++.+
T Consensus        14 ~~aTg~Gv~~~~~~~~~~----~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVs   68 (254)
T cd05313          14 PEATGYGLVYFVEEMLKD----RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLS   68 (254)
T ss_pred             CchhHHHHHHHHHHHHHh----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            466777777777777775    3688999999999999999999999999999999554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.20  E-value=0.0011  Score=53.22  Aligned_cols=36  Identities=44%  Similarity=0.695  Sum_probs=32.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ..++.|++|.|.|||++|+.+|+.|...|.+|++..
T Consensus        18 ~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vs   53 (217)
T cd05211          18 GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVS   53 (217)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            368999999999999999999999999999877654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.19  E-value=0.00087  Score=45.66  Aligned_cols=38  Identities=39%  Similarity=0.589  Sum_probs=34.1

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccC-CCEEEEEcC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPF-GVKIIAAKR  174 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r  174 (189)
                      ....+.+++++|+|.|.+|+.+++.+..+ +.+|..|||
T Consensus        17 ~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          17 TNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            34678999999999999999999999988 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.14  E-value=0.00036  Score=58.73  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|+.+||+|+|.+|.--.+.++||||+|.+.|++.++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k  217 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK  217 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence            7999999999999999999999999999999998644

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.13  E-value=0.0015  Score=57.72  Aligned_cols=56  Identities=21%  Similarity=0.469  Sum_probs=47.5

Q ss_pred             CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE-c
Q 044056          114 NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA-K  173 (189)
Q Consensus       114 ~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~-~  173 (189)
                      -.++++--++..+...+++    .+.++.|+||.|.|||++|+.+|+.|..+|++|++. |
T Consensus       207 r~~aTg~Gv~~~~~~~~~~----~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        207 RTEATGYGLVYFAEEMLKA----RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             CCCcccHHHHHHHHHHHHh----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            3456777777777777775    367899999999999999999999999999999998 5

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.05  E-value=0.00087  Score=49.63  Aligned_cols=40  Identities=30%  Similarity=0.415  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~  178 (189)
                      .+++++++.|+|.|.+|++++..|...|++ |..++|+..+
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~r   48 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPER   48 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence            478999999999999999999999999998 9999998543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.05  E-value=0.00069  Score=46.66  Aligned_cols=34  Identities=35%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             EEEEEcCCHHHHHHHHHHccCC---CEEE-EEcCCCCC
Q 044056          145 TVFISGFGNIGVELAKRLRPFG---VKII-AAKRSWAS  178 (189)
Q Consensus       145 tvGIvG~G~IG~~vA~~l~afG---~~V~-~~~r~~~~  178 (189)
                      +|||||+|++|+++++.+..-|   .+|. +++|+++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~   38 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEK   38 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHH
Confidence            6999999999999999999999   8999 55887654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02712 arogenate dehydrogenase

Probab=97.00  E-value=0.0011  Score=61.35  Aligned_cols=38  Identities=37%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..-+.++|||||+|.||+.+|+.++.+|.+|.+||++.
T Consensus        48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   85 (667)
T PLN02712         48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD   85 (667)
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34455799999999999999999999999999999873

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.92  E-value=0.0033  Score=55.51  Aligned_cols=56  Identities=25%  Similarity=0.484  Sum_probs=46.6

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      .++++-=++..+...+++    .+.+|.|+||.|.|+|++|+..|+.|..+|++|++++.
T Consensus       204 ~~aTg~Gv~~~~~~~~~~----~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        204 PEATGYGNIYFLMEMLKT----KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CcccHHHHHHHHHHHHHh----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            456666666666666665    36689999999999999999999999999999999554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.88  E-value=0.0032  Score=54.49  Aligned_cols=61  Identities=16%  Similarity=0.011  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHHHHhcCC---CCCCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          116 ASCAELSIYLMLGLLRKHI---VPTGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~---~~~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ....+-.+-.++..+|..-   .........++|+||| +|.+|+.+|+.++.-|..|.+||+..
T Consensus        68 ~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         68 PDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            5566777777887777655   2222333568999999 99999999999999999999999854

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=96.85  E-value=0.00065  Score=59.89  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=25.9

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ....|+||||+|||||+||+     ++||+|++.++++.
T Consensus        30 ~~~~LkgKtIaIIGyGSqG~-----AqAlNLrdSGvnVv   63 (487)
T PRK05225         30 GASYLKGKKIVIVGCGAQGL-----NQGLNMRDSGLDIS   63 (487)
T ss_pred             hhHHhCCCEEEEEccCHHHH-----HHhCCCccccceeE
Confidence            34689999999999999999     55555555555544

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.84  E-value=0.0021  Score=47.95  Aligned_cols=40  Identities=33%  Similarity=0.454  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      .++.+++++|+|+|.+|+.+++.+...| .+|..++|+...
T Consensus        15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~   55 (155)
T cd01065          15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEK   55 (155)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence            4577899999999999999999999886 789999997543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02477 glutamate dehydrogenase

Probab=96.81  E-value=0.0037  Score=54.76  Aligned_cols=55  Identities=31%  Similarity=0.495  Sum_probs=45.7

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      .++++-=++..+-..+++    .+.+|.|+||.|.|||++|+.+|+.|...|++|++..
T Consensus       182 ~~aTg~Gv~~~~~~~~~~----~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVs  236 (410)
T PLN02477        182 EAATGRGVVFATEALLAE----HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVS  236 (410)
T ss_pred             CccchHHHHHHHHHHHHH----cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            356677677777777765    4568999999999999999999999999999999653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.80  E-value=0.0019  Score=57.23  Aligned_cols=38  Identities=26%  Similarity=0.332  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -+.+++|+|+|+|..|+++|+.|+..|++|.++|+...
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            45689999999999999999999999999999998654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.80  E-value=0.017  Score=51.92  Aligned_cols=121  Identities=11%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             CCeEEecCCCCCHHHHhcCC-CCeEEEEcCCCCCcCChhHHhhCCeEEEe---cCC----CCCCCchhHHHHHHHHHHHH
Q 044056           58 SYGTSEQMIASDSNVITRAN-PMNLIIRFRVGLEGVDIDALTNCAIKAAR---ILG----DVSGNAASCAELSIYLMLGL  129 (189)
Q Consensus        58 ~advi~~~~~~~~~~l~~~p-~Lk~I~~~~aG~d~id~~~~~~~gI~v~n---~~g----~~~~~a~~vAE~~l~liL~~  129 (189)
                      ++|+|+.-.+++.+-++.++ +--+|....-..|.=.++.+.+++|.+..   .|.    -...-=.++|+.+=....-.
T Consensus        65 ~~diilkV~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~  144 (509)
T PRK09424         65 QSDIILKVNAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIE  144 (509)
T ss_pred             cCCEEEEeCCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHH
Confidence            57884433445555567774 55666666665555456788888887754   221    00000123444433222111


Q ss_pred             H-hcCC-CC-----CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          130 L-RKHI-VP-----TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       130 ~-R~~~-~~-----~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      . ..+. ..     ......+.+|.|+|.|.||...++.++++|++|+++|+++..
T Consensus       145 aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~r  200 (509)
T PRK09424        145 AAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEV  200 (509)
T ss_pred             HHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            1 2222 11     112456999999999999999999999999999999987644

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.80  E-value=0.0047  Score=54.55  Aligned_cols=54  Identities=30%  Similarity=0.509  Sum_probs=45.3

Q ss_pred             CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEE
Q 044056          114 NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA  171 (189)
Q Consensus       114 ~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~  171 (189)
                      -.++++-=++..+...+++    .+.+|.|+||.|-|+|++|+..|+.|..+|++|++
T Consensus       203 r~~ATg~Gv~~~~~~~~~~----~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa  256 (445)
T PRK14030        203 RPEATGFGALYFVHQMLET----KGIDIKGKTVAISGFGNVAWGAATKATELGAKVVT  256 (445)
T ss_pred             CCCccHHHHHHHHHHHHHH----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            3456676676666666665    35689999999999999999999999999999999

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.73  E-value=0.03  Score=50.45  Aligned_cols=121  Identities=12%  Similarity=0.044  Sum_probs=73.5

Q ss_pred             CCeEEecCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCC-------CCCCchhHHHHHHHH-HHH
Q 044056           58 SYGTSEQMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGD-------VSGNAASCAELSIYL-MLG  128 (189)
Q Consensus        58 ~advi~~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~-------~~~~a~~vAE~~l~l-iL~  128 (189)
                      ++|+|+.-.+++.+-++.+ ++--+|+...-.-|.=.++.+.+++|.+...--.       .-.-=.++|+.+=.. ++.
T Consensus        64 ~adiIlkV~~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~  143 (511)
T TIGR00561        64 QSDIILKVNAPSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIE  143 (511)
T ss_pred             cCCEEEEeCCCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHH
Confidence            5788443344555556776 4566666666555544467888888877652211       000112455544221 111


Q ss_pred             HHhcCC-C-----CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          129 LLRKHI-V-----PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       129 ~~R~~~-~-----~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++.+. .     .....+.+.++.|+|.|.+|...++.++++|++|+++|++...
T Consensus       144 Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~r  199 (511)
T TIGR00561       144 AAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEV  199 (511)
T ss_pred             HHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            112222 0     0112455789999999999999999999999999999987643

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.70  E-value=0.0023  Score=56.10  Aligned_cols=56  Identities=30%  Similarity=0.371  Sum_probs=43.2

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      +.+++..++-+...        ....+.+++|+|+|+|.||+.+++.|..+| .+|..++|+...
T Consensus       160 ~vSv~~~Av~la~~--------~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~r  216 (417)
T TIGR01035       160 AVSISSAAVELAER--------IFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYER  216 (417)
T ss_pred             CcCHHHHHHHHHHH--------HhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            35566666544332        123478999999999999999999999999 689999998654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=96.64  E-value=0.0022  Score=56.18  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=27.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHcc-CCCEEEE-EcCC
Q 044056          144 KTVFISGFGNIGVELAKRLRP-FGVKIIA-AKRS  175 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~a-fG~~V~~-~~r~  175 (189)
                      .+|||.|||+|||.++|.+.+ ++++|++ .|+.
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~  119 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF  119 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence            489999999999999999874 8999988 5544

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=96.51  E-value=0.0036  Score=49.90  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHH--HccCCCEEEE-EcCCC
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKR--LRPFGVKIIA-AKRSW  176 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~--l~afG~~V~~-~~r~~  176 (189)
                      +...++|.+..++...|++....    ..++++|+|+|.+|+.+++.  ....|+++.+ +|+.+
T Consensus        60 G~~~~gy~v~~l~~~~~~~l~~~----~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~  120 (213)
T PRK05472         60 GKRGVGYNVEELLEFIEKILGLD----RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP  120 (213)
T ss_pred             CCCCCCeeHHHHHHHHHHHhCCC----CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh
Confidence            35567899999999999877222    35789999999999999986  3478999876 55543

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.45  E-value=0.006  Score=47.63  Aligned_cols=40  Identities=30%  Similarity=0.440  Sum_probs=35.9

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +..+.++++.|+|. |.+|+.+++.+...|.+|..++|+..
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~   63 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLE   63 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            66789999999995 99999999999989999999998753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.44  E-value=0.0036  Score=52.37  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             HHHHHhcCC------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          126 MLGLLRKHI------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       126 iL~~~R~~~------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +=++.|++.      .......+.++||.||+|..|..++.-|-.-|.+|++|||+.++.
T Consensus        12 l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~   71 (327)
T KOG0409|consen   12 LEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC   71 (327)
T ss_pred             HHhhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH
Confidence            334555555      223445678999999999999999999999999999999987654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.42  E-value=0.0066  Score=42.77  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .++|++|.|||.|.+|..=++.|...|++|..+++..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            6899999999999999999999999999999999874

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.35  E-value=0.0076  Score=46.45  Aligned_cols=54  Identities=24%  Similarity=0.223  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEcCCCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++++.++-++-.        ...++.||++.|+|.|.+ |+.+|+.|...|++|...+|+.+
T Consensus        25 p~~~~a~v~l~~~--------~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~   79 (168)
T cd01080          25 PCTPAGILELLKR--------YGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK   79 (168)
T ss_pred             CChHHHHHHHHHH--------cCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence            4566655554333        345799999999999995 99999999999999999998754

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.34  E-value=0.0053  Score=53.96  Aligned_cols=39  Identities=41%  Similarity=0.578  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .+.+++|+|+|.|.||+.+++.+...|+ +|+.++|+...
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~r  218 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLER  218 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence            4789999999999999999999999998 79999998543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.32  E-value=0.0035  Score=53.44  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=35.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .|+.|+|+|+|..|....+.++++|++|+++|++.++.
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~  203 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL  203 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH
Confidence            39999999999999999999999999999999998754

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.32  E-value=0.0069  Score=50.21  Aligned_cols=41  Identities=27%  Similarity=0.392  Sum_probs=36.6

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      +.++.++++.|+|.|.+|++++..|..+| .+|..++|+...
T Consensus       118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~  159 (278)
T PRK00258        118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVER  159 (278)
T ss_pred             CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            34688999999999999999999999999 689999998643

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.29  E-value=0.0048  Score=52.85  Aligned_cols=40  Identities=35%  Similarity=0.594  Sum_probs=35.5

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .-.-+.||++-|.|||..|+-+|.++++.|++|+++.-.|
T Consensus       203 Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP  242 (420)
T COG0499         203 TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP  242 (420)
T ss_pred             hceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCc
Confidence            4457899999999999999999999999999999986543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.21  E-value=0.0069  Score=46.13  Aligned_cols=40  Identities=25%  Similarity=0.191  Sum_probs=36.1

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+|.|++|.|||-|++|...++.|...|++|..+++..
T Consensus         7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~   46 (157)
T PRK06719          7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI   46 (157)
T ss_pred             eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence            4468999999999999999999999999999999997654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.19  E-value=0.007  Score=50.85  Aligned_cols=54  Identities=17%  Similarity=0.150  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.-++-++-.        .+.++.||+|+|||.| .+|+.+|.+|..-|++|..|+++.+
T Consensus       140 PcTp~aii~lL~~--------~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~  194 (301)
T PRK14194        140 PCTPSGCLRLLED--------TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST  194 (301)
T ss_pred             CCcHHHHHHHHHH--------hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence            4445555444433        4679999999999996 9999999999999999999977654

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.17  E-value=0.016  Score=51.33  Aligned_cols=54  Identities=30%  Similarity=0.511  Sum_probs=43.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ++++-=++..+-..++.    .+.+|.|+||.|-|+|++|+..|++|..+|++|++.+
T Consensus       214 eATG~Gv~~~~~~~l~~----~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS  267 (454)
T PTZ00079        214 EATGYGLVYFVLEVLKK----LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS  267 (454)
T ss_pred             cccHHHHHHHHHHHHHH----cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            45555555555555554    4778999999999999999999999999999999544

>PLN02858 fructose-bisphosphate aldolase

Probab=96.16  E-value=0.005  Score=61.41  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..++||+||+|.+|..+|+.|...|++|.+|||++..
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~  359 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPT  359 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3489999999999999999999999999999998654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.11  E-value=0.0073  Score=50.92  Aligned_cols=38  Identities=37%  Similarity=0.561  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      +.+++|+|+|.|.||+.+++.++..| .+|..++|++..
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~r  214 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYER  214 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            78999999999999999999999876 579999998643

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.02  E-value=0.024  Score=46.32  Aligned_cols=54  Identities=33%  Similarity=0.519  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~  172 (189)
                      .+++-=++..+-..++++   ...++.|+|+.|-|+|++|+.+|+.|...|++|++.
T Consensus         8 ~aTg~GV~~~~~~~~~~~---~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~v   61 (244)
T PF00208_consen    8 EATGYGVAYAIEAALEHL---GGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAV   61 (244)
T ss_dssp             THHHHHHHHHHHHHHHHT---TCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHc---CCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            455556666666666652   334799999999999999999999999999999887

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.0088  Score=53.25  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -..+.+++|.|+|+|.+|+++|+.|...|++|.++|+..
T Consensus        10 ~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         10 LPQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             cccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            356788999999999999999999999999999999754

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.99  E-value=0.011  Score=52.71  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=36.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.++.+++++|+|.|.+|++++..+..+|++|..++|+..
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~  366 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKA  366 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578899999999999999999999999999999998753

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.71  E-value=0.014  Score=46.20  Aligned_cols=39  Identities=31%  Similarity=0.422  Sum_probs=35.6

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      ....|..++|+|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus        15 ~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        15 IVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3567889999999999999999999999999 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.71  E-value=0.014  Score=46.20  Aligned_cols=39  Identities=31%  Similarity=0.417  Sum_probs=35.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +..|.+++|.|+|+|.+|.++|+.|...|+ ++..+|+..
T Consensus        16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             HHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            467899999999999999999999999998 799999864

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN00203 glutamyl-tRNA reductase

Probab=95.68  E-value=0.014  Score=52.59  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      ++.+++|+|||.|.+|+.+++.|...|+ +|+.++|+...
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~er  302 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEER  302 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHH
Confidence            5889999999999999999999999997 69999998654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.60  E-value=0.012  Score=43.35  Aligned_cols=36  Identities=39%  Similarity=0.526  Sum_probs=30.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      +++|.|+|+|.+|.++|+.|...|+ ++..+|...=+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            6899999999999999999998898 68888875433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.58  E-value=0.022  Score=49.60  Aligned_cols=41  Identities=37%  Similarity=0.634  Sum_probs=36.4

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+.++.|+||.|=|+|+.|+..|+.|...|++|+++|-+..
T Consensus       201 ~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         201 LGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             cCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            45559999999999999999999999988999999986654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.53  E-value=0.043  Score=44.24  Aligned_cols=54  Identities=24%  Similarity=0.384  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE---EEEEcCCC
Q 044056          119 AELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVK---IIAAKRSW  176 (189)
Q Consensus       119 AE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~---V~~~~r~~  176 (189)
                      +=-+++.++...|.    .+.++.++++.|+|.|..|+.+|+.|...|++   |..+||+.
T Consensus         5 ~~v~lAG~~~al~~----~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311           5 AIVTLAGLLNALKL----VGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             HHHHHHHHHHHHHH----hCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            44556666666664    45679999999999999999999999999985   99999984

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.43  E-value=0.019  Score=47.93  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.++.||++.|||.|.| |+-+|.+|...|++|..+....
T Consensus       152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t  192 (285)
T PRK14189        152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT  192 (285)
T ss_pred             cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC
Confidence            467899999999999999 9999999999999998876543

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.39  E-value=0.022  Score=45.82  Aligned_cols=40  Identities=28%  Similarity=0.349  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      +..|.+++|.|+|+|.+|.++|+.|...|+ ++..+|...-
T Consensus        16 q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v   56 (228)
T cd00757          16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV   56 (228)
T ss_pred             HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            457889999999999999999999999998 6888887543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.38  E-value=0.03  Score=46.16  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+++++|+|.|.+|++++..+...|.+|..++|+..
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~  151 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVS  151 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45689999999999999999999989999999999754

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.37  E-value=0.016  Score=49.00  Aligned_cols=39  Identities=26%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH  179 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~  179 (189)
                      =.|+|+.|+|+|.+|.++++-++++|+ +|++.|-.+.+.
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf  230 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKF  230 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHH
Confidence            358999999999999999999999998 699999876543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.36  E-value=0.024  Score=47.63  Aligned_cols=53  Identities=17%  Similarity=0.179  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEc-CCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAK-RSW  176 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~-r~~  176 (189)
                      ..++.-++.++=.        ...++.||+|+||| .|.+|+.+|.+|..-|++|..|+ |+.
T Consensus       139 PcTp~ai~~ll~~--------~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~  193 (296)
T PRK14188        139 PCTPLGCMMLLRR--------VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR  193 (296)
T ss_pred             CCCHHHHHHHHHH--------hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence            4455555544422        34589999999999 99999999999998899999995 664

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.35  E-value=0.036  Score=36.86  Aligned_cols=35  Identities=34%  Similarity=0.416  Sum_probs=32.0

Q ss_pred             EEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          145 TVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       145 tvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ++.|||-|.||-++|..++.+|.+|..+.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            57899999999999999999999999999887655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.33  E-value=0.029  Score=46.73  Aligned_cols=40  Identities=23%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      ..+.++++.|+|.|..|++++..|...|+ +|..+||+..+
T Consensus       123 ~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~k  163 (284)
T PRK12549        123 PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPAR  163 (284)
T ss_pred             cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence            35678999999999999999999999998 79999998543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.29  E-value=0.031  Score=49.66  Aligned_cols=39  Identities=21%  Similarity=0.329  Sum_probs=35.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      +..+.++++.|+|.|.+|.++|+.|...|.+|.++|+..
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            446789999999999999999999999999999999764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.10  E-value=0.037  Score=47.33  Aligned_cols=39  Identities=31%  Similarity=0.480  Sum_probs=35.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +..|++++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus        19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            568999999999999999999999999998 788899865

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.06  E-value=0.037  Score=46.16  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      ..+.+|++.|+|.|.+|++++..|...|++ |..++|+.
T Consensus       122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            357899999999999999999999999997 99999975

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.00  E-value=0.013  Score=43.06  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=28.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE-cCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAA-KRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~-~r~~  176 (189)
                      -...+|||||.|+.|..+++.|+.-|..|.++ +|+.
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~   44 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP   44 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence            34679999999999999999999999998775 4553

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.00  E-value=0.054  Score=46.36  Aligned_cols=42  Identities=29%  Similarity=0.416  Sum_probs=35.4

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHc-cCCC-EEEEEcCCCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLR-PFGV-KIIAAKRSWA  177 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~-afG~-~V~~~~r~~~  177 (189)
                      ..+.++++|+|.|+|. |.||+.+++.|. ..|. +++.++|+..
T Consensus       148 ~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~  192 (340)
T PRK14982        148 RLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE  192 (340)
T ss_pred             HhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH
Confidence            3456899999999998 899999999996 5674 8999998743

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.94  E-value=0.047  Score=45.66  Aligned_cols=54  Identities=13%  Similarity=0.105  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.-++.++-.        ...++.||++.|||.|. +|+.+|..|...|++|..++++.+
T Consensus       139 PcTp~ai~~ll~~--------~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~  193 (286)
T PRK14175        139 PCTPLGIMEILKH--------ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK  193 (286)
T ss_pred             CCcHHHHHHHHHH--------cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence            4455555444433        45689999999999999 999999999999999998887543

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=94.91  E-value=0.044  Score=46.83  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .++.++++.|||.|.+|+.+|+.|..-|. +|...+|+..
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~  209 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL  209 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            46999999999999999999999999996 5999999854

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.85  E-value=0.042  Score=44.83  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +..|++++|+|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             HHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            568999999999999999999999998887 688888653

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.84  E-value=0.041  Score=42.08  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+...+|.|+|.|+.|+..++.|+++|++|..+|....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~   54 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE   54 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence            456679999999999999999999999999999998653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.74  E-value=0.053  Score=44.34  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -++-|+|-|.+++++|+.++.+|++|..+|+++.
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            5799999999999999999999999999997744

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=94.72  E-value=0.035  Score=46.78  Aligned_cols=35  Identities=29%  Similarity=0.684  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      -+.||.+-|.|||.+|+-.|+.|++||++|+...-
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEi  245 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEI  245 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEecc
Confidence            56799999999999999999999999999998643

>PRK08328 hypothetical protein; Provisional

Probab=94.66  E-value=0.047  Score=44.08  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=34.7

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ....|.+++|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus        21 ~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         21 GQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             HHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            3567889999999999999999999999998 588888654

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.59  E-value=0.05  Score=46.55  Aligned_cols=39  Identities=33%  Similarity=0.469  Sum_probs=35.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +..|..++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         19 QQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            467899999999999999999999999999 899999854

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.55  E-value=0.046  Score=43.11  Aligned_cols=42  Identities=19%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~  178 (189)
                      .+..|.+++|.|+|+|.+|.++|+.|...|+. +..+|...-+
T Consensus        15 ~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve   57 (197)
T cd01492          15 AQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT   57 (197)
T ss_pred             HHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCccc
Confidence            35678899999999999999999999999985 8888876433

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK04148 hypothetical protein; Provisional

Probab=94.54  E-value=0.039  Score=41.00  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +++++.+||+| -|..+|+.|+..|.+|++.|.++..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~a   51 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKA   51 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHH
Confidence            46899999999 9999999999999999999988763

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.53  E-value=0.094  Score=46.10  Aligned_cols=95  Identities=14%  Similarity=0.191  Sum_probs=60.2

Q ss_pred             CeEEEEcCCCCCcCChhHH-----hhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC-------------------
Q 044056           79 MNLIIRFRVGLEGVDIDAL-----TNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI-------------------  134 (189)
Q Consensus        79 Lk~I~~~~aG~d~id~~~~-----~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~-------------------  134 (189)
                      ++-+...++|.|..-+-+-     .++-...+...|.    ...+=+..+=..+...|++.                   
T Consensus        96 v~HLfrVasGLdSmVlGE~QIlgQVK~A~~~A~~~g~----~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~l  171 (414)
T PRK13940         96 IMHLMKLACGLESMVLGEPQILGQVKDSYTLSKKNHA----IGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITL  171 (414)
T ss_pred             HHHHHHHHhccchhhcCcHHHHHHHHHHHHHHHHcCC----chHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHH
Confidence            4455566777776432110     0111222222222    23455555666666666665                   


Q ss_pred             -CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          135 -VPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       135 -~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                       ......+.|+++.|+|.|.+|+.+|+.|...|. +|..++|+..
T Consensus       172 a~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~  216 (414)
T PRK13940        172 AKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIE  216 (414)
T ss_pred             HHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence             112346889999999999999999999999996 6999999854

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.51  E-value=0.063  Score=43.69  Aligned_cols=42  Identities=26%  Similarity=0.360  Sum_probs=35.7

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~  179 (189)
                      +..|++++|.|+|+|.+|..+|+.|...|. ++..+|+..-+.
T Consensus        19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~   61 (240)
T TIGR02355        19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL   61 (240)
T ss_pred             HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence            457899999999999999999999998887 588888765443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.37  E-value=0.075  Score=48.66  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .....|+|||||-|..|+.+++.++.+|++|+.+|+.+.
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED   56 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            457899999999999999999999999999999998754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.28  E-value=0.053  Score=38.31  Aligned_cols=33  Identities=33%  Similarity=0.623  Sum_probs=27.9

Q ss_pred             EEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          146 VFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       146 vGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +-|+|+|++|+.+++.|+..+.+|...++.+..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~   33 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER   33 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence            569999999999999999977799999987643

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06841 short chain dehydrogenase; Provisional

Probab=94.28  E-value=0.071  Score=42.65  Aligned_cols=38  Identities=26%  Similarity=0.370  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++.||++.|.|- |.||+++|+.+...|++|+..+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999995 99999999999999999999998754

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.28  E-value=0.06  Score=47.20  Aligned_cols=40  Identities=35%  Similarity=0.269  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..+..+++.|+|+|.+|+.+++.|...|.+|+.+|+.+..
T Consensus       227 ~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~  266 (453)
T PRK09496        227 LEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER  266 (453)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            3456899999999999999999999999999999887653

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.27  E-value=0.092  Score=43.84  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.++.||++.|+|.|. .|+.+|..|...|++|..+++..
T Consensus       153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t  193 (283)
T PRK14192        153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT  193 (283)
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            46789999999999998 99999999999999999888743

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=94.25  E-value=0.05  Score=46.54  Aligned_cols=34  Identities=38%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -++|||||+|+.|+-.|+.+..-|-.|+..||+.
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd   85 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD   85 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch
Confidence            4789999999999999999999999999999975

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.20  E-value=0.054  Score=45.23  Aligned_cols=52  Identities=13%  Similarity=0.110  Sum_probs=41.9

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      ...++.-++-++-.        .+.++.||+++|||. |-+|+.+|.+|..-|++|..|..
T Consensus       138 ~PcTp~avi~lL~~--------~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s  190 (284)
T PRK14179        138 IPCTPAGIMEMFRE--------YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS  190 (284)
T ss_pred             cCCCHHHHHHHHHH--------hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC
Confidence            34556655554432        467899999999999 99999999999999999999954

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.12  E-value=0.055  Score=46.80  Aligned_cols=70  Identities=19%  Similarity=0.147  Sum_probs=51.8

Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC-----CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-E
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI-----VPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-K  168 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~-----~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~  168 (189)
                      ..+.+.|.++...+..   .......        ..|++.     ...+..|.+++|.|+|+|.+|..+|+.|...|+ +
T Consensus        93 ~~W~~~g~p~~~~~~~---s~~~~~~--------y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~  161 (376)
T PRK08762         93 SAWKDAGLPLERPRLL---TDEQDER--------YSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGT  161 (376)
T ss_pred             HHHHhcCCccccccCC---CHHHHHH--------HHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCe
Confidence            4456678888877665   2233222        456655     112457999999999999999999999999998 6


Q ss_pred             EEEEcCC
Q 044056          169 IIAAKRS  175 (189)
Q Consensus       169 V~~~~r~  175 (189)
                      +..+|+.
T Consensus       162 i~lvD~d  168 (376)
T PRK08762        162 LGIVDHD  168 (376)
T ss_pred             EEEEeCC
Confidence            8899886

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.09  E-value=0.1  Score=37.99  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=27.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHcc-CCCE-EEEEcCCC
Q 044056          145 TVFISGF-GNIGVELAKRLRP-FGVK-IIAAKRSW  176 (189)
Q Consensus       145 tvGIvG~-G~IG~~vA~~l~a-fG~~-V~~~~r~~  176 (189)
                      +|+|+|+ |+.|+.+++.+.. =+++ +-++++..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~   36 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP   36 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence            6999999 9999999999986 7888 55666665

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.06  E-value=0.08  Score=41.75  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~  177 (189)
                      ...|++++|.|+|+|.+|.++|+.|..-|.+ +..+|...-
T Consensus        14 q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v   54 (198)
T cd01485          14 QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV   54 (198)
T ss_pred             HHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence            4578899999999999999999999988885 888886543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.05  E-value=0.087  Score=43.81  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .+.++++.|+|.|..|++++..|...|+ +|..++|+..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~  160 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD  160 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            4789999999999999999999999998 5999999854

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=93.97  E-value=0.1  Score=37.57  Aligned_cols=44  Identities=18%  Similarity=0.354  Sum_probs=37.4

Q ss_pred             CEEEEEc----CCHHHHHHHHHHccCCCEEEEEcCCCCCcccccccCC
Q 044056          144 KTVFISG----FGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS  187 (189)
Q Consensus       144 ktvGIvG----~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~  187 (189)
                      |++.|||    -++.|..+.+.++..|.+|+.+++...+..+..|+.|
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~s   48 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPS   48 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSS
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeecc
Confidence            6899999    7999999999999999999999999988888777655

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=93.93  E-value=0.099  Score=47.37  Aligned_cols=40  Identities=30%  Similarity=0.537  Sum_probs=35.8

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.+|++.|+|.|.+|++++..|...|++|..++|+.+
T Consensus       374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            3467899999999999999999999999999999998743

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.79  E-value=0.079  Score=42.25  Aligned_cols=40  Identities=28%  Similarity=0.241  Sum_probs=35.2

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      .+..|++++|.|+|+|.+|..+|+.|...|.. +..+|...
T Consensus        22 ~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         22 LLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             HHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            45678999999999999999999999988885 88888763

>PRK06153 hypothetical protein; Provisional

Probab=93.72  E-value=0.065  Score=46.57  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      ..|++++|+|||+|.+|..++..|...|. ++..+|.-
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            47899999999999999999999998898 68888864

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.67  E-value=0.099  Score=42.88  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      .|++|.|+|.|.||...++.++++|++ |+..+++.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~  155 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP  155 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            689999999999999999999999997 88887654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.66  E-value=0.14  Score=42.96  Aligned_cols=60  Identities=18%  Similarity=0.276  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCCccc
Q 044056          122 SIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWASHSQ  181 (189)
Q Consensus       122 ~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~  181 (189)
                      .++.++++...+.....++++|++|.|=|-|+ +||++|.-+...|+++..||.......+
T Consensus        17 ~~~~~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~e   77 (300)
T KOG1201|consen   17 LLALLESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEE   77 (300)
T ss_pred             HHHHHHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHH
Confidence            34455555555556688999999999999985 8999999999999999999988765444

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=93.63  E-value=0.078  Score=44.62  Aligned_cols=37  Identities=38%  Similarity=0.493  Sum_probs=32.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -|.||||+|||||+-|.+=|.-|+--|.+|++=-|..
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g   51 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKG   51 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCC
Confidence            6889999999999999999999999999977655543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.58  E-value=0.11  Score=44.05  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ..|++|.|+|.|.||...++.+++.|++|++++++
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            36899999999999999999999999999999874

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.54  E-value=0.092  Score=44.34  Aligned_cols=36  Identities=36%  Similarity=0.606  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|++|.|.|.|.+|...++.+++.|+ +|++.+++..
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~  205 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR  205 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence            58999999999999999999999999 5888887643

>PLN02740 Alcohol dehydrogenase-like

Probab=93.34  E-value=0.11  Score=44.72  Aligned_cols=37  Identities=32%  Similarity=0.466  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~  234 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE  234 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence            358999999999999999999999999 5999887643

>PRK07831 short chain dehydrogenase; Provisional

Probab=93.29  E-value=0.11  Score=41.92  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEcC-C-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGF-G-NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~-G-~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.+|++.|.|- | .||+++++.+...|++|+..+|...
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~   53 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHER   53 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4567899999997 6 6999999999999999999988654

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.28  E-value=0.12  Score=47.81  Aligned_cols=61  Identities=28%  Similarity=0.308  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHHHh--cCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          116 ASCAELSIYLMLGLLR--KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R--~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      ...||-++-|=|-+.|  -++......|++.+|.|+|.|.+|..+|+.|.+.|++ +..+|...
T Consensus       309 ~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~  372 (664)
T TIGR01381       309 KRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK  372 (664)
T ss_pred             HHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence            5788888877666654  3333334789999999999999999999999999994 88888643

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.25  E-value=0.13  Score=42.82  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~  175 (189)
                      .++++.|+|.|.||...++.++++|++ |++.++.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~  178 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN  178 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence            578999999999999999999999998 5556553

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.22  E-value=0.11  Score=43.70  Aligned_cols=36  Identities=22%  Similarity=0.196  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|.+|.|.|.|.+|...++.++++|++|++.+++..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~  200 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA  200 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            489999999999999999999999999999887643

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.22  E-value=0.14  Score=46.55  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...|++|.|||.|.+|-..|..|+..|.+|+.+++..
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            4579999999999999999999999999999999754

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.18  E-value=0.15  Score=43.48  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|++|.|.|.|.||...++.++++|++|+..+.+.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~  217 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS  217 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999999999999999999999998877654

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=93.14  E-value=0.16  Score=44.64  Aligned_cols=42  Identities=36%  Similarity=0.479  Sum_probs=36.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCcc
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASHS  180 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~  180 (189)
                      .+|.++++.|||.|.+|+.+|+.|...|. +|+..+|+.....
T Consensus       174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~  216 (414)
T COG0373         174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE  216 (414)
T ss_pred             cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence            44999999999999999999999999995 6888888865543

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.10  E-value=0.14  Score=44.13  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.7

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +..|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            567899999999999999999999999998 588888754

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.07  E-value=0.14  Score=43.31  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|.+|.|+|.|.||...++.+++.|.+|++.+++.
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~  200 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP  200 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            48999999999999999999999999999988754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=93.03  E-value=0.33  Score=42.53  Aligned_cols=70  Identities=24%  Similarity=0.306  Sum_probs=60.0

Q ss_pred             hCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCC
Q 044056           99 NCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRS  175 (189)
Q Consensus        99 ~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~  175 (189)
                      +..|+|.|.--      +.+|=-+++.+|+.+|-    .++.|++.+|.+.|.|.-|-++++.+.+.|+   +|+.+|+.
T Consensus       165 ~~~IPvFhDDq------qGTaiv~lA~llnalk~----~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~  234 (432)
T COG0281         165 RMNIPVFHDDQ------QGTAIVTLAALLNALKL----TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK  234 (432)
T ss_pred             cCCCCcccccc------cHHHHHHHHHHHHHHHH----hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence            45688888533      45788899999999984    7899999999999999999999999999999   59999987


Q ss_pred             CCC
Q 044056          176 WAS  178 (189)
Q Consensus       176 ~~~  178 (189)
                      +--
T Consensus       235 G~l  237 (432)
T COG0281         235 GLL  237 (432)
T ss_pred             Ccc
Confidence            543

>PRK08223 hypothetical protein; Validated

Probab=92.92  E-value=0.15  Score=42.63  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      .+..|++++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4567899999999999999999999999998 577777653

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=92.91  E-value=0.17  Score=43.25  Aligned_cols=36  Identities=31%  Similarity=0.364  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      -.|.+|.|+|.|.||...++.++++|+ +|++.+++.
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~  220 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP  220 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            348999999999999999999999999 799987754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=92.89  E-value=0.32  Score=40.52  Aligned_cols=55  Identities=25%  Similarity=0.382  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccC----CC-------EEEEEcCCC
Q 044056          118 CAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPF----GV-------KIIAAKRSW  176 (189)
Q Consensus       118 vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~af----G~-------~V~~~~r~~  176 (189)
                      +|=-+++.+|+..|-    .+..|.+.+|.|+|.|.-|-.+|+.+...    |+       +++.+|+.+
T Consensus         4 Ta~V~lAgllnAlk~----~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G   69 (279)
T cd05312           4 TAAVALAGLLAALRI----TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG   69 (279)
T ss_pred             HHHHHHHHHHHHHHH----hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence            566788999999984    67889999999999999999999999877    87       799999875

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=92.87  E-value=0.15  Score=41.12  Aligned_cols=39  Identities=31%  Similarity=0.464  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.+++|.|+| .|.||+.+++.|..-|.+|++..|...
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~   52 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD   52 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            456689999999 599999999999988999999887654

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=92.80  E-value=0.16  Score=43.32  Aligned_cols=37  Identities=32%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      -.|.+|.|+|.|.||...++.++++|+ +|++.+++..
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~  223 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPS  223 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            358999999999999999999999999 7999887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.77  E-value=0.16  Score=42.55  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      .|.+|.|+|.|.+|..+++.++.+|++ |++.+++.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~  198 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP  198 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            389999999999999999999999999 99988754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK06141 ornithine cyclodeaminase; Validated

Probab=92.68  E-value=0.15  Score=43.07  Aligned_cols=37  Identities=16%  Similarity=0.059  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHc-cCC-CEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLR-PFG-VKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~~  178 (189)
                      ..++|+|+|+|..|+..++.+. .++ -+|..|+|++..
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~  162 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK  162 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence            4789999999999999998554 356 579999998654

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.67  E-value=0.26  Score=40.84  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=36.8

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .....+.++++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        33 ~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~   75 (293)
T PRK05866         33 RQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED   75 (293)
T ss_pred             CCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3456788999999996 99999999999999999999998753

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.65  E-value=0.16  Score=43.71  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|++|.|.|.|.||...++.++++|++|++.+++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~  212 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS  212 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence            58999999999999999999999999999987654

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.56  E-value=0.16  Score=42.37  Aligned_cols=42  Identities=19%  Similarity=0.259  Sum_probs=37.1

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...++.||++.|||.|. +|+-+|.+|...|++|..+.++.+.
T Consensus       153 ~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~  195 (285)
T PRK10792        153 YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKN  195 (285)
T ss_pred             cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCC
Confidence            45689999999999999 9999999999999999998765443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=92.55  E-value=0.16  Score=44.01  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=35.9

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      .+..|.+++|.|+|+|.+|..+|+.|...|+ ++..+|...
T Consensus        35 ~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         35 QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             HHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4578999999999999999999999999998 788888753

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.47  E-value=0.23  Score=39.44  Aligned_cols=36  Identities=31%  Similarity=0.473  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..|++|.|.|.|.+|+.+++.++..|.+|++.+++.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~  168 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD  168 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            468999999999999999999999999999998864

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=92.43  E-value=0.15  Score=43.50  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      -.|.+|.|+|.|.||...++.++++|+ +|++.+++.
T Consensus       185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~  221 (368)
T cd08300         185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP  221 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            358999999999999999999999999 699887764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.40  E-value=0.15  Score=43.30  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      .|++|.|.|.|.||+.+++.++++|++ |++.+++.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~  211 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD  211 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            489999999999999999999999995 98887754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK07411 hypothetical protein; Validated

Probab=92.36  E-value=0.18  Score=43.96  Aligned_cols=39  Identities=23%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +..|+..+|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus        33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             HHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            468999999999999999999999999888 588888754

>PRK12862 malic enzyme; Reviewed

Probab=92.34  E-value=0.55  Score=44.50  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             CeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056          101 AIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRSW  176 (189)
Q Consensus       101 gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~~  176 (189)
                      +|++.|. +.     +.+|=-+++.+|+.+|-    .++.+.+.+|.|+|.|.-|-.+|+.+...|.   +++.+|+.+
T Consensus       161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~----~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G  229 (763)
T PRK12862        161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKL----VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG  229 (763)
T ss_pred             CCceEec-Cc-----ccHHHHHHHHHHHHHHH----hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence            6999997 33     56788899999999984    6789999999999999999999999998899   799999764

>PRK12367 short chain dehydrogenase; Provisional

Probab=92.34  E-value=0.21  Score=40.45  Aligned_cols=39  Identities=36%  Similarity=0.491  Sum_probs=34.3

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      +..+.||++.|.|- |.||+++|+.+..-|++|+..+|..
T Consensus         9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367          9 QSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            34578899999987 7899999999999999999998875

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=92.30  E-value=0.33  Score=37.35  Aligned_cols=41  Identities=32%  Similarity=0.361  Sum_probs=33.7

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++.||+|.|||-|..+-.+|..|...|-+|..+.|++.
T Consensus       161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  161 DPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             TTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             ChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            34578899999999999999999999999999999988763

...

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=92.28  E-value=0.23  Score=44.26  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=32.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      +++.|||-|-||-++|..++.||.+|..+.+...-.+
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp  210 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP  210 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            7899999999999999999999999999987655433

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=92.14  E-value=0.2  Score=41.87  Aligned_cols=43  Identities=40%  Similarity=0.483  Sum_probs=36.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCCcc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWASHS  180 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~~~  180 (189)
                      ...|.+.+|.|+|+|.+|.++|+-|..-|.+ |..+|...-+..
T Consensus        14 q~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~s   57 (286)
T cd01491          14 MKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWS   57 (286)
T ss_pred             HHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchh
Confidence            4578899999999999999999999999985 888987654443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.12  E-value=0.2  Score=41.88  Aligned_cols=54  Identities=19%  Similarity=0.158  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.-++.++=.        .+.++.||++.|||.|. +|+-+|.+|...|++|..++...+
T Consensus       145 PcTp~av~~ll~~--------~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~  199 (287)
T PRK14176        145 PCTPHGVIRALEE--------YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD  199 (287)
T ss_pred             CCcHHHHHHHHHH--------cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC
Confidence            4455555544432        46689999999999999 999999999999999998885543

>PRK12861 malic enzyme; Reviewed

Probab=92.08  E-value=0.47  Score=44.81  Aligned_cols=66  Identities=17%  Similarity=0.130  Sum_probs=58.1

Q ss_pred             CeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056          101 AIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRSW  176 (189)
Q Consensus       101 gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~~  176 (189)
                      .|++.|. +.     +.+|=-+++.+|+.+|-    .+..+.+.+|.|.|.|.-|..+|+.+...|.   +++.+|+.+
T Consensus       157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~----~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~G  225 (764)
T PRK12861        157 KIPVFHD-DQ-----HGTAITVSAAFINGLKV----VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEG  225 (764)
T ss_pred             CCCeecc-cc-----chHHHHHHHHHHHHHHH----hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCC
Confidence            7999986 33     56788899999999984    6788999999999999999999999999999   799999765

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=92.08  E-value=0.6  Score=44.13  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             CCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056          100 CAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRSW  176 (189)
Q Consensus       100 ~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~~  176 (189)
                      .+|++.|. +.     +.+|=-+++.+|+.+|-    .+..+.+.+|.|.|.|.-|-.+|+.+...|.   +++.+|+.+
T Consensus       152 ~~ip~f~D-D~-----~GTa~v~lA~l~na~~~----~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G  221 (752)
T PRK07232        152 MDIPVFHD-DQ-----HGTAIISAAALLNALEL----VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG  221 (752)
T ss_pred             cCCCeecc-cc-----chHHHHHHHHHHHHHHH----hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence            36899986 33     56788899999999984    6789999999999999999999999998898   799999874

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=92.05  E-value=0.086  Score=48.67  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=33.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      ...+-|+|+|++|+.+|+.|+..|.++...|..++..+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~  437 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIE  437 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence            46899999999999999999999999999998765433

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=92.03  E-value=0.23  Score=43.42  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=24.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHc--cC-CCEEEEEc
Q 044056          144 KTVFISGFGNIGVELAKRLR--PF-GVKIIAAK  173 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~--af-G~~V~~~~  173 (189)
                      .+|||.|+|+||+.+.+.+.  .| ..+|.+.+
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaIN   93 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIN   93 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            58999999999999999986  34 46788443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.01  E-value=0.079  Score=48.15  Aligned_cols=37  Identities=19%  Similarity=0.469  Sum_probs=32.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      -.+-|+|+|++|+.+|+.|+..|.+|+..|+.++..+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~  454 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVD  454 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHH
Confidence            5688999999999999999999999999998765443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.00  E-value=0.17  Score=43.23  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|.+|.|.|.|.||...++.++..|+ +|++.+++..
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~  227 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED  227 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence            48999999999999999999999999 5998887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.94  E-value=0.3  Score=39.22  Aligned_cols=37  Identities=27%  Similarity=0.340  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ..+.||++.|.|- |.||+++|+.+...|++|+..++.
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3588999999986 899999999999999999999887

>PRK06196 oxidoreductase; Provisional

Probab=91.94  E-value=0.31  Score=40.66  Aligned_cols=39  Identities=28%  Similarity=0.456  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.+|++.|.|- |.||+++|+.+..-|++|+..+|+..
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578999999997 88999999999999999999998754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.91  E-value=0.25  Score=40.93  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ....|++++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        24 ~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         24 ALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             HHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            3467899999999999999999999998884 688888653

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=91.87  E-value=0.29  Score=40.65  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.|.+|.|+|.|.+|+.+++.++++|++|+..+++..
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~  197 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPD  197 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578999999999999999999999999999887653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=91.86  E-value=0.22  Score=43.44  Aligned_cols=39  Identities=21%  Similarity=0.226  Sum_probs=34.1

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ...|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        37 q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             HHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            457889999999999999999999998887 588888654

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=91.84  E-value=0.27  Score=35.33  Aligned_cols=32  Identities=31%  Similarity=0.372  Sum_probs=25.3

Q ss_pred             EEEEEc-CCHHHHHHHHHHc-cCCCEEEEE-cCCC
Q 044056          145 TVFISG-FGNIGVELAKRLR-PFGVKIIAA-KRSW  176 (189)
Q Consensus       145 tvGIvG-~G~IG~~vA~~l~-afG~~V~~~-~r~~  176 (189)
                      +||||| .|.+|+++.++|. -..+++... +++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            699999 9999999999997 667775554 4443

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=91.76  E-value=0.29  Score=41.61  Aligned_cols=36  Identities=22%  Similarity=0.376  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.|. |.+|...++.++++|++|++.+++.
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~  193 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS  193 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            35899999999 9999999999999999999987654

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.72  E-value=0.24  Score=41.58  Aligned_cols=36  Identities=31%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.++.|.|.|.+|+.+++.++++|++|++.+++.
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~  203 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSP  203 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            457899999999999999999999999999998864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=91.72  E-value=0.23  Score=44.22  Aligned_cols=85  Identities=21%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             CCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHH
Q 044056           76 ANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIG  155 (189)
Q Consensus        76 ~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG  155 (189)
                      +|=|+.+...--|--+||+..+...- .  .. +    ....+-+|+-.-+-...-     .......++|||-|||+||
T Consensus        73 ~~~~~~~~~~~l~~~~~d~g~l~~~~-~--~~-~----~~~~~~~~~~~~l~~~~~-----~~~~~~~~~V~InGFGRIG  139 (477)
T PRK08289         73 FPILEALSKLDLGPARVDIGKLAVKY-K--AE-G----DGSDVEAFVAEELADAVG-----GADDIEPRDVVLYGFGRIG  139 (477)
T ss_pred             HHHHHHHHhCCCCcccccHHHHHHHH-h--hc-c----CCCcHHHHHHHHHhhhhc-----CCCCCCCceEEEECCCHHH
Confidence            34455555555666678876553221 1  11 1    224455554332222111     1113557899999999999


Q ss_pred             HHHHHHHc-c----CCCEEEEEc
Q 044056          156 VELAKRLR-P----FGVKIIAAK  173 (189)
Q Consensus       156 ~~vA~~l~-a----fG~~V~~~~  173 (189)
                      |.++|.+- .    -+++|.+..
T Consensus       140 R~v~R~~~~~~~~~~~l~lvAIn  162 (477)
T PRK08289        140 RLLARLLIEKTGGGNGLRLRAIV  162 (477)
T ss_pred             HHHHHHHHhccCCCCCeEEEEEe
Confidence            99999873 2    578888884

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=91.66  E-value=0.36  Score=40.31  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +.++.+|++.|+|.|..+++++-.+...|+ +|..++|+.
T Consensus       119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            346789999999999999999999988897 799999985

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=91.60  E-value=0.3  Score=41.59  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ..|.+|.|+|.|.+|...++.++++|+ +|++.+++.
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~  219 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE  219 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            458999999999999999999999999 699888753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.56  E-value=0.33  Score=40.20  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.|.|.+|+.+++.++..|.+|++.+++.
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~  189 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHS  189 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            458999999999999999999999999999887653

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK06197 short chain dehydrogenase; Provisional

Probab=91.50  E-value=0.3  Score=40.46  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.||++.|.|- |.||+++|+.+...|++|+..+|+..
T Consensus        11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~   51 (306)
T PRK06197         11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD   51 (306)
T ss_pred             cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45788999999985 89999999999999999999888643

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.47  E-value=0.32  Score=40.68  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.|.|.+|+.+++.++++|++|++.+++.
T Consensus       162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~  197 (333)
T cd08296         162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS  197 (333)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence            358999999999999999999999999999998764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=91.47  E-value=0.32  Score=40.78  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.|. |.+|+.+++.++.+|++|++..++.
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~  186 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD  186 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35899999998 9999999999999999999887754

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=91.46  E-value=0.44  Score=39.18  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-----------EEEEEcCCC
Q 044056          118 CAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-----------KIIAAKRSW  176 (189)
Q Consensus       118 vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-----------~V~~~~r~~  176 (189)
                      +|=-+++.+|+.+|-    .+..|.+.++.|+|.|.-|-.+|+.+...++           +++.+|+..
T Consensus         4 TaaV~lAgllnAlk~----~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G   69 (254)
T cd00762           4 TASVAVAGLLAALKV----TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG   69 (254)
T ss_pred             hHHHHHHHHHHHHHH----hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence            466788899999984    6788999999999999999999999988777           588888764

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=91.46  E-value=0.36  Score=38.91  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=37.5

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +...++.|+.|.|||-|.++..=++.|..+|++|..+++...+
T Consensus        18 pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~   60 (223)
T PRK05562         18 FISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSK   60 (223)
T ss_pred             eeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence            3456788999999999999999889998999999999987654

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=91.36  E-value=0.37  Score=40.18  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      ++.+|++.|+|.|..|++++--|...|+ +|..++|+..+
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k  163 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR  163 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence            4668999999999999999999999998 68899997543

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.28  E-value=0.26  Score=46.44  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=32.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++|+|||.|.+|..+|..+..-|++|..||++...
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~  370 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAG  370 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHH
Confidence            68999999999999999999889999999987643

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02780 ketoreductase/ oxidoreductase

Probab=91.18  E-value=0.48  Score=39.95  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..|+++.|.|. |.||+++|+.+..-|++|+.++|+...
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~   89 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDK   89 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            37999999995 789999999999999999999987643

>PRK08324 short chain dehydrogenase; Validated

Probab=91.14  E-value=0.37  Score=44.92  Aligned_cols=42  Identities=31%  Similarity=0.438  Sum_probs=36.7

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ....+.||++.|.| .|.||+.+|+.+...|++|+..+|+...
T Consensus       416 ~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        416 KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA  458 (681)
T ss_pred             CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH
Confidence            44567899999999 6999999999999999999999987643

>PLN02253 xanthoxin dehydrogenase

Probab=91.14  E-value=0.44  Score=38.76  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=34.4

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|- |.||+++|+.+..-|++|+..++...
T Consensus        13 ~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~   53 (280)
T PLN02253         13 SQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDD   53 (280)
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            44678999999985 78999999999999999999988643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=91.10  E-value=0.12  Score=47.47  Aligned_cols=38  Identities=24%  Similarity=0.395  Sum_probs=33.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      ...+-|+|+|++|+.+++.|+..|.+++..|..++..+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~  437 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVN  437 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence            45799999999999999999999999999998765443

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.09  E-value=0.3  Score=41.52  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|.+|.|+|.|.||-....-+++||+ +|+..|....
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~  205 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN  205 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH
Confidence            48999999999999999999999998 5888876543

>PRK13529 malate dehydrogenase; Provisional

Probab=91.08  E-value=1.5  Score=39.94  Aligned_cols=91  Identities=18%  Similarity=0.148  Sum_probs=68.5

Q ss_pred             cCCCCeEEEEcCCCCCc-CChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH
Q 044056           75 RANPMNLIIRFRVGLEG-VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN  153 (189)
Q Consensus        75 ~~p~Lk~I~~~~aG~d~-id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~  153 (189)
                      .+|+. +|+.==-+..+ +.+-.-.+..|++.|.-=      +.+|--+++.+|+..|-    .+..|.+.++.|+|.|.
T Consensus       237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi------QGTaaV~LAgll~A~r~----~g~~l~d~riv~~GAGs  305 (563)
T PRK13529        237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI------QGTGAVTLAGLLAALKI----TGEPLSDQRIVFLGAGS  305 (563)
T ss_pred             hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc------chHHHHHHHHHHHHHHH----hCCChhhcEEEEECCCH
Confidence            35665 66655444444 333333455788888532      56788999999999994    67899999999999999


Q ss_pred             HHHHHHHHHcc----CCC-------EEEEEcCCC
Q 044056          154 IGVELAKRLRP----FGV-------KIIAAKRSW  176 (189)
Q Consensus       154 IG~~vA~~l~a----fG~-------~V~~~~r~~  176 (189)
                      .|-.+|+.+..    -|+       +++.+|+.+
T Consensus       306 AgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G  339 (563)
T PRK13529        306 AGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG  339 (563)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence            99999999975    587       789998874

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=91.03  E-value=0.33  Score=34.25  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=26.0

Q ss_pred             EEEEEcCCHHHHHHHHHHccC--CCEEE-EEcCCCC
Q 044056          145 TVFISGFGNIGVELAKRLRPF--GVKII-AAKRSWA  177 (189)
Q Consensus       145 tvGIvG~G~IG~~vA~~l~af--G~~V~-~~~r~~~  177 (189)
                      ++||||+|.+|+...+-+...  ++++. .+|+++.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~   37 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPE   37 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHH
Confidence            699999999999999777755  67765 5777643

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.98  E-value=0.37  Score=38.93  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      -.|.++.|.|.|.+|+.+++.++++|++ |++.+++.
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~  132 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA  132 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH
Confidence            4689999999999999999999999999 99988753

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.96  E-value=0.3  Score=45.93  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++|+|||.|.+|..+|..+..-|++|..||++...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA  348 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            68999999999999999999889999999988644

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=90.94  E-value=0.41  Score=40.56  Aligned_cols=38  Identities=26%  Similarity=0.242  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+++++|.|.| .|-||+.+++.|..-|.+|+++|+..
T Consensus        11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            356789999999 59999999999998899999999854

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.92  E-value=0.27  Score=41.83  Aligned_cols=36  Identities=22%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..|.+|.|.|.|.||..+++.+++.|++|+..+++.
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~  214 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSD  214 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            468999999999999999999999999998887654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.85  E-value=0.31  Score=45.82  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++|+|||.|.+|..+|..+..-|++|..||++...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS  348 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            57999999999999999999889999999988654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=90.85  E-value=0.3  Score=41.28  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHcc-CC-CEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRP-FG-VKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~a-fG-~~V~~~~r~~~~  178 (189)
                      .|.+|.|+|.|.||...++.++. +| .+|++.+++..+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k  201 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEK  201 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhH
Confidence            58999999999999999999885 65 689999987544

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK06701 short chain dehydrogenase; Provisional

Probab=90.82  E-value=0.45  Score=39.30  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.||++.|.| .|.||.++|+.+..-|++|+.+++..
T Consensus        41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3578899999998 58899999999999999999998865

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=90.81  E-value=0.33  Score=42.59  Aligned_cols=39  Identities=36%  Similarity=0.519  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.||++.|.|- |.||+++|+.+..-|++|+..+|+..
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~  213 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSD  213 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4678999999987 89999999999999999999988653

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=90.80  E-value=0.35  Score=40.74  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      -.|++|.|.|.|.+|...++.++.+|.+ |++.+++.
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~  195 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS  195 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            3589999999999999999999999997 67777654

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=90.78  E-value=0.42  Score=40.43  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      .|++|.|.|.|.+|+.+++.++.+|+ +|++.+++.
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~  212 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP  212 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            68999999999999999999999999 899887654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.76  E-value=0.41  Score=40.96  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .||.|+|.|.||...++.++.+|+ +|+..|++...
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R  205 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER  205 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH
Confidence            399999999999999999999997 58888886544

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=90.54  E-value=0.43  Score=43.71  Aligned_cols=39  Identities=26%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .-.|+++.|.|. |.||+++++.|...|++|.+++|....
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ek  116 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQR  116 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            345799999986 999999999999999999999887543

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=90.51  E-value=0.44  Score=40.95  Aligned_cols=35  Identities=31%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+++|.|.|- |-||+.+++.|..-|.+|++.+|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            5789999997 9999999999999999999999754

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.50  E-value=0.35  Score=45.31  Aligned_cols=34  Identities=24%  Similarity=0.142  Sum_probs=30.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~  177 (189)
                      ++|+|||.|.+|..+|..+. .-|++|..||++..
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            58999999999999999987 57999999999854

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=90.49  E-value=0.35  Score=42.77  Aligned_cols=32  Identities=22%  Similarity=0.397  Sum_probs=26.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHc-c--CCCEEEEEcC
Q 044056          143 GKTVFISGFGNIGVELAKRLR-P--FGVKIIAAKR  174 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~-a--fG~~V~~~~r  174 (189)
                      -.+|||=|||+|||.+.|.+. .  -.++|.+.+-
T Consensus        75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd  109 (442)
T PLN02237         75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  109 (442)
T ss_pred             eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECC
Confidence            368999999999999999854 2  4688888764

>PRK06720 hypothetical protein; Provisional

Probab=90.45  E-value=0.5  Score=36.19  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+.+|++-|.|-+ .||+++|+.+..-|++|+.++++.+
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~   51 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE   51 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999976 5999999999999999999998644

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=90.40  E-value=0.45  Score=39.52  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      ..|.+|.|+|.|.+|+.+++.+++.|++ |+..+++.
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~  194 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNE  194 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            4578999999999999999999999998 88887654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.34  E-value=0.45  Score=44.12  Aligned_cols=37  Identities=30%  Similarity=0.259  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.|++|.|||.|..|...|..|...|.+|..|++...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4799999999999999999999999999999998643

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.34  E-value=0.47  Score=39.49  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=31.7

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|.+|.|.| -|.+|+.+++.++.+|++|++.+++.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~  173 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD  173 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 59999999999999999999887764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.28  E-value=0.88  Score=39.95  Aligned_cols=41  Identities=7%  Similarity=0.097  Sum_probs=35.7

Q ss_pred             CCCCCCCEEEEEcC----------CHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGF----------GNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~----------G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      +.++.+++|+|+|+          ..-...+++.|...| ++|.+|||...+
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~  366 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQ  366 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCc
Confidence            56789999999998          567889999999996 999999998544

>PRK07985 oxidoreductase; Provisional

Probab=90.27  E-value=0.52  Score=39.00  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.+|++.|.|- |.||+++|+.|...|++|+..++..
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~   83 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPV   83 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCc
Confidence            478999999985 8999999999999999999877653

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=90.25  E-value=0.4  Score=39.56  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=31.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|.+|.|.|. |.+|+.+++.++++|++|++.+.+.
T Consensus       146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~  181 (324)
T cd08288         146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRP  181 (324)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999998 9999999999999999999887654

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=90.22  E-value=0.36  Score=40.45  Aligned_cols=37  Identities=22%  Similarity=0.330  Sum_probs=33.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.+++|.|.|.|.+|+.+++.++++|++|+..+++..
T Consensus       164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~  200 (345)
T cd08260         164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDD  200 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            3589999999999999999999999999999877643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK05854 short chain dehydrogenase; Provisional

Probab=90.20  E-value=0.62  Score=38.95  Aligned_cols=40  Identities=33%  Similarity=0.511  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.||++-|.| .|.||+++|+.|..-|++|+...|+..
T Consensus         9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~   49 (313)
T PRK05854          9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRA   49 (313)
T ss_pred             CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578999999998 577999999999999999999988754

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=90.13  E-value=0.39  Score=39.66  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.+|.|.|. |.+|+.+++.+++.|++|+..+++.
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~  181 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA  181 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH
Confidence            4789999999 9999999999999999999887764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.08  E-value=0.38  Score=45.18  Aligned_cols=34  Identities=18%  Similarity=0.076  Sum_probs=31.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~  177 (189)
                      ++|+|||.|.+|..+|..+. .-|++|..||++..
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~  344 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ  344 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence            78999999999999999988 77999999998754

>PLN02827 Alcohol dehydrogenase-like

Probab=90.06  E-value=0.52  Score=40.56  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      -.|.+|.|+|.|.||...++.++++|++ |++.+++.
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~  228 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP  228 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            3589999999999999999999999995 88877543

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=90.04  E-value=0.52  Score=38.55  Aligned_cols=36  Identities=33%  Similarity=0.400  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      -.|.+|.|.|.|.+|+++++.+++.|++ |++.++..
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~  164 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRP  164 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            3589999999999999999999999999 88877654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK14851 hypothetical protein; Provisional

Probab=89.97  E-value=0.37  Score=45.04  Aligned_cols=39  Identities=23%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      .+..|++++|+|+|+|.+|..+|..|...|. ++..+|..
T Consensus        37 ~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D   76 (679)
T PRK14851         37 EQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD   76 (679)
T ss_pred             HHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            3568899999999999999999999998887 57777753

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=89.80  E-value=0.58  Score=40.60  Aligned_cols=42  Identities=24%  Similarity=0.287  Sum_probs=36.4

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .......+++|.|.|- |.||+.+++.|..-|.+|++.+|...
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~   95 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS   95 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence            3456778899999985 99999999999988999999998764

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.72  E-value=0.54  Score=41.26  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+.|+++.|.|- |.||+++|+.+...|++|+..++..
T Consensus       206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~  244 (450)
T PRK08261        206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA  244 (450)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4567999999997 9999999999999999999998753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=89.57  E-value=0.62  Score=41.46  Aligned_cols=37  Identities=30%  Similarity=0.368  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.+++|.|||-|.+|-..|..|+..|.+|..|++...
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~  175 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  175 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            4789999999999999999999999999999987653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02602 lactate dehydrogenase

Probab=89.49  E-value=0.52  Score=40.55  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCCCCccc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSWASHSQ  181 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~~~  181 (189)
                      ++|+|||.|+||..+|-.+...|.  ++..+|.......+
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g   77 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRG   77 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhH
Confidence            699999999999999998875454  79999987654443

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=89.37  E-value=0.54  Score=38.69  Aligned_cols=56  Identities=25%  Similarity=0.368  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccC----CC-------EEEEEcCCC
Q 044056          117 SCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPF----GV-------KIIAAKRSW  176 (189)
Q Consensus       117 ~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~af----G~-------~V~~~~r~~  176 (189)
                      -+|=-+++.+|+..|-    .+..|.+.++.|+|.|..|-.+|+.+...    |+       +++.+|+.+
T Consensus         3 GTaaV~lAgll~Al~~----~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G   69 (255)
T PF03949_consen    3 GTAAVVLAGLLNALRV----TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG   69 (255)
T ss_dssp             HHHHHHHHHHHHHHHH----HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred             hhHHHHHHHHHHHHHH----hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence            3566788999999985    67889999999999999999999999877    88       488888863

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd08293 PTGR2 Prostaglandin reductase

Probab=89.34  E-value=0.61  Score=39.01  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=31.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          143 GKTVFISGF-GNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~-G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      |++|.|.|. |.+|+.+.+.++++|+ +|++.+++..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~  191 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE  191 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence            489999998 9999999999999999 7999877643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK07340 ornithine cyclodeaminase; Validated

Probab=89.34  E-value=0.71  Score=38.81  Aligned_cols=38  Identities=16%  Similarity=0.131  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~  178 (189)
                      ...++++|+|.|.+|+..++.+. .++. +|..|+|+..+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~  162 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS  162 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH
Confidence            35789999999999999999986 4775 69999998643

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=89.29  E-value=0.68  Score=40.56  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++|.|||-|.+|-++|..++.+|.+|..+.+...
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~  191 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST  191 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            57999999999999999999999999999987643

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=89.23  E-value=0.65  Score=38.40  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=31.7

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|.+|.|.| .|.+|+.+++.++++|++|++.+++.
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~  178 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD  178 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 69999999999999999999887654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=89.23  E-value=0.61  Score=43.19  Aligned_cols=37  Identities=24%  Similarity=0.220  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++|.|||-|..|...|..|...|.+|..|++...
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            4699999999999999999999999999999997754

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=89.17  E-value=0.68  Score=39.57  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ..|.+|.|.|.|.+|+.+++.++++|. +|++.++..
T Consensus       175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~  211 (375)
T cd08282         175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVP  211 (375)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            358999999999999999999999997 798887653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.07  E-value=0.66  Score=41.85  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ....++|-|||.|--|-+.|+-|+.||++|+.+.-+.+
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR   49 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR   49 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence            34568999999999999999999999999998875543

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=89.03  E-value=0.72  Score=38.82  Aligned_cols=36  Identities=33%  Similarity=0.419  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      -.|++|.|.|.|.+|+.+++.++++|+ +|++.+++.
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~  207 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE  207 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            358999999999999999999999999 788887654

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=88.96  E-value=0.83  Score=38.18  Aligned_cols=41  Identities=27%  Similarity=0.343  Sum_probs=36.4

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .....|+++.|+|.|..+++++.-|...|+ +|..++|+...
T Consensus       121 ~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~r  162 (283)
T COG0169         121 PVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRER  162 (283)
T ss_pred             CcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            356689999999999999999999999996 79999997654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.89  E-value=0.55  Score=41.00  Aligned_cols=39  Identities=28%  Similarity=0.436  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcCC----------HHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          141 LLGKTVFISGFG----------NIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       141 l~gktvGIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      |.||||||+|+-          .-...++++|+..|++|.+|||-..+.
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~  356 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMEN  356 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHH
Confidence            999999999984          567889999999999999999976543

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=88.79  E-value=0.73  Score=39.49  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      .-.|.+|.|.|.|.+|..+++.+++.|. +|++.+++.
T Consensus       188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~  225 (373)
T cd08299         188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINK  225 (373)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            3448899999999999999999999999 799988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=88.74  E-value=0.94  Score=34.64  Aligned_cols=40  Identities=30%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...++.||++.|||-+. +|+.+|.+|..-|+.|...+.+.
T Consensus        30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T   70 (160)
T PF02882_consen   30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT   70 (160)
T ss_dssp             TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred             cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence            45689999999999996 99999999999999999887664

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=88.73  E-value=0.83  Score=42.66  Aligned_cols=40  Identities=33%  Similarity=0.511  Sum_probs=35.5

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.+|++.|.|- |.||+++|++|..-|++|+..+++..
T Consensus       409 ~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~  449 (676)
T TIGR02632       409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLE  449 (676)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            45788999999986 89999999999999999999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=88.67  E-value=0.68  Score=43.01  Aligned_cols=37  Identities=27%  Similarity=0.202  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.+++|.|||.|..|...|..|...|.+|..+++...
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~  227 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ  227 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4689999999999999999999999999999998654

>PRK06128 oxidoreductase; Provisional

Probab=88.64  E-value=0.7  Score=38.21  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .+.||++.|.|- |.||+++|+.+..-|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            578999999985 899999999999999999876654

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.58  E-value=0.71  Score=38.50  Aligned_cols=54  Identities=13%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.-++.++=.        .+.++.|+++.|+|.+ ..|+.+|.++..+|++|....++.+
T Consensus       133 PcTp~av~~ll~~--------~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~  187 (279)
T PRK14178        133 PCTPNGIMTLLHE--------YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE  187 (279)
T ss_pred             CCCHHHHHHHHHH--------cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChh
Confidence            4455555544432        4668999999999999 9999999999999999888776543

>PLN02427 UDP-apiose/xylose synthase

Probab=88.52  E-value=0.84  Score=39.19  Aligned_cols=40  Identities=25%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccC-CCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPF-GVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~  176 (189)
                      .+..+..++|.|.| .|-||+.+++.|..- |.+|++++++.
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~   49 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN   49 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence            45667778999999 699999999999876 58999999764

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=88.52  E-value=0.85  Score=39.97  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcC-----------------CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          139 ETLLGKTVFISGF-----------------GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~-----------------G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .++.||++.|-|-                 |.+|.++|+.+...|++|+++++..
T Consensus       184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~  238 (399)
T PRK05579        184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV  238 (399)
T ss_pred             cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence            4689999999987                 8899999999999999999998764

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=88.36  E-value=1.6  Score=38.47  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcC----------CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF----------GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +..+.|++|+|+|+          ..=+..+++.|..-|.+|.+|||...
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~  358 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVD  358 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCC
Confidence            45689999999999          56789999999999999999999843

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=88.25  E-value=0.89  Score=40.29  Aligned_cols=42  Identities=33%  Similarity=0.513  Sum_probs=37.7

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ....+++||+|+|||.|+-|-.++.-|..-|.+|..+-|++.
T Consensus       168 ~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         168 PNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             CCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            345699999999999999999999999999999999988764

>PRK08618 ornithine cyclodeaminase; Validated

Probab=88.20  E-value=0.6  Score=39.57  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHH-ccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRL-RPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l-~afG~-~V~~~~r~~~~  178 (189)
                      ..++++|+|.|.+|+..++.+ ...+. +|..|+|++..
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~  164 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK  164 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH
Confidence            478999999999999988776 45676 59999998554

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.07  E-value=0.89  Score=37.99  Aligned_cols=34  Identities=29%  Similarity=0.528  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .|.+|.|.|. |.+|+.+++.+++.|++|++.++.
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~  211 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA  211 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc
Confidence            5899999999 999999999999999999887654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=88.06  E-value=0.83  Score=40.60  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++|.|||-|.+|-++|..++.+|.+|..+++...
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  217 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA  217 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence            58999999999999999999999999999987643

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=87.92  E-value=1.6  Score=38.11  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcC----------CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGF----------GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.+++|+|+|+          ..-...+++.|...|++|.+|||...+
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~  358 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPE  358 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCCh
Confidence            689999999998          567889999999999999999998654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02572 UDP-sulfoquinovose synthase

Probab=87.91  E-value=0.99  Score=39.89  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=34.8

Q ss_pred             CCCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          136 PTGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       136 ~~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .....+.+++|.|.| .|-||+.+++.|..-|.+|+++|+.
T Consensus        40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~   80 (442)
T PLN02572         40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL   80 (442)
T ss_pred             CCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            345678899999998 5999999999999999999998753

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=87.86  E-value=0.92  Score=38.17  Aligned_cols=36  Identities=33%  Similarity=0.379  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      -.|++|.|.|.|.||+.+++.++..|.+ |+..++..
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~  201 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP  201 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            3589999999999999999999999995 88887653

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=87.84  E-value=3.4  Score=34.97  Aligned_cols=72  Identities=13%  Similarity=0.099  Sum_probs=50.3

Q ss_pred             HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCC-CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEc
Q 044056           96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGE-TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus        96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~-~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      .+....|+|.|.-+....-.+++++     ++.+.++    .+. .+.|++|+++|- +++.+..+..+..|||+|....
T Consensus       114 ~a~~~~vPVINag~~~~HPtQaL~D-----l~Ti~e~----~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~  184 (311)
T PRK14804        114 MKNGSQVPVINGCDNMFHPCQSLAD-----IMTIALD----SPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVT  184 (311)
T ss_pred             HHHHCCCCEEECCCCCCChHHHHHH-----HHHHHHH----hCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEC
Confidence            3444679999986542112234444     2222232    232 589999999997 7899999999999999999999


Q ss_pred             CCC
Q 044056          174 RSW  176 (189)
Q Consensus       174 r~~  176 (189)
                      |..
T Consensus       185 P~~  187 (311)
T PRK14804        185 PIA  187 (311)
T ss_pred             CCC
Confidence            865

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=87.76  E-value=0.8  Score=37.88  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      -.|.+|.|+|. |.+|+.+++.+++.|.+|++.++
T Consensus       161 ~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~  195 (325)
T cd08264         161 GPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR  195 (325)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH
Confidence            45899999998 99999999999999999988764

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=87.63  E-value=0.63  Score=38.78  Aligned_cols=36  Identities=33%  Similarity=0.435  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~  176 (189)
                      ..|++|.|.|-|.+|+.+++.++..| .+|+..+++.
T Consensus       166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~  202 (340)
T cd05284         166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSE  202 (340)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            34899999999999999999999999 8999887754

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=87.54  E-value=0.95  Score=40.24  Aligned_cols=38  Identities=29%  Similarity=0.348  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .-.+++|.|||-|..|-..|..|...|.+|..+++...
T Consensus       140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~  177 (471)
T PRK12810        140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR  177 (471)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            34689999999999999999999999999999998643

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=87.49  E-value=0.57  Score=38.84  Aligned_cols=36  Identities=22%  Similarity=0.240  Sum_probs=32.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~  178 (189)
                      ++++.|+|.|..+++++-.|...|++ |..++|+.++
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~  158 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKT  158 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            57999999999999999999999985 9999998643

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=87.40  E-value=0.76  Score=37.95  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             CCCC-EEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGK-TVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gk-tvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..|. +|.|.|. |.+|+.+++.++++|++|++..++.
T Consensus       143 ~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~  180 (323)
T TIGR02823       143 TPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKA  180 (323)
T ss_pred             CCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            3466 9999998 9999999999999999998876544

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=87.37  E-value=1  Score=39.86  Aligned_cols=38  Identities=21%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+++|.|||-|..|-+.|..|...|.+|..+++...
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~  167 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK  167 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            45689999999999999999999999999999998643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=87.35  E-value=0.8  Score=37.67  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.+|.|.|. |.+|+.+++.+++.|++|+..+++.
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~  181 (325)
T cd05280         146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKE  181 (325)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3579999998 9999999999999999999888764

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=87.34  E-value=0.57  Score=40.16  Aligned_cols=44  Identities=25%  Similarity=0.361  Sum_probs=37.4

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCcc
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASHS  180 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~  180 (189)
                      ...--.|.|+.|+|+|.+|-+..+.++.-|+ +|++.|..+.+.+
T Consensus       180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~  224 (366)
T COG1062         180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLE  224 (366)
T ss_pred             cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHH
Confidence            3455569999999999999999999999998 5999998766543

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=87.31  E-value=0.96  Score=39.83  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=32.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++|.|||-|.||-++|..+..+|.+|..+++...
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~  209 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR  209 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            68999999999999999999999999999988654

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.29  E-value=0.73  Score=37.60  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|.++.|.|. |.+|+.+++.++++|++|++.+++.
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~  167 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSP  167 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4899999999 9999999999999999999988754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=87.28  E-value=1  Score=38.96  Aligned_cols=36  Identities=28%  Similarity=0.345  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++|.|||-|.+|-++|..|+.+|.+|..+.+...
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  178 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT  178 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            368999999999999999999999999998887553

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=87.24  E-value=0.77  Score=38.94  Aligned_cols=37  Identities=19%  Similarity=-0.019  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~  178 (189)
                      ..++++|+|.|..|+..++.+. .++. +|..|+|+..+
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~  166 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK  166 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH
Confidence            4589999999999999999996 5785 59999998654

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=87.19  E-value=1.1  Score=37.18  Aligned_cols=37  Identities=24%  Similarity=0.210  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...|.++.|.|.|.+|+.+++.+++.|.+|++.+++.
T Consensus       165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~  201 (329)
T cd08298         165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSG  201 (329)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCCh
Confidence            3457899999999999999999999999999887654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=87.15  E-value=0.99  Score=39.67  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++++.|||-|.||-++|..++.+|.+|..+.+...
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            58999999999999999999999999999987653

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=87.13  E-value=0.76  Score=37.85  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|.+|.|.|. |.+|+++++.++++|++|+...++.
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~  174 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD  174 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH
Confidence            5799999986 9999999999999999998886654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=87.11  E-value=1.1  Score=39.73  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...|++|.|||-|.+|-.+|+.+..+|.+|..+.+..
T Consensus       269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       269 VYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            3468999999999999999999999999988877653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=87.11  E-value=3.5  Score=35.26  Aligned_cols=73  Identities=14%  Similarity=0.102  Sum_probs=49.6

Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEE
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~  172 (189)
                      +.+...+|+|.|.-+.   +..++--++  =++.+.++    .+..+.|++|++||=+  ++.+..+..+..|||+|...
T Consensus       117 ~~a~~~~vPVINa~~~---~~HPtQaL~--Dl~Ti~e~----~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~  187 (334)
T PRK01713        117 ELAEYAGVPVFNGLTD---EFHPTQMLA--DVLTMIEN----CDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRIC  187 (334)
T ss_pred             HHHHhCCCCEEECCCC---CCChHHHHH--HHHHHHHH----cCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEE
Confidence            3445568999998554   333332222  22223232    2335889999999986  67888889999999999999


Q ss_pred             cCCC
Q 044056          173 KRSW  176 (189)
Q Consensus       173 ~r~~  176 (189)
                      .|..
T Consensus       188 ~P~~  191 (334)
T PRK01713        188 APKA  191 (334)
T ss_pred             CCch
Confidence            8753

>PRK14852 hypothetical protein; Provisional

Probab=87.07  E-value=0.67  Score=44.91  Aligned_cols=38  Identities=26%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      +..|++++|+|+|+|.+|..+|+.|...|. ++...|..
T Consensus       327 Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D  365 (989)
T PRK14852        327 QRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD  365 (989)
T ss_pred             HHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            468999999999999999999999998887 47666653

>PRK06116 glutathione reductase; Validated

Probab=87.04  E-value=1  Score=39.56  Aligned_cols=35  Identities=34%  Similarity=0.313  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++|.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  201 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA  201 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            58999999999999999999999999999987654

>PRK06484 short chain dehydrogenase; Validated

Probab=87.00  E-value=1.7  Score=38.76  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~  304 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAE  304 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45789999997 678999999999999999999998643

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=86.95  E-value=1.1  Score=37.28  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      ...|++|.|.|.|.+|+.+++.++.+|+ +|++.++.
T Consensus       165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~  201 (344)
T cd08284         165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPV  201 (344)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCC
Confidence            3468999999999999999999999997 78887544

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=86.92  E-value=1.1  Score=38.02  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      -.|++|.|.|.|.+|+.+++.++++|. +|++.+++.
T Consensus       185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~  221 (365)
T cd08278         185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVD  221 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            358999999999999999999999999 588887654

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=86.92  E-value=1.1  Score=37.05  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=32.1

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.| .|.+|+.+++.++..|.+|++.+++.
T Consensus       144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~  180 (329)
T cd05288         144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD  180 (329)
T ss_pred             CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3579999999 69999999999999999999988654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=86.88  E-value=1.1  Score=38.51  Aligned_cols=36  Identities=28%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.|. |.||+.+++.++++|+++++.+++.
T Consensus       192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~  228 (393)
T cd08246         192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSE  228 (393)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            45789999997 9999999999999999988887653

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PTZ00058 glutathione reductase; Provisional

Probab=86.87  E-value=0.91  Score=41.53  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      +++|.|||-|.||-++|..+..+|.+|..+.+..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~  270 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN  270 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence            6899999999999999999999999999998764

>PRK13984 putative oxidoreductase; Provisional

Probab=86.86  E-value=1.1  Score=41.15  Aligned_cols=37  Identities=24%  Similarity=0.220  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.+++|.|||.|..|...|..|+..|.+|..+++...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~  317 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK  317 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4689999999999999999999999999999987653

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=86.85  E-value=0.74  Score=38.41  Aligned_cols=36  Identities=33%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|.+|.|.|.|.+|+.+++.++.+|. +|++.+++..
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~  201 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADA  201 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            68999999999999999999999999 7888877543

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=86.82  E-value=5.2  Score=36.56  Aligned_cols=92  Identities=11%  Similarity=0.059  Sum_probs=66.9

Q ss_pred             hcCCCCeEEEEcCCCCCc-CChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC
Q 044056           74 TRANPMNLIIRFRVGLEG-VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG  152 (189)
Q Consensus        74 ~~~p~Lk~I~~~~aG~d~-id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G  152 (189)
                      ..+|+. +|+.==-+..+ +.+-.-.+..|++.|.-=      +.+|--+++.+|+..|-    .+..|.+.++.|+|.|
T Consensus       238 ~~~P~~-~Iq~EDf~~~naf~iL~kyr~~i~~FnDDi------QGTaaV~lAgll~Alr~----~g~~l~d~riv~~GAG  306 (559)
T PTZ00317        238 SRWPNA-VVQFEDFSNNHCFDLLERYQNKYRCFNDDI------QGTGAVIAAGFLNALKL----SGVPPEEQRIVFFGAG  306 (559)
T ss_pred             HhCCCe-EEehhhcCCccHHHHHHHhccCCCEecccc------hhHHHHHHHHHHHHHHH----hCCChhhcEEEEECCC
Confidence            445663 66554444444 222222334588887522      56788999999999994    6788999999999999


Q ss_pred             HHHHHHHHHHcc----CCC-------EEEEEcCCC
Q 044056          153 NIGVELAKRLRP----FGV-------KIIAAKRSW  176 (189)
Q Consensus       153 ~IG~~vA~~l~a----fG~-------~V~~~~r~~  176 (189)
                      .-|-.+|+.+..    -|.       +++.+|+.+
T Consensus       307 sAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G  341 (559)
T PTZ00317        307 SAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG  341 (559)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence            999999998863    577       788888764

>PLN02852 ferredoxin-NADP+ reductase

Probab=86.80  E-value=1.4  Score=39.60  Aligned_cols=43  Identities=21%  Similarity=0.156  Sum_probs=36.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHcc--CCCEEEEEcCCCCCcc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRP--FGVKIIAAKRSWASHS  180 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~a--fG~~V~~~~r~~~~~~  180 (189)
                      .....+++|.|||-|.-|-..|..|..  .|.+|..|++.+.+..
T Consensus        21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG   65 (491)
T PLN02852         21 SSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG   65 (491)
T ss_pred             CCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence            344568999999999999999999964  8999999999876543

>PRK12831 putative oxidoreductase; Provisional

Probab=86.74  E-value=1.1  Score=39.85  Aligned_cols=37  Identities=24%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...|++|.|||-|.+|-.+|+.+..+|.+|....|..
T Consensus       278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        278 IKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             ccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            3568999999999999999999999999988776643

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.73  E-value=1.3  Score=37.11  Aligned_cols=54  Identities=19%  Similarity=0.119  Sum_probs=42.5

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCC
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...++.-++.++=.        .+.++.||++.|||-| -+|+.+|.+|..-|++|.......
T Consensus       137 ~PcTp~avi~lL~~--------~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t  191 (285)
T PRK14191        137 VPATPMGVMRLLKH--------YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT  191 (285)
T ss_pred             CCCcHHHHHHHHHH--------hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc
Confidence            34556655555432        4668999999999999 999999999999999998876543

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=86.72  E-value=1.2  Score=40.38  Aligned_cols=41  Identities=29%  Similarity=0.403  Sum_probs=34.1

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .......||+|.|||.|+-|..||.-+....-+|+...|++
T Consensus       176 r~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  176 RDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             -TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             cChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            34567899999999999999999999998888888777764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12831 putative oxidoreductase; Provisional

Probab=86.68  E-value=1.2  Score=39.64  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .-.++.|.|||-|..|-..|..|+..|.+|..+++..
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~  173 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH  173 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            4578999999999999999999999999999998754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=86.67  E-value=2  Score=38.83  Aligned_cols=45  Identities=18%  Similarity=0.022  Sum_probs=36.7

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHH-ccCCCEEEEEcCCCCCcccc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIAAKRSWASHSQV  182 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~~~~  182 (189)
                      ......++|.|||-|.-|-..|+.+ +..|.+|..|++.+.+-..+
T Consensus        34 ~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLv   79 (506)
T PTZ00188         34 TNEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLI   79 (506)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEE
Confidence            3445689999999999999999964 56799999999988775433

>PRK06370 mercuric reductase; Validated

Probab=86.66  E-value=1.1  Score=39.62  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=32.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++|.|||-|.+|-++|..++.+|.+|..+++...
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  205 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR  205 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            68999999999999999999999999999987654

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=86.62  E-value=1.3  Score=28.62  Aligned_cols=31  Identities=23%  Similarity=0.218  Sum_probs=27.3

Q ss_pred             EEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          148 ISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       148 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |||-|--|-..|..|+.-|.+|..+++....
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence            8999999999999999889999999987544

...

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=86.59  E-value=1.1  Score=36.30  Aligned_cols=36  Identities=31%  Similarity=0.521  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..|.+|.|.|. |.+|+.+++.++..|++|+..+++.
T Consensus       138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~  174 (323)
T cd08241         138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSE  174 (323)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCH
Confidence            35799999998 9999999999999999999887754

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05281 TDH Threonine dehydrogenase

Probab=86.54  E-value=1.3  Score=37.17  Aligned_cols=35  Identities=31%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      -.|.+|.|.|.|.+|+.+++.++++|+ +|++.+++
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~  197 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPN  197 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            368999999999999999999999999 68887544

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=86.49  E-value=1.3  Score=37.00  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ..|++|.|.|.|.+|+.+++.++.+|++|+...++
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s  192 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDID  192 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCC
Confidence            45889999999999999999999999999888665

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK07846 mycothione reductase; Reviewed

Probab=86.48  E-value=1.2  Score=39.48  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=32.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~  200 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR  200 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            58999999999999999999999999999988654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=86.47  E-value=1.2  Score=37.81  Aligned_cols=37  Identities=27%  Similarity=0.291  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++|.|||-|..|-+.|..|...|.+|..+++.+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4789999999999999999999999999999987544

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=86.43  E-value=1.1  Score=39.46  Aligned_cols=36  Identities=36%  Similarity=0.501  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++++.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  203 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR  203 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            358999999999999999999999999999987654

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=86.41  E-value=1.3  Score=35.82  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=32.3

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...|++|.|.| .|.+|+.+++.++++|.+|+..+++.
T Consensus       134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~  171 (320)
T cd05286         134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSE  171 (320)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            34579999999 69999999999999999999887653

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=86.40  E-value=1.3  Score=39.04  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.+|-++|..++.+|.+|..+.+...
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  206 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR  206 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            48999999999999999999999999999987654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=86.35  E-value=1.4  Score=39.18  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++|.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~  208 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR  208 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            68999999999999999999999999998877554

>PLN02206 UDP-glucuronate decarboxylase

Probab=86.32  E-value=1.3  Score=39.18  Aligned_cols=39  Identities=28%  Similarity=0.389  Sum_probs=33.7

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .+..-.+++|.|.| .|-||+.+++.|..-|.+|++.++.
T Consensus       113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~  152 (442)
T PLN02206        113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF  152 (442)
T ss_pred             cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence            44455679999999 6999999999999999999999864

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=86.30  E-value=1.3  Score=37.13  Aligned_cols=37  Identities=27%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~  176 (189)
                      .-.|.+|.|.|.|.+|+.++++++.+| .+|+++++..
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~  201 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDD  201 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            345899999999999999999999999 7888887643

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=86.20  E-value=1.2  Score=39.25  Aligned_cols=35  Identities=37%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  200 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER  200 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            58999999999999999999999999999887654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=86.20  E-value=1.3  Score=36.11  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.|. |.+|+.+++.+++.|++|+...++.
T Consensus       141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~  177 (320)
T cd08243         141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSP  177 (320)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            45799999997 9999999999999999999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK07877 hypothetical protein; Provisional

Probab=86.16  E-value=0.74  Score=43.36  Aligned_cols=47  Identities=21%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             HHHhcCC---CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCC
Q 044056          128 GLLRKHI---VPTGETLLGKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRS  175 (189)
Q Consensus       128 ~~~R~~~---~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~  175 (189)
                      .+.|+..   ...+..|++++|+|+|+| +|..+|..|..-|.  ++..+|.-
T Consensus        89 r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D  140 (722)
T PRK07877         89 RLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD  140 (722)
T ss_pred             HhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence            3345544   234568999999999999 99999999998884  78877754

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=86.12  E-value=1  Score=37.22  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH  179 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~  179 (189)
                      .+..|...+|.|+|+|.+|.++|+.|..-|. ++..+|...-+.
T Consensus        20 gQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~   63 (287)
T PTZ00245         20 TQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTD   63 (287)
T ss_pred             HHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccch
Confidence            3567889999999999999999999998888 477777654433

>PRK10083 putative oxidoreductase; Provisional

Probab=86.01  E-value=1.3  Score=36.99  Aligned_cols=36  Identities=28%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHcc-CCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRP-FGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~a-fG~~-V~~~~r~~  176 (189)
                      -.|.+|.|.|.|.+|+.+++.+++ +|++ |+..+++.
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~  196 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRID  196 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence            458899999999999999999996 7996 66676643

>TIGR03452 mycothione_red mycothione reductase

Probab=86.00  E-value=1.1  Score=39.50  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  203 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK  203 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            58999999999999999999999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=85.99  E-value=5.4  Score=34.16  Aligned_cols=94  Identities=12%  Similarity=0.031  Sum_probs=58.4

Q ss_pred             HHHHhcCCCCeEEEEcCCCCC------cCC-hhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCC-
Q 044056           70 SNVITRANPMNLIIRFRVGLE------GVD-IDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETL-  141 (189)
Q Consensus        70 ~~~l~~~p~Lk~I~~~~aG~d------~id-~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l-  141 (189)
                      ...++++..+=++=....|.+      +-. ...+...+++|.|..+. ..-.++.|+     ++.+.++    .+ .+ 
T Consensus        99 arvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~-~HPtQaLaD-----l~Ti~e~----~g-~~~  167 (335)
T PRK04523         99 ARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETI-THPCQELAH-----ALALQEH----FG-TTL  167 (335)
T ss_pred             HHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCC-CChHHHHHH-----HHHHHHH----hC-Ccc
Confidence            345666655544433445554      111 23344467999998553 212334444     3333343    22 36 


Q ss_pred             CCCEEEEEcCC-------HHHHHHHHHHccCCCEEEEEcC
Q 044056          142 LGKTVFISGFG-------NIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       142 ~gktvGIvG~G-------~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      .|++|+|++.|       ++.+..+..+..|||+|....|
T Consensus       168 ~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P  207 (335)
T PRK04523        168 RGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCP  207 (335)
T ss_pred             CCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECC
Confidence            79999887654       7888999999999999999998

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=85.93  E-value=1.3  Score=39.16  Aligned_cols=35  Identities=34%  Similarity=0.471  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++|.|||-|.+|-++|..++.+|.+|..+++...
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~  214 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR  214 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            58999999999999999999999999999987654

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=85.93  E-value=2.3  Score=38.90  Aligned_cols=151  Identities=20%  Similarity=0.169  Sum_probs=90.5

Q ss_pred             CCCcceEEEeCCCCCCchhHHHHHhhcccCceeee-Cch--h-HHhhcCCCeEEecCCCCCHHHHhcCC-CCeEEEEcCC
Q 044056           13 DKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLC-FFL--S-MHSLYASYGTSEQMIASDSNVITRAN-PMNLIIRFRV   87 (189)
Q Consensus        13 ~~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~--~-~~~~~~~advi~~~~~~~~~~l~~~p-~Lk~I~~~~a   87 (189)
                      .....++++++.-.. ...++++ +...++..... .++  . .-..+.+.- +.+... -.+++++.. ..-+|+-.++
T Consensus       113 ~~~~~r~lIiGAG~a-g~~l~r~-~~~~~~~~pV~fiDdd~~~~g~~i~Gv~-V~g~~~-i~~~v~~~~~~~iiiAips~  188 (588)
T COG1086         113 KDNRIRLLIIGAGSA-GDLLLRA-LRRDPEYTPVAFLDDDPDLTGMKIRGVP-VLGRIE-IERVVEELGIQLILIAIPSA  188 (588)
T ss_pred             ccCCCceEEEcCchH-HHHHHHH-HHhCCCcceEEEECCChhhcCCEEecee-eechhH-HHHHHHHcCCceEEEecCCC
Confidence            344688899887533 3323333 33334432222 122  1 111222211 344334 455667663 4446666666


Q ss_pred             CCCc---CChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEc
Q 044056           88 GLEG---VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISG  150 (189)
Q Consensus        88 G~d~---id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG  150 (189)
                      .-+.   + +..+.+.|+.|--.|..     ..+.+     ...-.|++.              ......+.||||.|-|
T Consensus       189 ~~~~~~~i-~~~l~~~~~~v~~lP~~-----~~l~~-----~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTG  257 (588)
T COG1086         189 SQEERRRI-LLRLARTGIAVRILPQL-----TDLKD-----LNGQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTG  257 (588)
T ss_pred             CHHHHHHH-HHHHHhcCCcEEecCcH-----HHHHH-----hccccccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeC
Confidence            5443   3 67788899999988875     33444     333356665              1234578999999996


Q ss_pred             -CCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056          151 -FGNIGVELAKRLRPFGVK-IIAAKRSWAS  178 (189)
Q Consensus       151 -~G~IG~~vA~~l~afG~~-V~~~~r~~~~  178 (189)
                       .|.||+++.+.+-.++.+ ++.++++...
T Consensus       258 agGSiGsel~~qil~~~p~~i~l~~~~E~~  287 (588)
T COG1086         258 GGGSIGSELCRQILKFNPKEIILFSRDEYK  287 (588)
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEecCchHH
Confidence             579999999999999985 8888887554

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=85.90  E-value=4.3  Score=34.67  Aligned_cols=73  Identities=12%  Similarity=0.020  Sum_probs=50.1

Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEE
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~  172 (189)
                      ..+....|+|.|.-+.   +..++--++  =++.+.+++    ...+.|++|++||=+  ++.+..+..+..||++|...
T Consensus       116 ~~a~~s~vPVINa~~~---~~HPtQaL~--Dl~Ti~e~~----~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~  186 (332)
T PRK04284        116 TLAEYSGVPVWNGLTD---EDHPTQVLA--DFLTAKEHL----KKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLV  186 (332)
T ss_pred             HHHHhCCCCEEECCCC---CCChHHHHH--HHHHHHHHh----cCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEE
Confidence            3344567999997553   434433222  233333431    125889999999975  88999999999999999999


Q ss_pred             cCCC
Q 044056          173 KRSW  176 (189)
Q Consensus       173 ~r~~  176 (189)
                      .|..
T Consensus       187 ~P~~  190 (332)
T PRK04284        187 CPKE  190 (332)
T ss_pred             CCcc
Confidence            8863

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=85.87  E-value=1.3  Score=39.05  Aligned_cols=38  Identities=26%  Similarity=0.286  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .-.+++|.|||-|..|.+.|..|...|.+|..+++...
T Consensus       137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~  174 (457)
T PRK11749        137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK  174 (457)
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            35679999999999999999999999999999998653

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=85.85  E-value=1.3  Score=37.05  Aligned_cols=36  Identities=31%  Similarity=0.408  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      -.|.+|.|.|-|.+|+.+++.+++.|.+ |+..+++.
T Consensus       167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~  203 (345)
T cd08287         167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHE  203 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            4589999999999999999999999996 77777653

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=85.78  E-value=0.78  Score=38.43  Aligned_cols=48  Identities=29%  Similarity=0.361  Sum_probs=35.3

Q ss_pred             HHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcC
Q 044056          127 LGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKR  174 (189)
Q Consensus       127 L~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r  174 (189)
                      +++.|.-....-..++.++|.|||.|.+|+-.|.+|..-|. +.+.||-
T Consensus        66 MALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDY  114 (422)
T KOG2336|consen   66 MALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDY  114 (422)
T ss_pred             HHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeec
Confidence            34444322222346788999999999999999999998886 6777764

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=85.78  E-value=0.83  Score=38.09  Aligned_cols=39  Identities=31%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      ..+.+|+..|++|+|+ |.||..+|+-+.+-+++....-|
T Consensus       160 ~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r  199 (351)
T COG5322         160 QLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLR  199 (351)
T ss_pred             HhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecc
Confidence            4789999999999996 99999999999999988766553

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=85.66  E-value=1.3  Score=36.44  Aligned_cols=36  Identities=31%  Similarity=0.575  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.+.++.|.|- |.+|+++++.+++.|.+|+...++.
T Consensus       161 ~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~  197 (332)
T cd08259         161 KKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP  197 (332)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            45789999996 9999999999999999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=85.56  E-value=1.4  Score=37.97  Aligned_cols=36  Identities=28%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.|. |.+|+.+++.++++|++|++.+++.
T Consensus       188 ~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~  224 (398)
T TIGR01751       188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSP  224 (398)
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            45799999998 9999999999999999988877653

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=85.43  E-value=6.7  Score=33.91  Aligned_cols=69  Identities=14%  Similarity=0.074  Sum_probs=44.6

Q ss_pred             CeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--------HHHHHHHHHHccCCCEEEEE
Q 044056          101 AIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--------NIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus       101 gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--------~IG~~vA~~l~afG~~V~~~  172 (189)
                      .|||.|.-+.   ...++--+  +=++.+..++.  ....|.|++|.|+|.|        ++.+..+..+..|||+|...
T Consensus       135 ~vPVINa~~~---~~HPtQaL--aDl~Ti~e~~G--~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~  207 (357)
T TIGR03316       135 RPPLVNLQCD---IDHPTQAM--ADIMTLQEKFG--GIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLA  207 (357)
T ss_pred             CCCEEECCCC---CCCchHHH--HHHHHHHHHhC--CccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEE
Confidence            6999998664   33333222  22333333321  1124889999999853        44567788889999999999


Q ss_pred             cCCC
Q 044056          173 KRSW  176 (189)
Q Consensus       173 ~r~~  176 (189)
                      .|..
T Consensus       208 ~P~~  211 (357)
T TIGR03316       208 HPEG  211 (357)
T ss_pred             CCCc
Confidence            9864

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=85.37  E-value=0.96  Score=37.57  Aligned_cols=36  Identities=31%  Similarity=0.549  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.+.+|.|.|. |.+|+.+++.+++.|++|++.+++.
T Consensus       161 ~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~  197 (334)
T PRK13771        161 KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSE  197 (334)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35789999999 9999999999999999999887754

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=85.35  E-value=1.5  Score=36.57  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=30.6

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .|.+|.|.| .|.+|+.+++.++++|++|++..+.
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~  196 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST  196 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc
Confidence            589999999 5999999999999999998887653

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=85.32  E-value=1.4  Score=37.97  Aligned_cols=36  Identities=31%  Similarity=0.440  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      -.|.+|.|+|.|.+|+.+++.+++.|. +|++.+++.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~  219 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP  219 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            358899999999999999999999998 599988764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=85.32  E-value=1.6  Score=38.12  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEcC-----------------CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          139 ETLLGKTVFISGF-----------------GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~-----------------G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .++.||++.|-|-                 |.+|.++|+.+...|++|+++.+..
T Consensus       181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~  235 (390)
T TIGR00521       181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV  235 (390)
T ss_pred             cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence            4589999999987                 5799999999999999999987654

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=85.32  E-value=1.6  Score=37.49  Aligned_cols=36  Identities=31%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      -.|.+|.|.|.|.+|+.+++.++++|. +|++.++..
T Consensus       202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~  238 (384)
T cd08265         202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISE  238 (384)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            357899999999999999999999999 788887643

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK06046 alanine dehydrogenase; Validated

Probab=85.31  E-value=1.3  Score=37.54  Aligned_cols=36  Identities=28%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHc-cCCCE-EEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLR-PFGVK-IIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~-afG~~-V~~~~r~~~~  178 (189)
                      -++|||+|+|.+|+..++.+. .++.+ |..|||+...
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~  166 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSS  166 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHH
Confidence            479999999999999999886 56765 7779998643

>PLN00106 malate dehydrogenase

Probab=85.31  E-value=1.9  Score=36.76  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=29.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHcc--CCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRP--FGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~a--fG~~V~~~~r~~  176 (189)
                      ..++|+|+|. |+||..+|-.|.-  +.-++..+|...
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            3479999999 9999999999974  444899999866

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=85.25  E-value=1.7  Score=42.40  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ....||+|.|||.|.-|-..|..|...|.+|..|+..
T Consensus       379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            4468999999999999999999999999999999975

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=85.24  E-value=2.6  Score=38.62  Aligned_cols=68  Identities=19%  Similarity=0.228  Sum_probs=56.1

Q ss_pred             hCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHcc-----CCC------
Q 044056           99 NCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRP-----FGV------  167 (189)
Q Consensus        99 ~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~a-----fG~------  167 (189)
                      +..|++.|.-=      +.+|--+++.+|+..|-    .+..|.+.+|.|+|.|.-|-.+|+.+..     .|+      
T Consensus       287 r~~i~~FnDDi------QGTaaV~lAgll~A~r~----~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~  356 (581)
T PLN03129        287 RTTHLCFNDDI------QGTAAVALAGLLAALRA----TGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEAR  356 (581)
T ss_pred             ccCCCEecccc------chHHHHHHHHHHHHHHH----hCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhc
Confidence            45788877522      56788899999999994    6789999999999999999999999876     466      


Q ss_pred             -EEEEEcCCC
Q 044056          168 -KIIAAKRSW  176 (189)
Q Consensus       168 -~V~~~~r~~  176 (189)
                       +++.+|+.+
T Consensus       357 ~~i~~vD~~G  366 (581)
T PLN03129        357 KRIWLVDSKG  366 (581)
T ss_pred             CcEEEEcCCC
Confidence             788888764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=85.23  E-value=1.7  Score=38.60  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..++.+|.+|..+.+...
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~  211 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR  211 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            47999999999999999999999999999987553

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=85.22  E-value=1.4  Score=38.24  Aligned_cols=35  Identities=26%  Similarity=0.473  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEE-EcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIA-AKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~-~~r~  175 (189)
                      -.|++|.|.|.|.||..+++.++.+|++++. .++.
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~  219 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLN  219 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence            3589999999999999999999999998544 4553

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN00016 RNA-binding protein; Provisional

Probab=85.20  E-value=1.1  Score=38.52  Aligned_cols=41  Identities=29%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEE-----cCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFIS-----GFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIv-----G~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ......++|.|+     |.|.||+.+++.|..-|.+|++.+|....
T Consensus        47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             hcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            345566899999     57999999999999889999999987643

>PRK07201 short chain dehydrogenase; Provisional

Probab=85.08  E-value=1.5  Score=40.30  Aligned_cols=38  Identities=29%  Similarity=0.452  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+.||++.|.|- |.||+++++.+..-|++|+..+|+..
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~  406 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGE  406 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            678999999985 88999999999999999999998754

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=85.08  E-value=1.4  Score=36.56  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=31.6

Q ss_pred             CCEEEEEc-CCHHHHHHHHHHccCC-CEEEEEcCCCC
Q 044056          143 GKTVFISG-FGNIGVELAKRLRPFG-VKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG-~G~IG~~vA~~l~afG-~~V~~~~r~~~  177 (189)
                      |.+|.|.| .|.+|+.+++.+++.| ++|++.+++..
T Consensus       150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~  186 (336)
T cd08252         150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPE  186 (336)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChh
Confidence            78999999 5999999999999999 99999987643

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=85.00  E-value=1.6  Score=39.12  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.+++|.|||-|..|...|..|...|.+|..+++..
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            357899999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=84.97  E-value=1.6  Score=36.65  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      .|.+|.|.|.|.+|.++++.++++|+ +|++.+++
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~  209 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDID  209 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            68999999999999999999999999 67777654

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=84.93  E-value=1.7  Score=35.24  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+.++.|.|. |.||+.+++.+++.|++|+..+++.
T Consensus       138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~  174 (323)
T cd05276         138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSE  174 (323)
T ss_pred             CCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCH
Confidence            35789999995 8999999999999999999887753

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=84.92  E-value=1.2  Score=36.48  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..|.+|.|.|. |.+|+++++.+++.|.+|++..++.
T Consensus       137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~  173 (323)
T cd05282         137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD  173 (323)
T ss_pred             CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh
Confidence            46899999987 8999999999999999999887654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=84.90  E-value=1.5  Score=36.69  Aligned_cols=38  Identities=26%  Similarity=0.391  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      ....|++|.|.|.|.+|..+++.++.+|.+ |+..+++.
T Consensus       159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~  197 (343)
T cd05285         159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDP  197 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            345589999999999999999999999998 88776653

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=84.84  E-value=5  Score=34.32  Aligned_cols=72  Identities=14%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEE
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~  172 (189)
                      +.+...+|+|.|.-+.   +..++--++  =++.+.+++     ..+.|+||++||-+  ++.+..+..+..|||+|...
T Consensus       117 ~~a~~~~vPVINa~~~---~~HPtQaLa--Dl~Ti~e~~-----g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~  186 (331)
T PRK02102        117 ELAKYSGVPVWNGLTD---EWHPTQMLA--DFMTMKEHF-----GPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRIC  186 (331)
T ss_pred             HHHHhCCCCEEECCCC---CCChHHHHH--HHHHHHHHh-----CCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEE
Confidence            3344567999998553   333333222  223333321     25889999999997  88999999999999999999


Q ss_pred             cCCC
Q 044056          173 KRSW  176 (189)
Q Consensus       173 ~r~~  176 (189)
                      .|..
T Consensus       187 ~P~~  190 (331)
T PRK02102        187 APKE  190 (331)
T ss_pred             CCcc
Confidence            8754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.79  E-value=1.6  Score=38.76  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  208 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            47999999999999999999999999999877653

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.78  E-value=1.7  Score=38.43  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..++.+|.+|..+.+...
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  206 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR  206 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            57999999999999999999999999988876543

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=84.73  E-value=1.2  Score=36.78  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|.+|.|.| -|.+|+.+++.++.+|.+|+..+++.
T Consensus       138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~  174 (329)
T cd08250         138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSD  174 (329)
T ss_pred             CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcH
Confidence            4589999999 69999999999999999999987654

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PLN02507 glutathione reductase

Probab=84.62  E-value=1.6  Score=39.14  Aligned_cols=36  Identities=28%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++|.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~  238 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP  238 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence            589999999999999999999999999998876543

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=84.61  E-value=1.1  Score=37.91  Aligned_cols=36  Identities=31%  Similarity=0.378  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      -.|.+|.|.|.|.+|+.+++.++++|++ |++.+++.
T Consensus       181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~  217 (363)
T cd08279         181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVP  217 (363)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence            3578999999999999999999999997 88876654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=84.59  E-value=1.4  Score=36.73  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHcc-CCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRP-FGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~a-fG~~V~~~~r~~~  177 (189)
                      -.|.+|.|.|.|.+|..+++.++. +|++|++.+++.+
T Consensus       161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~  198 (338)
T PRK09422        161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDD  198 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChH
Confidence            347899999999999999999997 5999999877653

>PRK08291 ectoine utilization protein EutC; Validated

Probab=84.56  E-value=1.9  Score=36.55  Aligned_cols=37  Identities=14%  Similarity=0.014  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~  178 (189)
                      ..++++|+|.|..|+..+..+. ..+. +|..|+|+..+
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~  169 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK  169 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence            3589999999999999888887 4664 69999998554

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=84.55  E-value=1.7  Score=35.20  Aligned_cols=36  Identities=31%  Similarity=0.396  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..|+++.|.|. |.+|+++++.+++.|.+|+..+++.
T Consensus       143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~  179 (325)
T cd08253         143 KAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSA  179 (325)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35899999995 9999999999999999999887754

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=84.39  E-value=3.5  Score=36.95  Aligned_cols=39  Identities=21%  Similarity=0.252  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcC----------CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGF----------GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+|||....
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~  369 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTE  369 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCCh
Confidence            689999999998          568899999999999999999998544

>PRK10262 thioredoxin reductase; Provisional

Probab=84.21  E-value=1.8  Score=36.13  Aligned_cols=37  Identities=24%  Similarity=0.162  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+++|.|||-|.+|-++|..|..+|.+|..+.+..
T Consensus       143 ~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        143 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            3468999999999999999999999999999998764

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=84.15  E-value=1.2  Score=37.95  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      ..|.+|.|.|.|.+|..+++.++.+|.+ |+..+++.
T Consensus       182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~  218 (365)
T cd05279         182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINK  218 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            3489999999999999999999999996 77776543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=84.03  E-value=1.9  Score=35.60  Aligned_cols=36  Identities=25%  Similarity=0.478  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+.+|.|.|.|.+|+.+++.++.+|.+|++.+++.
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~  199 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKE  199 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            446899999999999999999999999999988754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK14727 putative mercuric reductase; Provisional

Probab=83.93  E-value=1.6  Score=38.78  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .++|.|||-|.||-++|..+..+|.+|..+.+.
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            589999999999999999999999999988764

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=83.92  E-value=1.9  Score=35.68  Aligned_cols=37  Identities=16%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .-.|.+|.|.| .|.+|+.+++.+++.|++|++.++..
T Consensus       138 ~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~  175 (327)
T PRK10754        138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSA  175 (327)
T ss_pred             CCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            34679999995 89999999999999999999887653

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.84  E-value=1.8  Score=35.20  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      -.|.+|.|.|. |.+|+.+++.+++.|++|+..++
T Consensus       142 ~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~  176 (319)
T cd08267         142 KPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCS  176 (319)
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence            46899999997 99999999999999999988764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=83.82  E-value=1.6  Score=36.97  Aligned_cols=37  Identities=16%  Similarity=0.123  Sum_probs=28.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHc-cCC-CEEEEEcCCCCCc
Q 044056          143 GKTVFISGFGNIGVELAKRLR-PFG-VKIIAAKRSWASH  179 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~~~  179 (189)
                      -+++||||+|.+|+.-++.+. .+. -+|..|||+....
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~  166 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR  166 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH
Confidence            589999999999998766654 343 4799999986553

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=83.74  E-value=1.6  Score=38.96  Aligned_cols=39  Identities=13%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .....||+|.|||.|..|..+|.-+...+-+|....|..
T Consensus       199 ~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        199 PDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             ccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            345689999999999999999999999999998887754

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.69  E-value=2  Score=34.97  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..++++.|.|. |.+|+.+++.+++.|.+|+..+++.
T Consensus       143 ~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~  179 (328)
T cd08268         143 RPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTS  179 (328)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            35789999997 9999999999999999999887764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=83.68  E-value=2.3  Score=31.68  Aligned_cols=54  Identities=22%  Similarity=0.275  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++.++-++    +    ..+.++.||++.|+|-+. +|+.+|.+|..-|++|...+++.+
T Consensus         9 p~t~~a~~~ll----~----~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~   63 (140)
T cd05212           9 SPVAKAVKELL----N----KEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI   63 (140)
T ss_pred             ccHHHHHHHHH----H----HcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc
Confidence            44555555444    2    246799999999999875 699999999999999999986543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN02546 glutathione reductase

Probab=83.67  E-value=1.8  Score=39.60  Aligned_cols=36  Identities=19%  Similarity=0.164  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++|.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~  286 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK  286 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence            468999999999999999999999999999987643

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=83.54  E-value=11  Score=33.15  Aligned_cols=82  Identities=23%  Similarity=0.324  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCCCCCcCChhHHhhC-C-eEEEe---------cCCCCCCCchhHHHHHHHHHHHHHhcCC--CCCCCCCCC
Q 044056           77 NPMNLIIRFRVGLEGVDIDALTNC-A-IKAAR---------ILGDVSGNAASCAELSIYLMLGLLRKHI--VPTGETLLG  143 (189)
Q Consensus        77 p~Lk~I~~~~aG~d~id~~~~~~~-g-I~v~n---------~~g~~~~~a~~vAE~~l~liL~~~R~~~--~~~~~~l~g  143 (189)
                      ++++++.....|-|-- ++++++. + +.++.         .||.-..+--+--|     ..+++-.++  .....++++
T Consensus        86 ~rfsf~gNv~vG~dvs-l~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sare-----fv~Wyng~P~~~~le~dls~  159 (468)
T KOG1800|consen   86 ERFSFFGNVKVGRDVS-LKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISARE-----FVGWYNGLPENQNLEPDLSG  159 (468)
T ss_pred             cceEEEecceeccccc-HHHHhhcccEEEEEecCCCCcccCCCCcccccceehhh-----hhhhccCCCcccccCccccc
Confidence            6899999888888753 3444432 2 22222         22210000001111     123333344  334678999


Q ss_pred             CEEEEEcCCHHHHHHHHHHcc
Q 044056          144 KTVFISGFGNIGVELAKRLRP  164 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~a  164 (189)
                      .+|+|||.|++.--||+.|-.
T Consensus       160 ~~vvIvG~GNVAlDvARiLls  180 (468)
T KOG1800|consen  160 RKVVIVGNGNVALDVARILLS  180 (468)
T ss_pred             ceEEEEccCchhhhhhhhhhC
Confidence            999999999999999999863

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=83.44  E-value=1.8  Score=38.05  Aligned_cols=35  Identities=34%  Similarity=0.411  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++++.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  200 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL  200 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence            68999999999999999999999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=83.44  E-value=2.2  Score=36.57  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++++.|||-|.+|-++|..|...|.+|..+++...
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~  175 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS  175 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            468999999999999999999999999999987654

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=83.42  E-value=6.2  Score=33.82  Aligned_cols=73  Identities=11%  Similarity=0.040  Sum_probs=50.7

Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCC-CCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEE
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTG-ETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIA  171 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~-~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~  171 (189)
                      +.+.-.+|+|.|.-+.   ...++--  ++=++.+.++    .+ ..+.|++|+++|-+  ++.+..+..+..||+++..
T Consensus       116 ~~a~~~~vPVINa~~~---~~HPtQa--LaDl~Ti~e~----~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~  186 (336)
T PRK03515        116 TLAEYAGVPVWNGLTN---EFHPTQL--LADLLTMQEH----LPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRL  186 (336)
T ss_pred             HHHHhCCCCEEECCCC---CCChHHH--HHHHHHHHHH----hCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEE
Confidence            3344567999998553   3344332  2223333343    22 35899999999976  6899999999999999999


Q ss_pred             EcCCC
Q 044056          172 AKRSW  176 (189)
Q Consensus       172 ~~r~~  176 (189)
                      ..|..
T Consensus       187 ~~P~~  191 (336)
T PRK03515        187 VAPKA  191 (336)
T ss_pred             ECCch
Confidence            98854

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=83.42  E-value=1.3  Score=36.83  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=31.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056          143 GKTVFISGF-GNIGVELAKRLRPF-GVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~-G~IG~~vA~~l~af-G~~V~~~~r~~~  177 (189)
                      |.+|.|.|. |.+|+.++++++++ |++|++..++..
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~  185 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPE  185 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence            889999995 99999999999998 999999877643

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK13748 putative mercuric reductase; Provisional

Probab=83.41  E-value=1.8  Score=39.11  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ++++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            589999999999999999999999999998864

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=83.36  E-value=2.1  Score=35.13  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.+.+|.|.| -|.+|+.+++.++++|.+|++.+++.
T Consensus       141 ~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~  177 (324)
T cd08244         141 TPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGP  177 (324)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3478999999 69999999999999999999988754

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PRK05855 short chain dehydrogenase; Validated

Probab=83.31  E-value=2.1  Score=38.24  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=34.9

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .....++++.|+|- |.||+++|+.|..-|++|+..+|+..
T Consensus       310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~  350 (582)
T PRK05855        310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEA  350 (582)
T ss_pred             cccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            34667899999985 99999999999999999999998753

>TIGR02053 MerA mercuric reductase

Probab=83.26  E-value=1.9  Score=38.07  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  200 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR  200 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            48999999999999999999999999999987644

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=83.23  E-value=2.1  Score=37.23  Aligned_cols=35  Identities=14%  Similarity=0.090  Sum_probs=30.1

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGV---KIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~---~V~~~~r~~  176 (189)
                      .|.+|.|+| .|.||...++.++++|+   +|++.+++.
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~  213 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVND  213 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCH
Confidence            578999998 69999999999999875   799888754

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=83.22  E-value=5.9  Score=33.38  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=49.9

Q ss_pred             HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056           96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      .++..+++|.|+-+.   +..++--++=  ++.+.+.    .+ .+.|.+|+++|= +++-+..+..+..||++|....|
T Consensus       111 ~a~~~~vPVINa~~~---~~HPtQaL~D--l~Ti~e~----~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P  180 (304)
T TIGR00658       111 LAKYASVPVINGLTD---LFHPCQALAD--LLTIIEH----FG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATP  180 (304)
T ss_pred             HHHhCCCCEEECCCC---CCChHHHHHH--HHHHHHH----hC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECC
Confidence            344567999998554   3344433222  2333332    12 488999999997 78889999999999999999987


Q ss_pred             CCC
Q 044056          175 SWA  177 (189)
Q Consensus       175 ~~~  177 (189)
                      ..-
T Consensus       181 ~~~  183 (304)
T TIGR00658       181 EGY  183 (304)
T ss_pred             chh
Confidence            543

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=83.20  E-value=2.4  Score=37.18  Aligned_cols=35  Identities=31%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~  192 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASL  192 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            47999999999999999999999999999987643

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=83.16  E-value=1.8  Score=36.00  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      ..|++|.|.|-|.+|+.+++.++..|.+ |++.+++.
T Consensus       164 ~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~  200 (343)
T cd08235         164 KPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNE  200 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            4589999999999999999999999999 88776653

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=83.14  E-value=2  Score=37.77  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.+|-++|..+..+|.+|..+++...
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  204 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR  204 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence            47899999999999999999999999999988654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK14694 putative mercuric reductase; Provisional

Probab=83.09  E-value=1.8  Score=38.28  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ++++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            589999999999999999999999999998763

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=83.08  E-value=1.9  Score=41.95  Aligned_cols=38  Identities=16%  Similarity=0.106  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...||+|.|||-|.-|-+.|..|...|.+|..|++...
T Consensus       303 ~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~  340 (944)
T PRK12779        303 AAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD  340 (944)
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence            34699999999999999999999999999999998643

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=83.05  E-value=2.1  Score=37.23  Aligned_cols=36  Identities=36%  Similarity=0.422  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++|.|+|-|.+|-++|..++..|.+|..+++...
T Consensus       136 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       136 KVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            468999999999999999999999999999887653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN

Probab=83.04  E-value=16  Score=32.30  Aligned_cols=35  Identities=29%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~  172 (189)
                      ...+.||++.|.|-+.-.-.+++.+..+||+|.+.
T Consensus       306 ~~~l~Gkrvai~~~~~~~~~l~~~l~elGm~v~~~  340 (432)
T TIGR01285       306 HFFLGGKKVAIAAEPDLLAAWATFFTSMGAQIVAA  340 (432)
T ss_pred             HHhhCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEE
Confidence            34678999999998889999999999999997544

This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=83.00  E-value=2.1  Score=34.46  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ..|++|.|.|. |.+|+.+++.+++.|.+|+..++.
T Consensus       143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~  178 (309)
T cd05289         143 KAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA  178 (309)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc
Confidence            45799999996 999999999999999999887654

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]

Probab=82.74  E-value=2.1  Score=38.27  Aligned_cols=38  Identities=42%  Similarity=0.663  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ...+.|+|+-|=|+|++|+..|+++..+|.+|++..-+
T Consensus       246 ~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~  283 (514)
T KOG2250|consen  246 KKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDS  283 (514)
T ss_pred             CCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcC
Confidence            47899999999999999999999999999999987543

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=82.71  E-value=2.3  Score=34.85  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.++.|.|-+ .||+++++.+++.|.+|+..+++.
T Consensus       164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~  201 (342)
T cd08266         164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSE  201 (342)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3467899999996 899999999999999999987764

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=82.58  E-value=2.5  Score=37.72  Aligned_cols=42  Identities=24%  Similarity=0.257  Sum_probs=37.7

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ......+++|+|||-|.-|.+.|..|..-|..|+.|.+..+.
T Consensus       117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence            455777899999999999999999999999999999987654

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=82.57  E-value=2  Score=35.36  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|.+|.|.| -|.+|+.+++.+++.|++++...++.
T Consensus       140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~  175 (334)
T PTZ00354        140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSE  175 (334)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 69999999999999999987776654

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=82.36  E-value=3.1  Score=32.94  Aligned_cols=38  Identities=32%  Similarity=0.469  Sum_probs=34.0

Q ss_pred             CCCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEc
Q 044056          136 PTGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~  173 (189)
                      +.+.++.||++.|||-+.| |+-+|.+|..-|++|...|
T Consensus        55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~   93 (197)
T cd01079          55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVD   93 (197)
T ss_pred             ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence            3467999999999999975 9999999999999999985

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=82.33  E-value=2.2  Score=38.44  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .+++|.|+|-|.+|-++|..+..+|.+|..+.+.
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~  384 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA  384 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence            5799999999999999999999999999888754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=82.29  E-value=2.5  Score=34.35  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+++|.|+|-|.+|-++|..+..++.+|..+.+..
T Consensus       138 ~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       138 FFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             hcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            4468999999999999999999999999999888764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=82.26  E-value=2  Score=40.09  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++|.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~  346 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ  346 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence            57899999999999999999999999999987654

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=82.20  E-value=6.3  Score=33.21  Aligned_cols=71  Identities=18%  Similarity=0.182  Sum_probs=50.5

Q ss_pred             HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056           96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      .+...+++|.|+-+.   +..++--  ++=++.+.++    .+ .+.|++|+++|= +++.+..+..+..||++|....|
T Consensus       115 ~a~~~~vPVINag~~---~~HPtQa--L~Dl~Ti~e~----~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P  184 (304)
T PRK00779        115 LAEYSTVPVINGLTD---LSHPCQI--LADLLTIYEH----RG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATP  184 (304)
T ss_pred             HHHhCCCCEEeCCCC---CCChHHH--HHHHHHHHHH----hC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECC
Confidence            345567999999664   3343332  2223333343    12 488999999997 78999999999999999999987


Q ss_pred             CC
Q 044056          175 SW  176 (189)
Q Consensus       175 ~~  176 (189)
                      ..
T Consensus       185 ~~  186 (304)
T PRK00779        185 KG  186 (304)
T ss_pred             cc
Confidence            54

>PLN02702 L-idonate 5-dehydrogenase

Probab=82.19  E-value=2.3  Score=36.07  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~  175 (189)
                      ..|.+|.|+|.|.+|...++.++++|++ |+..++.
T Consensus       180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~  215 (364)
T PLN02702        180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVD  215 (364)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3689999999999999999999999996 6666654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=82.13  E-value=2.3  Score=37.62  Aligned_cols=35  Identities=26%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  204 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ  204 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            47899999999999999999999999988887643

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=82.08  E-value=2.2  Score=38.50  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ....|.|||.|..|..+|..|...|.+|..+++....
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4467999999999999999999999999999988644

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=81.96  E-value=2.2  Score=36.17  Aligned_cols=35  Identities=31%  Similarity=0.501  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~  175 (189)
                      -.+.+|.|.|.|.+|+.+++.++.+|++ |++.+++
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s  221 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVR  221 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3578999999999999999999999999 8777654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=81.94  E-value=8  Score=32.63  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=49.3

Q ss_pred             hhCCeEEEecC-CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC---CHHHHHHHHHHccCCCEEEEEc
Q 044056           98 TNCAIKAARIL-GDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF---GNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus        98 ~~~gI~v~n~~-g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~---G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ....|+|.|.- |....-.++.|+.     +.+.++    .+ .+.|++|+++|=   +++.+..+..+..||++|....
T Consensus       120 ~~~~vPVINa~~g~~~HPtQ~LaDl-----~Ti~e~----~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~  189 (305)
T PRK00856        120 ESSDVPVINAGDGSHQHPTQALLDL-----LTIREE----FG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIA  189 (305)
T ss_pred             HHCCCCEEECCCCCCCCcHHHHHHH-----HHHHHH----hC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEC
Confidence            34679999985 3311123445552     222232    12 588999999988   5999999999999999999998


Q ss_pred             CCCC
Q 044056          174 RSWA  177 (189)
Q Consensus       174 r~~~  177 (189)
                      |..-
T Consensus       190 P~~~  193 (305)
T PRK00856        190 PPTL  193 (305)
T ss_pred             Cccc
Confidence            8653

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=81.83  E-value=2.6  Score=35.16  Aligned_cols=35  Identities=29%  Similarity=0.555  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      ..|++|.|.|-|.+|+.+++.++++|. +|++.+++
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~  197 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVN  197 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            368999999999999999999999999 57777644

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=81.78  E-value=2.5  Score=35.31  Aligned_cols=35  Identities=26%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~  175 (189)
                      ..|.+|.|.|.|.+|+.+++.+++.|.+ |++.+++
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~  195 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPN  195 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            4689999999999999999999999997 8777543

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=81.74  E-value=2.3  Score=39.50  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=32.9

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPF-GVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~~  177 (189)
                      .--.+++|.|.| .|-||+.+++.|..- |.+|++++|...
T Consensus       311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~  351 (660)
T PRK08125        311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD  351 (660)
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence            344688999999 699999999999864 799999998654

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=81.70  E-value=2.1  Score=41.86  Aligned_cols=38  Identities=24%  Similarity=0.152  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+|+|.|||-|.-|-..|..|...|.+|..+++...
T Consensus       536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~  573 (1019)
T PRK09853        536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN  573 (1019)
T ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            35799999999999999999999999999999997643

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=81.70  E-value=2.2  Score=35.45  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|++|.|.|- |.+|+.+++.+++.|.+|+...++.
T Consensus       146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~  181 (341)
T cd08290         146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDR  181 (341)
T ss_pred             CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            5899999986 9999999999999999998887654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=81.62  E-value=1.6  Score=42.72  Aligned_cols=38  Identities=29%  Similarity=0.517  Sum_probs=33.1

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC------EEEEEcCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV------KIIAAKRS  175 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~------~V~~~~r~  175 (189)
                      ...|.+.+|.|||+|.||.++++.|...|+      ++..+|..
T Consensus       414 Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D  457 (1008)
T TIGR01408       414 QQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPD  457 (1008)
T ss_pred             HHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCC
Confidence            356788999999999999999999998887      78888864

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=81.60  E-value=2.4  Score=35.35  Aligned_cols=35  Identities=37%  Similarity=0.537  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      .|.+|.|.|.|.+|+.++++++.+|.+ |++.+++.
T Consensus       159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~  194 (343)
T cd08236         159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDD  194 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            478999999999999999999999998 88887654

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=81.52  E-value=2.4  Score=37.99  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccC---CCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPF---GVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~af---G~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..+..|   |.+|..+.+...
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~  224 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM  224 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence            58999999999999999887776   999998876643

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=81.44  E-value=2.7  Score=38.29  Aligned_cols=36  Identities=28%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+++|.|||-|.+|-++|..+..+|.+|..+.+..
T Consensus       141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            468999999999999999999999999999998765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=81.36  E-value=1.5  Score=42.88  Aligned_cols=41  Identities=29%  Similarity=0.451  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      ...|+..+|.|+|+|.+|.++|+.|..-|. +|..+|...-+
T Consensus        19 q~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~   60 (1008)
T TIGR01408        19 MQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQ   60 (1008)
T ss_pred             HHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeec
Confidence            457888999999999999999999999998 58888876533

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=81.26  E-value=2.3  Score=35.26  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=29.6

Q ss_pred             CCCEEEEE--cCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFIS--GFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIv--G~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.++.|+  |.|.+|+..++.++++|++|++.+++.
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~  178 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRK  178 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            45566665  899999999999999999999887754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK08105 flavodoxin; Provisional

Probab=81.23  E-value=2.3  Score=31.85  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=30.0

Q ss_pred             CCCCCCEEEEEcCCH--------HHHHHHHHHccCCCEEEE
Q 044056          139 ETLLGKTVFISGFGN--------IGVELAKRLRPFGVKIIA  171 (189)
Q Consensus       139 ~~l~gktvGIvG~G~--------IG~~vA~~l~afG~~V~~  171 (189)
                      ..|.|++.+|+|+|.        .++.+.++|+.+|++.++
T Consensus        80 ~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~  120 (149)
T PRK08105         80 GYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVG  120 (149)
T ss_pred             cccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence            368899999999997        899999999999999876

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=81.18  E-value=2.4  Score=35.64  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~  175 (189)
                      ..|.+|.|.|.|.+|+.+++.+++.|++ |++.++.
T Consensus       173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~  208 (350)
T cd08256         173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLK  208 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            3589999999999999999999999987 5666654

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=81.17  E-value=3.4  Score=35.60  Aligned_cols=36  Identities=31%  Similarity=0.342  Sum_probs=32.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...|.|||-|-.|..+|..|...|.+|..+++.+..
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            467999999999999999999999999999987654

>PLN02985 squalene monooxygenase

Probab=81.13  E-value=7.3  Score=35.21  Aligned_cols=41  Identities=24%  Similarity=0.194  Sum_probs=34.8

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.-....|.|||.|-.|..+|..|..-|.+|..+++...
T Consensus        37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             ccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            34455566899999999999999999989999999998753

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=80.68  E-value=2.8  Score=36.62  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+++|.|+|-|.+|-++|..++.+|.+|..+.+..
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~  182 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED  182 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            46899999999999999999999999999887754

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=80.57  E-value=1.9  Score=35.66  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      .|.+|.|.|.|.+|+.+++.++++|.+|++..
T Consensus       164 ~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~  195 (306)
T cd08258         164 PGDTVVVFGPGPIGLLAAQVAKLQGATVVVVG  195 (306)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEC
Confidence            57999999999999999999999999998764

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>PTZ00052 thioredoxin reductase; Provisional

Probab=80.54  E-value=2.4  Score=38.02  Aligned_cols=33  Identities=33%  Similarity=0.422  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .+++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            468999999999999999999999999998763

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=80.48  E-value=3.1  Score=34.22  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|.+|.|.|-|.+|+.+++.+++.|++|+..+++.
T Consensus       160 ~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~  194 (336)
T cd08276         160 PGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSD  194 (336)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            57899999999999999999999999999887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia

Probab=80.40  E-value=20  Score=30.74  Aligned_cols=35  Identities=40%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ..+.|+++.|.|-+...-.+++.+..+||+|...-
T Consensus       275 ~~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~  309 (399)
T cd00316         275 EYLGGKKVAIFGDGDLLLALARFLLELGMEVVAAG  309 (399)
T ss_pred             HHhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEE
Confidence            45789999999999888889999999999965544

This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=80.23  E-value=3.2  Score=34.58  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      -.|.+|.|.|.|.+|+.+++.++.+|. +|+..+++.
T Consensus       166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~  202 (347)
T cd05278         166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNP  202 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            358999999999999999999999996 788876543

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK10537 voltage-gated potassium channel; Provisional

Probab=80.23  E-value=2.6  Score=36.84  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ....+-|+|+|++|+.+++.|+..|.++...++.
T Consensus       239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d  272 (393)
T PRK10537        239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL  272 (393)
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence            3567999999999999999999889888888754

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=80.15  E-value=2.6  Score=35.18  Aligned_cols=42  Identities=29%  Similarity=0.294  Sum_probs=36.9

Q ss_pred             CCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...+|+||++-|||-++| |+-+|..|..-+++|.......+.
T Consensus       150 ~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~  192 (283)
T COG0190         150 YGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKD  192 (283)
T ss_pred             hCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCC
Confidence            566999999999999986 999999999999999988766543

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=80.12  E-value=3  Score=34.73  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.+|.|.|.|. +|+++++.+++.|.+|+...++.
T Consensus       165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~  200 (341)
T cd08297         165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD  200 (341)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999976 99999999999999999987764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		4e-07
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		7e-07
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		9e-05
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		8e-04

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 50  LSMHSLYASYGTSEQMIASDS-----NVITRANPMNLIIRFRVGLEGVDIDALTNCAIKA 104
           LS   L A     E +I   +     +VI  A  + ++ R   G++ VD++A T    K 
Sbjct: 56  LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATR---KG 112
Query: 105 ARILGDVSGNAASCAELSIYLMLGLLRKHIVPT--------------GETLLGKTVFISG 150
             ++   +GN+ S AEL+  +++ L R+    T              G  L GKT+ I G
Sbjct: 113 ILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG 172
Query: 151 FGNIGVELAKRLRPFGVKII 170
            G IG E+A R++ FG+K I
Sbjct: 173 LGRIGREVATRMQSFGMKTI 192

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 33/176 (18%)
Query: 37  LQNYLSIKGLCFFLSMHSLYASYGTSEQMIASDSNVITR-----ANPMNLIIRFRVGLEG 91
           L+ Y  ++ +  + S   L    G  + +I S +  ITR     A  + +I     G + 
Sbjct: 19  LKKYADVE-IILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDN 77
Query: 92  VDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK-HI---------------V 135
           +D++  T   I   ++ G +S    + AE ++ L++ L+RK H                +
Sbjct: 78  IDLEEATKRGIYVTKVSGLLS---EAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKI 134
Query: 136 PTG----ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS 187
            TG    E+L GK V I G G IG  +A+RL PFGVK+      W+ H +V  +  
Sbjct: 135 WTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLY----YWSRHRKVNVEKE 186

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 71  NVITRANPMNL--IIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
            VI R  P N+  I  + +G + +D+DA   C  +  ++     G   + AE+++ L+LG
Sbjct: 59  EVIDRI-PENIKCISTYSIGFDHIDLDA---CKARGIKVGNAPHGVTVATAEIAMLLLLG 114
Query: 129 ----------LLRKHIVP-------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
                     ++R    P        GE L  KT+ I GFG+IG  LAKR + F + I
Sbjct: 115 SARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDI 172

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 73  ITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK 132
           I +A  + L++   VG + +D+D +     K + +L     N  S AE  +  ML L+R 
Sbjct: 80  IDKAKKLKLVVVAGVGSDHIDLDYINQTGKKIS-VLEVTGSNVVSVAEHVVMTMLVLVR- 137
Query: 133 HIVPTGETLL-----------------GKTVFISGFGNIGVELAKRLRPFGVK 168
           + VP  E ++                 GKT+   G G IG  + +RL PF  K
Sbjct: 138 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPK 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	5e-16
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	5e-16
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-15
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	6e-15
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	9e-15
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-14
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	2e-14
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-14
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	5e-14
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	6e-14
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	7e-14
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	1e-13
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	6e-13
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	8e-13
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-12
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-12
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-11
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-11
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	1e-11
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-11
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	4e-11
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	5e-11
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	5e-11
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	5e-11
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-10
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	3e-10
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	4e-10
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	5e-10
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	5e-10
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-08
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	2e-08
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	3e-08
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-06
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	5e-05
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	5e-05
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	6e-05
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	7e-05
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	1e-04
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	2e-04
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	2e-04
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	2e-04
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	3e-04
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	4e-04
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	4e-04
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	7e-04
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	8e-04

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 21/121 (17%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALT--NCAIKAARILGDVSGNAASCAELSIYLM 126
               I +A  + L++   VG + +D+D +      I    + G    N  S AE  +  M
Sbjct: 75  TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTG---SNVVSVAEHVVMTM 131

Query: 127 LGLLR----------------KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
           L L+R                  I      + GKT+   G G IG  + +RL PF  K +
Sbjct: 132 LVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKEL 191

Query: 171 A 171
            
Sbjct: 192 L 192

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 19/119 (15%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
               I +A  + L +   +G + VD+ +  +  +  A +      N+ S AE  + ++L 
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTY---CNSISVAEHVVMMILS 160

Query: 129 LLR----------------KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           L+R                   V     L    V     G IG+ + +RL PF V +  
Sbjct: 161 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHY 219

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 21/120 (17%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
            +  I +A  + L++   +G + +D+ A     +  A + G    N  S AE  +  +L 
Sbjct: 77  TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILI 133

Query: 129 LLRKHIVP-----------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           L+R + VP                     L GKT+   G G IG  L +RL+PFG  ++ 
Sbjct: 134 LMR-NFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLY 192

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score = 71.2 bits (175), Expect = 6e-15
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 27/122 (22%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDV----SGNAASCAELSIY 124
           D+ V+  A  + ++ R  VGL+ VD+DA T   +        V    + N  S AE ++ 
Sbjct: 57  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVL-------VVNAPTSNIHSAAEHALA 109

Query: 125 LMLGLLRKHIVP---------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
           L+L   R  I                 +G  + GKTV + G G IG  +A+R+  FG  +
Sbjct: 110 LLLAASR-QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYV 168

Query: 170 IA 171
           +A
Sbjct: 169 VA 170

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score = 69.9 bits (172), Expect = 9e-15
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 25/120 (20%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDV----SGNAASCAELSIY 124
             +VI +   + +I R  +GL+ +D +      IK       V      +  S  EL+I 
Sbjct: 59  TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIK-------VVYAPGASTDSAVELTIG 111

Query: 125 LMLGLLRKHIVP-------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           LM+   R  +                G  L GKT+ I GFG IG ++       G+K++A
Sbjct: 112 LMIAAAR-KMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLA 170

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 27/122 (22%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDV----SGNAASCAELSIY 124
              VI  A  + +I R  VGL+ +D++A     I+       V    + ++ S AEL++ 
Sbjct: 57  TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIE-------VVNAPAASSRSVAELAVG 109

Query: 125 LMLGLLRKHIVP---------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
           LM  + R  I                  G  L GKT+ I GFG IG ++AK     G+ I
Sbjct: 110 LMFSVAR-KIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNI 168

Query: 170 IA 171
           + 
Sbjct: 169 LL 170

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 27/125 (21%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVS----GNAASCAELSIY 124
            +  + +   +  I     GL+ +  +++         +   V+     NA + AE ++ 
Sbjct: 41  TAEELAKMPRLKFIQVVTAGLDHLPWESIP------PHVT--VAGNAGSNADAVAEFALA 92

Query: 125 LMLGLLRKHIV--------------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
           L+L   +  I+                   + G+ V + G G IG  + K L   G ++ 
Sbjct: 93  LLLAPYK-RIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVR 151

Query: 171 AAKRS 175
              R+
Sbjct: 152 GFSRT 156

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 27/122 (22%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDV----SGNAASCAELSIY 124
            ++VI  A  + ++ R   G++ VD++A T   I        V    +GN+ S AEL+  
Sbjct: 80  TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGIL-------VMNTPNGNSLSAAELTCG 132

Query: 125 LMLGLLRKHIVP---------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKI 169
           +++ L R  I                  G  L GKT+ I G G IG E+A R++ FG+K 
Sbjct: 133 MIMCLAR-QIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191

Query: 170 IA 171
           I 
Sbjct: 192 IG 193

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score = 67.6 bits (166), Expect = 5e-14
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
             +         +I     G++ +D++ +    +    +  +    + S AE +  L+L 
Sbjct: 40  IKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVV----LCSNAGAYSISVAEHAFALLLA 95

Query: 129 LLRKHIVP-------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
             + +I+                  L GK + I G+G IG  +A   + FG+++IA
Sbjct: 96  HAK-NILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIA 150

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 87  VGLEGVDIDALTNCAIKAARILGDVSG-NAASCAELSIYLMLGLLRK------------- 132
            G++ + + AL    +    ++ + SG +A + +E  +  ML ++R              
Sbjct: 70  AGVDYLPLKALQAAGV----VVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQ 125

Query: 133 -HIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
             +  T  TL G+ + I G G IG  LA +    G+ +I    +
Sbjct: 126 WALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT 169

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 76  ANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVS----GNAASCAELSIYLMLGLLR 131
             P+N +     G + VD   L    I         S     NA +  E     +L L  
Sbjct: 59  GTPINFVGTATAGTDHVDEAWLKQAGIG-------FSAAPGCNAIAVVEYVFSALLMLAE 111

Query: 132 KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           +     G +L  +T+ I G GN+G  L  RL   G++ + 
Sbjct: 112 RD----GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL 147

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 76  ANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVS----GNAASCAELSIYLMLGLLR 131
            +P+  +    +G + +D+D      I         S     NA    +  +  +L +  
Sbjct: 56  GSPVRFVGTCTIGTDHLDLDYFAEAGIA-------WSSAPGCNARGVVDYVLGCLLAMAE 108

Query: 132 KHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                 G  L  +T  + G G +G  L + LR  G K++ 
Sbjct: 109 VR----GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV 144

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 31/131 (23%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVS----GNAASCAELSIY 124
              V+  A  + +I     G + +D++  T   I        V+      + + AE ++ 
Sbjct: 55  TREVLENAERLKVISCHSAGYDNIDLEEATKRGIY-------VTKVSGLLSEAVAEFTVG 107

Query: 125 LMLGLLRK--------------------HIVPTGETLLGKTVFISGFGNIGVELAKRLRP 164
           L++ L+RK                          E+L GK V I G G IG  +A+RL P
Sbjct: 108 LIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIP 167

Query: 165 FGVKIIAAKRS 175
           FGVK+    R 
Sbjct: 168 FGVKLYYWSRH 178

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score = 64.5 bits (158), Expect = 8e-13
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 29/128 (22%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILG----DVSGNAASCAELSIY 124
           D++ +     + +I     G +  D+DA T     A  +      D+       AEL+I 
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACT-----ARGVWLTFVPDLLTVPT--AELAIG 110

Query: 125 LMLGLLRKHIVP-----------------TGETLLGKTVFISGFGNIGVELAKRLRPFGV 167
           L +GL R H+                    G  L   TV   G G IG+ +A RL+ +G 
Sbjct: 111 LAVGLGR-HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGA 169

Query: 168 KIIAAKRS 175
            +   +  
Sbjct: 170 TLQYHEAK 177

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 32/132 (24%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILG----DVSGNAASCAELSIY 124
           D  V   A  + ++  + VG + +DI+  T        I      DV  +A   A+L+  
Sbjct: 58  DKEVFENAPKLRIVANYAVGYDNIDIEEAT-----KRGIYVTNTPDVLTDAT--ADLAFA 110

Query: 125 LMLGLLRK-----HIVPTGE----------------TLLGKTVFISGFGNIGVELAKRLR 163
           L+L   R        V +GE                 + GKT+ I G G IG  +AKR +
Sbjct: 111 LLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAK 170

Query: 164 PFGVKIIAAKRS 175
            F ++I+   R+
Sbjct: 171 GFNMRILYYSRT 182

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 28/128 (21%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILG----DVSGNAASCAELSIY 124
           D+ V+ RA  + +I  + VG++ VD++A      +   I       V   A   A+L++ 
Sbjct: 56  DAEVMDRAKGLKVIACYSVGVDHVDLEAA-----RERGIRVTHTPGVLTEA--TADLTLA 108

Query: 125 LMLGLLRK-----HIVPTGE------------TLLGKTVFISGFGNIGVELAKRLRPFGV 167
           L+L + R+          G              L G T+ + G G IG  +AKR   FG+
Sbjct: 109 LLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGM 168

Query: 168 KIIAAKRS 175
           +++   R+
Sbjct: 169 RVVYHART 176

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 29/129 (22%)

Query: 69  DSNVITRANP-MNLIIRFRVGLEGVDIDALTNCAIKAARILG----DVSGNAASCAELSI 123
              VI R    +  I  + +G + +D+DA      KA  I           A   AE+++
Sbjct: 57  RKEVIDRIPENIKCISTYSIGFDHIDLDAC-----KARGIKVGNAPHGVTVA--TAEIAM 109

Query: 124 YLMLGLLRK-----HIV---------PT---GETLLGKTVFISGFGNIGVELAKRLRPFG 166
            L+LG  R+      ++         P    GE L  KT+ I GFG+IG  LAKR + F 
Sbjct: 110 LLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFD 169

Query: 167 VKIIAAKRS 175
           + I      
Sbjct: 170 MDIDYFDTH 178

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 29/123 (23%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDV----SGNAASCAELSIY 124
             +VI  A  +  I  F +G   VD+DA     I        V      N  S AEL I 
Sbjct: 60  TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIP-------VFNAPFSNTRSVAELVIG 112

Query: 125 LMLGLLRKHIVP----------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVK 168
            +L LLR   VP                      GK + I G+G+IG +L       G+ 
Sbjct: 113 ELLLLLRG--VPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMY 170

Query: 169 IIA 171
           +  
Sbjct: 171 VYF 173

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 34/129 (26%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDV----SGNAASCAELSIY 124
               + +   + +I+R   G + +DI +  +  I        V    + +    A+ ++ 
Sbjct: 76  TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIA-------VCNVPAASVEETADSTLC 128

Query: 125 LMLGLLRKHIVP----------------------TGETLLGKTVFISGFGNIGVELAKRL 162
            +L L R                               + G+T+ I G G +G  +A R 
Sbjct: 129 HILNLYR-RATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA 187

Query: 163 RPFGVKIIA 171
           + FG  ++ 
Sbjct: 188 KAFGFNVLF 196

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 29/123 (23%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDV----SGNAASCAELSIY 124
              +   AN +  +  F VG   V++ A     I        V      N  S AEL I 
Sbjct: 71  TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIP-------VFNAPFSNTRSVAELVIG 123

Query: 125 LMLGLLRKHIVP----------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVK 168
            ++ L+R+  +                     + GKT+ I G+GNIG ++       G+ 
Sbjct: 124 EIIMLMRR--IFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMT 181

Query: 169 IIA 171
           +  
Sbjct: 182 VRY 184

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 21/120 (17%)

Query: 69  DSNVITRANPMNL-IIRFR-VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLM 126
            +  +       +  +  R VG++ +D+        +   +      +  + AE +    
Sbjct: 59  IAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNV---PVYSPNAIAEHAAIQA 115

Query: 127 LGLLRKHIVP---------------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
             +LR                     G  +  + V + G G+IG    + +  FG K+I 
Sbjct: 116 ARILR-QDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT 174

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 18/100 (18%)

Query: 87  VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRK-------------- 132
           VG + +D+ A+    I+ + +    + + A+ AE ++   L LLR               
Sbjct: 77  VGTDNIDMTAMKQYGIRLSNV---PAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE 133

Query: 133 -HIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                 G+ L  +TV + G G+IG    K  + FG K+IA
Sbjct: 134 KAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 22/102 (21%)

Query: 87  VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVP---------- 136
            G + +D +         A +      +  + AEL++   + LLR               
Sbjct: 78  AGTDHIDKEYAKELGFPMAFV---PRYSPNAIAELAVTQAMMLLRH--TAYTTSRTAKKN 132

Query: 137 -------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                    + +   TV + G G IG   A+     G  +I 
Sbjct: 133 FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG 174

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 29/124 (23%)

Query: 69  DSNVITRANP-MNLIIRFRVGLEGVDIDALTNCAIKAARILG----DVSGNAASCAELSI 123
           D  ++  A   + +I    VG++ + +D +     K   I      DV  +    AEL++
Sbjct: 66  DKRILDAAGANLKVISTMSVGIDHLALDEI-----KKRGIRVGYTPDVLTDT--TAELAV 118

Query: 124 YLMLGLLRK-----HIVPTGE------------TLLGKTVFISGFGNIGVELAKRLRPFG 166
            L+L   R+       V  G              L   TV I G G IG  +A+RL+PFG
Sbjct: 119 SLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFG 178

Query: 167 VKII 170
           V+  
Sbjct: 179 VQRF 182

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 27/127 (21%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARIL----GDVSGNAASCAELSIY 124
            +  + +   + +I    VG + VD+        +   I       V   A   A+L I 
Sbjct: 84  SNEWMEKLPSLGIIAINGVGTDKVDLARA-----RRRNIDVTTTPGV--LADDVADLGIA 136

Query: 125 LMLGLLRK----------------HIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVK 168
           LML +LR+                  +P G +  GK + + G G IG  LA R   FG+ 
Sbjct: 137 LMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196

Query: 169 IIAAKRS 175
           +    RS
Sbjct: 197 VRYWNRS 203

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 29/129 (22%)

Query: 69  DSNVITRANP-MNLIIRFRVGLEGVDIDALTNCAIKAARILG----DVSGNAASCAELSI 123
            + VI +  P +  I    VG + +D+ A      ++  I      DV  +A  CAE+++
Sbjct: 84  TAEVIRKLQPGLKTIATLSVGYDHIDMAAA-----RSLGIKVLHTPDVLSDA--CAEIAM 136

Query: 124 YLMLGLLRK-----HIV---------PT---GETLLGKTVFISGFGNIGVELAKRLRPFG 166
            L+L   R+      +V         PT   G  L G+ + I G G IG  +A R R FG
Sbjct: 137 LLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFG 196

Query: 167 VKIIAAKRS 175
           + I    R+
Sbjct: 197 LAIHYHNRT 205

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 30/128 (23%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARIL----GDVSGNAASCAELSIY 124
           D+ +I     + ++  F VGL+ VD+        +   +      DV       A+L+I 
Sbjct: 78  DAELIDALPKLEIVSSFSVGLDKVDLIKC-----EEKGVRVTNTPDV--LTDDVADLAIG 130

Query: 125 LMLGLLRKHIVPTGETLL-----------------GKTVFISGFGNIGVELAKRLRPFGV 167
           L+L +LR+  +   +  +                 GK V I G G IG+ +A+R   F  
Sbjct: 131 LILAVLRR--ICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDC 188

Query: 168 KIIAAKRS 175
            I    RS
Sbjct: 189 PISYFSRS 196

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 32/131 (24%)

Query: 69  DSNVITRANPMNLIIR----FRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIY 124
              ++ R   + +I +     R     +D++A T+  +    ++ +  G+  + AEL+  
Sbjct: 62  TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGV----VVLEGKGSPVAPAELTWA 117

Query: 125 LMLGLLRK------------------------HIVPTGETLLGKTVFISGFGNIGVELAK 160
           L++   R+                             G  L G+T+ I G+G IG  +A 
Sbjct: 118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177

Query: 161 RLRPFGVKIIA 171
             R FG+ ++ 
Sbjct: 178 YGRAFGMNVLV 188

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 21/92 (22%), Positives = 35/92 (38%)

Query: 91  GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISG 150
           G+    L  C  K  R L  +          SI    G +   I  T  T+ G  V + G
Sbjct: 103 GISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLG 162

Query: 151 FGNIGVELAKRLRPFGVKIIAAKRSWASHSQV 182
            G +G+ +A++    G K+    R     +++
Sbjct: 163 LGRVGMSVARKFAALGAKVKVGARESDLLARI 194

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 34/134 (25%)

Query: 69  DSNVITRANP-MNLIIRFRVGLEGVDIDALTNCAIKAARIL----GDVSGNAASCAELSI 123
           ++++I+     + +      G + +D+DAL         +           A   ++L++
Sbjct: 70  NADLISHLPSSLKVFAAAGAGFDWLDLDALN-----ERGVAFANSRGAGDTAT--SDLAL 122

Query: 124 YLMLGLLRK---------------------HIVPTGETLLGKTVFISGFGNIGVELAKR- 161
           YL+L + R                       I  +     G  +   G G I  E+A++ 
Sbjct: 123 YLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKA 182

Query: 162 LRPFGVKIIAAKRS 175
           +   G+K++    +
Sbjct: 183 VHGLGMKLVYYDVA 196

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 94  IDALTNCAIKAARILGDVSG-NAASCAELSIYLMLGLLRKHIV------------PTGET 140
           +D L +   +    L +V G      +E     +L L+R+  +               + 
Sbjct: 78  VDVLLDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQG 137

Query: 141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
           L G+T+ I G G+IG  +A   + FG+K++   RS
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS 172

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
            T    +V I G G +G ++A+ L+ +G  +    RS
Sbjct: 135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRS 171

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           G  L G  V + G G +G  +A      G++++A
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           G  L    + I GFGN G  LAK +   G K+I 
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG 249

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           G  + G  V I GFGN+G   A+     G +++A
Sbjct: 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
              + GKTV I G GN+G   A  L   G K+IA
Sbjct: 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
           G  +    + + GFGN+G    K +   G K+ A
Sbjct: 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA 240

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Length = 456

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
            + L  K   +SG GN+   L ++L   G  ++ 
Sbjct: 234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLT 267

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Length = 449

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
            +TL+GKTV ++GFGN+    AK+L   G K + 
Sbjct: 225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA 172
            ++L G  V + G GN+   L K+L   G K++  
Sbjct: 168 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT 202

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                 KT  + GFGN+G+   + L  FG K I 
Sbjct: 239 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT 272

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA 172
            +L G TV + G G +G  LA      G +++ A
Sbjct: 171 GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 204

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Length = 470

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
              +  +T  +SG GN+ +   ++L    VK++ 
Sbjct: 247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIA 171
           G      TV + GFGN+G   A  + +  G K++A
Sbjct: 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 238

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419

 Score = 38.2 bits (90), Expect = 8e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 139 ETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIA 171
           +TL GKT+ I G+GN G  LAK +   FG+K++A
Sbjct: 208 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.98
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.98
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.98
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.98
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.97
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.97
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.97
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.97
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.97
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.97
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.97
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.97
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.97
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.96
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.95
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.91
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.83
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.55
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.51
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.43
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.23
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.17
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.09
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.04
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.94
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.88
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.73
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.67
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.59
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.4
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.12
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.07
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.06
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.97
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.96
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.96
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.8
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.73
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.67
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.6
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.59
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.59
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.66
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.43
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.39
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.37
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.37
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.32
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.31
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.27
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.27
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.24
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.23
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.22
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.21
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.19
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.17
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.15
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.1
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.0
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.99
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.96
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.83
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.81
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.8
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.76
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.66
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.66
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.61
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.4
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.33
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.33
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.31
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.31
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.29
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.22
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.2
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.18
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.18
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.17
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.16
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.16
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.16
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.13
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.1
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.05
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.02
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.98
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	95.96
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.95
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.94
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	95.94
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.92
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.92
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.91
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.91
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.86
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.82
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.81
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.8
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.75
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.73
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.71
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.7
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.67
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.66
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.46
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.44
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.42
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.4
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.38
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.37
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.34
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.28
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.26
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	95.25
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.21
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.19
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.18
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.16
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.13
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.13
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.12
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.07
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.06
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.01
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.99
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.98
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.96
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.95
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.94
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.92
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.89
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.84
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.84
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.81
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.79
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.78
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.78
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	94.71
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.54
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.54
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.54
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.52
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.52
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.46
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.46
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.45
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	94.42
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.41
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.41
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.4
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.34
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.34
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.34
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.32
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	94.32
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	94.3
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.23
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.23
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.18
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.17
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.16
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.12
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	94.11
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.09
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.08
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.07
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.06
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.05
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.04
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.02
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.98
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.96
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.95
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.93
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.93
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	93.86
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	93.86
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.84
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.81
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.81
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.78
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.72
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.63
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.58
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.55
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.54
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.5
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.49
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.46
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	93.46
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	93.43
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	93.42
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.42
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	93.39
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.38
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	93.37
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.37
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	93.36
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	93.36
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.35
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.31
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	93.31
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	93.26
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.25
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.25
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	93.24
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	93.21
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	93.19
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.18
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	93.13
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.12
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	93.11
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	93.09
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.08
3rih_A	293	Short chain dehydrogenase or reductase; structural	92.96
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	92.96
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	92.92
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	92.92
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	92.9
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	92.89
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	92.89
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	92.88
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	92.88
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.86
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.86
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.84
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.83
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.81
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.8
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.78
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.78
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	92.76
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.72
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	92.7
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	92.69
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	92.69
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.64
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	92.63
4dqx_A	277	Probable oxidoreductase protein; structural genomi	92.59
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	92.58
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.57
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	92.57
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.5
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	92.47
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	92.47
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	92.41
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.4
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	92.4
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.38
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	92.37
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	92.36
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.35
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	92.33
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	92.31
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	92.29
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	92.25
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	92.25
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.24
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.22
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.22
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	92.21
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	92.2
3on5_A	362	BH1974 protein; structural genomics, joint center	92.14
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	92.14
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	92.14
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.12
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	92.03
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.02
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	92.01
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	92.01
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	91.98
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	91.97
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	91.97
3cxt_A	291	Dehydrogenase with different specificities; rossma	91.94
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	91.94
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	91.94
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	91.93
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	91.9
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	91.89
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	91.87
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	91.86
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	91.85
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	91.8
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	91.79
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	91.78
1lnq_A	336	MTHK channels, potassium channel related protein;	91.67
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	91.64
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	91.6
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	91.57
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	91.57
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	91.43
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	91.33
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.29
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	91.27
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	91.24
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.15
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	91.11
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	91.11
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	91.1
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	91.05
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	91.04
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	91.03
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	90.97
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	90.97
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.9
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	90.9
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	90.89
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	90.84
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	90.83
1xq1_A	266	Putative tropinone reducatse; structural genomics,	90.81
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	90.8
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.71
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	90.69
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	90.66
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.61
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	90.56
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	90.52
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	90.44
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	90.29
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	90.25
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	90.23
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	90.11
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	90.1
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	90.09
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	90.01
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	90.0
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	89.96
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	89.96
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	89.93
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.63
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	89.56
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	89.56
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	89.51
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	89.5
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	89.42
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	89.42
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	89.4
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	89.35
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	89.33
1xhl_A	297	Short-chain dehydrogenase/reductase family member	89.31
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	89.23
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	89.23
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	89.2
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	89.18
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	89.12
4f6c_A	427	AUSA reductase domain protein; thioester reductase	88.98
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	88.96
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	88.96
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	88.95
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	88.86
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	88.84
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	88.84
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	88.73
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	88.73
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	88.65
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	88.56
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	88.38
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	88.34
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	88.33
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	88.3
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	88.3
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	88.28
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	88.27
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	88.24
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	88.16
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	88.11
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	88.09
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	87.93
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	87.86
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	87.8
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	87.78
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	87.76
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	87.7
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	87.69
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	87.6
1ojt_A	482	Surface protein; redox-active center, glycolysis,	87.56
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	87.55
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	87.44
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	87.33
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	87.29
4had_A	350	Probable oxidoreductase protein; structural genomi	87.23
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	87.2
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	87.17
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.13
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	87.08
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	86.9
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	86.85
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	86.82
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	86.66
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	86.66
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	86.58
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	86.45
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	86.42
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	86.21
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	86.21
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	86.17
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	86.16
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	86.1
2r7k_A	361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	86.01
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	85.98
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	85.95
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	85.84
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	85.82
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	85.79
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	85.67
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	85.36
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	85.34
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	85.31
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	85.3
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	85.27
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	85.08
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	85.06
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	85.01
3r9u_A	315	Thioredoxin reductase; structural genomics, center	85.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	84.94
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	84.81
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	84.72
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	84.72
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	84.7
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	84.67
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	84.57
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	84.48
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	84.43
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	84.4
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	84.35
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	84.21
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	84.1
2bry_A	497	NEDD9 interacting protein with calponin homology a	84.07
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	83.74
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	83.73
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	83.72
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	83.55
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	83.45
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	83.44
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	83.43
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	83.4
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	83.34
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	83.14
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	83.05
1fec_A	490	Trypanothione reductase; redox-active center, oxid	83.01
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	82.78
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	82.67
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	82.62
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	82.56
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	82.36
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	82.07
4dna_A	463	Probable glutathione reductase; structural genomic	82.02
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	81.94
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	81.94
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	81.8
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	81.79
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	81.43
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	81.41
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	81.22
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	81.19
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	81.02
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	80.94
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	80.86
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	80.85
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	80.85
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	80.74
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	80.67
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	80.66
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	80.64
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	80.55
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	80.42
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	80.08
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	80.03

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=2.2e-35  Score=249.53  Aligned_cols=158  Identities=23%  Similarity=0.272  Sum_probs=133.1

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhcccCceeeeC----ch-hHHhhcCCCeE-Eec-CCCCCHHHHhcC-CCCeEEEEc
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF----FL-SMHSLYASYGT-SEQ-MIASDSNVITRA-NPMNLIIRF   85 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~-p~Lk~I~~~   85 (189)
                      +.|||||++.+..+..    .+.++...++++...    +. ++.+.++++|+ +.+ ..++++++|+++ |+||||++.
T Consensus        26 ~~~~kvlv~~~~~~~~----~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~  101 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPAI----EAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATL  101 (345)
T ss_dssp             -CCCEEEESSCCCHHH----HHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEES
T ss_pred             CCCCEEEEeCCCCHHH----HHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEc
Confidence            4579999999876543    234444334544322    23 67888999999 554 478999999997 799999999


Q ss_pred             CCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C-------CCCCCCCCCEEEE
Q 044056           86 RVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V-------PTGETLLGKTVFI  148 (189)
Q Consensus        86 ~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~-------~~~~~l~gktvGI  148 (189)
                      |+|+|+||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .       ..+.+|+||||||
T Consensus       102 ~~G~D~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGI  178 (345)
T 4g2n_A          102 SVGYDHIDMAAARSLGIKVLHTPDV---LSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGI  178 (345)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCSC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEE
T ss_pred             CCcccccCHHHHHhCCEEEEECCcc---cchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEE
Confidence            9999999999999999999999999   899999999999999999986          1       2368999999999


Q ss_pred             EcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          149 SGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       149 vG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ||+|+||+++|++|++|||+|++|||++.+
T Consensus       179 IGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  208 (345)
T 4g2n_A          179 FGMGRIGRAIATRARGFGLAIHYHNRTRLS  208 (345)
T ss_dssp             ESCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             EEeChhHHHHHHHHHHCCCEEEEECCCCcc
Confidence            999999999999999999999999998643

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=7.8e-36  Score=251.57  Aligned_cols=157  Identities=19%  Similarity=0.177  Sum_probs=130.8

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCch-h-HHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCCCCCcC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFL-S-MHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRFRVGLEGV   92 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~aG~d~i   92 (189)
                      ||||++.... +...++++.++.+ ++++...+. + ..+.++++|+ ++ ..+++++++|+++|+||||++.|+|+|||
T Consensus         1 Mkil~~~~~~-~~~p~~~e~l~~~-~~~~~~~~~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~i   78 (334)
T 3kb6_A            1 MNVLFTSVPQ-EDVPFYQEALKDL-SLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHI   78 (334)
T ss_dssp             -CEEECSCCT-THHHHHHHHTTTS-CEEECSSCGGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CEEEEeCCCc-ccCHHHHHHHHhC-CcEEEeCCcccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchh
Confidence            7899987553 3444566666553 344444332 2 2345778999 44 45789999999999999999999999999


Q ss_pred             ChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC---------------CCCCCCCCCCEEEEEcCCHHHHH
Q 044056           93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI---------------VPTGETLLGKTVFISGFGNIGVE  157 (189)
Q Consensus        93 d~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~---------------~~~~~~l~gktvGIvG~G~IG~~  157 (189)
                      |+++++++||.|+|+||+   ++++||||+++++|++.|++.               ...+.+|+||||||||+|+||++
T Consensus        79 d~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~  155 (334)
T 3kb6_A           79 DLDYCKKKGILVTHIPAY---SPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSR  155 (334)
T ss_dssp             CHHHHHHHTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHH
T ss_pred             cHHHHHHCCCEEEECCCc---CcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchHHHH
Confidence            999999999999999999   899999999999999999987               23568999999999999999999


Q ss_pred             HHHHHccCCCEEEEEcCCCCC
Q 044056          158 LAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       158 vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +|+++++|||+|++|||+.++
T Consensus       156 va~~~~~fg~~v~~~d~~~~~  176 (334)
T 3kb6_A          156 VAMYGLAFGMKVLCYDVVKRE  176 (334)
T ss_dssp             HHHHHHHTTCEEEEECSSCCH
T ss_pred             HHHhhcccCceeeecCCccch
Confidence            999999999999999998664

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=1.7e-35  Score=248.33  Aligned_cols=160  Identities=18%  Similarity=0.178  Sum_probs=133.8

Q ss_pred             CCCcceEEEeCCCCCCchhHHHHHh--hcccCceeeeCch--hHHhhcCCCeEEecCCCCCHHHHhcCCCCeEEEEcCCC
Q 044056           13 DKSITLVLFRGPHFPASHNYAKGYL--QNYLSIKGLCFFL--SMHSLYASYGTSEQMIASDSNVITRANPMNLIIRFRVG   88 (189)
Q Consensus        13 ~~~~~~ilv~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~--~~~~~~~~advi~~~~~~~~~~l~~~p~Lk~I~~~~aG   88 (189)
                      ++++|||+++.+..+.   + .+.|  +.+|++++.....  ++.+.++++|+++...++++++|+++|+||||++.|+|
T Consensus         2 ~~~~mkili~~~~~~~---~-~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~l~~~~~Lk~I~~~~~G   77 (324)
T 3hg7_A            2 SLSQRTLLLLSQDNAH---Y-ERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLSWFQSTYAG   77 (324)
T ss_dssp             --CCEEEEEESTTHHH---H-HHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEECHHHHGGGGGGCTTCCEEEESSSC
T ss_pred             CccccEEEEecCCCHH---H-HHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEECCCCCHHHHhhCCCceEEEECCCC
Confidence            4567999999887432   3 3444  4568888876543  67788999999443445667899999999999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------CCCCCCCCCCEEEEEcCCHHHH
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------VPTGETLLGKTVFISGFGNIGV  156 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~~~~~~l~gktvGIvG~G~IG~  156 (189)
                      +|+||.+++. +||.|+|+||+   ++++||||+++++|++.|+++            ...+.+|+|+||||||+|+||+
T Consensus        78 ~d~id~~~~~-~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~  153 (324)
T 3hg7_A           78 VDVLLDARCR-RDYQLTNVRGI---FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQ  153 (324)
T ss_dssp             CGGGSCTTSC-CSSEEECCCSC---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHH
T ss_pred             CCccChHHHh-CCEEEEECCCc---ChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHH
Confidence            9999998875 59999999999   899999999999999999987            3356899999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCCCcc
Q 044056          157 ELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       157 ~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      ++|+++++|||+|++|||++++..
T Consensus       154 ~vA~~l~~~G~~V~~~dr~~~~~~  177 (324)
T 3hg7_A          154 HIAHTGKHFGMKVLGVSRSGRERA  177 (324)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCCCT
T ss_pred             HHHHHHHhCCCEEEEEcCChHHhh
Confidence            999999999999999999875543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.4e-34  Score=249.33  Aligned_cols=158  Identities=20%  Similarity=0.182  Sum_probs=133.8

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhcc--cCceeeeC--ch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcC
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQNY--LSIKGLCF--FL-SMHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRFR   86 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~--~~~~~~~~--~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~   86 (189)
                      +.+||||++++..+..    .+.|+..  .++++...  ++ ++.+.++++|+ ++ ...++++++|+.+|+||+|++++
T Consensus        13 ~~~~kIl~~~~i~~~~----~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~~   88 (416)
T 3k5p_A           13 RDRINVLLLEGISQTA----VEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFS   88 (416)
T ss_dssp             GGGSCEEECSCCCHHH----HHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEECS
T ss_pred             CCCcEEEEECCCCHHH----HHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEECc
Confidence            4479999999876543    3445432  24443332  23 67888999999 44 34689999999999999999999


Q ss_pred             CCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCC
Q 044056           87 VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFG  152 (189)
Q Consensus        87 aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G  152 (189)
                      +|+||||+++++++||+|+|+||+   ++++||||+++++|++.|+++              ...+.+++||||||||+|
T Consensus        89 ~G~d~IDl~~a~~~GI~V~n~p~~---n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG  165 (416)
T 3k5p_A           89 VGTNQVELKAARKRGIPVFNAPFS---NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYG  165 (416)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCS
T ss_pred             cccCccCHHHHHhcCcEEEeCCCc---ccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeC
Confidence            999999999999999999999999   899999999999999999987              224689999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +||+.+|+++++|||+|++||++++.
T Consensus       166 ~IG~~vA~~l~~~G~~V~~yd~~~~~  191 (416)
T 3k5p_A          166 NIGSQVGNLAESLGMTVRYYDTSDKL  191 (416)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTCCC
T ss_pred             HHHHHHHHHHHHCCCEEEEECCcchh
Confidence            99999999999999999999998654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.8e-34  Score=242.92  Aligned_cols=155  Identities=18%  Similarity=0.120  Sum_probs=132.4

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeC----ch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF----FL-SMHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRFRVG   88 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~aG   88 (189)
                      +||||++.+..+..    .+.|+...++.+...    +. ++.+.++++|+ +. +..++++++|+.+|+||||++.|+|
T Consensus         2 ~~kvlv~~~~~~~~----~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G   77 (330)
T 4e5n_A            2 LPKLVITHRVHEEI----LQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKG   77 (330)
T ss_dssp             CCEEEECSCCCHHH----HHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSC
T ss_pred             CCEEEEecCCCHHH----HHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCc
Confidence            58999998875432    355555444443321    23 67788999999 55 5678999999999999999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------------CCCCCCCCCCEEEEEcCC
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------------VPTGETLLGKTVFISGFG  152 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------------~~~~~~l~gktvGIvG~G  152 (189)
                      +||||+++++++||.|+|+||+   ++++||||+++++|++.|+++                ...+.+|+|+||||||+|
T Consensus        78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G  154 (330)
T 4e5n_A           78 FDNFDVDACTARGVWLTFVPDL---LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG  154 (330)
T ss_dssp             CTTBCHHHHHHTTCEEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCS
T ss_pred             ccccCHHHHHhcCcEEEeCCCC---CchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeC
Confidence            9999999999999999999999   899999999999999999986                123678999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +||+++|+++++|||+|++|||++.
T Consensus       155 ~IG~~vA~~l~~~G~~V~~~d~~~~  179 (330)
T 4e5n_A          155 AIGLAMADRLQGWGATLQYHEAKAL  179 (330)
T ss_dssp             HHHHHHHHHTTTSCCEEEEECSSCC
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCC
Confidence            9999999999999999999999873

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.2e-34  Score=244.59  Aligned_cols=161  Identities=25%  Similarity=0.288  Sum_probs=129.9

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhcccCceeeeC--ch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCC
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF--FL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVG   88 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG   88 (189)
                      |.+++||++.+..+..    .+.|+...++.....  +. ++.+.++++|+ +++ ..++++++++++|+||||++.|+|
T Consensus        28 ~~~~~vl~~~~~~~~~----~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G  103 (340)
T 4dgs_A           28 NVKPDLLLVEPMMPFV----MDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVG  103 (340)
T ss_dssp             -----CEECSCCCHHH----HHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSC
T ss_pred             CCCCEEEEECCCCHHH----HHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCC
Confidence            4568899999876543    334444334433221  22 56666689999 553 468999999999999999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------C----CCCCCCCCCEEEEEcCC
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------V----PTGETLLGKTVFISGFG  152 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~----~~~~~l~gktvGIvG~G  152 (189)
                      +|+||+++++++||.|+|+||+   ++++||||+++++|++.|+++            .    +.+.+|+||||||||+|
T Consensus       104 ~d~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG  180 (340)
T 4dgs_A          104 TDKVDLARARRRNIDVTTTPGV---LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLG  180 (340)
T ss_dssp             CTTBCHHHHHHTTCEEECCCSS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCS
T ss_pred             ccccCHHHHHhCCEEEEECCCC---CcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCC
Confidence            9999999999999999999999   899999999999999999987            1    23579999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCCCccc
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWASHSQ  181 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~~~~~  181 (189)
                      +||+++|+++++|||+|++|||++.+..+
T Consensus       181 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~  209 (340)
T 4dgs_A          181 QIGRALASRAEAFGMSVRYWNRSTLSGVD  209 (340)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECSSCCTTSC
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCcccccC
Confidence            99999999999999999999998766433

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=5.3e-35  Score=245.49  Aligned_cols=157  Identities=20%  Similarity=0.273  Sum_probs=130.5

Q ss_pred             cceEEEeCCCCCCchhHHHHHh-hcccCceeeeCchhHHhhcCCCeE-EecCCCCCHHHH-hcCCCCeEEEEcCCCCCcC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYL-QNYLSIKGLCFFLSMHSLYASYGT-SEQMIASDSNVI-TRANPMNLIIRFRVGLEGV   92 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~adv-i~~~~~~~~~~l-~~~p~Lk~I~~~~aG~d~i   92 (189)
                      |||||++.+..+..    .+.| +.++++++...++...+.++++|+ +.+..++ +++| +.+|+||||++.|+|+|+|
T Consensus         1 m~kil~~~~~~~~~----~~~L~~~~~~~~~~~~~~~~~~~~~~ad~l~~~~~~~-~~~l~~~~~~Lk~I~~~~~G~d~i   75 (324)
T 3evt_A            1 MSLVLMAQATKPEQ----LQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPLL-KTILARPTNQLKFVQVISAGVDYL   75 (324)
T ss_dssp             -CEEEECSCCCHHH----HHHHHHHCTTCEEEETTSCCTTTGGGEEEEESCCTHH-HHHHHSTTCCCCEEECSSSCCTTS
T ss_pred             CcEEEEecCCCHHH----HHHHHhhCCCeEEecCCccChHHhCCcEEEEECCcCh-HHHHHhhCCCceEEEECCcccccc
Confidence            68999999876543    2334 345666665443223456778999 6665566 8889 7899999999999999999


Q ss_pred             ChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC-------------CC-CCCCCCCCEEEEEcCCHHHHHH
Q 044056           93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI-------------VP-TGETLLGKTVFISGFGNIGVEL  158 (189)
Q Consensus        93 d~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~-------------~~-~~~~l~gktvGIvG~G~IG~~v  158 (189)
                      |++++.++||.|+|+||+   ++++||||+++++|++.|+++             .. .+.+|+||||||||+|+||+++
T Consensus        76 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~v  152 (324)
T 3evt_A           76 PLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSL  152 (324)
T ss_dssp             CHHHHHHTTCEEECCTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHH
T ss_pred             CHHHHHHCCcEEEECCCc---CchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHH
Confidence            999999999999999998   899999999999999999975             11 4789999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCCCcc
Q 044056          159 AKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       159 A~~l~afG~~V~~~~r~~~~~~  180 (189)
                      |++|++|||+|++|||++++.+
T Consensus       153 A~~l~~~G~~V~~~dr~~~~~~  174 (324)
T 3evt_A          153 AAKASALGMHVIGVNTTGHPAD  174 (324)
T ss_dssp             HHHHHHTTCEEEEEESSCCCCT
T ss_pred             HHHHHhCCCEEEEECCCcchhH
Confidence            9999999999999999876543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=5e-34  Score=245.89  Aligned_cols=158  Identities=21%  Similarity=0.110  Sum_probs=131.4

Q ss_pred             CcceEEEeCCCCCCchhHHHHHhhcc-c-CceeeeC--ch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCC
Q 044056           15 SITLVLFRGPHFPASHNYAKGYLQNY-L-SIKGLCF--FL-SMHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRFRV   87 (189)
Q Consensus        15 ~~~~ilv~~~~~~~~~~~~~~~l~~~-~-~~~~~~~--~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~a   87 (189)
                      +||||+++++..+..    .+.|+.. . ++++...  +. ++.+.++++|+ ++ ..+++++++|+.+|+||||+++|+
T Consensus         3 ~~~kil~~~~~~~~~----~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~   78 (404)
T 1sc6_A            3 DKIKFLLVEGVHQKA----LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI   78 (404)
T ss_dssp             SSCCEEECSCCCHHH----HHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred             CceEEEEeCCCCHHH----HHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCc
Confidence            468999988764432    3444432 2 3443321  23 67788999999 44 346899999999999999999999


Q ss_pred             CCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCH
Q 044056           88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGN  153 (189)
Q Consensus        88 G~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~  153 (189)
                      |+||||+++++++||.|+|+||+   ++++||||+++++|++.|+++              ...+.+|+||||||||+|+
T Consensus        79 G~d~iD~~~a~~~GI~V~n~p~~---n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~  155 (404)
T 1sc6_A           79 GTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGH  155 (404)
T ss_dssp             CCTTBCHHHHHHTTCCEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSH
T ss_pred             ccCccCHHHHHhCCCEEEecCcc---cHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECH
Confidence            99999999999999999999999   999999999999999999987              1246799999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          154 IGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       154 IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ||+.+|+++++|||+|++|||++...
T Consensus       156 IG~~vA~~l~~~G~~V~~~d~~~~~~  181 (404)
T 1sc6_A          156 IGTQLGILAESLGMYVYFYDIENKLP  181 (404)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCchhc
Confidence            99999999999999999999986543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=2e-34  Score=243.51  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=131.9

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeCc----hhHHhhcCCCeE-Eec-CCCCCHH-HHhcCC--CCeEEEEcC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFF----LSMHSLYASYGT-SEQ-MIASDSN-VITRAN--PMNLIIRFR   86 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~adv-i~~-~~~~~~~-~l~~~p--~Lk~I~~~~   86 (189)
                      ||||+++... +...+++.++++.+ ++++...+    +++.+.++++|+ ++. ..+++++ +|+++|  +||||++.|
T Consensus         1 Mmki~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~   78 (343)
T 2yq5_A            1 MTKIAMYNVS-PIEVPYIEDWAKKN-DVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRI   78 (343)
T ss_dssp             -CEEEEESCC-GGGHHHHHHHHHHH-TCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESS
T ss_pred             CceEEEEecC-cccHHHHHHHHHhC-CeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECc
Confidence            6999999954 45556666766554 55554432    266788999999 554 5789999 999985  699999999


Q ss_pred             CCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------------CCCCCCCCCCEEEEEc
Q 044056           87 VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------------VPTGETLLGKTVFISG  150 (189)
Q Consensus        87 aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------------~~~~~~l~gktvGIvG  150 (189)
                      +|+|+||+++++++||.|+|+||+   ++++||||+++++|++.|+++                ...+.+|+||||||||
T Consensus        79 ~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiG  155 (343)
T 2yq5_A           79 VGFNTINFDWTKKYNLLVTNVPVY---SPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIG  155 (343)
T ss_dssp             SCCTTBCSSTTCC--CEEECCSCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEEC
T ss_pred             eeecccchhHHHhCCEEEEECCCC---CcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEe
Confidence            999999999999999999999999   889999999999999999875                1236789999999999


Q ss_pred             CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          151 FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       151 ~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +|+||+.+|+++++|||+|++|||++++
T Consensus       156 lG~IG~~vA~~l~~~G~~V~~~d~~~~~  183 (343)
T 2yq5_A          156 VGHIGSAVAEIFSAMGAKVIAYDVAYNP  183 (343)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCG
T ss_pred             cCHHHHHHHHHHhhCCCEEEEECCChhh
Confidence            9999999999999999999999999764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.7e-33  Score=237.32  Aligned_cols=159  Identities=13%  Similarity=0.124  Sum_probs=131.0

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeCc---h-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCC--CeEEEEcCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFF---L-SMHSLYASYGT-SEQ-MIASDSNVITRANP--MNLIIRFRV   87 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~--Lk~I~~~~a   87 (189)
                      ||||+++... +...+++..+.+.+|++++...+   . ++.+.++++|+ +++ ..++++++++++|+  ||||++.|+
T Consensus         1 mmkil~~~~~-~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (333)
T 1j4a_A            1 MTKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV   79 (333)
T ss_dssp             -CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             CcEEEEEecC-ccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCc
Confidence            4789887653 22233333433445566664432   2 56677899999 654 46899999999987  999999999


Q ss_pred             CCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCH
Q 044056           88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGN  153 (189)
Q Consensus        88 G~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~  153 (189)
                      |+||||+++++++||.|+|+||+   ++++||||+++++|++.|+++              ...+.++.|+||||||+|+
T Consensus        80 G~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~  156 (333)
T 1j4a_A           80 GVDNIDMAKAKELGFQITNVPVY---SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGH  156 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSH
T ss_pred             ccccccHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCH
Confidence            99999999999999999999998   889999999999999999987              1245789999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          154 IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       154 IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ||+.+|+++++|||+|++|||+..+
T Consensus       157 IG~~~A~~l~~~G~~V~~~d~~~~~  181 (333)
T 1j4a_A          157 IGQVFMQIMEGFGAKVITYDIFRNP  181 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcch
Confidence            9999999999999999999998764

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=236.07  Aligned_cols=157  Identities=25%  Similarity=0.298  Sum_probs=129.8

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCC
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRV   87 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~a   87 (189)
                      +.|++|+++++..+.    ..+.++.. ++++...   +. ++.+.++++|+ +++ ..++++++++++|+||||++.|+
T Consensus        24 ~~~~~vli~~~~~~~----~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~   98 (335)
T 2g76_A           24 ANLRKVLISDSLDPC----CRKILQDG-GLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGT   98 (335)
T ss_dssp             --CCEEEECSCCCHH----HHHHHHHH-TCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSS
T ss_pred             ccceEEEEcCCCCHH----HHHHHHhC-CCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCC
Confidence            456789988775433    23444443 2333322   23 67788899999 554 35799999999999999999999


Q ss_pred             CCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C----CCCCCCCCCEEEEEcCCH
Q 044056           88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V----PTGETLLGKTVFISGFGN  153 (189)
Q Consensus        88 G~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~----~~~~~l~gktvGIvG~G~  153 (189)
                      |+|+||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .    ..+.++.|+||||||+|.
T Consensus        99 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~  175 (335)
T 2g76_A           99 GVDNVDLEAATRKGILVMNTPNG---NSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGR  175 (335)
T ss_dssp             SCTTBCHHHHHHHTCEEECCSST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSH
T ss_pred             CcchhChHHHHhCCeEEEECCCc---cchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECH
Confidence            99999999999999999999998   899999999999999999986          1    235799999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          154 IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       154 IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ||+.+|+++++|||+|++|||+..+
T Consensus       176 IG~~vA~~l~~~G~~V~~~d~~~~~  200 (335)
T 2g76_A          176 IGREVATRMQSFGMKTIGYDPIISP  200 (335)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSSCH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcch
Confidence            9999999999999999999998654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=5e-33  Score=232.07  Aligned_cols=155  Identities=25%  Similarity=0.294  Sum_probs=129.7

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-EecCC-CCCHHHHhcCCCCeEEEEcCCCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SEQMI-ASDSNVITRANPMNLIIRFRVGL   89 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~~~~-~~~~~~l~~~p~Lk~I~~~~aG~   89 (189)
                      ||||+++++..+..    .+.++.. ++++...   +. ++.+.++++|+ +++.. ++++++++++|+||||++.|+|+
T Consensus         3 ~~~il~~~~~~~~~----~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   77 (307)
T 1wwk_A            3 RMKVLVAAPLHEKA----IQVLKDA-GLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGL   77 (307)
T ss_dssp             -CEEEECSCCCHHH----HHHHHHT-TCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCC
T ss_pred             ceEEEEeCCCCHHH----HHHHHhC-CeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence            58999988653322    3444442 4454332   23 67788899999 55543 69999999999999999999999


Q ss_pred             CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C----CCCCCCCCCEEEEEcCCHHH
Q 044056           90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V----PTGETLLGKTVFISGFGNIG  155 (189)
Q Consensus        90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~----~~~~~l~gktvGIvG~G~IG  155 (189)
                      |+||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .    ..+.++.|+||||||+|+||
T Consensus        78 d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           78 DNIDVEAAKEKGIEVVNAPAA---SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             TTBCHHHHHHHTCEEECCGGG---GHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHH
T ss_pred             cccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHH
Confidence            999999999999999999999   899999999999999999986          1    34579999999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCCCC
Q 044056          156 VELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       156 ~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.+|+++++|||+|++|||++.+
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~  177 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNE  177 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCH
T ss_pred             HHHHHHHHHCCCEEEEECCCCCh
Confidence            99999999999999999998764

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=4.5e-33  Score=236.82  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=125.0

Q ss_pred             CcceEEEeCCCCCCc----hhHHHHHhhcccCceeeeC-ch-hHH-hhcCCCeEEecCCCCCHHHHhcCCCCeEEEEc-C
Q 044056           15 SITLVLFRGPHFPAS----HNYAKGYLQNYLSIKGLCF-FL-SMH-SLYASYGTSEQMIASDSNVITRANPMNLIIRF-R   86 (189)
Q Consensus        15 ~~~~ilv~~~~~~~~----~~~~~~~l~~~~~~~~~~~-~~-~~~-~~~~~advi~~~~~~~~~~l~~~p~Lk~I~~~-~   86 (189)
                      ..++++++.+.....    .+...+.|+...++..... +. ++. +.+.++|+++...++++++|+++|+||||++. +
T Consensus        26 ~~r~ivll~~~~~~~~~~~~~~~~~~L~~~~~v~~~~~~~~~e~~~~~~~~~~~i~~~~~i~~~~l~~~p~Lk~I~~~~~  105 (365)
T 4hy3_A           26 TERPLAISAPEPRSLDLIFSDEARAALHSKYEIVEADPENIAGLGDDILGRARYIIGQPPLSAETLARMPALRSILNVES  105 (365)
T ss_dssp             --CCEEEEECTTSCHHHHCCHHHHHHHHHHSEEEECCGGGGGGSCTTHHHHEEEEEECCCCCHHHHTTCTTCCEEECCSS
T ss_pred             CCCCEEEEcCCcccccccCCHHHHHHHhCCcEEEECCCCChHHHHHHhhCCeEEEEeCCCCCHHHHhhCCCCeEEEEecc
Confidence            345777777664321    1122344544433332111 11 332 33456777556679999999999999999975 8


Q ss_pred             CCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC---------C--------CCCCCCCCCEEEEE
Q 044056           87 VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI---------V--------PTGETLLGKTVFIS  149 (189)
Q Consensus        87 aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~---------~--------~~~~~l~gktvGIv  149 (189)
                      +|+|+||+++++++||.|+|+||+   ++++||||+++++|++.|+++         .        ..+.+|+|||||||
T Consensus       106 ~G~d~iD~~~a~~~GI~V~n~~~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGII  182 (365)
T 4hy3_A          106 NLLNNMPYEVLFQRGIHVVTTGQV---FAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIV  182 (365)
T ss_dssp             SCCSCSCTTHHHHSCCEEEECGGG---GHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEE
T ss_pred             cccCcccHHHHhcCCeEEEeCCCc---cchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEe
Confidence            999999999999999999999999   899999999999999999997         1        24579999999999


Q ss_pred             cCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          150 GFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       150 G~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |+|+||+.+|+++++|||+|++|||+.++
T Consensus       183 GlG~IG~~vA~~l~~fG~~V~~~d~~~~~  211 (365)
T 4hy3_A          183 GFGDLGKALRRVLSGFRARIRVFDPWLPR  211 (365)
T ss_dssp             CCSHHHHHHHHHHTTSCCEEEEECSSSCH
T ss_pred             cCCcccHHHHHhhhhCCCEEEEECCCCCH
Confidence            99999999999999999999999998643

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.9e-32  Score=229.73  Aligned_cols=156  Identities=26%  Similarity=0.276  Sum_probs=129.9

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeC----ch-hHHhhcCCCeE-EecC-CCCCHHHHhcCCC-CeEEEEcCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF----FL-SMHSLYASYGT-SEQM-IASDSNVITRANP-MNLIIRFRV   87 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~~~~~~~adv-i~~~-~~~~~~~l~~~p~-Lk~I~~~~a   87 (189)
                      |++|+++.+..+.    ..+.++...++++...    +. ++.+.++++|+ +++. .++++++++++|+ ||||++.|+
T Consensus         1 m~~vl~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~   76 (320)
T 1gdh_A            1 KKKILITWPLPEA----AMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (320)
T ss_dssp             CCEEEESSCCCHH----HHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CcEEEEcCCCCHH----HHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCc
Confidence            4688888765332    2344544335554332    22 67788899999 5544 5899999999999 999999999


Q ss_pred             CCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C-------CCCCCCCCCEEEEEc
Q 044056           88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V-------PTGETLLGKTVFISG  150 (189)
Q Consensus        88 G~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~-------~~~~~l~gktvGIvG  150 (189)
                      |+||||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .       ..+.++.|+||||||
T Consensus        77 G~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG  153 (320)
T 1gdh_A           77 GFDHIDLDACKARGIKVGNAPHG---VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYG  153 (320)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEEC
T ss_pred             ccccccHHHHHhCCcEEEEcCCC---CHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEEC
Confidence            99999999999999999999999   899999999999999999986          1       135689999999999


Q ss_pred             CCHHHHHHHHHHccCCCEEEEEcC-CCCC
Q 044056          151 FGNIGVELAKRLRPFGVKIIAAKR-SWAS  178 (189)
Q Consensus       151 ~G~IG~~vA~~l~afG~~V~~~~r-~~~~  178 (189)
                      +|+||+.+|+++++|||+|++||| ++.+
T Consensus       154 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~  182 (320)
T 1gdh_A          154 FGSIGQALAKRAQGFDMDIDYFDTHRASS  182 (320)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSCCCH
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCcCh
Confidence            999999999999999999999999 7654

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.4e-32  Score=231.70  Aligned_cols=163  Identities=21%  Similarity=0.240  Sum_probs=130.3

Q ss_pred             CCCCcceEEEeCCCCCCchhHHHHHhhcccCceeeeC--ch-h-HHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEc
Q 044056           12 SDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF--FL-S-MHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRF   85 (189)
Q Consensus        12 ~~~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~-~-~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~   85 (189)
                      +.|++++|+++++..+.    ..+.++...++.....  +. + +.+.++++|+ ++ +..++++++++++|+||||++.
T Consensus        19 ~~m~~~~vl~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~   94 (333)
T 3ba1_A           19 SHMEAIGVLMMCPMSTY----LEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSF   94 (333)
T ss_dssp             ---CCCEEEECSCCCHH----HHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEES
T ss_pred             ccCCCCEEEEeCCCCHH----HHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEc
Confidence            33556789998765432    2334443323332211  12 3 5566789999 54 3467999999999999999999


Q ss_pred             CCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C-----CCCCCCCCCEEEEEc
Q 044056           86 RVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V-----PTGETLLGKTVFISG  150 (189)
Q Consensus        86 ~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~-----~~~~~l~gktvGIvG  150 (189)
                      |+|+|+||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .     ..+.+++|+||||||
T Consensus        95 ~~G~d~id~~~~~~~gI~v~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG  171 (333)
T 3ba1_A           95 SVGLDKVDLIKCEEKGVRVTNTPDV---LTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIG  171 (333)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEEC
T ss_pred             CccccccCHHHHHhCCcEEEECCCc---chHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEEC
Confidence            9999999999999999999999999   899999999999999999987          1     235799999999999


Q ss_pred             CCHHHHHHHHHHccCCCEEEEEcCCCCCccc
Q 044056          151 FGNIGVELAKRLRPFGVKIIAAKRSWASHSQ  181 (189)
Q Consensus       151 ~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~  181 (189)
                      +|+||+++|+++++|||+|++|||++.+..+
T Consensus       172 ~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~g  202 (333)
T 3ba1_A          172 LGRIGLAVAERAEAFDCPISYFSRSKKPNTN  202 (333)
T ss_dssp             CSHHHHHHHHHHHTTTCCEEEECSSCCTTCC
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCchhccC
Confidence            9999999999999999999999998766433

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.6e-32  Score=231.35  Aligned_cols=158  Identities=19%  Similarity=0.215  Sum_probs=128.7

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCc---h-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCC--CeEEEEcCCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFF---L-SMHSLYASYGT-SEQ-MIASDSNVITRANP--MNLIIRFRVG   88 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~--Lk~I~~~~aG   88 (189)
                      |||+++.... ....++..+.+.+ ++++...+   . ++.+.++++|+ +++ ..++++++++++|+  ||||++.|+|
T Consensus         1 Mkil~~~~~~-~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   78 (333)
T 1dxy_A            1 MKIIAYGARV-DEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (333)
T ss_dssp             CEEEECSCCT-TTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEeccc-cCHHHHHHHHHhC-CeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcc
Confidence            5788875432 2233333333333 44443322   2 56677899999 554 46899999999987  9999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC---------------CCCCCCCCCCEEEEEcCCH
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI---------------VPTGETLLGKTVFISGFGN  153 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~---------------~~~~~~l~gktvGIvG~G~  153 (189)
                      +||||+++++++||.|+|+||+   ++++||||+++++|++.|+++               ...+.++.|+||||||+|+
T Consensus        79 ~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~  155 (333)
T 1dxy_A           79 TDNIDMTAMKQYGIRLSNVPAY---SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH  155 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSH
T ss_pred             cCccCHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCH
Confidence            9999999999999999999998   889999999999999999986               1245799999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          154 IGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       154 IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ||+.+|+++++|||+|++|||+..+.
T Consensus       156 IG~~~A~~l~~~G~~V~~~d~~~~~~  181 (333)
T 1dxy_A          156 IGQVAIKLFKGFGAKVIAYDPYPMKG  181 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh
Confidence            99999999999999999999987653

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=2.5e-32  Score=228.26  Aligned_cols=156  Identities=22%  Similarity=0.273  Sum_probs=129.4

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcc-cCceeeeC---ch-hHHhhcCCCeE-EecC-CCCCHHHHhcCCCCeEEEEcCCCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNY-LSIKGLCF---FL-SMHSLYASYGT-SEQM-IASDSNVITRANPMNLIIRFRVGL   89 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~-~~~~~~~~---~~-~~~~~~~~adv-i~~~-~~~~~~~l~~~p~Lk~I~~~~aG~   89 (189)
                      |||+++.+..+...    +.++.. .++++...   +. ++.+.++++|+ +.+. .++++++++++|+||||++.|+|+
T Consensus         1 ~~vl~~~~~~~~~~----~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   76 (311)
T 2cuk_A            1 MRVLVTRTLPGKAL----DRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGV   76 (311)
T ss_dssp             CEEEESSCCSSSTT----HHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCC
T ss_pred             CEEEEeCCCCHHHH----HHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCc
Confidence            57888877654432    333332 24433322   22 67788899999 5443 479999999999999999999999


Q ss_pred             CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C-------CCCCCCCCCEEEEEcCC
Q 044056           90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V-------PTGETLLGKTVFISGFG  152 (189)
Q Consensus        90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~-------~~~~~l~gktvGIvG~G  152 (189)
                      ||||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .       ..+.++.|+||||||+|
T Consensus        77 d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  153 (311)
T 2cuk_A           77 DHVDLEAARERGIRVTHTPGV---LTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMG  153 (311)
T ss_dssp             TTBCHHHHHTTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             cccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEEC
Confidence            999999999999999999999   899999999999999999986          1       12578999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +||+.+|+++++|||+|++|||+..+.
T Consensus       154 ~IG~~~A~~l~~~G~~V~~~d~~~~~~  180 (311)
T 2cuk_A          154 RIGQAVAKRALAFGMRVVYHARTPKPL  180 (311)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCccc
Confidence            999999999999999999999987654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.2e-32  Score=227.75  Aligned_cols=155  Identities=24%  Similarity=0.302  Sum_probs=130.2

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeC---ch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCCCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRFRVGL   89 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~aG~   89 (189)
                      +|||+++++..+.    ..+.++.. ++++...   +. ++.+.++++|+ ++ +..++++++++++|+||||++.|+|+
T Consensus         5 ~mkil~~~~~~~~----~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   79 (313)
T 2ekl_A            5 TVKALITDPIDEI----LIKTLREK-GIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGL   79 (313)
T ss_dssp             CCEEEECSCCCHH----HHHHHHHT-TCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCC
T ss_pred             ceEEEEECCCCHH----HHHHHHhC-CcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCC
Confidence            4789998865332    23444442 3444322   23 67788899999 55 35679999999999999999999999


Q ss_pred             CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------CCCCCCCCCCEEEEEcCCHHHHH
Q 044056           90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVE  157 (189)
Q Consensus        90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~~~~~~l~gktvGIvG~G~IG~~  157 (189)
                      |++|+++++++||.|+|+||+   ++++||||+++++|++.|+++            ...+.++.|+||||||+|+||+.
T Consensus        80 d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~  156 (313)
T 2ekl_A           80 DNIDTEEAEKRNIKVVYAPGA---STDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTK  156 (313)
T ss_dssp             TTBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHH
T ss_pred             CccCHHHHHhCCeEEEeCCCC---CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHH
Confidence            999999999999999999999   899999999999999999987            23467999999999999999999


Q ss_pred             HHHHHccCCCEEEEEcCCCCC
Q 044056          158 LAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       158 vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +|+++++|||+|++|||++++
T Consensus       157 ~A~~l~~~G~~V~~~d~~~~~  177 (313)
T 2ekl_A          157 VGIIANAMGMKVLAYDILDIR  177 (313)
T ss_dssp             HHHHHHHTTCEEEEECSSCCH
T ss_pred             HHHHHHHCCCEEEEECCCcch
Confidence            999999999999999998764

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=2.1e-32  Score=228.99  Aligned_cols=157  Identities=15%  Similarity=0.192  Sum_probs=130.2

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcC-C-
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGV-D-   93 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~i-d-   93 (189)
                      |||+++.+.. ...+|..++.+.+|++++..++.+   ..+++|+ +++.  +++++++. |+||||++.|+|+||| | 
T Consensus         4 mkil~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~---~~~~ad~~i~~~--~~~~~l~~-~~Lk~I~~~~aG~d~i~d~   76 (315)
T 3pp8_A            4 MEIIFYHPTF-NAAWWVNALEKALPHARVREWKVG---DNNPADYALVWQ--PPVEMLAG-RRLKAVFVLGAGVDAILSK   76 (315)
T ss_dssp             EEEEEECSSS-CHHHHHHHHHHHSTTEEEEECCTT---CCSCCSEEEESS--CCHHHHTT-CCCSEEEESSSCCHHHHHH
T ss_pred             eEEEEEcCCC-chHHHHHHHHHHCCCCEEEecCCC---CccCcEEEEECC--CCHHHhCC-CCceEEEECCEecccccch
Confidence            8999988764 334566666677889888766532   3468998 6654  68999999 9999999999999999 7 


Q ss_pred             hhH---HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------CCCCCCCCCCEEEEEcCCHHHHHH
Q 044056           94 IDA---LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVEL  158 (189)
Q Consensus        94 ~~~---~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~~~~~~l~gktvGIvG~G~IG~~v  158 (189)
                      +++   +.++||+|+|++++  +++++||||+++++|++.|+++            ...+.+++|+||||||+|+||+++
T Consensus        77 ~~a~~~~~~~gi~v~~~~~~--~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~~v  154 (315)
T 3pp8_A           77 LNAHPEMLDASIPLFRLEDT--GMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKV  154 (315)
T ss_dssp             HHHCTTSSCTTSCEEEC--C--CCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHHHH
T ss_pred             hhhhhhhhcCCCEEEEcCCC--CccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHHHH
Confidence            876   78899999999987  3579999999999999999987            235689999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCCCcccc
Q 044056          159 AKRLRPFGVKIIAAKRSWASHSQV  182 (189)
Q Consensus       159 A~~l~afG~~V~~~~r~~~~~~~~  182 (189)
                      |+++++|||+|++|||++++.++.
T Consensus       155 A~~l~~~G~~V~~~dr~~~~~~~~  178 (315)
T 3pp8_A          155 AESLQAWGFPLRCWSRSRKSWPGV  178 (315)
T ss_dssp             HHHHHTTTCCEEEEESSCCCCTTC
T ss_pred             HHHHHHCCCEEEEEcCCchhhhhh
Confidence            999999999999999988765443

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.98  E-value=1.6e-32  Score=234.13  Aligned_cols=150  Identities=19%  Similarity=0.228  Sum_probs=125.7

Q ss_pred             CcceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcC
Q 044056           15 SITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGV   92 (189)
Q Consensus        15 ~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~i   92 (189)
                      .||||++.+..+ .    ..++++.+.++.+........+.++++|+ +++ .+++++++++ .++||||++.++|+|||
T Consensus         2 ~mmkIl~~~~~p-~----~~~~~~~~~~v~~~~~~~~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~i   75 (381)
T 3oet_A            2 NAMKILVDENMP-Y----ARELFSRLGEVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHV   75 (381)
T ss_dssp             CCCEEEEETTST-T----HHHHHTTSSEEEEECC---CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTB
T ss_pred             CceEEEECCCCc-H----HHHHHhhCCcEEEeCCCCCCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEcccccccc
Confidence            369999987763 2    34666666555544322222456899999 665 3579999999 67799999999999999


Q ss_pred             ChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE
Q 044056           93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus        93 d~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~  172 (189)
                      |++++.++||.|+|+||+   ++.+||||+++++|++.|+    .+.+++||||||||+|+||+.+|+++++|||+|++|
T Consensus        76 D~~~~~~~gI~v~n~pg~---~~~~VAE~~l~~lL~l~r~----~g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~  148 (381)
T 3oet_A           76 DEAWLKQAGIGFSAAPGC---NAIAVVEYVFSALLMLAER----DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC  148 (381)
T ss_dssp             CHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHH----TTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHhCCEEEEECCCc---CcchhHHHHHHHHHHHHHh----cCCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEE
Confidence            999999999999999999   9999999999999999998    468999999999999999999999999999999999


Q ss_pred             cCCCC
Q 044056          173 KRSWA  177 (189)
Q Consensus       173 ~r~~~  177 (189)
                      ||+..
T Consensus       149 d~~~~  153 (381)
T 3oet_A          149 DPPRA  153 (381)
T ss_dssp             CHHHH
T ss_pred             CCChH
Confidence            98643

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.98  E-value=7.4e-32  Score=228.54  Aligned_cols=125  Identities=24%  Similarity=0.361  Sum_probs=114.4

Q ss_pred             hHHhhcCCCeE-EecC---CCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHH
Q 044056           51 SMHSLYASYGT-SEQM---IASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLM  126 (189)
Q Consensus        51 ~~~~~~~~adv-i~~~---~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~li  126 (189)
                      ++.+.++++|+ +...   .++++++++++|+||||++.|+|+||||++++.++||.|+|+||+   ++.+||||+++++
T Consensus        55 ~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~---~~~~vAE~~~~l~  131 (351)
T 3jtm_A           55 ELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGS---NVVSVAEDELMRI  131 (351)
T ss_dssp             HHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEEECCCc---CchHHHHHHHHHH
Confidence            67888999999 5532   358999999999999999999999999999999999999999999   8999999999999


Q ss_pred             HHHHhcCC----------C------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          127 LGLLRKHI----------V------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       127 L~~~R~~~----------~------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |++.|++.          .      ..+.+|+|+||||||+|+||+.+|++|++|||+|++|||++.+
T Consensus       132 L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~  199 (351)
T 3jtm_A          132 LILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA  199 (351)
T ss_dssp             HHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCC
T ss_pred             HHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccC
Confidence            99999987          1      2467999999999999999999999999999999999998643

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.98  E-value=8.7e-32  Score=228.24  Aligned_cols=156  Identities=19%  Similarity=0.182  Sum_probs=127.8

Q ss_pred             ceEEEeCCCCCCchhH-HHHHhhcccCceeeeC---ch-hHHhhcCCCeE-Eec--CCCCCHHHHhcCCCCeEEEEcCCC
Q 044056           17 TLVLFRGPHFPASHNY-AKGYLQNYLSIKGLCF---FL-SMHSLYASYGT-SEQ--MIASDSNVITRANPMNLIIRFRVG   88 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~-~~~~l~~~~~~~~~~~---~~-~~~~~~~~adv-i~~--~~~~~~~~l~~~p~Lk~I~~~~aG   88 (189)
                      |||++++......... ..+.++. .++++...   +. ++.+.++++|+ +++  ..++++++++++|+||+|++.|+|
T Consensus         3 mki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~G   81 (352)
T 3gg9_A            3 LKIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGRV   81 (352)
T ss_dssp             CEEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSCC
T ss_pred             eEEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCcc
Confidence            8999998875432110 0122333 23444332   22 67888999999 553  478999999999999999999999


Q ss_pred             C----CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------C------------CCCCC
Q 044056           89 L----EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------V------------PTGET  140 (189)
Q Consensus        89 ~----d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~------------~~~~~  140 (189)
                      +    |+||+++++++||.|+|+||+ +   ++||||+++++|++.|+++            .            ..+.+
T Consensus        82 ~~~~~d~id~~~a~~~gI~V~n~pg~-~---~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~  157 (352)
T 3gg9_A           82 SRDAGGHIDLEACTDKGVVVLEGKGS-P---VAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRV  157 (352)
T ss_dssp             CCSSSCSBCHHHHHHHTCEEECCCCC-S---HHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCC
T ss_pred             cCCccCcccHHHHHhCCeEEEECCCC-c---HHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCcc
Confidence            9    999999999999999999997 3   8999999999999999987            1            13679


Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      |+||||||||+|.||+++|+++++|||+|++|||+.+
T Consensus       158 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  194 (352)
T 3gg9_A          158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS  194 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            9999999999999999999999999999999999853

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.98  E-value=7.6e-32  Score=227.02  Aligned_cols=158  Identities=15%  Similarity=0.140  Sum_probs=128.6

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeC----ch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCC--CeEEEEcCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF----FL-SMHSLYASYGT-SEQ-MIASDSNVITRANP--MNLIIRFRV   87 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~--Lk~I~~~~a   87 (189)
                      |||+++.... ...+++..+.+.+ ++++...    +. ++.+.++++|+ +++ ..++++++++++|+  ||||++.|+
T Consensus         1 mki~~~~~~~-~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (331)
T 1xdw_A            1 MKVLCYGVRD-VELPIFEACNKEF-GYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTA   78 (331)
T ss_dssp             CEEEECSCCT-TTHHHHHHHGGGT-CCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSS
T ss_pred             CEEEEEecCc-cCHHHHHHHHHhc-CeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccc
Confidence            5888875432 2223333333333 4444332    22 56788899999 554 46899999999998  999999999


Q ss_pred             CCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C-----CCCCCCCCCEEEEEcCC
Q 044056           88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V-----PTGETLLGKTVFISGFG  152 (189)
Q Consensus        88 G~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~-----~~~~~l~gktvGIvG~G  152 (189)
                      |+||||+++++++||.|+|+||+   ++++||||+++++|++.|+++          .     ..+.++.|+||||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G  155 (331)
T 1xdw_A           79 GTDHIDKEYAKELGFPMAFVPRY---SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLG  155 (331)
T ss_dssp             CCTTBCHHHHHHTTCCEECCCCC---CHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCS
T ss_pred             cccccCHHHHHhCCcEEEeCCCC---CcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcC
Confidence            99999999999999999999999   889999999999999999886          1     13468999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +||+.+|+++++|||+|++|||+..+.
T Consensus       156 ~IG~~~A~~l~~~G~~V~~~d~~~~~~  182 (331)
T 1xdw_A          156 RIGRVAAQIFHGMGATVIGEDVFEIKG  182 (331)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCccHH
Confidence            999999999999999999999987653

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.97  E-value=1.7e-31  Score=237.30  Aligned_cols=157  Identities=24%  Similarity=0.316  Sum_probs=131.6

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhcccCceeeeC-ch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCC
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF-FL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGL   89 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~   89 (189)
                      |++|+|+++++..+..    .+.|+...++++... +. ++.+.++++|+ +++ .+++++++++++|+||||++.|+|+
T Consensus         2 m~~~~vl~~~~~~~~~----~~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   77 (529)
T 1ygy_A            2 VSLPVVLIADKLAPST----VAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGL   77 (529)
T ss_dssp             -CCCEEEECSSCCGGG----GTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCC
T ss_pred             CCCcEEEEeCCCCHHH----HHHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCc
Confidence            4568999988765432    234444333433332 23 67788999999 553 4689999999999999999999999


Q ss_pred             CcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C----CCCCCCCCCEEEEEcCCHHH
Q 044056           90 EGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V----PTGETLLGKTVFISGFGNIG  155 (189)
Q Consensus        90 d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~----~~~~~l~gktvGIvG~G~IG  155 (189)
                      ||+|+++++++||.|+|+||+   ++.+||||+++++|++.|+++          +    ..+.+|+|+||||||+|+||
T Consensus        78 d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG  154 (529)
T 1ygy_A           78 DNVDVDAATARGVLVVNAPTS---NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIG  154 (529)
T ss_dssp             TTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHH
T ss_pred             CccCHhHHHhCCeEEEECCCc---chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHH
Confidence            999999999999999999998   999999999999999999987          1    23679999999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCCC
Q 044056          156 VELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       156 ~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.+|++|++|||+|++|||+..
T Consensus       155 ~~vA~~l~~~G~~V~~~d~~~~  176 (529)
T 1ygy_A          155 QLVAQRIAAFGAYVVAYDPYVS  176 (529)
T ss_dssp             HHHHHHHHTTTCEEEEECTTSC
T ss_pred             HHHHHHHHhCCCEEEEECCCCC
Confidence            9999999999999999999864

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.97  E-value=2.9e-31  Score=227.71  Aligned_cols=125  Identities=21%  Similarity=0.270  Sum_probs=114.0

Q ss_pred             hHHhhcCCCeE-Eec---CCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHH
Q 044056           51 SMHSLYASYGT-SEQ---MIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLM  126 (189)
Q Consensus        51 ~~~~~~~~adv-i~~---~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~li  126 (189)
                      ++.+.++++|+ +..   ..++++++|+++|+||||++.++|+||||+++++++||.|+|+||+   ++++||||+++++
T Consensus        82 ~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~---~~~~VAE~al~li  158 (393)
T 2nac_A           82 VFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYC---NSISVAEHVVMMI  158 (393)
T ss_dssp             HHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHHHH
T ss_pred             HHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCc---ccHHHHHHHHHHH
Confidence            57788999999 543   3479999999999999999999999999999999999999999998   8999999999999


Q ss_pred             HHHHhcCC----------C------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          127 LGLLRKHI----------V------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       127 L~~~R~~~----------~------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |++.|++.          .      ..+.+|+|+||||||+|+||+++|+++++|||+|++|||+..+
T Consensus       159 L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~  226 (393)
T 2nac_A          159 LSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP  226 (393)
T ss_dssp             HHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCC
T ss_pred             HHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence            99999985          1      2357899999999999999999999999999999999998644

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.97  E-value=5.4e-31  Score=223.18  Aligned_cols=160  Identities=16%  Similarity=0.237  Sum_probs=127.7

Q ss_pred             CcceEEEeCCCCCCchhHHHHHhhcccCceeeeC-ch-hHHhhcC-----CCeE-Eec-------CCCCCHHHHhcCC-C
Q 044056           15 SITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF-FL-SMHSLYA-----SYGT-SEQ-------MIASDSNVITRAN-P   78 (189)
Q Consensus        15 ~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~-----~adv-i~~-------~~~~~~~~l~~~p-~   78 (189)
                      .|++|+++++....... ..+.++...++.+... +. ++.+.++     ++|+ +..       ..++++++|+.+| +
T Consensus         2 ~~~~vl~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~   80 (348)
T 2w2k_A            2 PRPRVLLLGDPARHLDD-LWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSS   80 (348)
T ss_dssp             CCCEEEECSSCCSSCHH-HHHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTT
T ss_pred             CCcEEEEECCccccChH-HHHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccC
Confidence            46799999873222111 2233443334433222 23 6666665     7888 442       3589999999998 6


Q ss_pred             CeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC---------C------------CC
Q 044056           79 MNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI---------V------------PT  137 (189)
Q Consensus        79 Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~---------~------------~~  137 (189)
                      ||||++.++|+|+||+++++++||.|+|+||+   ++++||||+++++|++.|+++         .            ..
T Consensus        81 Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~  157 (348)
T 2w2k_A           81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGA---GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKS  157 (348)
T ss_dssp             CCEEEESSSCCTTBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred             ceEEEECCccccccCHHHHHhCCcEEEECCCC---CcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccccccc
Confidence            99999999999999999999999999999999   889999999999999999986         2            13


Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~  178 (189)
                      +.+|+|+||||||+|+||+.+|++++ +|||+|++|||+...
T Consensus       158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~  199 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD  199 (348)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCC
T ss_pred             CcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcc
Confidence            57899999999999999999999999 999999999998754

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.97  E-value=3.5e-31  Score=222.85  Aligned_cols=156  Identities=21%  Similarity=0.212  Sum_probs=128.0

Q ss_pred             CcceEEEeCCCCCCchhHHHHHhhcccCceeeeC------ch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcC-CCCeEEEE
Q 044056           15 SITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF------FL-SMHSLYASYGT-SE-QMIASDSNVITRA-NPMNLIIR   84 (189)
Q Consensus        15 ~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~-p~Lk~I~~   84 (189)
                      .+|+|+++.+..+.    ..+.++...++++..+      +. ++.+.++++|+ ++ +..++++++++++ |+||||++
T Consensus         7 ~~~~il~~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~   82 (330)
T 2gcg_A            7 RLMKVFVTRRIPAE----GRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIST   82 (330)
T ss_dssp             CCEEEEESSCCCHH----HHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEE
T ss_pred             CCCEEEEECCCCHH----HHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEE
Confidence            45789988754322    2344443322333221      22 67778899999 55 3468999999999 99999999


Q ss_pred             cCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C-------CCCCCCCCCEEE
Q 044056           85 FRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V-------PTGETLLGKTVF  147 (189)
Q Consensus        85 ~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~-------~~~~~l~gktvG  147 (189)
                      .++|+|++|+++++++||.|+|+||+   ++++||||+++++|++.|+++          .       ..+.++.|+|||
T Consensus        83 ~~~G~d~id~~~~~~~gi~v~n~~~~---~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           83 MSVGIDHLALDEIKKRGIRVGYTPDV---LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             CCcccccccHHHHHhCCceEEeCCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999999   899999999999999999986          1       124789999999


Q ss_pred             EEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          148 ISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       148 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      |||+|.||+.+|+++++|||+|++|||+..
T Consensus       160 IIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  189 (330)
T 2gcg_A          160 IIGLGRIGQAIARRLKPFGVQRFLYTGRQP  189 (330)
T ss_dssp             EECCSHHHHHHHHHHGGGTCCEEEEESSSC
T ss_pred             EECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            999999999999999999999999998764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.97  E-value=3.7e-31  Score=224.00  Aligned_cols=159  Identities=16%  Similarity=0.230  Sum_probs=126.0

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhcccCceeeeC-ch-hHHhh-cCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCC
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF-FL-SMHSL-YASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVG   88 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~-~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG   88 (189)
                      +.+|+|++++...... +  .+.++...++..... +. ++.+. +.++|+ +++ ..++++++++++|+||||++.++|
T Consensus        19 ~~kp~i~~l~~~~~~~-~--~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   95 (347)
T 1mx3_A           19 SHMPLVALLDGRDCTV-E--MPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSG   95 (347)
T ss_dssp             --CCEEEESSCSCCTT-T--HHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSC
T ss_pred             CCCCEEEEEcCCcchh-h--HHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccc
Confidence            5579999988643221 1  344544333333222 22 44444 367777 544 468999999999999999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------CC-----------CCCCCCCCEEE
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------VP-----------TGETLLGKTVF  147 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~~-----------~~~~l~gktvG  147 (189)
                      +|+||+++++++||.|+|+||+   ++++||||+++++|++.|++.          ..           ...+++|+|||
T Consensus        96 ~d~id~~~~~~~gI~V~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvG  172 (347)
T 1mx3_A           96 FDNIDIKSAGDLGIAVCNVPAA---SVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLG  172 (347)
T ss_dssp             CTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEE
T ss_pred             cCcccHHHHHhCCceEEECCCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEE
Confidence            9999999999999999999999   889999999999999999986          11           12589999999


Q ss_pred             EEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          148 ISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       148 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |||+|+||+.+|+++++|||+|++|||+..+
T Consensus       173 IIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  203 (347)
T 1mx3_A          173 IIGLGRVGQAVALRAKAFGFNVLFYDPYLSD  203 (347)
T ss_dssp             EECCSHHHHHHHHHHHTTTCEEEEECTTSCT
T ss_pred             EEeECHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            9999999999999999999999999998654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.97  E-value=5.2e-31  Score=222.16  Aligned_cols=156  Identities=20%  Similarity=0.250  Sum_probs=128.7

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeC----ch-hHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF----FL-SMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVG   88 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG   88 (189)
                      |++|+++.+..+.    ..+.++...++++...    +. ++.+.++++|+ +.+ ..++++++|+.+|+||||++.|+|
T Consensus         2 ~~~il~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   77 (334)
T 2dbq_A            2 KPKVFITREIPEV----GIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVG   77 (334)
T ss_dssp             CCEEEESSCCCHH----HHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSC
T ss_pred             CcEEEEecCCCHH----HHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcc
Confidence            3688887655322    2344444334444332    22 66778899999 554 357999999999999999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC-----------C----C------CCCCCCCCEEE
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI-----------V----P------TGETLLGKTVF  147 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~-----------~----~------~~~~l~gktvG  147 (189)
                      +|+||+++++++||.|+|+||+   ++++||||+++++|++.|+++           .    .      .+.++.|+|||
T Consensus        78 ~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vg  154 (334)
T 2dbq_A           78 YDNIDIEEATKRGIYVTNTPDV---LTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIG  154 (334)
T ss_dssp             CTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEE
T ss_pred             cccccHHHHHhCCCEEEeCCCc---CHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEE
Confidence            9999999999999999999999   899999999999999999985           1    1      24689999999


Q ss_pred             EEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          148 ISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       148 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |||+|.||+.+|+++++|||+|++|||+...
T Consensus       155 IIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~  185 (334)
T 2dbq_A          155 IIGLGRIGQAIAKRAKGFNMRILYYSRTRKE  185 (334)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             EEccCHHHHHHHHHHHhCCCEEEEECCCcch
Confidence            9999999999999999999999999998754

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.97  E-value=3.5e-31  Score=223.14  Aligned_cols=155  Identities=25%  Similarity=0.324  Sum_probs=129.3

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeee-Cch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCCCCCcC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLC-FFL-SMHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRFRVGLEGV   92 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~aG~d~i   92 (189)
                      +||+++.+..+.    ..+.++...++++.. .+. ++.+.++++|+ ++ +..++++++++.+|+||||++.++|+|++
T Consensus         3 ~~il~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (333)
T 2d0i_A            3 PKVGVLLKMKRE----ALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNI   78 (333)
T ss_dssp             SEEEECSCCCHH----HHHHHHTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred             cEEEEECCCCHH----HHHHHHhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            688888765332    234444433444432 123 67788899999 53 44679999999999999999999999999


Q ss_pred             ChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------CC------CC----CCCCCCEEEEEcCC
Q 044056           93 DIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------VP------TG----ETLLGKTVFISGFG  152 (189)
Q Consensus        93 d~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~~------~~----~~l~gktvGIvG~G  152 (189)
                      |+++++++||.|+|+||+   ++++||||+++++|++.|+++          ..      .+    .+|.|+||||||+|
T Consensus        79 d~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G  155 (333)
T 2d0i_A           79 DLEEATKRGIYVTKVSGL---LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG  155 (333)
T ss_dssp             CHHHHHHTTCEEECCCHH---HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCS
T ss_pred             cHHHHHhCCcEEEeCCCc---ChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccC
Confidence            999999999999999999   899999999999999999986          11      23    78999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .||+.+|+++++|||+|++|||+...
T Consensus       156 ~iG~~vA~~l~~~G~~V~~~d~~~~~  181 (333)
T 2d0i_A          156 AIGKAIARRLIPFGVKLYYWSRHRKV  181 (333)
T ss_dssp             HHHHHHHHHHGGGTCEEEEECSSCCH
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcch
Confidence            99999999999999999999998764

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.97  E-value=1.5e-30  Score=221.56  Aligned_cols=156  Identities=19%  Similarity=0.213  Sum_probs=125.9

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcc-cCceeeeCc---h-hHHhhcCCCeE-EecC---CCCCHHHHhcCCCCeEEEEcC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNY-LSIKGLCFF---L-SMHSLYASYGT-SEQM---IASDSNVITRANPMNLIIRFR   86 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~-~~~~~~~~~---~-~~~~~~~~adv-i~~~---~~~~~~~l~~~p~Lk~I~~~~   86 (189)
                      +++||+.+...+..    .++++.. .++.+....   . ++.+.++++|+ +...   .++++++|+++|+||||++.+
T Consensus        17 ~~~vl~~d~~~~~~----~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~   92 (364)
T 2j6i_A           17 EEKLYGCTENKLGI----ANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAG   92 (364)
T ss_dssp             CTTCTTBTTTGGGC----HHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESS
T ss_pred             CceEEEecCccHHH----HHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECC
Confidence            45566555543332    3444432 233332221   2 67788899999 5432   358999999999999999999


Q ss_pred             CCCCcCChhHHhhC--CeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C------CCCCCCCCCEEEE
Q 044056           87 VGLEGVDIDALTNC--AIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V------PTGETLLGKTVFI  148 (189)
Q Consensus        87 aG~d~id~~~~~~~--gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~------~~~~~l~gktvGI  148 (189)
                      +|+||||++++.++  ||.|+|+||+   ++++||||+++++|++.|+++          .      ..+.+|.|+||||
T Consensus        93 ~G~d~id~~~~~~~~~gI~V~n~pg~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgI  169 (364)
T 2j6i_A           93 VGSDHIDLDYINQTGKKISVLEVTGS---NVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIAT  169 (364)
T ss_dssp             SCCTTBCHHHHHHHTCCCEEEECTTS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEE
T ss_pred             cccccccHHHHHhcCCCEEEEECCCc---CcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEE
Confidence            99999999999999  9999999999   899999999999999999986          1      2467999999999


Q ss_pred             EcCCHHHHHHHHHHccCCCE-EEEEcCCCCC
Q 044056          149 SGFGNIGVELAKRLRPFGVK-IIAAKRSWAS  178 (189)
Q Consensus       149 vG~G~IG~~vA~~l~afG~~-V~~~~r~~~~  178 (189)
                      ||+|+||+++|+++++|||+ |++|||+..+
T Consensus       170 IG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~  200 (364)
T 2j6i_A          170 IGAGRIGYRVLERLVPFNPKELLYYDYQALP  200 (364)
T ss_dssp             ECCSHHHHHHHHHHGGGCCSEEEEECSSCCC
T ss_pred             ECcCHHHHHHHHHHHhCCCcEEEEECCCccc
Confidence            99999999999999999997 9999988643

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.97  E-value=4.9e-30  Score=219.08  Aligned_cols=148  Identities=17%  Similarity=0.224  Sum_probs=123.2

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-Eec-CCCCCHHHHhcCCCCeEEEEcCCCCCcCCh
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQ-MIASDSNVITRANPMNLIIRFRVGLEGVDI   94 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~-~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~   94 (189)
                      |||++.+..+ .    ..+.++.+.++.+........+.++++|+ +++ .+++++++++ +|+||||++.++|+||||+
T Consensus         1 mkil~~~~~~-~----~~~~~~~~~~v~~~~~~~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~   74 (380)
T 2o4c_A            1 MRILADENIP-V----VDAFFADQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDL   74 (380)
T ss_dssp             CEEEEETTCT-T----HHHHHGGGSEEEEECGGGCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCH
T ss_pred             CEEEEecCch-H----HHHHHHhCCcEEEecCCcCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhH
Confidence            5888876643 2    23555555444433322223456789999 554 4689999999 9999999999999999999


Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      ++++++||.|+|+||+   ++.+||||+++++|++.|+.    +.++.|+||||||+|+||+.+|++|++|||+|++|||
T Consensus        75 ~~~~~~gI~v~n~pg~---~~~~vAE~~l~~lL~l~r~~----~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~  147 (380)
T 2o4c_A           75 DYFAEAGIAWSSAPGC---NARGVVDYVLGCLLAMAEVR----GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP  147 (380)
T ss_dssp             HHHHHHTCEEECCTTT---THHHHHHHHHHHHHHHHHHH----TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECH
T ss_pred             HHHHhCCCEEEeCCCc---ChHHHHHHHHHHHHHHHhhh----hcccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            9999999999999998   89999999999999999983    5799999999999999999999999999999999998


Q ss_pred             CCC
Q 044056          175 SWA  177 (189)
Q Consensus       175 ~~~  177 (189)
                      +..
T Consensus       148 ~~~  150 (380)
T 2o4c_A          148 PRQ  150 (380)
T ss_dssp             HHH
T ss_pred             Chh
Confidence            653

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.96  E-value=1.1e-29  Score=211.50  Aligned_cols=144  Identities=18%  Similarity=0.221  Sum_probs=117.8

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChh
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVDID   95 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~   95 (189)
                      |||+++.+..+.    ..+.++.. ++++.      .+.++++|+ +++.  .+.++++++|+||||++.|+|+|+||++
T Consensus         1 m~il~~~~~~~~----~~~~l~~~-~~~v~------~~~~~~~d~~i~~~--~~~~~l~~~~~Lk~I~~~~~G~d~id~~   67 (303)
T 1qp8_A            1 MELYVNFELPPE----AEEELRKY-FKIVR------GGDLGNVEAALVSR--ITAEELAKMPRLKFIQVVTAGLDHLPWE   67 (303)
T ss_dssp             CEEECCSCCCHH----HHHHHHTT-CEEEC------SSCCTTBCCCCBSC--CCHHHHHHCTTCCCEEBSSSCCTTSCCT
T ss_pred             CEEEEccCCCHH----HHHHHHhc-CCccc------hhhhCCCEEEEECC--CCHHHHhhCCCCcEEEECCcCcccccHH
Confidence            578887664322    23444332 23332      256788998 5543  5679999999999999999999999998


Q ss_pred             HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----------C--C-CCCCCCCCEEEEEcCCHHHHHHHHHH
Q 044056           96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----------V--P-TGETLLGKTVFISGFGNIGVELAKRL  162 (189)
Q Consensus        96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----------~--~-~~~~l~gktvGIvG~G~IG~~vA~~l  162 (189)
                      ++ ++||.|+|+||+   ++.+||||+++++|++.|+++          .  . ...++.|+||||||+|+||+.+|+++
T Consensus        68 ~~-~~gi~v~~~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l  143 (303)
T 1qp8_A           68 SI-PPHVTVAGNAGS---NADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKIL  143 (303)
T ss_dssp             TS-CTTSCEECCCSS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHH
T ss_pred             HH-hcCCEEEECCCC---CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHH
Confidence            84 799999999998   899999999999999999987          1  1 33589999999999999999999999


Q ss_pred             ccCCCEEEEEcCCCC
Q 044056          163 RPFGVKIIAAKRSWA  177 (189)
Q Consensus       163 ~afG~~V~~~~r~~~  177 (189)
                      ++|||+|++|||++.
T Consensus       144 ~~~G~~V~~~dr~~~  158 (303)
T 1qp8_A          144 AALGAQVRGFSRTPK  158 (303)
T ss_dssp             HHTTCEEEEECSSCC
T ss_pred             HHCCCEEEEECCCcc
Confidence            999999999999876

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.95  E-value=1.7e-28  Score=203.11  Aligned_cols=146  Identities=21%  Similarity=0.286  Sum_probs=112.9

Q ss_pred             eEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhH
Q 044056           18 LVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDA   96 (189)
Q Consensus        18 ~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~   96 (189)
                      +|++..+......+...+.++.+ +.+       +.+.++++|+ +++..++      ++|+||||++.|+|+|+||+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~-~~~-------~~~~~~~ad~li~~~~~~------~~~~Lk~I~~~~~G~d~id~~~   67 (290)
T 3gvx_A            2 DVYVNFPADGHVREIAKTVLDGF-DLH-------WYPDYYDAEAQVIKDRYV------LGKRTKMIQAISAGVDHIDVNG   67 (290)
T ss_dssp             CEEECSCCCHHHHHHHHHHTTTS-CEE-------ETTSCCCCSEEEESSCCC------CCSSCCEEEECSSCCTTSCGGG
T ss_pred             ceEEecCCcchHHHHHHHHhccc-ccc-------cCcchhhhhhhhhhhhhh------hhhhhHHHHHHhcCCceeecCC
Confidence            45555555433333334444443 211       2267789999 5533332      7899999999999999999999


Q ss_pred             HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHcc
Q 044056           97 LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI------------VPTGETLLGKTVFISGFGNIGVELAKRLRP  164 (189)
Q Consensus        97 ~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~a  164 (189)
                      +.++++.++|. |.   ++++||||+++++|++.|+++            .....+|+|+||||||+|.||+.+|++|++
T Consensus        68 ~~~~~~~~~~~-~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~  143 (290)
T 3gvx_A           68 IPENVVLCSNA-GA---YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKA  143 (290)
T ss_dssp             SCTTSEEECCH-HH---HHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CccceEEeecC-Cc---ceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHh
Confidence            99877766664 66   889999999999999999997            223468999999999999999999999999


Q ss_pred             CCCEEEEEcCCCCCccc
Q 044056          165 FGVKIIAAKRSWASHSQ  181 (189)
Q Consensus       165 fG~~V~~~~r~~~~~~~  181 (189)
                      |||+|++|||++++...
T Consensus       144 ~G~~V~~~dr~~~~~~~  160 (290)
T 3gvx_A          144 FGMRVIAYTRSSVDQNV  160 (290)
T ss_dssp             HTCEEEEECSSCCCTTC
T ss_pred             hCcEEEEEecccccccc
Confidence            99999999999766543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.91  E-value=4.9e-24  Score=176.30  Aligned_cols=150  Identities=15%  Similarity=0.191  Sum_probs=117.7

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhc-ccCceeeeCc-----------h-hHHhhcCCCeE-Eec---------------
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQN-YLSIKGLCFF-----------L-SMHSLYASYGT-SEQ---------------   64 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~-~~~~~~~~~~-----------~-~~~~~~~~adv-i~~---------------   64 (189)
                      ++.|+|+++.... ....+. +.|.. ..++.+...+           . ++.+.++++|+ +.+               
T Consensus         3 ~~~m~i~v~~~~~-~~~~~~-~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~   80 (293)
T 3d4o_A            3 LTGKHVVIIGGDA-RQLEII-RKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFS   80 (293)
T ss_dssp             CTTCEEEEECBCH-HHHHHH-HHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSC
T ss_pred             ccCcEEEEECCCH-HHHHHH-HHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccc
Confidence            4568899987653 222233 33433 2344433221           1 45666789999 553               


Q ss_pred             --CCCCCHHHHhcCCCCeEEEEcCCCCCcCCh-hHHhhCCeEEEecC------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 044056           65 --MIASDSNVITRANPMNLIIRFRVGLEGVDI-DALTNCAIKAARIL------GDVSGNAASCAELSIYLMLGLLRKHIV  135 (189)
Q Consensus        65 --~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~-~~~~~~gI~v~n~~------g~~~~~a~~vAE~~l~liL~~~R~~~~  135 (189)
                        ..++++++++.+|+||+|+   +|+|++|+ ++++++||.|+|++      ++   ++.+|||++++++|.+      
T Consensus        81 ~~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~---~~~svae~a~~~~l~~------  148 (293)
T 3d4o_A           81 NESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIY---NSIPTAEGTIMMAIQH------  148 (293)
T ss_dssp             SCCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHH---HHHHHHHHHHHHHHHH------
T ss_pred             cCCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeee---ccHhHHHHHHHHHHHh------
Confidence              1257999999999999997   89999998 89999999999998      77   8899999999999985      


Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                       .+.++.|+||||+|+|+||+.+|+++++|||+|++|||++.+
T Consensus       149 -~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~  190 (293)
T 3d4o_A          149 -TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDL  190 (293)
T ss_dssp             -CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             -cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence             356899999999999999999999999999999999998643

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.83  E-value=1.5e-20  Score=155.81  Aligned_cols=153  Identities=14%  Similarity=0.153  Sum_probs=107.8

Q ss_pred             CCCCcceEEEeCCCCCCchhHHHHHhhcccCceeeeCch------------hHHhhcCCCeE-Ee----c----------
Q 044056           12 SDKSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFL------------SMHSLYASYGT-SE----Q----------   64 (189)
Q Consensus        12 ~~~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~adv-i~----~----------   64 (189)
                      ..|+.|||+++.... ....+...+.+..+++.+...++            ++.+.++++|+ +.    .          
T Consensus         3 ~~~~~mki~v~~~~~-~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~   81 (300)
T 2rir_A            3 AMLTGLKIAVIGGDA-RQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF   81 (300)
T ss_dssp             CCCCSCEEEEESBCH-HHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred             ccccCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence            346668999998742 22233333323333443332221            24566788999 55    1          


Q ss_pred             -CCC--CCHHHHhcCCCCeEEEEcCCCCCcCC-hhHHhhCCeEEEecCCCCCCCchh------HHHHHHHHHHHHHhcCC
Q 044056           65 -MIA--SDSNVITRANPMNLIIRFRVGLEGVD-IDALTNCAIKAARILGDVSGNAAS------CAELSIYLMLGLLRKHI  134 (189)
Q Consensus        65 -~~~--~~~~~l~~~p~Lk~I~~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~~a~~------vAE~~l~liL~~~R~~~  134 (189)
                       ..+  +++++++.+|++|+|+   +|+|++| ++++.++||.|+|+|++   ++.+      +++..+..  . .    
T Consensus        82 a~~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~---~~v~~~r~~~~~~g~~~~--~-~----  148 (300)
T 2rir_A           82 SNEEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFER---DDIAIYNSIPTVEGTIML--A-I----  148 (300)
T ss_dssp             CSSCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGS---HHHHHHHHHHHHHHHHHH--H-H----
T ss_pred             ccCCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCC---CceEEEcCccHHHHHHHH--H-H----
Confidence             245  7899999999999998   8999999 99999999999999997   3111      11111111  0 0    


Q ss_pred             CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          135 VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       135 ~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...+.++.|+||||||+|+||+.+|+++++|||+|++|||+..+
T Consensus       149 ~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~  192 (300)
T 2rir_A          149 QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAH  192 (300)
T ss_dssp             HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            12467899999999999999999999999999999999998643

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.55  E-value=1.6e-15  Score=133.21  Aligned_cols=96  Identities=15%  Similarity=0.209  Sum_probs=79.2

Q ss_pred             CCCeEEE-EcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEcC
Q 044056           77 NPMNLII-RFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----VPTGETLLGKTVFISGF  151 (189)
Q Consensus        77 p~Lk~I~-~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----~~~~~~l~gktvGIvG~  151 (189)
                      |+++.|. .+++|+|++  +++.++||.++|++++   ++ +|||+.+-.+....+.+.    ...+.++.||||||+|+
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~v---n~-sVae~l~r~~~~~~~~l~~gw~~~~g~~L~GktVgIIG~  285 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNV---ND-SVTKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGY  285 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHHHHHHHHHHHTTHHHHHHHHHCCCCTTCEEEEECC
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCc---cH-HHHHHHHhhhHhhhhhhhhhhhhccccccCCCEEEEEcc
Confidence            7899998 889999998  7899999999999998   87 999965433322211111    22467899999999999


Q ss_pred             CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          152 GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       152 G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |.||+.+|++|++|||+|++|||++..
T Consensus       286 G~IG~~vA~~l~~~G~~V~v~d~~~~~  312 (494)
T 3d64_A          286 GDVGKGCAQSLRGLGATVWVTEIDPIC  312 (494)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEECSCHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCChHh
Confidence            999999999999999999999998653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.51  E-value=1.2e-15  Score=133.43  Aligned_cols=96  Identities=14%  Similarity=0.159  Sum_probs=77.7

Q ss_pred             CCCeEEE-EcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEcC
Q 044056           77 NPMNLII-RFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----VPTGETLLGKTVFISGF  151 (189)
Q Consensus        77 p~Lk~I~-~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----~~~~~~l~gktvGIvG~  151 (189)
                      |+++.|+ .+++|+|++  +++.++||.++|++++   ++ +|||+.+-.+....+.+.    ...+.++.||||||+|+
T Consensus       192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~v---n~-sVae~l~r~~~~~~~~l~~gw~r~~~~~l~GktVgIIG~  265 (479)
T 1v8b_A          192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINV---ND-AVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGY  265 (479)
T ss_dssp             TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEEC---TT-SHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTSEEEEECC
T ss_pred             cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCc---cH-HHHHHHHhchHhHHHHHhhhhhhccccccCCCEEEEEee
Confidence            7999999 899999998  7899999999999998   77 999954222211111100    12456899999999999


Q ss_pred             CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          152 GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       152 G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |.||+.+|++|++|||+|++||+++..
T Consensus       266 G~IG~~vA~~l~~~G~~Viv~d~~~~~  292 (479)
T 1v8b_A          266 GDVGKGCASSMKGLGARVYITEIDPIC  292 (479)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             CHHHHHHHHHHHhCcCEEEEEeCChhh
Confidence            999999999999999999999998653

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.43  E-value=3.9e-13  Score=114.62  Aligned_cols=119  Identities=12%  Similarity=0.021  Sum_probs=94.5

Q ss_pred             hcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEE----------ecCCCCCCCchhHHHHHH
Q 044056           55 LYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAA----------RILGDVSGNAASCAELSI  123 (189)
Q Consensus        55 ~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~----------n~~g~~~~~a~~vAE~~l  123 (189)
                      .++++|+ +....++++++....|+..++.....++|...++.+.++||.+.          |.|.+     .++||++.
T Consensus        64 ~~~~adii~~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~-----s~~ae~ag  138 (377)
T 2vhw_A           64 VWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL-----APMSEVAG  138 (377)
T ss_dssp             HHHHCSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT-----HHHHHHHH
T ss_pred             HhccCCEEEEeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc-----CchHHHHH
Confidence            3456888 44556777777776788888877788889888999999999997          66665     67889999


Q ss_pred             HHHHHHH-hcCCC---------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          124 YLMLGLL-RKHIV---------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       124 ~liL~~~-R~~~~---------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.+.+. |++..         ....++.|+||+|+|+|.||+.+|+++++||++|+++|+++..
T Consensus       139 ~~a~~~a~r~l~~~~~g~~~~~~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~  203 (377)
T 2vhw_A          139 RLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDK  203 (377)
T ss_dssp             HHHHHHHHHHTSGGGTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             HHHHHHHHHHHHHhcCCCcccccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            5555444 77761         1123689999999999999999999999999999999998643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.23  E-value=6.6e-11  Score=101.65  Aligned_cols=121  Identities=12%  Similarity=0.021  Sum_probs=86.5

Q ss_pred             CCeEEecCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCC-CC------chhHHHHHH-HHHHH
Q 044056           58 SYGTSEQMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVS-GN------AASCAELSI-YLMLG  128 (189)
Q Consensus        58 ~advi~~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~-~~------a~~vAE~~l-~liL~  128 (189)
                      .+|+++.....+.+.++.+ |++++|+..+.|+|+++++++.++||++.+...... ..      ..++++.+- ..++.
T Consensus        72 ~adiil~vk~p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~e~v~~~~~a~~l~~l~~~a~~ag~~av~~  151 (401)
T 1x13_A           72 QSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVE  151 (401)
T ss_dssp             SSSEEECSSCCCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEeCCCCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEeehhhhhhhhcccchHHHHHHHHHHHHHHH
Confidence            3898443333466778887 799999999999999999999999999986533310 01      234555542 12222


Q ss_pred             HHhcCC-CCCC-----CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          129 LLRKHI-VPTG-----ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       129 ~~R~~~-~~~~-----~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..+.+. ...+     .++.+++|+|+|+|.||+.+++.+++||++|+++|+++..
T Consensus       152 ~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~  207 (401)
T 1x13_A          152 AAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEV  207 (401)
T ss_dssp             HHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGG
T ss_pred             HHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            222222 1111     1578999999999999999999999999999999998654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.17  E-value=1.3e-10  Score=99.18  Aligned_cols=123  Identities=15%  Similarity=0.107  Sum_probs=89.2

Q ss_pred             hhcCCCeE-EecCCCC----CHHHHhcCC-CCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCC--Cc------hhHH
Q 044056           54 SLYASYGT-SEQMIAS----DSNVITRAN-PMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSG--NA------ASCA  119 (189)
Q Consensus        54 ~~~~~adv-i~~~~~~----~~~~l~~~p-~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~--~a------~~vA  119 (189)
                      +.++++|+ +....++    +++.++.++ +++++.....+.|+.+++++.++||.+++..-. +.  .+      .+++
T Consensus        63 ~~~~~adiil~v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~~-~~~~~~~~l~~l~~~a  141 (384)
T 1l7d_A           63 QALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELM-PRISRAQSMDILSSQS  141 (384)
T ss_dssp             HHHSSCSEEEEEECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGGC-CCSGGGGGGCHHHHHH
T ss_pred             hhhcCCCEEEEecCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEeccc-cccccccccchhhHHH
Confidence            45678999 5444565    778889885 699999999999999999999999999974211 10  11      2344


Q ss_pred             HHHH--HHHHHHHhcCCCC------CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          120 ELSI--YLMLGLLRKHIVP------TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       120 E~~l--~liL~~~R~~~~~------~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.+-  +...+ .+.+...      ...++.+++|+|+|+|.||+.+++.+++||++|+++|+++..
T Consensus       142 ~~ag~~av~~~-~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~  207 (384)
T 1l7d_A          142 NLAGYRAVIDG-AYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT  207 (384)
T ss_dssp             HHHHHHHHHHH-HHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             HHHHHHHHHHH-HHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4332  22222 2222210      114789999999999999999999999999999999998754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.09  E-value=1.4e-11  Score=108.34  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=72.6

Q ss_pred             CCe-EEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEcCC
Q 044056           78 PMN-LIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI----VPTGETLLGKTVFISGFG  152 (189)
Q Consensus        78 ~Lk-~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~----~~~~~~l~gktvGIvG~G  152 (189)
                      +++ ++-.+++|+|++  .++.++||.++|++++   ++ +|||+.+-.+....+...    ......+.|++|+|+|+|
T Consensus       210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~v---n~-sVae~~~r~l~~~~~s~~~g~~r~~~~~l~GktV~IiG~G  283 (494)
T 3ce6_A          210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINV---ND-SVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLICGYG  283 (494)
T ss_dssp             HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCS
T ss_pred             CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCc---cH-HHHHHHHhhhhhhhhhhhHHHHhccCCCCCcCEEEEEccC
Confidence            344 445889999998  6788999999999998   76 999965433222111000    112347899999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          153 NIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       153 ~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .||+.+|+++++||++|+++|+++..
T Consensus       284 ~IG~~~A~~lka~Ga~Viv~d~~~~~  309 (494)
T 3ce6_A          284 DVGKGCAEAMKGQGARVSVTEIDPIN  309 (494)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            99999999999999999999997644

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.04  E-value=3e-09  Score=90.19  Aligned_cols=118  Identities=10%  Similarity=0.032  Sum_probs=86.7

Q ss_pred             hcCCCeE-EecCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEE---ecCCCCCCCc----hhHHHHHH--
Q 044056           55 LYASYGT-SEQMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAA---RILGDVSGNA----ASCAELSI--  123 (189)
Q Consensus        55 ~~~~adv-i~~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~---n~~g~~~~~a----~~vAE~~l--  123 (189)
                      .. ++|+ +....++++ .+..+ |+++++.....+.|..+++.+.++||.+.   +.+.. . ..    .+++|.+-  
T Consensus        63 ~~-~ad~il~vk~p~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~-~-~~~~~l~~~s~~ag~~  138 (369)
T 2eez_A           63 AW-GAEMVVKVKEPLPE-EYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLP-D-GTLPLLVPMSEVAGRM  138 (369)
T ss_dssp             HT-TSSEEECSSCCCGG-GGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCT-T-CCCTTTHHHHHHHHHH
T ss_pred             ee-cCCEEEEECCCCHH-HHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccc-c-CCeeecccchHHHHHH
Confidence            44 7999 444455544 46665 78999999999999999999999999997   44442 0 11    45666554  


Q ss_pred             HHHHHHHhcCC---------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          124 YLMLGLLRKHI---------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       124 ~liL~~~R~~~---------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.++++. .+.         .....++.+++|+|+|.|.||+.+|+.++++|++|+++|++..
T Consensus       139 av~~a~~-~l~~~~~g~~~~~~~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~  200 (369)
T 2eez_A          139 APQVGAQ-FLEKPKGGRGVLLGGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHK  200 (369)
T ss_dssp             HHHHHHH-HTSGGGTSCCCCTTCBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHHHH-HHHHhcCCCceecCCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            3333332 232         1112468999999999999999999999999999999999764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.94  E-value=3.8e-10  Score=97.46  Aligned_cols=91  Identities=19%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             EcCCCCCcCC-hhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 044056           84 RFRVGLEGVD-IDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRL  162 (189)
Q Consensus        84 ~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l  162 (189)
                      -+++|+..+. .....+.+|+|.|+++.   ......+...+..-.+.+.+....+.++.||||||+|+|.||+.+|++|
T Consensus       154 eTttGv~rL~~~~~~g~L~iPVinvnds---vtk~~~Dn~~Gt~~slldgi~ratg~~L~GktVgIiG~G~IG~~vA~~L  230 (436)
T 3h9u_A          154 ETTTGVKNLYKRLQRGKLTIPAMNVNDS---VTKSKFDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAAL  230 (436)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTTS---HHHHTTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             ccCcChHHHHHHHHcCCCCCceEeechh---hhhhhhhccccchHHHHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHH
Confidence            3445554432 23345689999999876   4444222222211111111111246789999999999999999999999


Q ss_pred             ccCCCEEEEEcCCCC
Q 044056          163 RPFGVKIIAAKRSWA  177 (189)
Q Consensus       163 ~afG~~V~~~~r~~~  177 (189)
                      ++|||+|++||+++.
T Consensus       231 ka~Ga~Viv~D~~p~  245 (436)
T 3h9u_A          231 RGFGARVVVTEVDPI  245 (436)
T ss_dssp             HHTTCEEEEECSCHH
T ss_pred             HHCCCEEEEECCChh
Confidence            999999999999753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.88  E-value=5.9e-11  Score=101.93  Aligned_cols=98  Identities=23%  Similarity=0.325  Sum_probs=84.1

Q ss_pred             CCCeEEEEcCCCCCcCChhHHh-----hCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC-------CCC-------
Q 044056           77 NPMNLIIRFRVGLEGVDIDALT-----NCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI-------VPT-------  137 (189)
Q Consensus        77 p~Lk~I~~~~aG~d~id~~~~~-----~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~-------~~~-------  137 (189)
                      +.+++|...++|+|++++.+..     ++++.+++.+|.   . ..++++.+..++.+.|++.       ...       
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~---~-~~~~~~~~~~a~~~~k~v~~~~~~~~~~~s~a~~av  155 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT---L-DEALKIVFRRAINLGKRAREETRISEGAVSIGSAAV  155 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC---C-CHHHHHHHHHHHHHHHHHHHHSSTTCSCCSHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC---c-hHHHHHHHHHHhhhhccCcchhhhcCCCccHHHHHH
Confidence            4688999999999999998877     889999999886   2 6899999999999999876       000       


Q ss_pred             ------CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          138 ------GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       138 ------~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                            ..++.|++|+|+|+|.||+.+++.++++|+ +|++++|+..+
T Consensus       156 ~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~r  203 (404)
T 1gpj_A          156 ELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYER  203 (404)
T ss_dssp             HHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHH
T ss_pred             HHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence                  014789999999999999999999999999 99999998643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.73  E-value=5.1e-09  Score=90.59  Aligned_cols=86  Identities=19%  Similarity=0.269  Sum_probs=58.7

Q ss_pred             EcCCCCCcCC-hhHHhhCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHH
Q 044056           84 RFRVGLEGVD-IDALTNCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVEL  158 (189)
Q Consensus        84 ~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~v  158 (189)
                      -+++|+-.+- ....-...+|+.|+.+..+.    |-..+.|.++..+.   |    ..+.++.||||||+|+|.||+.+
T Consensus       190 eTtTGv~rL~~m~~~g~L~~PvinVnds~tK~~fDn~yG~~eslvdgI~---R----atg~~L~GKTVgVIG~G~IGr~v  262 (464)
T 3n58_A          190 ETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIR---R----GTDVMMAGKVAVVCGYGDVGKGS  262 (464)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---H----HHCCCCTTCEEEEECCSHHHHHH
T ss_pred             ccccchHHHHHHHHcCCCCCCEEeeccHhhhhhhhhhhcchHHHHHHHH---H----hcCCcccCCEEEEECcCHHHHHH
Confidence            4455555432 12223456999998776221    11233444443332   2    24678999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCC
Q 044056          159 AKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       159 A~~l~afG~~V~~~~r~~  176 (189)
                      |++|++|||+|+++++.+
T Consensus       263 A~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          263 AQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             HHHHHHTTCEEEEECSSH
T ss_pred             HHHHHHCCCEEEEEeCCc
Confidence            999999999999998865

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.67  E-value=9.7e-09  Score=88.55  Aligned_cols=71  Identities=20%  Similarity=0.299  Sum_probs=53.2

Q ss_pred             hCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056           99 NCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        99 ~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      +..+||.|+.+..+.    +-..+++-++..+..       ..+..+.||||+|+|+|.||+.+|++|++|||+|+++|+
T Consensus       179 ~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~r-------at~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~  251 (435)
T 3gvp_A          179 KLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKR-------TTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEI  251 (435)
T ss_dssp             CCCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHH-------HHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCEEEecchhhhhhhhhhhhhHHHHHHHHHH-------hhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeC
Confidence            457999998886221    112234444433332       246789999999999999999999999999999999998


Q ss_pred             CC
Q 044056          175 SW  176 (189)
Q Consensus       175 ~~  176 (189)
                      ++
T Consensus       252 dp  253 (435)
T 3gvp_A          252 DP  253 (435)
T ss_dssp             CH
T ss_pred             Ch
Confidence            75

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.59  E-value=9.3e-08  Score=82.44  Aligned_cols=58  Identities=34%  Similarity=0.490  Sum_probs=49.2

Q ss_pred             CchhHHHHHHHHHHHHHhcCCCCCCCC-CCCCEEEEEcCCHHHHHHHHHHcc-CCCEEEEEcCC
Q 044056          114 NAASCAELSIYLMLGLLRKHIVPTGET-LLGKTVFISGFGNIGVELAKRLRP-FGVKIIAAKRS  175 (189)
Q Consensus       114 ~a~~vAE~~l~liL~~~R~~~~~~~~~-l~gktvGIvG~G~IG~~vA~~l~a-fG~~V~~~~r~  175 (189)
                      ..++++--++..+...++.    .+.+ |.||||||+|+|+||+.+|+++++ |||+|++|+++
T Consensus       186 ~~~aTg~Gv~~~~~~~~~~----~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~  245 (419)
T 1gtm_A          186 RIEATARGASYTIREAAKV----LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS  245 (419)
T ss_dssp             TTTHHHHHHHHHHHHHHHH----TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCcchhhHHHHHHHHHHHH----hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3457777777777777775    4667 999999999999999999999999 99999999544

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.40  E-value=6.2e-07  Score=75.70  Aligned_cols=93  Identities=23%  Similarity=0.240  Sum_probs=64.1

Q ss_pred             eEEEEcCCCCCcCChhHHhhCCeEEEecC---CCCCCCchhHHHHHHHHHHHHHhcCCCCCCC-CCCCCEEEEEcCCHHH
Q 044056           80 NLIIRFRVGLEGVDIDALTNCAIKAARIL---GDVSGNAASCAELSIYLMLGLLRKHIVPTGE-TLLGKTVFISGFGNIG  155 (189)
Q Consensus        80 k~I~~~~aG~d~id~~~~~~~gI~v~n~~---g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~-~l~gktvGIvG~G~IG  155 (189)
                      +.|-..-.|++.=+..++...-=.||--|   |-+.+-.++++--++..+-..++.    .+. ++.||||+|+|+|+||
T Consensus       112 ~~ipa~D~gt~~~~m~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~----~G~~~L~GktV~I~G~GnVG  187 (355)
T 1c1d_A          112 NYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSSAFTTAVGVFEAMKATVAH----RGLGSLDGLTVLVQGLGAVG  187 (355)
T ss_dssp             SEEEEECTTCCHHHHHHHHHHCSCBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHH----TTCCCSTTCEEEEECCSHHH
T ss_pred             CcccCCCCCCCHHHHHHHHHhcCeeeccchhhCCCCCchhHHHHHHHHHHHHHHHh----cCCCCCCCCEEEEECcCHHH
Confidence            57766667776544444433211233322   111113356666677777777775    355 8999999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCC
Q 044056          156 VELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       156 ~~vA~~l~afG~~V~~~~r~~  176 (189)
                      +.+|++|++|||+|+++|++.
T Consensus       188 ~~~A~~l~~~GakVvvsD~~~  208 (355)
T 1c1d_A          188 GSLASLAAEAGAQLLVADTDT  208 (355)
T ss_dssp             HHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHHHCCCEEEEEeCCc
Confidence            999999999999999999864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.12  E-value=1.4e-06  Score=76.20  Aligned_cols=86  Identities=20%  Similarity=0.311  Sum_probs=58.9

Q ss_pred             EcCCCCCcCC-hhHHhhCCeEEEecCCCCCC----CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHH
Q 044056           84 RFRVGLEGVD-IDALTNCAIKAARILGDVSG----NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVEL  158 (189)
Q Consensus        84 ~~~aG~d~id-~~~~~~~gI~v~n~~g~~~~----~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~v  158 (189)
                      -+++|+..+- +.......||+.|+.+..+.    +...+++.++..+.   |    .....+.||+++|+|+|.||+.+
T Consensus       208 eTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r----~tg~~L~GKtVvVtGaGgIG~ai  280 (488)
T 3ond_A          208 ETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---R----ATDVMIAGKVAVVAGYGDVGKGC  280 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---H----HHCCCCTTCEEEEECCSHHHHHH
T ss_pred             cccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHHHHHH---H----HcCCcccCCEEEEECCCHHHHHH
Confidence            4556665542 11222467999999885110    11134554443332   3    23457999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCC
Q 044056          159 AKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       159 A~~l~afG~~V~~~~r~~  176 (189)
                      |++|+++|++|+++|+++
T Consensus       281 A~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          281 AAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             HHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHCCCEEEEEcCCH
Confidence            999999999999999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.07  E-value=1e-05  Score=68.78  Aligned_cols=119  Identities=14%  Similarity=0.067  Sum_probs=75.9

Q ss_pred             CeEEecCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEe---cCCCCC----CCchhHHHHHH--HHHHH
Q 044056           59 YGTSEQMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAAR---ILGDVS----GNAASCAELSI--YLMLG  128 (189)
Q Consensus        59 advi~~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n---~~g~~~----~~a~~vAE~~l--~liL~  128 (189)
                      +|+|+.-.+++++-++.+ |+..++....-..|.=-++.+.+++|...-   .|..+-    .-=.++||.+=  +.+++
T Consensus        85 adiIlkVk~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av~~a  164 (381)
T 3p2y_A           85 ADVVVKVNPPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAVLLG  164 (381)
T ss_dssp             SSEEECSSCCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHHHHH
Confidence            788554455666667777 455566555544444345778889988743   222100    01124555554  22222


Q ss_pred             HHhcCC------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          129 LLRKHI------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       129 ~~R~~~------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      . ..+.      ......+.+++|+|+|+|.||..+|+.+++||++|++||+++..
T Consensus       165 a-~~l~~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~  219 (381)
T 3p2y_A          165 A-SLSTRFVPMLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEV  219 (381)
T ss_dssp             H-HHCSSCSSCEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGG
T ss_pred             H-HHhhhhhhhhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            2 2222      11234678999999999999999999999999999999998754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.06  E-value=1.6e-06  Score=69.80  Aligned_cols=97  Identities=16%  Similarity=0.158  Sum_probs=73.3

Q ss_pred             CeEEecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 044056           59 YGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTG  138 (189)
Q Consensus        59 advi~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~  138 (189)
                      .+.+..+.|+.++++..++.|.-++....|+|.++.    +.|    +..|+   +.+.     .+++.++.|.     +
T Consensus        54 ~~G~~vt~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g----~~~g~---ntd~-----~g~~~~l~~~-----~  112 (263)
T 2d5c_A           54 FRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEG----RLFGF---NTDA-----PGFLEALKAG-----G  112 (263)
T ss_dssp             CSEEEECTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETT----EEEEE---CCHH-----HHHHHHHHHT-----T
T ss_pred             CceEEEcccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCC----eEEEe---CCCH-----HHHHHHHHHh-----C
Confidence            333444568888999988999888888999999864    344    23344   3332     3556665553     3


Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.| +++|||+|.+|+.+|+.|..+|++|.+|+|+..
T Consensus       113 ~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~  150 (263)
T 2d5c_A          113 IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQ  150 (263)
T ss_dssp             CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            47889 999999999999999999999999999999853

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.97  E-value=6.5e-06  Score=69.69  Aligned_cols=95  Identities=23%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             eEEEEcCCCCCcCChhHHhhCCeEEEecC---CCCCCCchhHHHHHHHHHHHHHhcCCCCCCC-CCCCCEEEEEcCCHHH
Q 044056           80 NLIIRFRVGLEGVDIDALTNCAIKAARIL---GDVSGNAASCAELSIYLMLGLLRKHIVPTGE-TLLGKTVFISGFGNIG  155 (189)
Q Consensus        80 k~I~~~~aG~d~id~~~~~~~gI~v~n~~---g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~-~l~gktvGIvG~G~IG  155 (189)
                      ++|-..-.|++.-++.++...==.+|--|   |-+.+-.++++--++..+..++++.   .+. +|.||||+|+|+|++|
T Consensus       109 ~~i~A~D~Gt~~~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~---~G~~~L~GktV~V~G~G~VG  185 (364)
T 1leh_A          109 RYITAEDVGTTVDDMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEA---FGSDSLEGLAVSVQGLGNVA  185 (364)
T ss_dssp             SEEBCBCTTCCHHHHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH---HSSCCCTTCEEEEECCSHHH
T ss_pred             ceEEcccCCCCHHHHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHHHHhh---ccccCCCcCEEEEECchHHH
Confidence            57766667776655555554310122111   0000012345555555555555541   133 7999999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCCC
Q 044056          156 VELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       156 ~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.+|++|..+|++|+++|++..
T Consensus       186 ~~~A~~L~~~GakVvv~D~~~~  207 (364)
T 1leh_A          186 KALCKKLNTEGAKLVVTDVNKA  207 (364)
T ss_dssp             HHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHHHHCCCEEEEEcCCHH
Confidence            9999999999999999998653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.96  E-value=2.1e-05  Score=67.37  Aligned_cols=122  Identities=13%  Similarity=0.062  Sum_probs=74.7

Q ss_pred             cCCCeEEecCCCCCHHHHhcC-CCCeEEEEcCCCCCcCChhHHhhCCeEEEe---cCCCCC----CCchhHHHHHH--HH
Q 044056           56 YASYGTSEQMIASDSNVITRA-NPMNLIIRFRVGLEGVDIDALTNCAIKAAR---ILGDVS----GNAASCAELSI--YL  125 (189)
Q Consensus        56 ~~~advi~~~~~~~~~~l~~~-p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n---~~g~~~----~~a~~vAE~~l--~l  125 (189)
                      ..++|+|+.-.+++++-++.+ |+--++....-.-|.=-++.+.++||...-   .|..+-    .-=.++||.+=  +.
T Consensus        88 ~~~adiIlkVk~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~Av  167 (405)
T 4dio_A           88 AKTADVILKVRRPSAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQAV  167 (405)
T ss_dssp             GGGCSEEEEEECCCTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHHH
T ss_pred             hccCCEEEEeCCCChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHHH
Confidence            345788443233344445656 456666655554444445778889988743   232100    00124555553  22


Q ss_pred             HHHHHhcCCC------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          126 MLGLLRKHIV------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       126 iL~~~R~~~~------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.+. ..+..      .....+.+.+|+|+|+|.||..+|+.+++||++|++||+++..
T Consensus       168 ~~aa-~~l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~  225 (405)
T 4dio_A          168 IDAA-YEYDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAA  225 (405)
T ss_dssp             HHHH-HHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTH
T ss_pred             HHHH-HHhHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            2222 22221      1123578999999999999999999999999999999998754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.96  E-value=7.2e-05  Score=62.94  Aligned_cols=119  Identities=12%  Similarity=-0.035  Sum_probs=77.0

Q ss_pred             CCeEEe-cCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEec---CCC---CCCCchhHHHHHH--HHHHH
Q 044056           58 SYGTSE-QMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARI---LGD---VSGNAASCAELSI--YLMLG  128 (189)
Q Consensus        58 ~advi~-~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~---~g~---~~~~a~~vAE~~l--~liL~  128 (189)
                      ++|+|+ ...|...+.....+++.++......++.-.++.+.+.|+...|.   |.-   .. .-.+++|.+-  +.++.
T Consensus        66 ~ad~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~-~l~~~s~~Ag~~a~~~g  144 (361)
T 1pjc_A           66 SREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLP-LLTPMSIIAGRLSVQFG  144 (361)
T ss_dssp             TSSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCT-TTHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCcc-ccCcchHHHHHHHHHHH
Confidence            688843 44454444333346776766666666654567788888888754   331   01 2245666555  44444


Q ss_pred             HHhcCCC--------CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          129 LLRKHIV--------PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       129 ~~R~~~~--------~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...-...        .....+.+++|.|+|.|.+|+.+++.++.+|++|+++||++.
T Consensus       145 A~nt~~~~~g~G~~l~~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~  201 (361)
T 1pjc_A          145 ARFLERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE  201 (361)
T ss_dssp             HHHTSGGGTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHhhccCCCceeccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            4221110        111347889999999999999999999999999999999854

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.80  E-value=1.7e-05  Score=63.09  Aligned_cols=43  Identities=19%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ....++.+++|||||+|.+|+.+|+.|...|.+|.+|||++..
T Consensus        12 ~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           12 HENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             -------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            3467889999999999999999999999999999999998654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.73  E-value=8.5e-06  Score=66.10  Aligned_cols=99  Identities=12%  Similarity=0.061  Sum_probs=70.8

Q ss_pred             CCeEEecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 044056           58 SYGTSEQMIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPT  137 (189)
Q Consensus        58 ~advi~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~  137 (189)
                      +.+++..+.|...+++..++.+.-.+....++|.++.    +.|-.    .|+   |.+..     +++.++.|.     
T Consensus        65 ~~~G~nvtiP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~---nTd~~-----G~~~~l~~~-----  123 (275)
T 2hk9_A           65 KVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGY---NTDWI-----GFLKSLKSL-----  123 (275)
T ss_dssp             TCCEEEECTTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEE---CCHHH-----HHHHHHHHH-----
T ss_pred             CCCEEEECccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----Eee---cCCHH-----HHHHHHHHh-----
Confidence            3556433567888888888877777777778887753    34522    233   33222     455555442     


Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.++.+++++|||+|.+|+++|+.|...|++|..|+|+..
T Consensus       124 ~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~  163 (275)
T 2hk9_A          124 IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKE  163 (275)
T ss_dssp             CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHH
T ss_pred             CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            3468899999999999999999999999999999999853

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.67  E-value=4.2e-05  Score=59.46  Aligned_cols=41  Identities=17%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++..++|+|||+|.+|+.+|+.|...|.+|.+|||+..
T Consensus        13 ~~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           13 ENLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            34578899999999999999999999999999999999754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.60  E-value=2.6e-05  Score=65.11  Aligned_cols=40  Identities=33%  Similarity=0.449  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..+.+++|||||+|.||+.+|+.|+..|++|++|+|+...
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~   51 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSA   51 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHH
Confidence            3567899999999999999999999999999999998654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.59  E-value=4.8e-05  Score=55.33  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=33.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +++|+|+|.|.+|+.+++.|..+|++|..|+|+...
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~   56 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDH   56 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence            899999999999999999999999999999998543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.59  E-value=6.7e-05  Score=55.25  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=35.2

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ......+++|.|+|+|.+|+.+|+.|+..|.+|+++++++..
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~   54 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYA   54 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            445677899999999999999999999999999999987654

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.66  E-value=1.3e-05  Score=62.16  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.+++|||||+|++|+.+|+.|..+|++|.+|+|+..
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            6788999999999999999999999999999999865

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.43  E-value=0.00012  Score=60.23  Aligned_cols=42  Identities=19%  Similarity=0.173  Sum_probs=35.6

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .....-++|||||+|.+|+.+|+.|...|.+|.+|||++...
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~   57 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKC   57 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGG
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence            345556899999999999999999999999999999987543

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.39  E-value=0.00012  Score=59.72  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      .++|||||+|.+|+.+|+.|...|.+|.+|||++....
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~   52 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMT   52 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            36899999999999999999999999999999877543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.37  E-value=0.00018  Score=59.36  Aligned_cols=38  Identities=34%  Similarity=0.391  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~  177 (189)
                      ++.-++|||||+|.||..+|+.++..|.  +|++|||++.
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            3445899999999999999999999999  9999999864

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.37  E-value=0.00021  Score=60.33  Aligned_cols=40  Identities=30%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..-+.||||||+|.|.+|+.+++.++.+|++|+++|+++.
T Consensus         9 ~~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A            9 RIILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            3457899999999999999999999999999999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.32  E-value=0.00018  Score=59.41  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=34.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ....++|||||+|.+|+.+|+.|...|.+|.+|||++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~   66 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPAR   66 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHH
Confidence            345679999999999999999999999999999998653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.31  E-value=0.00013  Score=54.90  Aligned_cols=39  Identities=23%  Similarity=0.195  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPF-GVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~  177 (189)
                      .++.+++|+|+|+|.+|+.+|+.|+.. |.+|.++|+++.
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            457788999999999999999999998 999999998754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.27  E-value=0.00015  Score=51.76  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+.++++.|+|+|.+|+.+++.|...|.+|..+|+...
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~   40 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   40 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35678999999999999999999999999999998643

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.27  E-value=0.00023  Score=59.92  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +..++|||||+|.+|+.+|+.|...|.+|.+|||++..
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~   57 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNA   57 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            34689999999999999999999999999999998643

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.24  E-value=0.00022  Score=62.44  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=32.4

Q ss_pred             CCCCC-CEEEEEcCCHHHHHHHHHHccC------CCEEEEEcCC
Q 044056          139 ETLLG-KTVFISGFGNIGVELAKRLRPF------GVKIIAAKRS  175 (189)
Q Consensus       139 ~~l~g-ktvGIvG~G~IG~~vA~~l~af------G~~V~~~~r~  175 (189)
                      ..|.| |+|||||+|.+|.++|+.|+..      |++|++..+.
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~   92 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRK   92 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECT
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCC
Confidence            56889 9999999999999999999977      9998866554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.23  E-value=0.00022  Score=51.32  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+++.|+|+|.+|+.+|+.|...|.+|+++|+.+.
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            3467899999999999999999999999999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.22  E-value=0.00033  Score=49.73  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +++|+|+|+|.+|+.+|+.|...|.+|..+|+++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~   38 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   38 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            57899999999999999999999999999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.21  E-value=0.00025  Score=51.27  Aligned_cols=36  Identities=17%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..++.|+|+|.+|+.+|+.|+..|.+|+++|+.+..
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~   42 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTR   42 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            357999999999999999999999999999997653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.00026  Score=58.41  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSW  176 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~  176 (189)
                      .++|||||+|.+|..+|+.|...| .+|.+|||++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            368999999999999999999999 9999999986

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.17  E-value=0.00031  Score=57.34  Aligned_cols=36  Identities=28%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++||||| +|.||..+|+.++..|.+|.+|||+..
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            357899999 999999999999999999999998754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.15  E-value=0.00038  Score=47.91  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      .+++|+|+|.|.||+.+++.|...| .+|..++|++..
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~   41 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAA   41 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHH
Confidence            4689999999999999999999999 899999997543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.10  E-value=0.00032  Score=54.60  Aligned_cols=36  Identities=31%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++|+|+|+|.+|+.+|+.+...|.+|.+|+|+..
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457899999999999999999999999999999754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.00  E-value=0.00037  Score=57.03  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=32.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++|||||+|.+|+.+|+.+...|.+|.+|||+...
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~   65 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK   65 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            68999999999999999999999999999998654

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.99  E-value=0.00084  Score=48.88  Aligned_cols=48  Identities=15%  Similarity=0.235  Sum_probs=39.3

Q ss_pred             CCCCCEEEEEcC----CHHHHHHHHHHccCCCEEEEEcCCCCCcccccccCC
Q 044056          140 TLLGKTVFISGF----GNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS  187 (189)
Q Consensus       140 ~l~gktvGIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~  187 (189)
                      -.+-++|+|||+    |++|..+++.+...|++|+.+++...+..+..+++|
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s   62 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRS   62 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSS
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCC
Confidence            455789999999    999999999999999999999998766666666654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.96  E-value=0.00051  Score=56.48  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ..++|||||+|.+|..+|+.|...|. +|.+|||++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            45799999999999999999999999 999999973

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.83  E-value=0.00043  Score=53.97  Aligned_cols=36  Identities=36%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEE-EcCCCCCc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIA-AKRSWASH  179 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~-~~r~~~~~  179 (189)
                      ++|||||+|++|+.+|+.+...|.+|.+ |+|++...
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~   60 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASL   60 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHH
Confidence            6899999999999999999988999999 99986543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.81  E-value=0.0014  Score=52.68  Aligned_cols=39  Identities=13%  Similarity=0.163  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.++++.|+|.|.+|+++|+.|...|.+|..++|+..
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~  153 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS  153 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            467899999999999999999999999999999999853

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.80  E-value=0.0017  Score=53.15  Aligned_cols=39  Identities=26%  Similarity=0.233  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .++.+++++|+|.|.+|++++..|...|+ +|..++|+..
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~  176 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVE  176 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHH
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            46789999999999999999999999998 9999999853

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.76  E-value=0.00089  Score=58.48  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...+.++|||||+|.+|+.+|+.|...|.+|.+|||++..
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~   50 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREK   50 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHH
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            4456789999999999999999999999999999998654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.66  E-value=0.0016  Score=52.93  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++|+|||+|.+|..+|..+..-|.+|+.||++...
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~   50 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI   50 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            68999999999999999999889999999998543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.66  E-value=0.001  Score=54.09  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=37.7

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~  179 (189)
                      +.++.||++.|+|.|.+|++++..|...|+ +|..++|+..+.
T Consensus       112 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a  154 (277)
T 3don_A          112 YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRF  154 (277)
T ss_dssp             STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGG
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence            456889999999999999999999999999 899999987553

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.61  E-value=0.0012  Score=48.47  Aligned_cols=45  Identities=13%  Similarity=0.083  Sum_probs=38.0

Q ss_pred             CCEEEEEcC----CHHHHHHHHHHccCCCEEEEEcCCC--CCcccccccCC
Q 044056          143 GKTVFISGF----GNIGVELAKRLRPFGVKIIAAKRSW--ASHSQVCCQSS  187 (189)
Q Consensus       143 gktvGIvG~----G~IG~~vA~~l~afG~~V~~~~r~~--~~~~~~~~~~~  187 (189)
                      -++|+|||+    |++|..+++.+...|++|+.+++..  .+..+..+++|
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~s   63 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYAT   63 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCC
Confidence            478999999    8999999999999999999999987  55566666554

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.40  E-value=0.0043  Score=50.43  Aligned_cols=41  Identities=24%  Similarity=0.299  Sum_probs=36.9

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      +.++.++++.|+|.|.+|++++..|...|+ +|..++|+..+
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~  162 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAK  162 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHH
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence            457899999999999999999999999997 89999998643

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.33  E-value=0.0051  Score=49.81  Aligned_cols=38  Identities=26%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.+|++.|+|.|.||+++|+.|...| +|..++|+..
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~  161 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVE  161 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHH
Confidence            3678999999999999999999999999 9999999753

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.33  E-value=0.0029  Score=50.94  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.++.+++++|+|.|.+|+++|..|...|.+|..++|+..
T Consensus       114 ~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~  153 (272)
T 1p77_A          114 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFS  153 (272)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3467899999999999999999999999999999999853

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.31  E-value=0.0045  Score=50.07  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=34.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ++++.|+|.|.+|++++..|...|.+|..++|+..+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka  154 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGL  154 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            8999999999999999999999999999999997654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.31  E-value=0.0026  Score=52.39  Aligned_cols=36  Identities=28%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCC----CEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFG----VKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~  177 (189)
                      ...+|||||+|.+|..+|+.|..-|    .+|.+|+|+..
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            3468999999999999999998888    78999999864

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.29  E-value=0.0097  Score=51.36  Aligned_cols=54  Identities=24%  Similarity=0.398  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ++++-=++..+-.+++.    .+.++.|+||.|.|+|++|+.+|++|..+|++|++..
T Consensus       212 ~aTg~Gv~~~~~~~~~~----~g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavs  265 (440)
T 3aog_A          212 DATGRGVFITAAAAAEK----IGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQ  265 (440)
T ss_dssp             THHHHHHHHHHHHHHHH----HTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cchHHHHHHHHHHHHHh----cCCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEE
Confidence            45565566566666654    4568999999999999999999999999999999443

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.22  E-value=0.0058  Score=50.68  Aligned_cols=39  Identities=26%  Similarity=0.357  Sum_probs=35.9

Q ss_pred             CCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEcCC
Q 044056          137 TGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~r~  175 (189)
                      .+.++.|+++.|||.|.+ |+.+|+.|.+.|++|...+|+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            466899999999999986 999999999999999999886

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.20  E-value=0.0061  Score=52.98  Aligned_cols=64  Identities=17%  Similarity=0.093  Sum_probs=46.9

Q ss_pred             CchhHHHHHHHHHHHHHhcCC---CCC-------CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          114 NAASCAELSIYLMLGLLRKHI---VPT-------GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       114 ~a~~vAE~~l~liL~~~R~~~---~~~-------~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      |-..|.|.+.++++...|...   .+.       ...-.=++|||||+|.+|..+|..+..-|.+|..||++..
T Consensus        15 ~~~~~~~~~~~~~~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           15 NLYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             GGGGCBCHHHHHHHHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             chhhhhHHHHHHHHhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            445666777777777666653   111       1111227899999999999999999989999999999865

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.18  E-value=0.0054  Score=52.90  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=32.9

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++..-++|+|||+|.+|..+|..+.. |.+|++||+.+..
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~   70 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAK   70 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHH
Confidence            4566667899999999999999999988 9999999998654

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.18  E-value=0.0096  Score=51.13  Aligned_cols=54  Identities=30%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ++++--++..+-..+|.    .+.++.|+||.|.|+|++|+.+|++|..+|++|++..
T Consensus       187 ~aTg~Gv~~~~~~~~~~----~g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavs  240 (421)
T 1v9l_A          187 YATGFGVAVATREMAKK----LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS  240 (421)
T ss_dssp             GHHHHHHHHHHHHHHHH----HHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cchHHHHHHHHHHHHHh----cCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence            45666666666666665    4568999999999999999999999999999999543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.17  E-value=0.0058  Score=50.53  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +.++.||++.|+|.|.+|++++..|...|+ +|..++|+.
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            567899999999999999999999999999 899999983

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.16  E-value=0.0064  Score=49.17  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=37.3

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .+.++.||++.|+|.|.+|++++..|...|+ +|..++|+..+
T Consensus       114 ~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~  156 (272)
T 3pwz_A          114 LGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAK  156 (272)
T ss_dssp             SCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHH
T ss_pred             cCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            3567899999999999999999999999996 89999998643

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.16  E-value=0.0041  Score=51.78  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=30.9

Q ss_pred             EEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          145 TVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       145 tvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +|+|||+|.+|..+|..|..-|.+|.+|+|+..
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   49 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   49 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            899999999999999999988999999999753

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.16  E-value=0.0098  Score=51.09  Aligned_cols=55  Identities=18%  Similarity=0.240  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      .++++--++..+-..++.    .+.++.|+||.|.|+|++|+.+|++|..+|++|++..
T Consensus       188 ~~aTg~Gv~~~~~~~~~~----~g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavs  242 (421)
T 2yfq_A          188 NEATGFGVAVVVRESAKR----FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIA  242 (421)
T ss_dssp             TTHHHHHHHHHHHHHHHH----TTCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECC
T ss_pred             CcchHHHHHHHHHHHHHh----cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence            356676777677777775    4568999999999999999999999999999999554

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.13  E-value=0.012  Score=50.50  Aligned_cols=56  Identities=20%  Similarity=0.448  Sum_probs=45.5

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEE-EEcC
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII-AAKR  174 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~-~~~r  174 (189)
                      .++++--++..+-..++.    .+.++.|+||.|.|+|++|+.+|+.|...|++|+ ..|+
T Consensus       194 ~~aTg~Gv~~~~~~~~~~----~g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          194 DDAAGLGALLVLEALAKR----RGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             SCHHHHHHHHHHHHHHHH----HTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             ccchHHHHHHHHHHHHHh----cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            356666666666666665    4568999999999999999999999999999999 4444

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.10  E-value=0.015  Score=50.33  Aligned_cols=54  Identities=24%  Similarity=0.409  Sum_probs=43.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ++++--++..+-.+++.    .+.++.|+||.|=|+|++|+.+|++|...|++|++.+
T Consensus       212 ~aTg~Gv~~~~~~~~~~----~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavs  265 (450)
T 4fcc_A          212 EATGYGLVYFTEAMLKR----HGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITAS  265 (450)
T ss_dssp             THHHHHHHHHHHHHHHH----TTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CceeeeHHHHHHHHHHH----cCCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEe
Confidence            45555555555555554    4568999999999999999999999999999998765

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.05  E-value=0.0053  Score=47.54  Aligned_cols=43  Identities=21%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .....+.|++|.|.|. |.||+++++.|..-|.+|++.+|+..+
T Consensus        14 ~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   57 (236)
T 3e8x_A           14 RENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ   57 (236)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             ccccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH
Confidence            3456899999999997 999999999999999999999998654

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.02  E-value=0.0076  Score=51.48  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -+.+++|+|+|-|.+|+.+++.++.+|.+|+.+|+.+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            46799999999999999999999999999999997654

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.00  E-value=0.01  Score=50.98  Aligned_cols=55  Identities=29%  Similarity=0.399  Sum_probs=45.5

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      .++++--++..+-..++.    .+.++.|+||.|-|+|++|+.+|++|..+|++|++.+
T Consensus       197 ~~aTg~Gv~~~~~~~~~~----~g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavs  251 (424)
T 3k92_A          197 ETATAQGVTICIEEAVKK----KGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGIS  251 (424)
T ss_dssp             TTHHHHHHHHHHHHHHHH----TTCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             cccHHHHHHHHHHHHHHH----cCCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            356777777777777775    3568999999999999999999999999999987543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.98  E-value=0.0086  Score=48.67  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .++.+|++.|+|.|.+|++++..|...|+ +|..++|+..+
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~  163 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR  163 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHH
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence            46889999999999999999999999999 69999998643

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=95.96  E-value=0.0065  Score=44.15  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=37.5

Q ss_pred             CCEEEEEcC----CHHHHHHHHHHccCCCEEEEEcCC--CCCcccccccCC
Q 044056          143 GKTVFISGF----GNIGVELAKRLRPFGVKIIAAKRS--WASHSQVCCQSS  187 (189)
Q Consensus       143 gktvGIvG~----G~IG~~vA~~l~afG~~V~~~~r~--~~~~~~~~~~~~  187 (189)
                      -++|.|||.    |+.|..+++.++..|++|+..++.  ..+..+..++.|
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~s   63 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVAS   63 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSS
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCC
Confidence            478999999    899999999999999998888887  555556666544

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.95  E-value=0.006  Score=50.94  Aligned_cols=37  Identities=30%  Similarity=0.414  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|++|.|+|.|.||..+++.++.+|++|++.+++...
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~  223 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSK  223 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            6899999999999999999999999999999987543

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.94  E-value=0.0064  Score=49.91  Aligned_cols=38  Identities=13%  Similarity=0.109  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHc-cCCC-EEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLR-PFGV-KIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~  178 (189)
                      ...++|||||+|.+|+.+++.+. .+|. +|..|||++..
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~  172 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKEN  172 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence            35789999999999999999986 4587 89999998543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=95.94  E-value=0.0087  Score=43.61  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=37.1

Q ss_pred             CCEEEEEcC----CHHHHHHHHHHccCCCEEEEEcCCCCCcccccccCC
Q 044056          143 GKTVFISGF----GNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS  187 (189)
Q Consensus       143 gktvGIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~  187 (189)
                      -++|+|||.    |++|..+++.++..|++|+..++...+..+..++.|
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~s   70 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPS   70 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSS
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCC
Confidence            478999999    799999999999999999888887655556666543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.92  E-value=0.0087  Score=49.44  Aligned_cols=40  Identities=23%  Similarity=0.333  Sum_probs=35.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      -.|.+|.|+|.|.||...++.++.+|++|++.+++..+.+
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~  214 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQ  214 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            3589999999999999999999999999999998766543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.92  E-value=0.0065  Score=47.80  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=37.8

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +...++.|++|.|||.|.+|...++.|...|++|..+++...
T Consensus        24 Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~   65 (223)
T 3dfz_A           24 TVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS   65 (223)
T ss_dssp             EEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred             ccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            345689999999999999999999999999999999998654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.91  E-value=0.0068  Score=49.95  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...+|+|||+|++|..+|..|..-|.+|..|+|++..
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~   49 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEI   49 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            3578999999999999999998889999999997543

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.91  E-value=0.022  Score=48.78  Aligned_cols=55  Identities=22%  Similarity=0.198  Sum_probs=45.0

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHcc-CCCEEEEEc
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRP-FGVKIIAAK  173 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~a-fG~~V~~~~  173 (189)
                      .++++-=++..+-..+|.    .+.++.|++|.|.|+|++|+.+|++|.. .|++|++..
T Consensus       185 ~~aTg~Gv~~~~~~~~~~----~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavs  240 (415)
T 2tmg_A          185 EEATGRGVKVCAGLAMDV----LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVS  240 (415)
T ss_dssp             TTHHHHHHHHHHHHHHHH----TTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHH----cCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEE
Confidence            356666666667677765    4568999999999999999999999998 999999543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.86  E-value=0.0083  Score=51.99  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      =++|||||+|.+|..+|..+..-|.+|+.||++..
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36899999999999999999999999999998753

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.82  E-value=0.0087  Score=48.70  Aligned_cols=41  Identities=12%  Similarity=0.090  Sum_probs=37.0

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      +.++.++++.|+|.|..|++++..|...|+ +|..++|+..+
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~k  158 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEK  158 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            456889999999999999999999999999 89999998643

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.81  E-value=0.006  Score=50.84  Aligned_cols=37  Identities=32%  Similarity=0.513  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.|++|.|+|.|.||..+++.++.+|++|++.+++.
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~  214 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE  214 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            5669999999999999999999999999999999876

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.80  E-value=0.011  Score=48.80  Aligned_cols=39  Identities=23%  Similarity=0.299  Sum_probs=36.1

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      +.++.||++.|+|.|.+|++++..|...|+ +|..++|+.
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            567899999999999999999999999999 799999983

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.75  E-value=0.0074  Score=48.26  Aligned_cols=38  Identities=21%  Similarity=0.290  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .+.| +++|+|.|..|++++..|...|+ +|..++|+..+
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~k  144 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIER  144 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHH
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            4678 99999999999999999999999 89999998643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.73  E-value=0.0056  Score=48.71  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +|..+|+..
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            46789999999999999999999999998 799999875

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.70  E-value=0.0088  Score=49.70  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=34.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .|++|.|+|.|.||...++.++.+|++|++.+++....
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~  216 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR  216 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            48999999999999999999999999999999876553

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.67  E-value=0.0087  Score=50.15  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++|+|||.|.+|..+|..|..-|.+|..|+|.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999999743

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.66  E-value=0.0047  Score=51.76  Aligned_cols=34  Identities=18%  Similarity=0.075  Sum_probs=30.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCC-------CEEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFG-------VKIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG-------~~V~~~~r~~~  177 (189)
                      ++|+|||+|.+|..+|..|..-|       .+|..|+|+..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999997666       89999999865

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.46  E-value=0.024  Score=49.25  Aligned_cols=53  Identities=21%  Similarity=0.359  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEE
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~  172 (189)
                      ++++--++..+-.+++.    .+.++.|+||.|-|+|++|+.+|++|..+|++|++.
T Consensus       229 ~aTg~Gv~~~~~~~l~~----~G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVav  281 (470)
T 2bma_A          229 EATGYGLVYFVLEVLKS----LNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTL  281 (470)
T ss_dssp             THHHHHHHHHHHHHHHT----TTCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEE
T ss_pred             ccchHHHHHHHHHHHHh----ccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            45555566566666664    357899999999999999999999999999999843

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.44  E-value=0.043  Score=44.56  Aligned_cols=57  Identities=14%  Similarity=0.101  Sum_probs=44.0

Q ss_pred             CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHH-HHHHHHHHccC--CCEEEEEcCCCCC
Q 044056          114 NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNI-GVELAKRLRPF--GVKIIAAKRSWAS  178 (189)
Q Consensus       114 ~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~I-G~~vA~~l~af--G~~V~~~~r~~~~  178 (189)
                      +...+++-++-++-.        .+.++.||++.|||.|+| |+.+|+.|...  |++|...+++.+.
T Consensus       137 ~~PcTp~gi~~ll~~--------~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~  196 (281)
T 2c2x_A          137 PLPCTPRGIVHLLRR--------YDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRD  196 (281)
T ss_dssp             CCCHHHHHHHHHHHH--------TTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSC
T ss_pred             CCCChHHHHHHHHHH--------cCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhH
Confidence            345566654444332        366899999999999986 99999999999  9999999876543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.42  E-value=0.012  Score=49.13  Aligned_cols=37  Identities=30%  Similarity=0.352  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++...
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~  230 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK  230 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4899999999999999999999999999999987554

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.40  E-value=0.013  Score=51.18  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHccC-CC-EEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPF-GV-KIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~af-G~-~V~~~~r~~~  177 (189)
                      ++|+|||+|.+|..+|..+... |. +|++||+...
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            6899999999999999999988 99 9999999877

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.38  E-value=0.02  Score=46.17  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=35.7

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.++.||++.|+| .|.||+++++.|...|++|+.++|+..
T Consensus       114 ~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD  154 (287)
T ss_dssp             TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH
Confidence            3457899999999 999999999999999999999999743

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.37  E-value=0.058  Score=43.96  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.++.|+++.|||.|+ +|+.+|+.|...|++|...+++.+.
T Consensus       153 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~  195 (288)
T 1b0a_A          153 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN  195 (288)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC
T ss_pred             cCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchh
Confidence            46789999999999998 5999999999999999999876543

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.34  E-value=0.016  Score=50.67  Aligned_cols=58  Identities=21%  Similarity=0.325  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          116 ASCAELSIYLMLGLLRKHI----VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~----~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ++++--++..+-.+++...    .....+|.|+||.|-|+|++|+..|+.|..+|++|++.+
T Consensus       213 eATg~GV~~~~~~~l~~~~~~~~~G~~~~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavs  274 (501)
T 3mw9_A          213 SATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVG  274 (501)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CchHHHHHHHHHHHHhhhHHHHHcCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4566556655554433210    111236999999999999999999999999999999753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.28  E-value=0.017  Score=47.10  Aligned_cols=42  Identities=24%  Similarity=0.236  Sum_probs=37.3

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...++.||++.|||.|. +|+.+|..|...|++|...+++.+.
T Consensus       154 ~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~  196 (285)
T 3p2o_A          154 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKD  196 (285)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSC
T ss_pred             hCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchh
Confidence            46789999999999998 5999999999999999999876543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.26  E-value=0.032  Score=45.33  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=37.3

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .....+.+++|.|.|. |.||+++++.|..-|.+|++.+|....
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~   56 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATG   56 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSS
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            4567899999999987 999999999999999999999986543

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=95.25  E-value=0.031  Score=48.38  Aligned_cols=52  Identities=33%  Similarity=0.590  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEE
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA  171 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~  171 (189)
                      ++++--++..+-..+|.    .+.++.|+||.|.|+|++|+.+|++|...|++|++
T Consensus       207 ~aTg~Gv~~~~~~~~~~----~G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVa  258 (449)
T 1bgv_A          207 EATGYGSVYYVEAVMKH----ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT  258 (449)
T ss_dssp             THHHHHHHHHHHHHHHH----TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             cchhHHHHHHHHHHHHH----ccCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            45666666666666665    35789999999999999999999999999999996

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.21  E-value=0.025  Score=48.98  Aligned_cols=55  Identities=20%  Similarity=0.346  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEE-EEcC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKII-AAKR  174 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~-~~~r  174 (189)
                      ++++--++..+-.+++.    .+.++.|+||.|-|+|++|+.+|+.|...|++|+ ..|.
T Consensus       216 ~aTg~Gv~~~~~~~~~~----~g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~  271 (456)
T 3r3j_A          216 EATGYGVVYFAENVLKD----LNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDS  271 (456)
T ss_dssp             THHHHHHHHHHHHHHHT----TTCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECS
T ss_pred             cccchHHHHHHHHHHHH----cCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            56777777777777775    3678999999999999999999999999999987 4443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.19  E-value=0.017  Score=48.13  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  232 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK  232 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            58999999999999999999999999 89999887654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.18  E-value=0.011  Score=44.50  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=32.8

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|.| .|.||+.+++.++..|++|++.+++..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~   74 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA   74 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            589999999 799999999999999999999998643

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.16  E-value=0.017  Score=47.96  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++..+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~  216 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKK  216 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHH
Confidence            6899999999999999999999999999999987644

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.13  E-value=0.019  Score=47.91  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|++|.|+|.|.||...++.++++|+ +|++.+++...
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  229 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK  229 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            58999999999999999999999999 89999987654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.13  E-value=0.021  Score=46.88  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.++.|+++.|||.|+ +|+.+|+.|...|++|...+++.+.
T Consensus       159 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~  201 (301)
T 1a4i_A          159 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH  201 (301)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS
T ss_pred             cCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCccc
Confidence            56789999999999997 6999999999999999999866443

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.12  E-value=0.019  Score=47.87  Aligned_cols=37  Identities=22%  Similarity=0.398  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|++|.|+|.|.||...++.++++|+ +|++.+++...
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  228 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK  228 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            58999999999999999999999999 89999987654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.07  E-value=0.021  Score=46.47  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=36.5

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++.||++.|||.|. +|+.+|..|...|++|...+++.+
T Consensus       155 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~  196 (285)
T 3l07_A          155 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT  196 (285)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence            46789999999999999 699999999999999999987543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.06  E-value=0.023  Score=46.97  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  203 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR  203 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            489999999999999999999999999999987644

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.01  E-value=0.024  Score=46.95  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|.+|.|+|.|.||...++.++++|+ +|++.+++..
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  207 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT  207 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            48999999999999999999999999 8999987654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.00  E-value=0.021  Score=46.99  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|+|.|.||..+++.++.+|++|++.+++..
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~  199 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE  199 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            479999999999999999999999999999998653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.99  E-value=0.023  Score=47.27  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            589999999999999999999999999999998743

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.98  E-value=0.024  Score=46.45  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .-..++|+|||.|.+|..+|..|..-|.+|..| +++
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            345689999999999999999999889999999 654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.96  E-value=0.03  Score=45.91  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=36.3

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...++.||++.|||.|. +|+.+|..|...|++|..++++.
T Consensus       159 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          159 CGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             HTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46789999999999998 69999999999999999998753

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.95  E-value=0.017  Score=48.11  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|++|.|+|.|.||...++.++++|+ +|++.+++..+
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  228 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK  228 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHH
Confidence            58999999999999999999999999 89999887554

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.94  E-value=0.014  Score=47.18  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|++|.|+|. |.||+.+++.++.+|++|++.+++..+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~  162 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK  162 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            5899999998 999999999999999999999987544

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.92  E-value=0.02  Score=47.28  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|++|.|+|.|.||..+++.++.+|+ +|++.+++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~  203 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDF  203 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            79999999999999999999999999 9999998743

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.89  E-value=0.018  Score=47.88  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|.+|.|+|.|.||...++.++++|+ +|++.+++..+
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~  227 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK  227 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            58999999999999999999999999 89999987654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.84  E-value=0.035  Score=45.20  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+.++.||++.|||.|. +|+.+|..|...|++|....++.+
T Consensus       155 ~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~  196 (286)
T 4a5o_A          155 TGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR  196 (286)
T ss_dssp             TTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc
Confidence            46789999999999998 799999999999999999987543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.84  E-value=0.025  Score=44.54  Aligned_cols=40  Identities=25%  Similarity=0.327  Sum_probs=35.6

Q ss_pred             CCCCCCCEEEEEcC-C-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-G-NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G-~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|- | .||+++|+.|..-|++|+..+|+..
T Consensus        17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~   58 (266)
T 3o38_A           17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER   58 (266)
T ss_dssp             CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHH
Confidence            45689999999998 8 5999999999999999999998754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.81  E-value=0.023  Score=46.60  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.|++|.|.|.|.||...++.++.+|++|++.+++..
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  201 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDA  201 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3589999999999999999999999999999988654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.79  E-value=0.026  Score=45.78  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      -.|++|.|+|.|.||...++.++.+|++|++.+ +..+
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~  177 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLS  177 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chhh
Confidence            358999999999999999999999999999998 5443

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.033  Score=45.90  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|++|.|+|. |.||+.+++.++..|++|++.+++...
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~  206 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGK  206 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHH
Confidence            5899999999 899999999999999999999987543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.78  E-value=0.021  Score=52.20  Aligned_cols=34  Identities=26%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++|||||+|.+|..+|..+..-|.+|+.||++..
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            5799999999999999999988999999999754

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=94.71  E-value=0.036  Score=44.93  Aligned_cols=37  Identities=16%  Similarity=0.059  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.||++.|||.|. +|+.+|+.|...|++|..++++.+
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~  185 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTK  185 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            9999999999997 799999999999999999987543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.54  E-value=0.033  Score=45.49  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|++|.|.|. |.||+.+++.++.+|++|++.+++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~  180 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD  180 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999998 9999999999999999999999864

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.54  E-value=0.027  Score=46.31  Aligned_cols=37  Identities=32%  Similarity=0.447  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|++|.|+|.|.||..+++.++++|+ +|++.+++..+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~  201 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYR  201 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence            78999999999999999999999999 99999987543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.54  E-value=0.028  Score=45.76  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=31.4

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ....+..+|+|.|.|. |.||+.+++.|..-|.+|++.+|....
T Consensus        12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            4567889999999997 999999999999999999999998654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.52  E-value=0.023  Score=46.83  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      -.|++|.|.|. |.||..+++.++.+|++|++.+++..+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~  196 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA  196 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            35899999998 999999999999999999999987544

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.52  E-value=0.035  Score=42.76  Aligned_cols=39  Identities=31%  Similarity=0.412  Sum_probs=34.3

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCCC--EEEEEcCCCCCc
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFGV--KIIAAKRSWASH  179 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG~--~V~~~~r~~~~~  179 (189)
                      +.++++.|.| .|.||+++++.|..-|.  +|++.+|+..+.
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~   57 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF   57 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence            4579999999 79999999999999999  999999986543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.46  E-value=0.022  Score=47.60  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~  179 (189)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~  231 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKY  231 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence            58999999999999999999999999 899999876543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.46  E-value=0.03  Score=47.14  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  221 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPE  221 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence            58999999999999999999999999 9999998654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.45  E-value=0.029  Score=45.89  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|.|. |.||+.+++.++.+|++|++.+++..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  185 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE  185 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999 99999999999999999999998753

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=94.42  E-value=0.019  Score=52.45  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      =++|||||+|.+|..+|..+..-|.+|+.||++..
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            35799999999999999999988999999999754

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.41  E-value=0.04  Score=46.24  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|++|.|+|.|.||...++.++++|+ +|++.+++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~  221 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA  221 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHH
Confidence            58999999999999999999999999 7999987653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.41  E-value=0.026  Score=46.34  Aligned_cols=38  Identities=18%  Similarity=0.304  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          142 LGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .|++|.|+|.| .||..+++.++.+|++|++.+++....
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~  182 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT  182 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            58999999998 999999999999999999999876543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.40  E-value=0.033  Score=45.83  Aligned_cols=37  Identities=22%  Similarity=0.395  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccC--CCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPF--GVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~af--G~~V~~~~r~~~~  178 (189)
                      .|++|.|+|.|.||...++.++.+  |++|++.+++..+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~  208 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKH  208 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence            689999999999999999999999  9999999986543

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.34  E-value=0.059  Score=44.96  Aligned_cols=61  Identities=25%  Similarity=0.299  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHHHH--hcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          116 ASCAELSIYLMLGLL--RKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       116 ~~vAE~~l~liL~~~--R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ...||.++-+=|-+.  |-++......|++++|.|||+|.+|.++|+.|...|. ++..+|+..
T Consensus         5 ~~~~~~~~~lnl~lm~wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A            5 LKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            356777766555443  4444334467899999999999999999999999998 588888754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.34  E-value=0.044  Score=46.19  Aligned_cols=38  Identities=32%  Similarity=0.370  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      --.|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  249 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEV  249 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            3458999999999999999999999999 8999987654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.34  E-value=0.065  Score=42.92  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+|+|.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       142 ~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          142 FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            45579999999999999999999999999999877643

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.32  E-value=0.034  Score=44.21  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ..|++++|.|+|+|.+|.++|+.|...|. ++..+|+..
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46789999999999999999999999998 688887653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.32  E-value=0.027  Score=48.95  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=32.0

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPF-GVKIIAAKRSWA  177 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~  177 (189)
                      .....+.+++|+|+|.|.+|+.+++.|... |.+|..++|+..
T Consensus        16 ~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~   58 (467)
T 2axq_A           16 HIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLA   58 (467)
T ss_dssp             -------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHH
T ss_pred             ccccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            345678899999999999999999999876 789999999754

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.30  E-value=0.053  Score=42.46  Aligned_cols=41  Identities=20%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ....++.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3456899999999985 8999999999999999999999874

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.23  E-value=0.043  Score=46.04  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=26.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHccC-CCEEEEEcC
Q 044056          144 KTVFISGFGNIGVELAKRLRPF-GVKIIAAKR  174 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r  174 (189)
                      .+|||+|+|+||+++.|.|..- +++|.+.+-
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaind   49 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIND   49 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            3899999999999999998765 688777764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.23  E-value=0.061  Score=44.47  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCCHHHHHH-HHHH-ccCCCE-EEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVEL-AKRL-RPFGVK-IIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~v-A~~l-~afG~~-V~~~~r~~~  177 (189)
                      ..+++|.|+|.|.||... ++.+ +.+|++ |++.+++..
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~  210 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR  210 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence            344999999999999999 9999 999998 999998765

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.18  E-value=0.036  Score=45.47  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|.|. |.||+.+++.++.+|++|++.+++..
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~  191 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE  191 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999997 99999999999999999999998643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.17  E-value=0.044  Score=45.22  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            48999999999999999999999999 7999998654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.16  E-value=0.047  Score=42.21  Aligned_cols=39  Identities=26%  Similarity=0.127  Sum_probs=33.6

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCC-CEEEEEcCCCCCc
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFG-VKIIAAKRSWASH  179 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG-~~V~~~~r~~~~~  179 (189)
                      ...|+|.|.| .|.||+++++.|..-| .+|+.++|+..+.
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            3468999999 7999999999999999 8999999986543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.12  E-value=0.053  Score=45.18  Aligned_cols=36  Identities=33%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++..
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  218 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQAT  218 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            48999999999999999999999999 8999987653

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=94.11  E-value=0.039  Score=45.73  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPF-GVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~  177 (189)
                      .|.+|.|+|.|.||...++.++.+ |++|++.+++..
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~  222 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE  222 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            589999999999999999999999 999999998654

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.09  E-value=0.049  Score=43.28  Aligned_cols=43  Identities=21%  Similarity=0.355  Sum_probs=35.5

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ...++.||++.|.|- |.||+++|+.|..-|++|+..+|.....
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~   51 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD   51 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc
Confidence            456889999999986 6899999999999999999999876543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.08  E-value=0.09  Score=41.84  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..+++|.|||-|.||-++|..+..+|.+|..+.|....
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            46899999999999999999999999999998876543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.07  E-value=0.041  Score=45.75  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~  226 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES  226 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence            48999999999999999999999999 6999987654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.06  E-value=0.057  Score=44.46  Aligned_cols=36  Identities=25%  Similarity=0.493  Sum_probs=33.1

Q ss_pred             CCCEEEEE-cCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFIS-GFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIv-G~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|+ |.|.||...++.++.+|++|++.+++..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~  186 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNE  186 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            68999999 7999999999999999999999998643

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.05  E-value=0.089  Score=44.73  Aligned_cols=115  Identities=13%  Similarity=0.180  Sum_probs=76.0

Q ss_pred             HHhhcCCCeE--EecCCCCCHHHHhcC----CCCeEEEEcCCCCCc-CC-hhHHhh-CCeEEEecCCCCCCCchhHHHHH
Q 044056           52 MHSLYASYGT--SEQMIASDSNVITRA----NPMNLIIRFRVGLEG-VD-IDALTN-CAIKAARILGDVSGNAASCAELS  122 (189)
Q Consensus        52 ~~~~~~~adv--i~~~~~~~~~~l~~~----p~Lk~I~~~~aG~d~-id-~~~~~~-~gI~v~n~~g~~~~~a~~vAE~~  122 (189)
                      +...+.+.|+  +.....-..|+++..    |..-.|+.--.+-.+ +. ++..++ .+|++.|. +.     .-+|=-+
T Consensus        98 Lf~~~agid~~pi~Ldv~~~dEfv~~v~~~~p~F~~I~lED~~~p~~f~il~~~r~~~~ipvf~D-Di-----qGTa~V~  171 (398)
T 2a9f_A           98 LFKAFAGVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKECHIPVFHD-DQ-----HGTAIVV  171 (398)
T ss_dssp             HHHHHSSCEEEEEECCCCCHHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEH-HH-----HHHHHHH
T ss_pred             HHHhccCCceeeeEeCCCCHHHHHHHHHHcCCceeEeccccCCChHHHHHHHHhhhcCCcceecc-hh-----hhHHHHH
Confidence            3344566666  443333344443332    343445444332222 11 123333 36999994 43     5567778


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          123 IYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       123 l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ++.+++..|    ..+..+...+|-|+|.|..|..+|+.+.++|. +|+.+|+..
T Consensus       172 lAall~al~----l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          172 LAAIFNSLK----LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             HHHHHHHHH----TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             HHHHHHHHH----HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            888888887    35678999999999999999999999999999 899999974

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.04  E-value=0.041  Score=45.56  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~  177 (189)
                      .|++|.|+|.|.||...++.++.+|++ |++.+++..
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  215 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEG  215 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            489999999999999999999999998 999887653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.02  E-value=0.069  Score=45.28  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=52.7

Q ss_pred             CCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          100 CAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       100 ~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      .+|++.|. +.     +.+|=-+++.+++..|-    .+..+.+.+|.|+|.|..|..+|+.+.+.|. +|+.+|++
T Consensus       159 ~~Ipvf~D-Di-----qGTasV~lAal~~A~~i----~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          159 MNIPVFHD-DQ-----QGTAVVVSAAFLNALKL----TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CSSCEEEH-HH-----HHHHHHHHHHHHHHHHH----HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cCcceecc-cc-----ccHHHHHHHHHHHHHHH----hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            36899883 33     44555566666666652    4558999999999999999999999999999 79999998

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.98  E-value=0.067  Score=43.08  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcCC---HHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGFG---NIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G---~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.||++.|.|-+   .||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            456899999999986   899999999999999999999874

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.96  E-value=0.065  Score=43.51  Aligned_cols=41  Identities=29%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ....+.+++|.|.| .|.||+.+++.|..-|.+|++.+|...
T Consensus        15 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   56 (333)
T 2q1w_A           15 VPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT   56 (333)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             eeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            44567899999998 799999999999989999999998754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.95  E-value=0.055  Score=45.22  Aligned_cols=37  Identities=32%  Similarity=0.369  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      .|++|.|+|.|.||...++.++.+| .+|++.+++..+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  232 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR  232 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHH
Confidence            5899999999999999999999999 599999986543

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.93  E-value=0.056  Score=42.88  Aligned_cols=44  Identities=27%  Similarity=0.460  Sum_probs=35.3

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      ....+.||++.|.|- |.||+++|+.|..-|++|+..+|......
T Consensus        22 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~   66 (266)
T 3uxy_A           22 SMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA   66 (266)
T ss_dssp             ----CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC
T ss_pred             hhhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            345789999999986 68999999999999999999999765543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.93  E-value=0.058  Score=44.64  Aligned_cols=36  Identities=25%  Similarity=0.573  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|.|. |.||+.+++.++..|++|++.+++..
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~  206 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE  206 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh
Confidence            4899999998 99999999999999999999998643

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=93.86  E-value=0.05  Score=45.62  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=26.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      ..+|||.|||+||+.+.|.+...+++|.+.+.
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~~~~ivaInd   52 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFERGIDIVAIND   52 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CeEEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence            46899999999999999998766889876653

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=93.86  E-value=0.075  Score=41.49  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=35.9

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ..++.+|++.|.| .|.||+++|+.|..-|++|+..+|+....
T Consensus        10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~   52 (247)
T 1uzm_A           10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   52 (247)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            3468899999997 58999999999999999999999876543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.84  E-value=0.041  Score=44.91  Aligned_cols=40  Identities=25%  Similarity=0.289  Sum_probs=34.1

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ....|++++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus        30 ~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           30 DYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             --CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4678999999999999999999999998886 688888654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.81  E-value=0.11  Score=43.05  Aligned_cols=42  Identities=31%  Similarity=0.410  Sum_probs=37.3

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ....+.||++.|.|- |.||+++|+.|..-|++|+..+|+..+
T Consensus        39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            456799999999985 789999999999999999999998664

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.81  E-value=0.043  Score=44.86  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=33.6

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.|++|.|+| .|.||..+++.++.+|++|++.+++..
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  184 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE  184 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3589999999 899999999999999999999998643

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.78  E-value=0.043  Score=44.20  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .++++.|+|.|..|++++..|...|+ +|..++|+..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~  154 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK  154 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            57899999999999999999999998 7999999854

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.72  E-value=0.074  Score=44.96  Aligned_cols=35  Identities=14%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+++|+|+|-|.+|+.+++.++.+|.+|+.+| +.
T Consensus        22 m~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           22 WNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            458999999999999999999999999999999 53

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.63  E-value=0.08  Score=40.99  Aligned_cols=40  Identities=25%  Similarity=0.440  Sum_probs=35.6

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~   49 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEA   49 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHH
Confidence            35689999999986 89999999999999999999998754

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.58  E-value=0.053  Score=46.85  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +-.+|+|||+|.+|.-+|..+...|.+|+++|.....
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~k   56 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSI   56 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            3469999999999999999999899999999986543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.55  E-value=0.046  Score=43.63  Aligned_cols=41  Identities=27%  Similarity=0.334  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+....
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~   70 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGST   70 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            3688999999985 7899999999999999999999976543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.54  E-value=0.092  Score=41.55  Aligned_cols=42  Identities=21%  Similarity=0.386  Sum_probs=35.1

Q ss_pred             CCCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          136 PTGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       136 ~~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .....+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        14 ~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   56 (267)
T 1vl8_A           14 KEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   56 (267)
T ss_dssp             ---CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            345688999999997 579999999999999999999998743

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.50  E-value=0.068  Score=42.56  Aligned_cols=40  Identities=35%  Similarity=0.532  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        23 ~~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~   63 (286)
T 1xu9_A           23 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   63 (286)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             hhhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34588999999987 89999999999999999999998753

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.49  E-value=0.044  Score=44.69  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|+| .|.||+.+++.++.+|++|++.+++..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  176 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE  176 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            589999999 899999999999999999999998653

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.46  E-value=0.051  Score=43.40  Aligned_cols=40  Identities=28%  Similarity=0.348  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++.||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   68 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDA   68 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4789999999985 789999999999999999999997543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=93.46  E-value=0.071  Score=41.96  Aligned_cols=42  Identities=21%  Similarity=0.476  Sum_probs=35.5

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ....+.||++.|.| .|.||+++|+.|..-|++|+..+|+...
T Consensus        23 ~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   65 (262)
T 3rkr_A           23 HMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEK   65 (262)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             hhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            34678999999998 5899999999999999999999987543

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=93.43  E-value=0.07  Score=45.25  Aligned_cols=35  Identities=9%  Similarity=0.118  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      --++-|+|.|.+|+++++.++.+|++|..+|+.+.
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh
Confidence            35899999999999999999999999999998654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.42  E-value=0.083  Score=42.94  Aligned_cols=38  Identities=26%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.+++|.|.| .|.||+.+++.|..-|.+|++.+|....
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   61 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTG   61 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            4579999999 6999999999999999999999997653

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=93.39  E-value=0.081  Score=43.43  Aligned_cols=42  Identities=24%  Similarity=0.268  Sum_probs=34.1

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccC-CCEEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPF-GVKIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~~~~  179 (189)
                      ...+.+++|.|.| .|.||+.+++.|..- |.+|++.+|+....
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   62 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL   62 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTT
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhh
Confidence            3457789999999 799999999999877 89999999986553

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.38  E-value=0.13  Score=41.32  Aligned_cols=40  Identities=30%  Similarity=0.329  Sum_probs=35.5

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            45789999999985 78999999999999999999988754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=93.37  E-value=0.062  Score=44.41  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=33.0

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|.| .|.||+.+++.++..|++|++.+++..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~  198 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQK  198 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            589999999 799999999999999999999998643

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.37  E-value=0.055  Score=44.46  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|+|. |.||+.+++.++.+|++|++.+++..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~  202 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED  202 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999 99999999999999999999998643

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=93.36  E-value=0.12  Score=40.71  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=33.3

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .....+.+|++.|.|- |.||+++|+.|..-|.+|+..+|+..+
T Consensus        14 ~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   57 (253)
T 2nm0_A           14 LVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEP   57 (253)
T ss_dssp             ------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHh
Confidence            3456788999999974 799999999999999999999987654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=93.36  E-value=0.079  Score=42.16  Aligned_cols=39  Identities=26%  Similarity=0.347  Sum_probs=34.3

Q ss_pred             CCCCCCCEEEEEcC-CH--HHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGF-GN--IGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~--IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.||++.|.|- |.  ||+++|+.|..-|++|+..+|..
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            45788999999996 45  99999999999999999999876

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.35  E-value=0.062  Score=44.42  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=32.9

Q ss_pred             CCCEEEEE-cCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFIS-GFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIv-G~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|. |.|.||..+++.++..|++|++.+++..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  203 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTG  203 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            58999999 7899999999999999999999998653

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.31  E-value=0.12  Score=40.94  Aligned_cols=40  Identities=20%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.+|++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus        26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   66 (272)
T 1yb1_A           26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   66 (272)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHH
Confidence            4568999999997 689999999999999999999998753

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=93.31  E-value=0.056  Score=42.13  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=24.1

Q ss_pred             CEEEEEcCCHHHHHHHHH--HccCCCEEE-EEcCCCCCc
Q 044056          144 KTVFISGFGNIGVELAKR--LRPFGVKII-AAKRSWASH  179 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~--l~afG~~V~-~~~r~~~~~  179 (189)
                      .+++|+|.|++|+++|+.  ....|+++. ++|..+...
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~  124 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKI  124 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTT
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHH
Confidence            579999999999999994  446688855 667665543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=93.26  E-value=0.11  Score=41.56  Aligned_cols=42  Identities=26%  Similarity=0.334  Sum_probs=36.5

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...++.||++.|.|- |.||+++|+.|..-|++|+..+|+..+
T Consensus        10 ~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~   52 (291)
T 3rd5_A           10 DLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRK   52 (291)
T ss_dssp             GCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             hccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            345789999999985 789999999999999999999997543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.25  E-value=0.046  Score=45.39  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=32.6

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|++|.|+| .|.||..+++.++.+|++|++.+++.
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  198 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD  198 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence            589999999 79999999999999999999999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.25  E-value=0.047  Score=44.46  Aligned_cols=35  Identities=14%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|++|.|.| .|.||+.+++.++..|++|++.+++.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~  175 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA  175 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 79999999999999999999999864

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=93.24  E-value=0.086  Score=41.06  Aligned_cols=40  Identities=23%  Similarity=0.416  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..+
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~   50 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   50 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchh
Confidence            457899999997 6799999999999999999999986543

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=93.21  E-value=0.12  Score=46.43  Aligned_cols=61  Identities=23%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHH--HHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          116 ASCAELSIYLML--GLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       116 ~~vAE~~l~liL--~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ...||.+.-+-|  +-.|-++......|++++|.|||+|.+|.++|+.|...|. ++..+|...
T Consensus       297 ~~la~~~~~Lnlklm~wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          297 LKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHHHhhhhhhhhHHHHHhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            567777766644  3345544444457999999999999999999999999998 688888754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=93.19  E-value=0.12  Score=40.28  Aligned_cols=42  Identities=17%  Similarity=0.270  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      .+-.+|++.|.|- |.||+++|+.|..-|++|+..+|+..+..
T Consensus        18 ~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~   60 (251)
T 3orf_A           18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA   60 (251)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc
Confidence            3445899999985 78999999999999999999999876543

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.18  E-value=0.072  Score=43.80  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCC-HHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056          142 LGKTVFISGFG-NIGVELAKRLRPF-GVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G-~IG~~vA~~l~af-G~~V~~~~r~~~  177 (189)
                      .|++|.|.|.| .||+.+++.++.. |++|++.+++..
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~  207 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE  207 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            58999999999 9999999999998 999999998653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=93.13  E-value=0.11  Score=42.09  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.+++|.|.|. |.||+.+++.|..-|.+|++.+|...
T Consensus        22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   62 (343)
T 2b69_A           22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT   62 (343)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             ccccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            35677899999997 99999999999988999999998643

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.12  E-value=0.1  Score=43.06  Aligned_cols=38  Identities=21%  Similarity=0.166  Sum_probs=33.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCcc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASHS  180 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~  180 (189)
                      .++|+|+|.|.+|..+|..+..-|. +|..||+.....+
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~   52 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQ   52 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence            4799999999999999999987787 9999999865443

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=93.11  E-value=0.076  Score=42.32  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcC---CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGF---GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~---G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   57 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP   57 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            488999999997   6999999999999999999999875

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=93.09  E-value=0.13  Score=40.75  Aligned_cols=39  Identities=26%  Similarity=0.464  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        27 m~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   66 (279)
T 1xg5_A           27 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   66 (279)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCh
Confidence            3468999999996 58999999999999999999999874

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=93.08  E-value=0.087  Score=41.24  Aligned_cols=40  Identities=20%  Similarity=0.225  Sum_probs=35.4

Q ss_pred             CCCCCCCCEEEEEcC---CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGF---GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~---G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ....+.+|++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            8 HMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             -CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            456889999999996   5899999999999999999998874

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=92.96  E-value=0.055  Score=43.70  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=36.6

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...++.||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus        35 ~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   77 (293)
T 3rih_A           35 VMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRE   77 (293)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            456789999999976 689999999999999999999987654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=92.96  E-value=0.13  Score=42.49  Aligned_cols=40  Identities=25%  Similarity=0.427  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      ..+.+++|.|.| .|.||+.+++.|..-| .+|++.+|....
T Consensus        28 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (377)
T 2q1s_A           28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSA   69 (377)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTC
T ss_pred             HHhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCC
Confidence            357899999999 5999999999999899 999999987654

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=92.92  E-value=0.068  Score=41.50  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=26.3

Q ss_pred             CEEEEEcCCHHHHHHHHH--HccCCCEEE-EEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKR--LRPFGVKII-AAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~--l~afG~~V~-~~~r~~~~  178 (189)
                      ++++|+|.|++|+.+++.  ... |+++. ++|..+..
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k  117 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEK  117 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTT
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHH
Confidence            689999999999999995  345 88855 56665543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=92.92  E-value=0.089  Score=45.53  Aligned_cols=37  Identities=35%  Similarity=0.470  Sum_probs=33.1

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      ..-|.||||+|||||.-|.+=|.-|+--|.+|++--|
T Consensus        32 ~~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr   68 (491)
T 3ulk_A           32 ASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR   68 (491)
T ss_dssp             TGGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             hHHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeC
Confidence            4578999999999999999999999999999877655

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=92.90  E-value=0.13  Score=41.36  Aligned_cols=40  Identities=15%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|. |.||+++|+.|..-|++|+..+|+..
T Consensus        26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~   66 (301)
T 3tjr_A           26 LSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQP   66 (301)
T ss_dssp             CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34689999999986 78999999999999999999998754

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=92.89  E-value=0.12  Score=40.80  Aligned_cols=41  Identities=27%  Similarity=0.336  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ..+.+|++.|.|- |.||+++|+.|..-|++|+..+|+..+.
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~   65 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS   65 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc
Confidence            3578999999985 7899999999999999999999986553

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=92.89  E-value=0.089  Score=43.24  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccC-CC-EEEEEcCCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPF-GV-KIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~af-G~-~V~~~~r~~~  177 (189)
                      ...+.+|+|.|.| .|.||+++++.|... |. +|++++|...
T Consensus        16 ~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~   58 (344)
T 2gn4_A           16 QNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL   58 (344)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHH
T ss_pred             HHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChh
Confidence            3457899999999 699999999999887 98 9999999743

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=92.88  E-value=0.074  Score=46.30  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHH-HHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVE-LAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|+|-|||.|.+|.. +|+.|+..|++|.++|....
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            589999999999996 89999999999999997643

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=92.88  E-value=0.077  Score=41.63  Aligned_cols=40  Identities=28%  Similarity=0.419  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEcCC---HHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFG---NIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G---~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++.||++.|.|-+   .||+++|+.|..-|++|+..+++..+
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~   58 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQ   58 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSS
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcch
Confidence            36889999999975   89999999999999999999887654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.86  E-value=0.11  Score=41.76  Aligned_cols=41  Identities=27%  Similarity=0.359  Sum_probs=34.8

Q ss_pred             CCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ....|.||++.|-|-+ .||+++|+.|..-|++|+..+|+..
T Consensus        23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~   64 (273)
T 4fgs_A           23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKD   64 (273)
T ss_dssp             --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3456999999999864 6999999999999999999998754

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.86  E-value=0.11  Score=41.69  Aligned_cols=39  Identities=28%  Similarity=0.295  Sum_probs=33.9

Q ss_pred             CCCCCCCEEEEEcCC-H--HHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGFG-N--IGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G-~--IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.||++.|.|-+ .  ||+++|+.|..-|++|+..+|+.
T Consensus        26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            346899999999974 4  99999999999999999998873

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.84  E-value=0.16  Score=44.70  Aligned_cols=40  Identities=25%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.+|+|.|||-|.+|-++|..+...|.+|..+.|++.
T Consensus       173 ~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          173 GKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            4567899999999999999999999999999999998875

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.83  E-value=0.16  Score=40.23  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   62 (277)
T 4fc7_A           22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLP   62 (277)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45689999999986 57999999999999999999998753

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.81  E-value=0.07  Score=42.19  Aligned_cols=41  Identities=27%  Similarity=0.381  Sum_probs=32.5

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|+..+
T Consensus        22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   63 (260)
T 3gem_A           22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHA   63 (260)
T ss_dssp             -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            34688999999985 789999999999999999999997643

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.80  E-value=0.055  Score=44.07  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          145 TVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       145 tvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +|.|+|. |.||...++.++.+|++|++.+++..+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~  186 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE  186 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            7999998 999999999999999999999987544

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.78  E-value=0.079  Score=43.68  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          144 KTVFISGF-GNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       144 ktvGIvG~-G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ++|.|.|. |.||+.+++.++..|+ +|++.+++.
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~  196 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH  196 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            99999998 9999999999999999 999999864

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.78  E-value=0.12  Score=41.28  Aligned_cols=41  Identities=24%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++.+|++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (283)
T 3v8b_A           22 SMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRT   63 (283)
T ss_dssp             -----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             hhcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            345788999999985 78999999999999999999998753

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=92.76  E-value=0.082  Score=42.10  Aligned_cols=46  Identities=17%  Similarity=0.164  Sum_probs=31.5

Q ss_pred             cCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          132 KHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       132 ~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++.......+.+|++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        17 ~~~~~~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (272)
T 4dyv_A           17 NLYFQSMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLD   63 (272)
T ss_dssp             -----------CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             eeehhhhcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            33333455688999999985 78999999999999999999998743

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.72  E-value=0.16  Score=40.89  Aligned_cols=40  Identities=30%  Similarity=0.301  Sum_probs=35.4

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ....+.||++.|.|- |.||+++|+.|..-|++|+..++..
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   62 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCK   62 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeccc
Confidence            345789999999985 6899999999999999999999874

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=92.70  E-value=0.11  Score=40.35  Aligned_cols=42  Identities=31%  Similarity=0.418  Sum_probs=36.4

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...++.+|++.|.| .|.||+++|+.|..-|++|+..+|+...
T Consensus         8 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   50 (249)
T 3f9i_A            8 HMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEK   50 (249)
T ss_dssp             -CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            45688999999998 5799999999999999999999987643

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=92.69  E-value=0.15  Score=40.60  Aligned_cols=39  Identities=23%  Similarity=0.367  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.+|++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~   64 (276)
T 2b4q_A           25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAE   64 (276)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3588999999985 89999999999999999999998753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=92.69  E-value=0.1  Score=42.51  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++.+++|.|.|. |.||+.+++.|..-|.+|++.+|...
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   62 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT   62 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            356799999997 99999999999988999999998754

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.64  E-value=0.16  Score=40.48  Aligned_cols=40  Identities=25%  Similarity=0.452  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        21 ~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~   61 (302)
T 1w6u_A           21 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   61 (302)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4468999999997 589999999999999999999998753

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=92.63  E-value=0.12  Score=40.98  Aligned_cols=40  Identities=23%  Similarity=0.363  Sum_probs=35.6

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~   65 (281)
T 3ppi_A           25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAE   65 (281)
T ss_dssp             CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChH
Confidence            45789999999986 78999999999999999999998754

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=92.59  E-value=0.16  Score=40.52  Aligned_cols=40  Identities=18%  Similarity=0.197  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   62 (277)
T 4dqx_A           22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNED   62 (277)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45788999999975 78999999999999999999998753

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=92.58  E-value=0.072  Score=43.50  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|++|.|.|. |.||+.+++.++..|++|++.+++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~  180 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE  180 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999995 9999999999999999999999875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.57  E-value=0.099  Score=43.48  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=31.1

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcC
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      -.|++|.|+| .|.||+.+++.++.+|++|++.++
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~  216 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS  216 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence            3589999999 799999999999999999998874

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=92.57  E-value=0.17  Score=41.06  Aligned_cols=40  Identities=33%  Similarity=0.360  Sum_probs=34.4

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..++...
T Consensus        41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~   81 (317)
T 3oec_A           41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQ   81 (317)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccc
Confidence            45688999999975 78999999999999999999988643

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.50  E-value=0.064  Score=43.71  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=31.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          145 TVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       145 tvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +|.|+|. |.||...++.++.+|++|++.+++...
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~  187 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA  187 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            7999998 999999999999999999999987544

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=92.47  E-value=0.17  Score=39.68  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=34.8

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.+|++.|.| .|.||+++|+.|..-|++|+..+|...
T Consensus        11 ~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~   51 (278)
T 2bgk_A           11 TNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   51 (278)
T ss_dssp             CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChh
Confidence            3467899999997 589999999999999999999988743

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=92.47  E-value=0.13  Score=45.97  Aligned_cols=60  Identities=23%  Similarity=0.319  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHHHHhcC--CCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCC
Q 044056          116 ASCAELSIYLMLGLLRKH--IVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRS  175 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~--~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~  175 (189)
                      ...|++..-+=|-+.|-.  +......|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       298 ~~la~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          298 LKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHHHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            456777755555444332  2233378999999999999999999999999998 68888765

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=92.41  E-value=0.088  Score=45.69  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHH-HHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVE-LAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~  177 (189)
                      -|+|.|||+|.+|.. +|+.|+..|.+|.++|....
T Consensus        19 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   54 (491)
T 2f00_A           19 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   54 (491)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCC
Confidence            478999999999997 99999999999999998653

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.40  E-value=0.17  Score=43.99  Aligned_cols=37  Identities=30%  Similarity=0.324  Sum_probs=33.6

Q ss_pred             CCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          143 GKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       143 gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +++|.|.| .|.||+.+++.|..-|.+|++.+|+..+.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~  184 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP  184 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc
Confidence            68999999 79999999999998899999999987654

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=92.40  E-value=0.055  Score=47.48  Aligned_cols=39  Identities=33%  Similarity=0.507  Sum_probs=29.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.||++.|+|.|.+|+++|..|...|++|+.++|+..
T Consensus       360 ~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~  398 (523)
T 2o7s_A          360 SPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE  398 (523)
T ss_dssp             ------CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHH
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            357899999999999999999999999999999998743

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.38  E-value=0.2  Score=39.88  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=34.4

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .....+.+|++.|.|- |.||+++|+.|..-|++|+..+++
T Consensus        22 ~mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   62 (280)
T 4da9_A           22 SMMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG   62 (280)
T ss_dssp             -CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hhhhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3456789999999985 789999999999999999999864

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=92.37  E-value=0.15  Score=39.84  Aligned_cols=43  Identities=16%  Similarity=0.216  Sum_probs=33.4

Q ss_pred             CCCCCCCCCEEEEEc-CCHHHHHHHHHHccCC---CEEEEEcCCCCC
Q 044056          136 PTGETLLGKTVFISG-FGNIGVELAKRLRPFG---VKIIAAKRSWAS  178 (189)
Q Consensus       136 ~~~~~l~gktvGIvG-~G~IG~~vA~~l~afG---~~V~~~~r~~~~  178 (189)
                      .....+.+|++.|.| .|.||+++|+.|...|   ++|+..+|+...
T Consensus        14 ~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~   60 (267)
T 1sny_A           14 LVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   60 (267)
T ss_dssp             ------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             ccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhh
Confidence            345678899999996 5899999999999999   999999997654

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=92.36  E-value=0.13  Score=42.23  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHcc-CC-CEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRP-FG-VKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~a-fG-~~V~~~~r~~~~  178 (189)
                      ..+++||||+|.+|+..++.+.. ++ -+|..|||++..
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~  162 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKA  162 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHH
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHH
Confidence            56899999999999999998875 44 479999998543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=92.35  E-value=0.094  Score=41.92  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   68 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPD   68 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35688999999985 78999999999999999999998754

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=92.33  E-value=0.096  Score=43.24  Aligned_cols=37  Identities=14%  Similarity=0.116  Sum_probs=32.6

Q ss_pred             CC-CEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LG-KTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~g-ktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .| .+|.|+|. |.||...++.++.+|++|++..++.++
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~  204 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN  204 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            47 99999998 999999999999999999988765543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=92.31  E-value=0.17  Score=40.04  Aligned_cols=39  Identities=23%  Similarity=0.427  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   56 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   56 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357899999998 489999999999999999999998753

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=92.29  E-value=0.14  Score=40.55  Aligned_cols=40  Identities=28%  Similarity=0.409  Sum_probs=32.7

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.+|++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        11 ~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   51 (266)
T 3p19_A           11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE   51 (266)
T ss_dssp             ----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34578999999986 78999999999999999999998753

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=92.25  E-value=0.13  Score=42.29  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .|++|.|+| .|.||..+++.++.+|++|++. ++
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~  183 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-AR  183 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-EC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eC
Confidence            589999999 8999999999999999999988 44

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.25  E-value=0.28  Score=38.83  Aligned_cols=39  Identities=33%  Similarity=0.412  Sum_probs=34.0

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|..
T Consensus        10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~   49 (280)
T 3pgx_A           10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICA   49 (280)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccc
Confidence            35689999999985 7899999999999999999999853

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.24  E-value=0.22  Score=39.51  Aligned_cols=39  Identities=26%  Similarity=0.193  Sum_probs=34.3

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        39 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   78 (285)
T 2c07_A           39 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   78 (285)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            4567899999996 58999999999999999999998764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.22  E-value=0.089  Score=41.55  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+...
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~   70 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPA   70 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            47899999997 6799999999999899999999987654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.22  E-value=0.12  Score=42.41  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccC-CCEEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPF-GVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~~  178 (189)
                      -.|.+|.|+|.|.+|...++.++.+ |.+|++.+++..+
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~  208 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDR  208 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            3489999999999999999999988 7899999887543

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=92.21  E-value=0.099  Score=37.03  Aligned_cols=44  Identities=20%  Similarity=0.192  Sum_probs=39.0

Q ss_pred             CEEEEEcC----CHHHHHHHHHHccCCCEEEEEcCCCCCcccccccCC
Q 044056          144 KTVFISGF----GNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS  187 (189)
Q Consensus       144 ktvGIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~  187 (189)
                      ++|.|||.    ++.|..+.+.|+.+|++|+-+++...+..+..|+.|
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~s   52 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINE   52 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCS
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCC
Confidence            78999998    579999999999999999999999888888877765

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=92.20  E-value=0.1  Score=44.52  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      --.|++|.|.|. |.||..+++.++..|++|++.+++.
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~  255 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA  255 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            346899999998 9999999999999999999988754

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=92.14  E-value=0.064  Score=45.11  Aligned_cols=35  Identities=14%  Similarity=0.045  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      --++-|+|.|.+++++++.++.+|++|..+|+++.
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~  233 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPN  233 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcc
Confidence            35799999999999999999999999999998754

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=92.14  E-value=0.15  Score=42.18  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHc-c-CCCEEE-EEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLR-P-FGVKII-AAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~-a-fG~~V~-~~~r~~~~  178 (189)
                      -.+|||||+|.||+..++.+. . -++++. .+|+.+..
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~   61 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGR   61 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHH
Confidence            358999999999999999887 5 478876 58887654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=92.14  E-value=0.12  Score=43.09  Aligned_cols=40  Identities=25%  Similarity=0.372  Sum_probs=34.8

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ....|.+++|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus        30 ~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           30 AQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             HHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            3457889999999999999999999998888 788998654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.12  E-value=0.13  Score=45.27  Aligned_cols=36  Identities=31%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +.+.|+|+|++|+.+|+.|...|.+|...|..+...
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~  384 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPV  384 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHH
Confidence            789999999999999999999999999999877653

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=92.03  E-value=0.13  Score=40.58  Aligned_cols=40  Identities=25%  Similarity=0.438  Sum_probs=35.1

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   55 (266)
T 4egf_A           15 VLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVS   55 (266)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            34689999999985 78999999999999999999998753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.02  E-value=0.081  Score=42.90  Aligned_cols=35  Identities=23%  Similarity=0.450  Sum_probs=31.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |+ |.|.|. |.||...++.++.+|++|++.+++..+
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~  183 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGREST  183 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            45 999998 999999999999999999999987544

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=92.01  E-value=0.28  Score=40.48  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...+++|.|.|. |.||+.+++.|..-|.+|++.+|...+
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   65 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   65 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            346789999997 999999999999889999999997654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=92.01  E-value=0.11  Score=41.40  Aligned_cols=39  Identities=28%  Similarity=0.456  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   64 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGD   64 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999997 568999999999999999999998743

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=91.98  E-value=0.15  Score=39.87  Aligned_cols=39  Identities=23%  Similarity=0.447  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   49 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQE   49 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457899999997 589999999999999999999998754

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=91.97  E-value=0.24  Score=42.99  Aligned_cols=67  Identities=15%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             CCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056          100 CAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAKRSW  176 (189)
Q Consensus       100 ~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~r~~  176 (189)
                      ..|++.|.- .     +-+|=-+++.+|+.+|-    .+..|.+.+|.+.|.|.-|-.+|+.+...|+   +|+.+|+.+
T Consensus       186 ~~ipvFnDD-~-----qGTA~V~lAgllnAlki----~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~G  255 (487)
T 3nv9_A          186 CDIPVWHDD-Q-----QGTASVTLAGLLNALKL----VKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKG  255 (487)
T ss_dssp             CSSCEEETT-T-----HHHHHHHHHHHHHHHHH----HTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTE
T ss_pred             ccCCccccc-c-----chHHHHHHHHHHHHHHH----hCCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccc
Confidence            379999963 2     66888999999999985    6889999999999999999999999999999   799999864

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=91.97  E-value=0.2  Score=39.78  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=33.8

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|.
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            35789999999985 689999999999999999999865

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=91.94  E-value=0.11  Score=43.30  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=34.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ...|++++|.|+|+|.+|.++|+.|...|. ++..+|+..
T Consensus       113 q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            456889999999999999999999998887 688888754

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=91.94  E-value=0.12  Score=42.24  Aligned_cols=40  Identities=23%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCC-CEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFG-VKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG-~~V~~~~r~~~~  178 (189)
                      ..+.+++|.|.|. |.||+.+++.|..-| .+|++.+|....
T Consensus        42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   83 (357)
T 2x6t_A           42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG   83 (357)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSG
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCc
Confidence            3467899999997 999999999999889 999999987654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=91.93  E-value=0.17  Score=40.11  Aligned_cols=41  Identities=20%  Similarity=0.279  Sum_probs=35.6

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   62 (266)
T 3grp_A           21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRED   62 (266)
T ss_dssp             CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            345789999999985 78999999999999999999998754

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=91.90  E-value=0.14  Score=40.37  Aligned_cols=40  Identities=38%  Similarity=0.546  Sum_probs=34.7

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...++.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (271)
T 4iin_A           23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN   63 (271)
T ss_dssp             -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            345788999999985 7999999999999999999999854

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=91.89  E-value=0.082  Score=45.65  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHH-HHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVE-LAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~  177 (189)
                      -++|.|||+|.+|.. +|+.|+..|.+|.++|....
T Consensus        18 ~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~   53 (475)
T 1p3d_A           18 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   53 (475)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             CCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            478999999999997 99999999999999998653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=91.87  E-value=0.2  Score=39.72  Aligned_cols=38  Identities=26%  Similarity=0.472  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   57 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE   57 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            58899999997 579999999999999999999998753

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=91.86  E-value=0.21  Score=39.83  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=33.5

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..++.+|++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~   59 (281)
T 3v2h_A           20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGA   59 (281)
T ss_dssp             --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            45788999999985 7899999999999999999999843

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=91.85  E-value=0.12  Score=40.95  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=35.1

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~   61 (271)
T 4ibo_A           21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPS   61 (271)
T ss_dssp             GGCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35789999999985 78999999999999999999998653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=91.80  E-value=0.13  Score=41.74  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcC
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      -.|.+|.|+| .|.||...++.++.+|++|++..+
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~  185 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS  185 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec
Confidence            3589999997 999999999999999999998864

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=91.79  E-value=0.15  Score=40.41  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.+|++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (270)
T 3ftp_A           23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEA   63 (270)
T ss_dssp             CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35689999999975 78999999999999999999998753

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=91.78  E-value=0.23  Score=43.63  Aligned_cols=39  Identities=21%  Similarity=0.228  Sum_probs=36.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.+|+|+|||-|.+|-++|..+...+.+|..+.|++.
T Consensus       181 ~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          181 VDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            567899999999999999999999999999999998875

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=91.67  E-value=0.1  Score=42.67  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.+.|+|+|++|+.+|+.|...|. |...|+.+..
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~  149 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVR  149 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhh
Confidence            5689999999999999999999999 9999987654

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=91.64  E-value=0.13  Score=44.13  Aligned_cols=36  Identities=25%  Similarity=0.198  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -.|++|.|+|. |.||...++.++++|++|++.+++.
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~  263 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSP  263 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCH
Confidence            45899999998 9999999999999999999988654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=91.60  E-value=0.25  Score=39.38  Aligned_cols=40  Identities=25%  Similarity=0.449  Sum_probs=35.1

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ....+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        12 ~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   52 (303)
T 1yxm_A           12 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   52 (303)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34578899999997 58999999999999999999999874

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=91.57  E-value=0.17  Score=41.57  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHcc-CCC-EEEEEcCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRP-FGV-KIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~a-fG~-~V~~~~r~  175 (189)
                      ..++++|||.|.+|+..++.+.. ++. +|..|||+
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~  155 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY  155 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc
Confidence            46899999999999999998874 554 79999999

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=91.57  E-value=0.14  Score=41.43  Aligned_cols=39  Identities=26%  Similarity=0.245  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCC-------CEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFG-------VKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG-------~~V~~~~r~~~  177 (189)
                      ..+.+++|.|.| .|.||+.+++.|..-|       .+|++.+|...
T Consensus        10 ~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~   56 (342)
T 2hrz_A           10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQP   56 (342)
T ss_dssp             SCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCC
T ss_pred             CCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCC
Confidence            357789999999 7999999999999889       89999998754

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=91.43  E-value=0.09  Score=40.93  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHH--ccCCCEEE-EEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRL--RPFGVKII-AAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l--~afG~~V~-~~~r~~~  177 (189)
                      .++++|+|.|++|+++++.+  +..|+++. ++|..+.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~  121 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSN  121 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCch
Confidence            46899999999999999983  46789865 5676655

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=91.33  E-value=0.2  Score=43.84  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCCHHHHH-HHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVE-LAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++|-+||.|.+|.. +|+.|+..|++|.++|....
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~   54 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY   54 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC
Confidence            45799999999999996 79999999999999998643

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.29  E-value=0.3  Score=39.12  Aligned_cols=39  Identities=15%  Similarity=0.136  Sum_probs=34.5

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..++..
T Consensus        44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~   83 (294)
T 3r3s_A           44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPA   83 (294)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            35689999999985 7899999999999999999998863

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=91.27  E-value=0.14  Score=42.35  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCHHHH-HHHHHHccC-CCEEE-EEcCCC
Q 044056          143 GKTVFISGFGNIGV-ELAKRLRPF-GVKII-AAKRSW  176 (189)
Q Consensus       143 gktvGIvG~G~IG~-~vA~~l~af-G~~V~-~~~r~~  176 (189)
                      -.+|||||+|.||+ ..++.++.. +++|. .+|+.+
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~   63 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRW   63 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSH
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCH
Confidence            36899999999999 788888766 78876 667764

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=91.24  E-value=0.24  Score=40.76  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++|.|.|. |.||+.+++.|..-|.+|++.+|....
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCcc
Confidence            78999996 999999999999899999999987643

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=91.15  E-value=0.28  Score=38.88  Aligned_cols=38  Identities=34%  Similarity=0.427  Sum_probs=33.2

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..++..
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   65 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA   65 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999999985 6899999999999999999886543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=91.11  E-value=0.28  Score=40.71  Aligned_cols=37  Identities=24%  Similarity=0.239  Sum_probs=28.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +-+.++|+|+|.|.+|+.+|+.|.. ..+|..+|++.+
T Consensus        13 ~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~   49 (365)
T 3abi_A           13 EGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNE   49 (365)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHH
T ss_pred             cCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHH
Confidence            3445689999999999999999976 468888887654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=91.11  E-value=0.17  Score=44.58  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=36.8

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++.+|+|.|||-|.+|-++|..+...+.+|..+.|++.
T Consensus       186 ~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          186 GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            5677899999999999999999999999999999998875

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=91.10  E-value=0.2  Score=40.56  Aligned_cols=37  Identities=19%  Similarity=0.145  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCC--CEEEEEcCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFG--VKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG--~~V~~~~r~~  176 (189)
                      ...+++|.|.|. |.||+.+++.|..-|  .+|++.++..
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~   60 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT   60 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence            467899999997 999999999998777  8999998875

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=91.05  E-value=0.11  Score=42.74  Aligned_cols=36  Identities=14%  Similarity=0.132  Sum_probs=31.7

Q ss_pred             CCEEEEE-cCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFIS-GFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIv-G~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +++|.|. |.|.||...++.++.+|++|++.+++..+
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~  201 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQ  201 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4788776 99999999999999999999999987554

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=91.04  E-value=0.19  Score=35.47  Aligned_cols=31  Identities=39%  Similarity=0.449  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHcc-CCCEEEEE
Q 044056          142 LGKTVFISGFGNIGVELAKRLRP-FGVKIIAA  172 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~a-fG~~V~~~  172 (189)
                      ..+++.|+|.|..|+.+++.++. -|++|.++
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~   34 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAF   34 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence            35789999999999999999974 38998776

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=91.03  E-value=0.1  Score=43.58  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             CCCCEEEEE--cCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFIS--GFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIv--G~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.|.+|.|+  |.|.+|...++.++.+|++|++.+++..
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~  207 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQE  207 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            458899999  8999999999999999999999987643

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=90.97  E-value=0.21  Score=40.91  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=27.1

Q ss_pred             CCEEEEEcCCHHHH-HHHHHHccC-CCEEE-EEcCCCC
Q 044056          143 GKTVFISGFGNIGV-ELAKRLRPF-GVKII-AAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~-~vA~~l~af-G~~V~-~~~r~~~  177 (189)
                      -.+|||||+|.||+ ..++.++.. +++|. .+|+...
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~   62 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT   62 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh
Confidence            35899999999999 688888765 78865 4666654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=90.97  E-value=0.24  Score=39.39  Aligned_cols=40  Identities=23%  Similarity=0.423  Sum_probs=30.9

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..-+.+|++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   59 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAK   59 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            34567999999985 78999999999999999999998754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.90  E-value=0.55  Score=41.19  Aligned_cols=39  Identities=13%  Similarity=0.187  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.....+.|+|+|+.|+.+|+.|...|.+|+..|..+..
T Consensus       124 ~~~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~  162 (565)
T 4gx0_A          124 DDTRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQ  162 (565)
T ss_dssp             TTCCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHH
T ss_pred             cccCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            455678999999999999999999999999999987543

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=90.90  E-value=0.19  Score=39.26  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ..+.+|++.|.| .|.||+++++.|..-|++|+..+|.
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~   54 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   54 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            468899999997 5899999999999999999999883

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=90.89  E-value=0.28  Score=39.40  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .-.+++|.|.|- |.||+.+++.|..-|.+|++.+|...+
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   50 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS   50 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            345789999975 999999999999889999999997654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=90.84  E-value=0.14  Score=44.05  Aligned_cols=54  Identities=20%  Similarity=0.303  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC---EEEEEc----CC
Q 044056          118 CAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV---KIIAAK----RS  175 (189)
Q Consensus       118 vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~---~V~~~~----r~  175 (189)
                      ++-...+.++...|.    .+..+.++++.|+|.|..|+++++.|...|+   +|+.+|    |+
T Consensus       165 tgntd~aG~~~AL~~----~g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~  225 (439)
T 2dvm_A          165 TAAVVLAGLLNALKV----VGKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKP  225 (439)
T ss_dssp             HHHHHHHHHHHHHHH----HTCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEE
T ss_pred             EeehHHHHHHHHHHH----hCCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCc
Confidence            344445555555553    3567889999999999999999999999998   799999    76

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=90.83  E-value=0.23  Score=40.32  Aligned_cols=39  Identities=21%  Similarity=0.366  Sum_probs=34.2

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ....+.||++.|.|- |.||+++|+.|..-|++|+..+|.
T Consensus        21 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           21 SMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            345789999999985 789999999999999999999886

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=90.81  E-value=0.21  Score=39.00  Aligned_cols=39  Identities=28%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~   49 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   49 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457899999996 589999999999999999999998754

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=90.80  E-value=0.17  Score=41.69  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .|.+|.|+|. |.||...++.++.+|++|++..++
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~  201 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRD  201 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecC
Confidence            5899999998 999999999999999998877654

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.71  E-value=0.26  Score=45.26  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++|||||.|.+|..+|..+..-|++|+.+|++..
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            7999999999999999999999999999998753

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=90.69  E-value=0.22  Score=39.38  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+++
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~   61 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS   61 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4688999999985 789999999999999999988774

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=90.66  E-value=0.16  Score=40.43  Aligned_cols=40  Identities=18%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        17 ~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~   57 (288)
T 2x9g_A           17 RGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNS   57 (288)
T ss_dssp             -----CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            34568899999987 57999999999999999999999875

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.61  E-value=0.3  Score=38.48  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      ....+.||++.|.|- |.||+++|+.|..-|++|+..+++
T Consensus        12 ~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~   51 (270)
T 3is3_A           12 IPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN   51 (270)
T ss_dssp             CTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            345789999999985 589999999999999999987654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=90.56  E-value=0.41  Score=38.29  Aligned_cols=37  Identities=27%  Similarity=0.324  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++|.|+|-|.+|-++|..|..+|.+|..+.+...
T Consensus       157 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  193 (333)
T 1vdc_A          157 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA  193 (333)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCc
Confidence            4689999999999999999999999999999988754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.52  E-value=0.25  Score=40.91  Aligned_cols=36  Identities=31%  Similarity=0.310  Sum_probs=32.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++++.|||-|.+|-++|..+..+|.+|..+.+....
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            589999999999999999999999999999887543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=90.44  E-value=0.27  Score=40.80  Aligned_cols=33  Identities=21%  Similarity=0.019  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEc
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      -.|++|.|+|. |.||...++.++.+|++|++..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~  196 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC  196 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            57899999999 8999999999999999999875

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=90.29  E-value=0.33  Score=39.80  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             CEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++|.|.| .|.||+.+++.|..-|.+|++.+|....
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   60 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSS   60 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccc
Confidence            6899999 6999999999999899999999987543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=90.25  E-value=0.33  Score=39.43  Aligned_cols=39  Identities=15%  Similarity=0.132  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.+++|.|||-|.+|-++|..|..+|.+|..+.+...
T Consensus       162 ~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~  200 (369)
T 3d1c_A          162 DNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG  200 (369)
T ss_dssp             GGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             hhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence            345789999999999999999999999999999988653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=90.23  E-value=0.26  Score=39.11  Aligned_cols=39  Identities=31%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   64 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   64 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            457899998887 679999999999999999999988753

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=90.11  E-value=0.28  Score=40.66  Aligned_cols=36  Identities=8%  Similarity=0.016  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~  177 (189)
                      ..++|+|+|.|.+|..+|..+..-|+  +|..+|....
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~   57 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMED   57 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHH
Confidence            56899999999999999999987776  8999998543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=90.10  E-value=0.45  Score=38.10  Aligned_cols=39  Identities=28%  Similarity=0.297  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.+++|.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       148 ~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          148 AEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             GGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             hhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            345789999999999999999999999999999988754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=90.09  E-value=0.36  Score=39.33  Aligned_cols=37  Identities=27%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~  177 (189)
                      -.|.+|.|+|.|.+|...++.++ ..|.+|++.+++..
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~  199 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQD  199 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHH
Confidence            35899999999999999999998 66899999998754

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=90.01  E-value=0.32  Score=40.53  Aligned_cols=36  Identities=17%  Similarity=0.118  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHc-cCC-CEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLR-PFG-VKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~  177 (189)
                      ..+++||||+|.+|+..++.+. .++ -+|..|||+..
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~  165 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPL  165 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHH
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            5789999999999999988764 455 47999999854

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=90.00  E-value=0.39  Score=40.26  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++|.|||-|.||-++|..++.+|.+|..+.+....
T Consensus       144 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          144 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL  180 (408)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            3799999999999999999999999999999887654

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=89.96  E-value=0.34  Score=40.94  Aligned_cols=36  Identities=25%  Similarity=0.488  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++|+|+|-|.+|+.+++.++..|.+|+.++..+.
T Consensus        18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~   53 (433)
T 2dwc_A           18 SAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYAN   53 (433)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            357999999999999999999999999999987653

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=89.96  E-value=0.34  Score=41.65  Aligned_cols=42  Identities=24%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccC---CCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPF---GVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~af---G~~V~~~~r~~~~  178 (189)
                      ......+++|.|.| .|.||+++++.|...   |.+|++.+|+...
T Consensus        67 ~~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~  112 (478)
T 4dqv_A           67 PGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESD  112 (478)
T ss_dssp             CCCCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSH
T ss_pred             CCCCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            34567899999999 599999999999877   8999999998653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=89.93  E-value=0.52  Score=37.94  Aligned_cols=37  Identities=19%  Similarity=0.217  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++|.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       153 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          153 FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             GTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            4589999999999999999999999999999987653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.63  E-value=0.32  Score=41.92  Aligned_cols=40  Identities=25%  Similarity=0.270  Sum_probs=36.2

Q ss_pred             CCCCCCCEEEEEcCC----------HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFG----------NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +..+.|++|+|+|+-          .-...+++.|...|++|.+|||...
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~  366 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV  366 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC
Confidence            557899999999997          6789999999999999999999874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=89.56  E-value=0.45  Score=40.28  Aligned_cols=38  Identities=21%  Similarity=0.348  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  176 (189)
                      ....+|+|.|||-|.+|-++|..|..+|.+ |....|..
T Consensus       208 ~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          208 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             hhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            345799999999999999999999999999 98888764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=89.51  E-value=0.28  Score=40.65  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHcc-CCCEEEEEcCCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRP-FGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~a-fG~~V~~~~r~~~  177 (189)
                      .|++|.|+| .|.||...++.++. .|.+|++.+++..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~  208 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPE  208 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            689999999 99999999999998 5999999998653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=89.50  E-value=0.51  Score=37.33  Aligned_cols=37  Identities=27%  Similarity=0.183  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++|.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       141 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          141 YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            3579999999999999999999999999999987653

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=89.42  E-value=0.36  Score=37.93  Aligned_cols=39  Identities=21%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...+.+|++.|.|- |.||+++|+.|..-|++|+..++..
T Consensus        20 ~~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~   59 (269)
T 3gk3_A           20 GSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSER   59 (269)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSC
T ss_pred             hhhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCc
Confidence            44578999999985 8899999999999999999988543

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=89.42  E-value=0.23  Score=42.74  Aligned_cols=37  Identities=30%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      .|++++|.|||+|.+|.++|+.|...|. ++..+|...
T Consensus        37 ~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~   74 (434)
T 1tt5_B           37 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   74 (434)
T ss_dssp             HHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred             HhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            3468999999999999999999998888 588887643

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=89.40  E-value=0.42  Score=39.91  Aligned_cols=33  Identities=15%  Similarity=0.219  Sum_probs=27.3

Q ss_pred             CCEEEEEc-CCHHHHHHHHHHccCC-CEEEEEcCC
Q 044056          143 GKTVFISG-FGNIGVELAKRLRPFG-VKIIAAKRS  175 (189)
Q Consensus       143 gktvGIvG-~G~IG~~vA~~l~afG-~~V~~~~r~  175 (189)
                      ..+|||+| +|.||+.+++.|.... +++.+....
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~   50 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTAD   50 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCS
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            46899999 9999999999997655 587777654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=89.35  E-value=0.62  Score=37.21  Aligned_cols=37  Identities=27%  Similarity=0.307  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++|.|||-|.+|-++|..+..+|.+|..+.+...
T Consensus       150 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          150 YKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT  186 (325)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence            4579999999999999999999999999999987653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=89.33  E-value=0.61  Score=36.99  Aligned_cols=37  Identities=24%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++|.|||-|.+|-++|..|..+|.+|..+.+...
T Consensus       143 ~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  179 (320)
T 1trb_A          143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  179 (320)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            3579999999999999999999999999999988654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.31  E-value=0.32  Score=39.05  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~   61 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   61 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999986 579999999999999999999998753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=89.23  E-value=0.35  Score=39.42  Aligned_cols=37  Identities=30%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~  177 (189)
                      ..|++|.|.|.|.+|...++.++++|++ |++.+++.+
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~  196 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSE  196 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHH
Confidence            3589999999999999999999999987 467777654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=89.23  E-value=0.56  Score=38.10  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.+++|.|||-|.+|-++|..|..+|.+|..+.+...
T Consensus       159 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  197 (360)
T 3ab1_A          159 EDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE  197 (360)
T ss_dssp             GGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             HHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC
Confidence            345789999999999999999999999999999988654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=89.20  E-value=0.5  Score=37.38  Aligned_cols=37  Identities=30%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++|.|||-|.+|-++|..|..+|.+|..+.+.+.
T Consensus       142 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          142 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence            3579999999999999999999999999999987754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=89.18  E-value=0.48  Score=40.43  Aligned_cols=37  Identities=24%  Similarity=0.254  Sum_probs=33.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ++++.|||-|.||-++|..+..+|.+|..+.+.....
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  219 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG  219 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccc
Confidence            6999999999999999999999999999999876543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.12  E-value=0.56  Score=40.48  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=33.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI  211 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            789999999999999999999999999999886543

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=88.98  E-value=0.43  Score=40.06  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=35.6

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ......+++|.|.| .|.||+++++.|..-|.+|++.+|+..
T Consensus        63 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           63 SLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             SSCCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             cCCCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            34456788999999 599999999999999999999999865

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=88.96  E-value=0.5  Score=40.62  Aligned_cols=37  Identities=30%  Similarity=0.311  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++|.|||-|.||-++|..++.+|.+|..+.+....
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC  229 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch
Confidence            4799999999999999999999999999999876543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=88.96  E-value=0.58  Score=39.60  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.+|-++|..+..+|.+|..+.+....
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV  183 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            5799999999999999999999999999998876543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=88.95  E-value=0.32  Score=41.70  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+|+|.|||-|.+|-.+|..+..+|.+|....+...
T Consensus       194 ~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          194 EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            45789999999999999999999999999998887654

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=88.86  E-value=1.4  Score=36.54  Aligned_cols=71  Identities=14%  Similarity=0.059  Sum_probs=52.7

Q ss_pred             HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEEcC
Q 044056           97 LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        97 ~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      +.-.+|+|.|.-+.   +..++-  +++=++.+.++    .+..+.|++|+++|=|  ++....+..+.-|||+|....|
T Consensus       118 A~~s~vPVINa~~~---~~HPtQ--~LaDl~Ti~e~----~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P  188 (335)
T 1dxh_A          118 AKFAGVPVFNGLTD---EYHPTQ--MLADVLTMREH----SDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAP  188 (335)
T ss_dssp             HHHSSSCEEEEECS---SCCHHH--HHHHHHHHHHT----CSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHhCCCCEEcCCCC---CCCcHH--HHHHHHHHHHH----cCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECC
Confidence            34567999997654   445543  33344444454    2336899999999996  9999999999999999999988


Q ss_pred             CC
Q 044056          175 SW  176 (189)
Q Consensus       175 ~~  176 (189)
                      ..
T Consensus       189 ~~  190 (335)
T 1dxh_A          189 KA  190 (335)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=88.84  E-value=0.33  Score=42.37  Aligned_cols=39  Identities=15%  Similarity=0.301  Sum_probs=35.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++.+|+|+|||.|.+|-++|..+...|.+|..+.|++.
T Consensus       182 ~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          182 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             hccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            467899999999999999999999999999999988754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=88.84  E-value=0.55  Score=38.81  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=32.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++++.|+|-|.+|-++|..+..+|.+|..+.+....
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV  180 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcch
Confidence            699999999999999999999999999999886543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=88.73  E-value=0.7  Score=36.73  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++++.|||-|.+|.++|..+..+|.+|..+.+...
T Consensus       170 ~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~  207 (338)
T 3itj_A          170 IFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH  207 (338)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            45789999999999999999999999999999988754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=88.73  E-value=0.71  Score=38.27  Aligned_cols=37  Identities=32%  Similarity=0.432  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .....|.|||-|-.|..+|..|+..|.+|..+++...
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3457899999999999999999999999999998754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=88.65  E-value=0.52  Score=39.13  Aligned_cols=41  Identities=15%  Similarity=-0.024  Sum_probs=33.0

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ........|.|||.|-.|..+|..|...|.+|..+++....
T Consensus        18 ~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           18 LYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI   58 (407)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            34455678999999999999999999999999999987543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=88.56  E-value=0.54  Score=39.41  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.+|-++|..+..+|.+|..+.+.+..
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            4799999999999999999999999999999887654

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=88.38  E-value=0.25  Score=44.56  Aligned_cols=38  Identities=34%  Similarity=0.420  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ..|++++|.|||+|.+|.++|+.|...|. ++..+|...
T Consensus        13 ~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~   51 (640)
T 1y8q_B           13 EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT   51 (640)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            45778999999999999999999997777 688888654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=88.34  E-value=0.64  Score=39.30  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++++.|||-|.+|-++|..++.+|.+|..+++...
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  183 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR  183 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcc
Confidence            478999999999999999999999999999988654

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=88.33  E-value=0.3  Score=43.05  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ...|.+.+|.|||+|.+|.++|+.|...|. ++..+|...
T Consensus        27 q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~   66 (531)
T 1tt5_A           27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   66 (531)
T ss_dssp             HHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCB
T ss_pred             HHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            456788999999999999999999998898 688888653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=88.30  E-value=0.56  Score=40.39  Aligned_cols=36  Identities=36%  Similarity=0.432  Sum_probs=33.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +++|.|||-|.||-++|..+..+|.+|..+.+...-
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            799999999999999999999999999999887643

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=88.30  E-value=3.4  Score=33.76  Aligned_cols=70  Identities=17%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             hhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEEcCC
Q 044056           98 TNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus        98 ~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .-.+++|.|.-+.   +..++--++  =++.+.+++     ..+.|++|+++|=|  ++.+..+..+.-|||+|....|.
T Consensus       113 ~~~~vPVINa~~~---~~HPtQaLa--Dl~Ti~e~~-----g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~  182 (307)
T 2i6u_A          113 SVATVPVINALSD---EFHPCQVLA--DLQTIAERK-----GALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPE  182 (307)
T ss_dssp             HHCSSCEEESCCS---SCCHHHHHH--HHHHHHHHH-----SCCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCT
T ss_pred             hhCCCCEEcCCCC---CcCccHHHH--HHHHHHHHh-----CCcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCc
Confidence            3457999997654   445554333  333333431     25889999999986  99999999999999999999986


Q ss_pred             CC
Q 044056          176 WA  177 (189)
Q Consensus       176 ~~  177 (189)
                      .-
T Consensus       183 ~~  184 (307)
T 2i6u_A          183 GF  184 (307)
T ss_dssp             TS
T ss_pred             cc
Confidence            44

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=88.28  E-value=0.6  Score=39.70  Aligned_cols=37  Identities=30%  Similarity=0.503  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  206 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRA  206 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            3689999999999999999999999999999887543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=88.27  E-value=0.26  Score=43.46  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      +++.|||-|.||-++|..+..||.+|....+.
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~  255 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRS  255 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEeccc
Confidence            67999999999999999999999999887654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=88.24  E-value=0.62  Score=39.57  Aligned_cols=35  Identities=31%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  201 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA  201 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence            68999999999999999999999999999988754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=88.16  E-value=0.66  Score=39.27  Aligned_cols=36  Identities=28%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV  184 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCch
Confidence            689999999999999999999999999999876543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=88.11  E-value=0.58  Score=38.70  Aligned_cols=39  Identities=13%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~  177 (189)
                      .....++|+|+|.|.+|..+|..+..-|.  ++..+|....
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~   55 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIED   55 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChH
Confidence            34567899999999999999988865565  8999998643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=88.09  E-value=0.64  Score=39.66  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++.|||-|.||-++|..++.+|.+|..+.+....
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI  204 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            589999999999999999999999999999887543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=87.93  E-value=0.63  Score=39.43  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +++|.|||-|.+|-++|..+..+|.+|..+.+....
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI  205 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            689999999999999999999999999999886543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=87.86  E-value=0.51  Score=40.20  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .+++|.|||-|.+|-++|..|+.+|.+|..+.+.....
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  207 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL  207 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc
Confidence            36899999999999999999999999999998876543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=87.80  E-value=0.85  Score=36.15  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=35.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...+.++++.|+|-|.+|.++|..+..+|.+|..+.+...
T Consensus       149 ~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          149 LQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             GGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             HHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            3456789999999999999999999999999999987654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=87.78  E-value=0.67  Score=39.50  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV  213 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence            589999999999999999999999999999887543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=87.76  E-value=0.69  Score=39.62  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+++.|||-|.||-++|..+..+|.+|..+.+.+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGET  219 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc
Confidence            368999999999999999999999999999988754

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=87.70  E-value=0.7  Score=39.44  Aligned_cols=35  Identities=40%  Similarity=0.496  Sum_probs=32.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..++.+|.+|..+.+...
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDR  200 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            58999999999999999999999999999988754

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=87.69  E-value=0.48  Score=38.94  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=25.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccC--------CCEEE-EEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPF--------GVKII-AAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~af--------G~~V~-~~~r~~~~  178 (189)
                      --+|||||+|.||+.-++.++++        +++|. .+|+++..
T Consensus        25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~   69 (393)
T 4fb5_A           25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGL   69 (393)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TT
T ss_pred             CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHH
Confidence            35899999999999877766553        56765 45776544

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=87.60  E-value=0.74  Score=38.90  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++|.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV  184 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            3799999999999999999999999999999876544

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=87.56  E-value=0.55  Score=40.22  Aligned_cols=36  Identities=19%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++++.|||-|.||-++|..++.+|.+|..+.+....
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL  220 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            799999999999999999999999999999887543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=87.55  E-value=0.72  Score=39.08  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=32.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +++|.|||-|.+|-++|..++.+|.+|..+.+....
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            589999999999999999999999999999876543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=87.44  E-value=1.7  Score=37.76  Aligned_cols=60  Identities=12%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC----------HHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG----------NIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +.+.++++-.+...+.+    .+..+.|++|+|+|+-          .=...+++.|...|++|.+|||.....
T Consensus       330 ~~~~~~~~~~i~~~l~~----~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~  399 (478)
T 3g79_A          330 DFMPAHMYNLTVAALER----LGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY  399 (478)
T ss_dssp             HHHHHHHHHHHHHHHHT----TTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB
T ss_pred             HHHHHHHHHHHHHHHhh----cccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc
Confidence            34555555555554432    3567899999999984          346899999999999999999987643

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=87.33  E-value=0.49  Score=40.30  Aligned_cols=33  Identities=12%  Similarity=0.126  Sum_probs=26.7

Q ss_pred             CEEEEEcCCHHHH-HHHHHHccC-CCEE-EEEcCCC
Q 044056          144 KTVFISGFGNIGV-ELAKRLRPF-GVKI-IAAKRSW  176 (189)
Q Consensus       144 ktvGIvG~G~IG~-~vA~~l~af-G~~V-~~~~r~~  176 (189)
                      .+|||||+|.||+ ..++.+... ++++ ..+|++.
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~  119 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNA  119 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCH
Confidence            5899999999997 899988765 6775 4677764

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=87.29  E-value=0.48  Score=38.67  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEc-CCC
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAK-RSW  176 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~-r~~  176 (189)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+ |+.
T Consensus        43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~   81 (328)
T 2qhx_A           43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   81 (328)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            47899999987 57999999999999999999998 754

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=87.23  E-value=0.48  Score=38.74  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=25.1

Q ss_pred             CEEEEEcCCHHHHH-HHHHHccC-CCEEE-EEcCCCC
Q 044056          144 KTVFISGFGNIGVE-LAKRLRPF-GVKII-AAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~-vA~~l~af-G~~V~-~~~r~~~  177 (189)
                      .++||||+|.||+. .+..++.. +++|. .+|+++.
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~   60 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLT   60 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHH
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHH
Confidence            38999999999986 56666644 78876 4677643

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=87.20  E-value=0.52  Score=36.89  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=28.5

Q ss_pred             CCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEc
Q 044056          137 TGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       137 ~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ....+.+|++.|.|- |.||+++|+.|..-|++|+...
T Consensus        20 ~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~   57 (267)
T 4iiu_A           20 FQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHY   57 (267)
T ss_dssp             -----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            345788999999976 7899999999999999996644

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=87.17  E-value=0.76  Score=39.08  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  209 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRC  209 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcc
Confidence            3689999999999999999999999999999887543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=87.13  E-value=0.57  Score=36.92  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=29.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+++
T Consensus        24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   60 (267)
T 3u5t_A           24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAG   60 (267)
T ss_dssp             ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999975 799999999999999999887443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=87.08  E-value=0.36  Score=40.35  Aligned_cols=38  Identities=24%  Similarity=0.190  Sum_probs=33.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      +++|.|||-|.+|-++|..|..+|.+|..+.+.+...+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~  183 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLE  183 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence            68999999999999999999999999999988765433

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=86.90  E-value=0.71  Score=39.39  Aligned_cols=35  Identities=31%  Similarity=0.281  Sum_probs=32.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ++++.|||-|.||-++|..+..+|.+|..+.+...
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK  221 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence            68999999999999999999999999999987654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=86.85  E-value=1.3  Score=35.23  Aligned_cols=38  Identities=18%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .....+++|.|||-|.+|-++|..+..+| +|..+.+..
T Consensus       158 ~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          158 PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            44567899999999999999999999998 788887663

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=86.82  E-value=0.49  Score=39.98  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.|.|||-|-.|..+|..|...|.+|..+++..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=86.66  E-value=0.86  Score=39.56  Aligned_cols=38  Identities=21%  Similarity=0.181  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       212 ~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          212 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL  249 (523)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            34699999999999999999999999999999887643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=86.66  E-value=0.97  Score=35.92  Aligned_cols=36  Identities=22%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..++++.|||-|.+|-++|..+..+|.+|..+.+..
T Consensus       153 ~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~  188 (319)
T 3cty_A          153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP  188 (319)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC
Confidence            347999999999999999999999999999988764

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=86.58  E-value=0.57  Score=41.88  Aligned_cols=39  Identities=23%  Similarity=0.191  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccC-CCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPF-GVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~~~  178 (189)
                      .+.+++|.|.| .|.||+.+++.|..- |.+|++.+|+...
T Consensus       312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~  352 (660)
T 1z7e_A          312 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA  352 (660)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTT
T ss_pred             hccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchh
Confidence            35789999999 699999999999877 8999999987654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=86.45  E-value=0.96  Score=35.18  Aligned_cols=38  Identities=11%  Similarity=0.024  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.++++.|+|-|.+|-++|..+..+| +|..+.+...
T Consensus       137 ~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          137 YELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             GGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             hhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            3456899999999999999999999999 9999987654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=86.42  E-value=0.9  Score=38.61  Aligned_cols=36  Identities=19%  Similarity=0.269  Sum_probs=32.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            689999999999999999999999999999876543

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=86.21  E-value=4.4  Score=32.91  Aligned_cols=70  Identities=11%  Similarity=0.048  Sum_probs=50.7

Q ss_pred             HhhCCeEEEec-CCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC---CHHHHHHHHHHccC-CCEEEE
Q 044056           97 LTNCAIKAARI-LGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF---GNIGVELAKRLRPF-GVKIIA  171 (189)
Q Consensus        97 ~~~~gI~v~n~-~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~---G~IG~~vA~~l~af-G~~V~~  171 (189)
                      +.-.+++|.|. -|.   +..++--++  =++.+.+++     ..+.|++|+++|=   +++....+..+.-| ||+|..
T Consensus       112 a~~~~vPVINaG~g~---~~HPtQ~La--Dl~Ti~e~~-----g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~  181 (299)
T 1pg5_A          112 SEISDIPVINAGDGK---HEHPTQAVI--DIYTINKHF-----NTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYL  181 (299)
T ss_dssp             HHHCSSCEEEEEETT---TBCHHHHHH--HHHHHHHHH-----SCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEE
T ss_pred             HHhCCCCEEeCCCCC---CcCcHHHHH--HHHHHHHHh-----CCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEE
Confidence            34567999998 554   444443333  333333331     2588999999998   59999999999999 999999


Q ss_pred             EcCCC
Q 044056          172 AKRSW  176 (189)
Q Consensus       172 ~~r~~  176 (189)
                      ..|..
T Consensus       182 ~~P~~  186 (299)
T 1pg5_A          182 ISPQL  186 (299)
T ss_dssp             ECCGG
T ss_pred             ECCch
Confidence            98854

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=86.21  E-value=0.63  Score=37.88  Aligned_cols=35  Identities=14%  Similarity=0.293  Sum_probs=28.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~  177 (189)
                      .++|+|||.|.+|..+|..+..-|.  +|..+|....
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            3789999999999999988875566  9999998764

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=86.17  E-value=0.54  Score=43.23  Aligned_cols=36  Identities=31%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      |++.+|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus       409 l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~  445 (805)
T 2nvu_B          409 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT  445 (805)
T ss_dssp             HHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCB
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCe
Confidence            389999999999999999999998888 688888754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=86.16  E-value=0.96  Score=37.76  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ++++.|||-|.+|.++|..+..+|.+|..+.+.....
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL  188 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence            7999999999999999999999999999998876543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=86.10  E-value=0.87  Score=39.59  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++|.|||-|.+|-++|..+..+|.+|..+.+....
T Consensus       150 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          150 NVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            3689999999999999999999999999999887544

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*

Probab=86.01  E-value=0.86  Score=38.03  Aligned_cols=37  Identities=11%  Similarity=-0.011  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+.+.+|||+|-| .|+.+++.++.+|++|+.+|++..
T Consensus        15 ~~~~~~I~ilGs~-l~~~l~~aAk~lG~~vi~vd~~~~   51 (361)
T 2r7k_A           15 NKDEITIATLGSH-TSLHILKGAKLEGFSTVCITMKGR   51 (361)
T ss_dssp             CTTSCEEEEESST-THHHHHHHHHHTTCCEEEEECTTS
T ss_pred             cccCCEEEEECcH-HHHHHHHHHHHCCCEEEEEECCCC
Confidence            4456889999988 999999999999999999998854

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=85.98  E-value=1  Score=38.30  Aligned_cols=37  Identities=30%  Similarity=0.380  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.+|-++|..+..+|.+|..+.+....
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA  207 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC
Confidence            4689999999999999999999999999999886543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=85.95  E-value=0.73  Score=39.71  Aligned_cols=33  Identities=15%  Similarity=0.357  Sum_probs=25.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHcc-CCCEEE-EEcCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRP-FGVKII-AAKRSW  176 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~a-fG~~V~-~~~r~~  176 (189)
                      -+|||||+|.||+..++.+.. -+++|. .+|+.+
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~   58 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRL   58 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSST
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCH
Confidence            589999999999999988874 477754 455554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=85.84  E-value=0.68  Score=39.43  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=27.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHccC-CCEEE-EEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPF-GVKII-AAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~af-G~~V~-~~~r~~~  177 (189)
                      .+|||||+|.||+..++.+... +++|. .+|+++.
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~   56 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPY   56 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHH
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHH
Confidence            5899999999999999988865 78864 6677653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=85.82  E-value=0.89  Score=37.87  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=33.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ++++.|+|-|.+|-++|..+..+|.+|..+.+.+...
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM  178 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence            7899999999999999999999999999998876543

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=85.79  E-value=1.4  Score=36.44  Aligned_cols=71  Identities=11%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             hhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEEcCC
Q 044056           98 TNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus        98 ~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .-.+|+|.|.-+.   +..++--  ++=++.+.+++   .+..+.|++|+++|=|  ++....+..+.-|||+|....|.
T Consensus       118 ~~~~vPVINa~~~---~~HPtQ~--LaDl~Ti~e~~---~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~  189 (333)
T 1duv_G          118 EYASVPVWNGLTN---EFHPTQL--LADLLTMQEHL---PGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQ  189 (333)
T ss_dssp             HHHSSCEEESCCS---SCCHHHH--HHHHHHHHHHS---TTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             HhCCCCeEcCCCC---CCCchHH--HHHHHHHHHHh---cCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCc
Confidence            3457999997654   4455543  33334444431   1326899999999986  99999999999999999999885


Q ss_pred             C
Q 044056          176 W  176 (189)
Q Consensus       176 ~  176 (189)
                      .
T Consensus       190 ~  190 (333)
T 1duv_G          190 A  190 (333)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=85.67  E-value=0.9  Score=38.47  Aligned_cols=37  Identities=22%  Similarity=0.147  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL  182 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            3689999999999999999999999999999887543

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=85.36  E-value=1.3  Score=38.01  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHc--------------------cCCC-EEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLR--------------------PFGV-KIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~--------------------afG~-~V~~~~r~~~  177 (189)
                      .+.+++|.|||-|.+|-++|+.|.                    ..|. +|..+.|...
T Consensus       142 ~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          142 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            457999999999999999999998                    6898 6988887653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=85.34  E-value=0.62  Score=39.57  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI  212 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            3689999999999999999999999999999887543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=85.31  E-value=0.64  Score=39.82  Aligned_cols=36  Identities=31%  Similarity=0.360  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .+++|.|||-|.+|-++|..++.+|.+|..+.+...
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            579999999999999999999999999999987643

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=85.30  E-value=5.2  Score=33.89  Aligned_cols=68  Identities=15%  Similarity=0.128  Sum_probs=46.6

Q ss_pred             eEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-----C---HHHHHHHHHHccCCCEEEEEc
Q 044056          102 IKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-----G---NIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       102 I~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-----G---~IG~~vA~~l~afG~~V~~~~  173 (189)
                      ++|.|.-+.   +..++--++  =++.+.+++.  ....|.|++|+|+|-     |   ++....+..+.-|||+|....
T Consensus       157 ~PVINal~d---~~HPtQaLa--Dl~TI~E~~G--~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~  229 (399)
T 3q98_A          157 PALVNLQCD---IDHPTQSMA--DLAWLREHFG--SLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAH  229 (399)
T ss_dssp             CEEEEEECS---SCCHHHHHH--HHHHHHHHHS--SSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEEC
T ss_pred             CcEEeCCCC---CcCcHHHHH--HHHHHHHHhC--CccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEEC
Confidence            589998654   445553333  3333333311  123588999999983     4   788999999999999999998


Q ss_pred             CCC
Q 044056          174 RSW  176 (189)
Q Consensus       174 r~~  176 (189)
                      |..
T Consensus       230 P~~  232 (399)
T 3q98_A          230 PEG  232 (399)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            863

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=85.27  E-value=0.45  Score=38.05  Aligned_cols=39  Identities=36%  Similarity=0.369  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHccCCC---EEEEEcCCCC
Q 044056          139 ETLLGKTVFISGF-GNIGVELAKRLRPFGV---KIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~-G~IG~~vA~~l~afG~---~V~~~~r~~~  177 (189)
                      ..+.||++.|.|- |.||+++|+.|..-|.   +|+..+|+..
T Consensus        29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~   71 (287)
T 3rku_A           29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLE   71 (287)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHH
Confidence            3578999999985 7899999999976666   9999998753

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=85.08  E-value=0.55  Score=37.21  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+. |++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~   56 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREE   56 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4566 8888887 478999999999999999999998753

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=85.06  E-value=0.6  Score=44.31  Aligned_cols=37  Identities=27%  Similarity=0.491  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC------EEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV------KIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~------~V~~~~r~~  176 (189)
                      .|++.+|.|||+|.+|.++++.|...|.      ++..+|...
T Consensus       422 kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~  464 (1015)
T 3cmm_A          422 KIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDS  464 (1015)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCB
T ss_pred             HHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCE
Confidence            4678999999999999999999987776      788888643

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=85.01  E-value=5.9  Score=32.27  Aligned_cols=69  Identities=19%  Similarity=0.214  Sum_probs=49.0

Q ss_pred             HhhCCeEEEecC-CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC---HHHHHHHHHHccCCCEEEEE
Q 044056           97 LTNCAIKAARIL-GDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG---NIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus        97 ~~~~gI~v~n~~-g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G---~IG~~vA~~l~afG~~V~~~  172 (189)
                      +...+|+|.|.- |.   +..++--+  +=++.+.+++     ..+.|++|+++|=|   ++.+..+..+.-|||+|...
T Consensus       110 a~~~~vPVINagdg~---~~HPtQaL--aDl~Ti~e~~-----g~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~  179 (304)
T 3r7f_A          110 VSQVNIPILNAGDGC---GQHPTQSL--LDLMTIYEEF-----NTFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFS  179 (304)
T ss_dssp             HHHCSSCEEESCCTT---SCCHHHHH--HHHHHHHHHH-----SCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHhCCCCEEeCCCCC---CcCcHHHH--HHHHHHHHHh-----CCCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEE
Confidence            344689999985 33   33444333  3333333331     25889999999975   79999999999999999998


Q ss_pred             cCC
Q 044056          173 KRS  175 (189)
Q Consensus       173 ~r~  175 (189)
                      .|.
T Consensus       180 ~P~  182 (304)
T 3r7f_A          180 GPS  182 (304)
T ss_dssp             SCG
T ss_pred             CCC
Confidence            874

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=85.00  E-value=1.2  Score=34.86  Aligned_cols=37  Identities=27%  Similarity=0.179  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..++++.|+|-|.+|-++|..+..+|.+|..+.+...
T Consensus       145 ~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~  181 (315)
T 3r9u_A          145 YKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDE  181 (315)
T ss_dssp             GTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             cCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence            4579999999999999999999999999999987654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=84.94  E-value=0.78  Score=39.30  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++|.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI  233 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence            4689999999999999999999999999999876543

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=84.81  E-value=0.94  Score=36.75  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=27.3

Q ss_pred             CEEEEEc-CCHHHHHHHHHHc-cCCCEEE-EEcCCCC
Q 044056          144 KTVFISG-FGNIGVELAKRLR-PFGVKII-AAKRSWA  177 (189)
Q Consensus       144 ktvGIvG-~G~IG~~vA~~l~-afG~~V~-~~~r~~~  177 (189)
                      .+|+|+| +|++|+.+++.+. .=++++. ++|+...
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~   58 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS   58 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence            4899999 9999999999876 5588855 4577643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=84.72  E-value=0.94  Score=35.65  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++++.|+|-|.+|-++|..+...|.+|..+.+...
T Consensus       151 ~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~  188 (323)
T 3f8d_A          151 LFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT  188 (323)
T ss_dssp             GGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS
T ss_pred             HcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC
Confidence            44689999999999999999999999999999988754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=84.72  E-value=1.1  Score=38.01  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF  215 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            4689999999999999999999999999999876543

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=84.70  E-value=4.9  Score=33.09  Aligned_cols=94  Identities=17%  Similarity=0.134  Sum_probs=59.8

Q ss_pred             HHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEE
Q 044056           70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFIS  149 (189)
Q Consensus        70 ~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIv  149 (189)
                      ...|.++..  .|......-..+ ...+.-.+++|.|.-+.   +..++--++  =++.+.+++     ..+.|++|+++
T Consensus       107 arvLs~~~D--~iviR~~~~~~~-~~lA~~~~vPVINa~~~---~~HPtQaLa--Dl~Ti~e~~-----g~l~gl~va~v  173 (325)
T 1vlv_A          107 ARVLGRMVD--AIMFRGYKQETV-EKLAEYSGVPVYNGLTD---EFHPTQALA--DLMTIEENF-----GRLKGVKVVFM  173 (325)
T ss_dssp             HHHHHTTCS--EEEEESSCHHHH-HHHHHHHCSCEEESCCS---SCCHHHHHH--HHHHHHHHH-----SCSTTCEEEEE
T ss_pred             HHHHHHhCC--EEEEECCChHHH-HHHHHhCCCCEEeCCCC---CCCcHHHHH--HHHHHHHHh-----CCcCCcEEEEE
Confidence            345666644  333333221112 22333457999996543   445544333  333333431     26899999999


Q ss_pred             cCC--HHHHHHHHHHccCCCEEEEEcCCC
Q 044056          150 GFG--NIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       150 G~G--~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      |=|  ++.+..+..+.-|||+|....|..
T Consensus       174 GD~~~rva~Sl~~~~~~~G~~v~~~~P~~  202 (325)
T 1vlv_A          174 GDTRNNVATSLMIACAKMGMNFVACGPEE  202 (325)
T ss_dssp             SCTTSHHHHHHHHHHHHTTCEEEEESCGG
T ss_pred             CCCCcCcHHHHHHHHHHCCCEEEEECCcc
Confidence            986  999999999999999999998854

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=84.67  E-value=0.55  Score=43.31  Aligned_cols=37  Identities=16%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      --.|.+|.|.|. |.||....+.++.+|++|++.+++.
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~  380 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED  380 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH
Confidence            346899999995 9999999999999999999988654

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=84.57  E-value=0.66  Score=41.35  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=31.5

Q ss_pred             CCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056          136 PTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      .....+.||++.|.|- |.||+++|+.|..-|++|+..++
T Consensus        12 ~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r   51 (613)
T 3oml_A           12 DGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDL   51 (613)
T ss_dssp             ---CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--
T ss_pred             ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3456799999999986 67999999999999999999987

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=84.48  E-value=6.9  Score=31.66  Aligned_cols=71  Identities=14%  Similarity=0.068  Sum_probs=50.7

Q ss_pred             HHhhCCeEEEe-cCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC---CHHHHHHHHHHccCCCEEEE
Q 044056           96 ALTNCAIKAAR-ILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF---GNIGVELAKRLRPFGVKIIA  171 (189)
Q Consensus        96 ~~~~~gI~v~n-~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~---G~IG~~vA~~l~afG~~V~~  171 (189)
                      .++-.+++|.| .-|.   +..++--+  +=++.+.+++     ..+.|++|+++|=   +++.+..+..+.-|||+|..
T Consensus       108 la~~~~vPVINAG~g~---~~HPtQaL--aDl~Ti~e~~-----g~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~  177 (291)
T 3d6n_B          108 IVKSLNLRLVNAGDGT---HQHPSQGL--IDFFTIKEHF-----GEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGV  177 (291)
T ss_dssp             HHHTCSSEEEEEEETT---TBCHHHHH--HHHHHHHHHH-----SCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCCCEEeCccCC---CcCcHHHH--HHHHHHHHHh-----CCcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEE
Confidence            34456799999 4343   44444333  3333333331     2588999999997   99999999999999999999


Q ss_pred             EcCCC
Q 044056          172 AKRSW  176 (189)
Q Consensus       172 ~~r~~  176 (189)
                      ..|..
T Consensus       178 ~~P~~  182 (291)
T 3d6n_B          178 CGPKT  182 (291)
T ss_dssp             ESCGG
T ss_pred             ECCch
Confidence            98854

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=84.43  E-value=1.1  Score=38.40  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEEcCC----------HHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFG----------NIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +..+.|++|+|+|+-          .=...+++.|...|++|.+|||...
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~  362 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAM  362 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCH
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCc
Confidence            457899999999984          4578999999999999999999874

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=84.40  E-value=0.83  Score=37.38  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHccCC-CEEEEEcC
Q 044056          141 LLGKTVFISGF-GNIGVELAKRLRPFG-VKIIAAKR  174 (189)
Q Consensus       141 l~gktvGIvG~-G~IG~~vA~~l~afG-~~V~~~~r  174 (189)
                      -.|++|.|.|. |.+|...++.++..| .+|++.+.
T Consensus       141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~  176 (349)
T 4a27_A          141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS  176 (349)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEEC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCC
Confidence            35899999999 999999999999985 78888764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=84.35  E-value=1.1  Score=38.02  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++.|+|-|.||-++|..+..+|.+|..+.+...-
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            578999999999999999999999999998876543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=84.21  E-value=1.3  Score=38.75  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  222 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV  222 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            4789999999999999999999999999999876543

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=84.10  E-value=0.98  Score=38.75  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus       209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~  247 (454)
T 3u0b_A          209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG  247 (454)
T ss_dssp             STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred             cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            457899999997 69999999999998999999998864

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=84.07  E-value=1.2  Score=38.49  Aligned_cols=36  Identities=17%  Similarity=0.373  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.|.|||-|..|...|..|...|.+|..+++...
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~  126 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK  126 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence            467899999999999999999999999999998643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=83.74  E-value=0.69  Score=39.07  Aligned_cols=36  Identities=22%  Similarity=0.058  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccC--CCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPF--GVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~af--G~~V~~~~r~~~  177 (189)
                      .+++|.|||-|.+|-++|..|...  |.+|..+.|+..
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            589999999999999999999988  899999988764

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=83.73  E-value=5.3  Score=32.47  Aligned_cols=71  Identities=21%  Similarity=0.138  Sum_probs=51.7

Q ss_pred             HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056           97 LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus        97 ~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      +.-.+++|.|.-+.   +..++--++  =++.+.+++     ..+.|++|+++|= +++.+..+..+.-||++|....|.
T Consensus       118 a~~~~vPVINa~~~---~~HPtQaLa--Dl~Ti~e~~-----g~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~  187 (301)
T 2ef0_A          118 ARHAKVPVVNALSD---RAHPLQALA--DLLTLKEVF-----GGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPK  187 (301)
T ss_dssp             HHHCSSCEEEEECS---SCCHHHHHH--HHHHHHHHH-----SCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCT
T ss_pred             HHHCCCCEEeCCCC---ccCchHHHH--HHHHHHHHh-----CCcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCc
Confidence            34457999997664   445554333  333333331     2588999999997 899999999999999999999986


Q ss_pred             CC
Q 044056          176 WA  177 (189)
Q Consensus       176 ~~  177 (189)
                      .-
T Consensus       188 ~~  189 (301)
T 2ef0_A          188 GY  189 (301)
T ss_dssp             TC
T ss_pred             hh
Confidence            43

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=83.72  E-value=0.55  Score=39.42  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=24.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHccC---------CCEEEE-EcCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPF---------GVKIIA-AKRSW  176 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~af---------G~~V~~-~~r~~  176 (189)
                      .+|||||+|.||+.-++.++..         +++|.+ +|+.+
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~   69 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQ   69 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCH
Confidence            4899999999999887777643         467654 56654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=83.55  E-value=0.8  Score=39.26  Aligned_cols=37  Identities=30%  Similarity=0.324  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      -.+++|.|||-|..|...|..|...|.+|..+++...
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~  156 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDR  156 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            4688999999999999999999988999999998643

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=83.45  E-value=0.6  Score=39.62  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCC---EEEEEcCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGV---KIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~---~V~~~~r~~  176 (189)
                      ..-+|.|+|. |..|+..++.++++|+   .|..||++.
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            4668899999 9999999999999998   899999865

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=83.44  E-value=7.2  Score=31.91  Aligned_cols=71  Identities=18%  Similarity=0.222  Sum_probs=51.4

Q ss_pred             HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056           97 LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus        97 ~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      +.-.+++|.|.-+.   +..++--++  =++.+.+++     ..+.|++|+++|= +++.+..+..+.-||++|....|.
T Consensus       119 A~~~~vPVINa~~~---~~HPtQaLa--Dl~Ti~e~~-----g~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~  188 (315)
T 1pvv_A          119 AKYATVPVINGLSD---FSHPCQALA--DYMTIWEKK-----GTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPE  188 (315)
T ss_dssp             HHHCSSCEEEEECS---SCCHHHHHH--HHHHHHHHH-----SCCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred             HHhCCCCEEcCCCC---CCCcHHHHH--HHHHHHHHh-----CCcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCc
Confidence            34457999997553   445544333  333333431     2688999999997 899999999999999999999986


Q ss_pred             CC
Q 044056          176 WA  177 (189)
Q Consensus       176 ~~  177 (189)
                      .-
T Consensus       189 ~~  190 (315)
T 1pvv_A          189 GY  190 (315)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=83.43  E-value=1  Score=42.79  Aligned_cols=39  Identities=26%  Similarity=0.297  Sum_probs=34.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ...|.+++|.|+|+|.+|.++|+.|..-|. ++..+|...
T Consensus        22 q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~   61 (1015)
T 3cmm_A           22 MLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEP   61 (1015)
T ss_dssp             HHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSB
T ss_pred             HHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCE
Confidence            456889999999999999999999998887 688888754

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=83.40  E-value=4.8  Score=33.60  Aligned_cols=94  Identities=16%  Similarity=0.036  Sum_probs=61.2

Q ss_pred             HHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEE
Q 044056           70 SNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFIS  149 (189)
Q Consensus        70 ~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIv  149 (189)
                      ...|.++..  .|....-.-..+ ...+.-.+|+|.|.-+.   +..++--++  =++.+.+++     ..+.|++|+++
T Consensus       116 arvLs~~~D--~IviR~~~~~~~-~~lA~~s~vPVINa~~~---~~HPtQaLa--Dl~Ti~E~~-----g~l~gl~va~v  182 (359)
T 2w37_A          116 AKVLGSMFD--GIEFRGFKQSDA-EILARDSGVPVWNGLTD---EWHPTQMLA--DFMTVKENF-----GKLQGLTLTFM  182 (359)
T ss_dssp             HHHHHHHCS--EEEEESSCHHHH-HHHHHHSSSCEEEEECS---SCCHHHHHH--HHHHHHHHH-----SCCTTCEEEEE
T ss_pred             HHHHHHhcC--EEEEecCChHHH-HHHHHhCCCCEEcCCCC---CCCccHHHH--HHHHHHHHh-----CCcCCeEEEEE
Confidence            445666644  343443321112 23344568999997654   445554333  333333431     26889999999


Q ss_pred             cCC--HHHHHHHHHHccCCCEEEEEcCCC
Q 044056          150 GFG--NIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       150 G~G--~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      |=|  ++....+..+.-|||+|....|..
T Consensus       183 GD~~~rva~Sl~~~~~~lG~~v~~~~P~~  211 (359)
T 2w37_A          183 GDGRNNVANSLLVTGAILGVNIHIVAPKA  211 (359)
T ss_dssp             SCTTSHHHHHHHHHHHHHTCEEEEECCGG
T ss_pred             CCCccchHHHHHHHHHHcCCEEEEECCcc
Confidence            986  999999999999999999998854

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=83.34  E-value=1.1  Score=38.57  Aligned_cols=36  Identities=28%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccC---CCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPF---GVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~af---G~~V~~~~r~~~~  178 (189)
                      .+++.|||-|.||-++|..++.+   |.+|..+.+....
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            68999999999999999999999   9999999887543

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=83.14  E-value=5.2  Score=33.14  Aligned_cols=75  Identities=11%  Similarity=0.054  Sum_probs=52.5

Q ss_pred             HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcC
Q 044056           96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      .+...+|+|.|.-+.   +..++-  +++=++.+.++++  .+..+.|++|++||= +++....+..+.-|||+|....|
T Consensus       135 lA~~~~vPVINag~~---~~HPtQ--aLaDl~Ti~e~~~--~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P  207 (339)
T 4a8t_A          135 LANCATIPVINGMSD---YNHPTQ--ELGDLCTMVEHLP--EGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGP  207 (339)
T ss_dssp             HHHHCSSCEEECCCS---SCCHHH--HHHHHHHHHHTCC--TTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHhCCCCEEECCCC---CcCcHH--HHHHHHHHHHHhh--cCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECC
Confidence            345568999998654   434443  3344444455421  133689999999986 68888899999999999999988


Q ss_pred             CCC
Q 044056          175 SWA  177 (189)
Q Consensus       175 ~~~  177 (189)
                      ..-
T Consensus       208 ~~~  210 (339)
T 4a8t_A          208 EGF  210 (339)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=83.05  E-value=0.96  Score=35.91  Aligned_cols=35  Identities=23%  Similarity=0.103  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+.|.|||-|..|-..|..|...|.+|..+++..
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46789999999999999999999999999999854

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=83.01  E-value=1.2  Score=38.34  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccC---CCEEEEEcCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPF---GVKIIAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~af---G~~V~~~~r~~~  177 (189)
                      .+++.|||-|.||-++|..+..+   |.+|..+.+...
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  224 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM  224 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC
Confidence            68999999999999999999999   999999988754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=82.78  E-value=1.2  Score=38.32  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..+++.|||-|.||-++|..+..+|.+|..+.+....
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV  217 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            3589999999999999999999999999999887544

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=82.67  E-value=1.4  Score=36.10  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHcc-CC-CEEEEEcCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRP-FG-VKIIAAKRSW  176 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~a-fG-~~V~~~~r~~  176 (189)
                      ...|.|||-|-+|..+|..|.. .| .+|..+++..
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            4579999999999999999998 89 9999999875

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=82.62  E-value=5.5  Score=33.22  Aligned_cols=74  Identities=11%  Similarity=0.060  Sum_probs=52.0

Q ss_pred             HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCC
Q 044056           97 LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus        97 ~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      +...+|+|.|.-+.   +..++-  +++=++.+.++++  .+..+.|++|++||= +++....+..+.-|||+|....|.
T Consensus       114 A~~~~vPVINag~~---~~HPtQ--aLaDl~TI~E~~~--~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~  186 (355)
T 4a8p_A          114 ANCATIPVINGMSD---YNHPTQ--ELGDLCTMVEHLP--EGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPE  186 (355)
T ss_dssp             HHHCSSCEEECCCS---SCCHHH--HHHHHHHHHHTCC--TTCCGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred             HHhCCCCEEeCCCC---CCCcHH--HHHHHHHHHHHhh--cCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCC
Confidence            44568999998654   434443  3344444455421  133689999999986 688888999999999999999886


Q ss_pred             CC
Q 044056          176 WA  177 (189)
Q Consensus       176 ~~  177 (189)
                      .-
T Consensus       187 ~~  188 (355)
T 4a8p_A          187 GF  188 (355)
T ss_dssp             TS
T ss_pred             cc
Confidence            43

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=82.56  E-value=1  Score=37.73  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCC-CEEEEEcCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFG-VKIIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG-~~V~~~~r~  175 (189)
                      ....|.|||-|-+|..+|..|...| .+|..+++.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            3457999999999999999999889 999999983

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=82.36  E-value=2.1  Score=36.89  Aligned_cols=40  Identities=15%  Similarity=0.092  Sum_probs=33.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHc--cCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLR--PFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~--afG~~V~~~~r~~~  177 (189)
                      ...+.||+|+|||.|..|-.++.-|.  .-+.+|..+.|++.
T Consensus       241 ~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          241 KDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             CCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             ccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            45689999999999999999987773  45789999888753

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=82.07  E-value=1.5  Score=37.50  Aligned_cols=37  Identities=16%  Similarity=0.129  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCC-HHHHHHHHHHcc-CCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFG-NIGVELAKRLRP-FGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G-~IG~~vA~~l~a-fG~~V~~~~r~~~~  178 (189)
                      .+|++.|.|-+ .||+++|+.|.. -|++|+..++....
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~   98 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPG   98 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchh
Confidence            58999999875 799999999998 99999999887544

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=82.02  E-value=1.6  Score=37.05  Aligned_cols=36  Identities=33%  Similarity=0.452  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++++.|+|-|.+|-++|..+..+|.+|..+.+...
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~  204 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE  204 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            378999999999999999999999999999987654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=81.94  E-value=1.4  Score=37.43  Aligned_cols=37  Identities=24%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccC-CCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPF-GVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~~  178 (189)
                      .++++.|||-|.+|.++|..+..+ |.+|..+.+....
T Consensus       158 ~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          158 EVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             SCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            368999999999999999999998 9999999886543

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=81.94  E-value=2.2  Score=37.61  Aligned_cols=68  Identities=21%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             hCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHcc----CCC-------
Q 044056           99 NCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRP----FGV-------  167 (189)
Q Consensus        99 ~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~a----fG~-------  167 (189)
                      +..|++.|.--      +-+|=-+++.+|+.+|-    .+..|.+.++-+.|.|.-|-.+|+.+..    .|+       
T Consensus       248 r~~ipvFnDDi------qGTa~V~lAgllnAlki----~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~  317 (555)
T 1gq2_A          248 RNKYCTFNDDI------QGTASVAVAGLLAALRI----TKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIK  317 (555)
T ss_dssp             TTTSEEEETTT------HHHHHHHHHHHHHHHHH----HTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred             hccCCEecCcc------chHHHHHHHHHHHHHHH----hCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhC
Confidence            44799998532      66888899999999984    6789999999999999999999999987    685       


Q ss_pred             EEEEEcCCC
Q 044056          168 KIIAAKRSW  176 (189)
Q Consensus       168 ~V~~~~r~~  176 (189)
                      +|+.+|+.+
T Consensus       318 ~i~~~D~~G  326 (555)
T 1gq2_A          318 RIWMVDSKG  326 (555)
T ss_dssp             TEEEEETTE
T ss_pred             cEEEEECCC
Confidence            689898753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=81.80  E-value=1.6  Score=37.27  Aligned_cols=36  Identities=39%  Similarity=0.484  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .++++.|||-|.+|.++|..+..+|.+|..+.+...
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  225 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDL  225 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCc
Confidence            478999999999999999999999999999987654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=81.79  E-value=1.3  Score=35.97  Aligned_cols=34  Identities=18%  Similarity=0.055  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...|.|||-|-+|..+|..|...|.+|+.+++..
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4679999999999999999998999999999864

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=81.43  E-value=1.1  Score=36.52  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=27.9

Q ss_pred             CCEEEEEcCC-HHHHHHHHHHccC--CCEE-EEEcCCCC
Q 044056          143 GKTVFISGFG-NIGVELAKRLRPF--GVKI-IAAKRSWA  177 (189)
Q Consensus       143 gktvGIvG~G-~IG~~vA~~l~af--G~~V-~~~~r~~~  177 (189)
                      -.+|||||+| .+|+..++.++..  ++++ -.+|+++.
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~   56 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRS   56 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHH
Confidence            3689999999 8999999998876  5786 46777643

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=81.41  E-value=3.8  Score=33.46  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             HhhCCeEEEecCC-CCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC---CHHHHHHHHHHccCCCEEEEE
Q 044056           97 LTNCAIKAARILG-DVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF---GNIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus        97 ~~~~gI~v~n~~g-~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~---G~IG~~vA~~l~afG~~V~~~  172 (189)
                      +.-.+++|.|.-+ .   +..++-  +++=++.+.+++     ..+.|++|+++|=   |++.+..+..+.-|||+|...
T Consensus       118 a~~~~vPVINag~g~---~~HPtQ--~LaDl~Ti~e~~-----g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~  187 (308)
T 1ml4_A          118 AEVAEVPVINAGDGS---NQHPTQ--TLLDLYTIKKEF-----GRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLI  187 (308)
T ss_dssp             HHTCSSCEEEEEETT---SCCHHH--HHHHHHHHHHHS-----SCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEE
T ss_pred             HHhCCCCEEeCccCC---ccCcHH--HHHHHHHHHHHh-----CCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEE
Confidence            3445799999753 3   334443  333334444432     2588999999998   489999999999999999999


Q ss_pred             cCCC
Q 044056          173 KRSW  176 (189)
Q Consensus       173 ~r~~  176 (189)
                      .|..
T Consensus       188 ~P~~  191 (308)
T 1ml4_A          188 SPEL  191 (308)
T ss_dssp             CCGG
T ss_pred             CCcc
Confidence            8854

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=81.22  E-value=1.6  Score=37.53  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCH----------HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGN----------IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~----------IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.|++|+|+|+--          =...+++.|...|++|.+|||....
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~  374 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPR  374 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCH
Confidence            58999999999974          7889999999999999999998543

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=81.19  E-value=6.8  Score=32.77  Aligned_cols=70  Identities=16%  Similarity=0.161  Sum_probs=49.7

Q ss_pred             HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC--HHHHHHHHHHccCCCEEEEEcC
Q 044056           97 LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG--NIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus        97 ~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G--~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      +.-.+|+|.|.-+.   ...++--++  =++.+.++    .+ .+.|++|++||=+  ++....+..+.-|||+|....|
T Consensus       144 A~~s~vPVINa~~~---~~HPtQaLa--Dl~Ti~E~----~G-~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P  213 (365)
T 4amu_A          144 VKYSGVPVWNGLTD---DEHPTQIIA--DFMTMKEK----FG-NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGP  213 (365)
T ss_dssp             HHHHCSCEEEEECS---SCCHHHHHH--HHHHHHHH----HS-SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESC
T ss_pred             HHhCCCCEEeCCCC---CCCcHHHHH--HHHHHHHH----hC-CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECC
Confidence            34568999998654   444443332  23333332    12 4899999999988  7899999999999999999988


Q ss_pred             CC
Q 044056          175 SW  176 (189)
Q Consensus       175 ~~  176 (189)
                      ..
T Consensus       214 ~~  215 (365)
T 4amu_A          214 DN  215 (365)
T ss_dssp             GG
T ss_pred             cc
Confidence            53

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=81.02  E-value=12  Score=30.43  Aligned_cols=70  Identities=14%  Similarity=0.134  Sum_probs=49.8

Q ss_pred             HhhCCeEEEecC-CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC---CHHHHHHHHHHccC-CCEEEE
Q 044056           97 LTNCAIKAARIL-GDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF---GNIGVELAKRLRPF-GVKIIA  171 (189)
Q Consensus        97 ~~~~gI~v~n~~-g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~---G~IG~~vA~~l~af-G~~V~~  171 (189)
                      +.-.+|+|.|.- |.   +..++--  ++=++.+.+++     ..+.|++|++||=   |++....+..+.-| ||+|..
T Consensus       114 A~~~~vPVINag~g~---~~HPtQ~--LaDl~Ti~e~~-----g~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~  183 (306)
T 4ekn_B          114 SEYSQVPIINAGDGS---NQHPTQT--LLDLYTIMREI-----GRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYF  183 (306)
T ss_dssp             HHHCSSCEEESCSSS---SCCHHHH--HHHHHHHHHHH-----SCSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHhCCCCEEeCCCCC---CcCcHHH--HHHHHHHHHHh-----CCcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEE
Confidence            445689999984 33   3344433  33333333331     2588999999997   58999999999999 999999


Q ss_pred             EcCCC
Q 044056          172 AKRSW  176 (189)
Q Consensus       172 ~~r~~  176 (189)
                      ..|..
T Consensus       184 ~~P~~  188 (306)
T 4ekn_B          184 VSPKE  188 (306)
T ss_dssp             ECCGG
T ss_pred             ECCcc
Confidence            98853

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=80.94  E-value=1.8  Score=37.02  Aligned_cols=38  Identities=18%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      ...||+|.|||-|.+|-.+|..+..+|. +|..+.|...
T Consensus       261 ~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          261 NAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             ccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            3679999999999999999999998998 4888877643

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=80.86  E-value=1.9  Score=34.14  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHccC-CCEEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPF-GVKIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~  177 (189)
                      ..|.|||-|.+|-..|..|... |.+|..+++...
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~   74 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   74 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence            5799999999999999999987 999999998654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=80.85  E-value=1.2  Score=37.87  Aligned_cols=35  Identities=26%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCC----------HHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFG----------NIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .|++|+|+|+.          .=...+++.|...|++|.+|||..
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~  356 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNV  356 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCC
Confidence            79999999997          678999999999999999999963

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=80.85  E-value=6.1  Score=32.89  Aligned_cols=73  Identities=16%  Similarity=0.132  Sum_probs=52.1

Q ss_pred             hHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcC--CHHHHHHHHHHccCCCEEEEE
Q 044056           95 DALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGF--GNIGVELAKRLRPFGVKIIAA  172 (189)
Q Consensus        95 ~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~--G~IG~~vA~~l~afG~~V~~~  172 (189)
                      ..+...+|+|.|.-|.   +..++-  +++=++.+.++   ..+..+.|++|++||=  +++.+..+..+.-||++|...
T Consensus       141 ~la~~s~vPVING~g~---~~HPtQ--aL~Dl~Ti~e~---~~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~  212 (358)
T 4h31_A          141 ELGAFAGVPVWNGLTD---EFHPTQ--ILADFLTMLEH---SQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLV  212 (358)
T ss_dssp             HHHHHSSSCEEESCCS---SCCHHH--HHHHHHHHHHT---TTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             HhhhhccCceECCCCc---CCCchH--HHHHHHHHHHH---hcCCCcCceEEEecCCCCcccchHHHHHHHhcCceEEEe
Confidence            3345578999994443   434443  33444444443   2345789999999995  489999999999999999999


Q ss_pred             cCC
Q 044056          173 KRS  175 (189)
Q Consensus       173 ~r~  175 (189)
                      .|.
T Consensus       213 ~P~  215 (358)
T 4h31_A          213 GPQ  215 (358)
T ss_dssp             SCG
T ss_pred             CCc
Confidence            874

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=80.74  E-value=7.6  Score=31.87  Aligned_cols=71  Identities=24%  Similarity=0.155  Sum_probs=50.0

Q ss_pred             HhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCC-HHHHHHHHHHccCCCEEEEEcCC
Q 044056           97 LTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFG-NIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus        97 ~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G-~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      +.-.+++|.|.-+.   +..++--++  =++.+.+++     ..+.|++|++||=| ++.+..+..+.-|||+|....|.
T Consensus       119 A~~~~vPVINa~~~---~~HPtQaLa--Dl~Ti~e~~-----g~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~  188 (321)
T 1oth_A          119 AKEASIPIINGLSD---LYHPIQILA--DYLTLQEHY-----SSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPK  188 (321)
T ss_dssp             HHHCSSCEEESCCS---SCCHHHHHH--HHHHHHHHH-----SCCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCT
T ss_pred             HHhCCCCEEcCCCC---CCCcHHHHH--HHHHHHHHh-----CCcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCc
Confidence            34457999997654   555554333  333333431     25899999999985 58888888888999999999986


Q ss_pred             CC
Q 044056          176 WA  177 (189)
Q Consensus       176 ~~  177 (189)
                      .-
T Consensus       189 ~~  190 (321)
T 1oth_A          189 GY  190 (321)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=80.67  E-value=0.77  Score=38.85  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEE-EcC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIA-AKR  174 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~-~~r  174 (189)
                      .++|.|+|.|..|+++++.++.-|++|++ +|.
T Consensus        52 ~~~v~IiGAG~~G~~l~~~l~~~g~~ivgfiDd   84 (409)
T 2py6_A           52 ATRLVILGTKGFGAHLMNVRHERPCEVIAAVDD   84 (409)
T ss_dssp             GCEEEEECSSSTHHHHHSCSSSCSSEEEEEECT
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHCCCEEEEEEeC
Confidence            36799999999999999999888999765 464

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=80.66  E-value=2.3  Score=36.31  Aligned_cols=38  Identities=24%  Similarity=0.434  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccC--------------------CC-EEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPF--------------------GV-KIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~af--------------------G~-~V~~~~r~~~  177 (189)
                      .+.+++|.|||-|.+|-++|..|...                    |. +|..+.|...
T Consensus       144 ~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          144 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            45799999999999999999998864                    76 8988887653

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=80.64  E-value=2.4  Score=35.62  Aligned_cols=39  Identities=15%  Similarity=0.004  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCC----------HHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFG----------NIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.|++|+|+|+-          .=...+++.|...|++|.+|||..++
T Consensus       306 ~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~  354 (402)
T 1dlj_A          306 ESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNK  354 (402)
T ss_dssp             CCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSC
T ss_pred             CCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCCh
Confidence            6899999999984          46789999999999999999997543

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=80.55  E-value=1.9  Score=37.67  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=31.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..|.|||.|-.|..+|..|...|.+|+.+++....
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            46999999999999999999999999999987644

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=80.42  E-value=1.5  Score=37.37  Aligned_cols=36  Identities=28%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+.|.|||-|-.|-..|..|+..|.+|..+.+...
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~   67 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   67 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            357899999999999999999999999999988654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=80.08  E-value=2.1  Score=36.57  Aligned_cols=40  Identities=15%  Similarity=0.186  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcCC----------HHHHHHHHHHccC-CCEEEEEcCCCCCc
Q 044056          140 TLLGKTVFISGFG----------NIGVELAKRLRPF-GVKIIAAKRSWASH  179 (189)
Q Consensus       140 ~l~gktvGIvG~G----------~IG~~vA~~l~af-G~~V~~~~r~~~~~  179 (189)
                      .+.|++|+|+|+-          .-...+++.|... |++|.+|||...+.
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~  362 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD  362 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc
Confidence            4789999999984          4578999999988 99999999987653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=80.03  E-value=2.7  Score=37.23  Aligned_cols=38  Identities=24%  Similarity=0.208  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.....|.|||-|..|..+|..|...|.+|..+++...
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~   57 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF   57 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCC
Confidence            34568999999999999999999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	4e-07
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	1e-04
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	5e-04
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	9e-04
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	0.002
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	0.003
d1v9la1	242	c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob	0.004

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 44.6 bits (105), Expect = 4e-07
 Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 19/99 (19%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSG-NAASCAELSIYLML 127
            +  + +   +  I     GL+ +  +++          +   +G N      +   +++
Sbjct: 41  TAEELAKMPRLKFIQVVTAGLDHLPWESI-----PPHVTVAGNAGSNGYGNERVWRQMVM 95

Query: 128 GLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFG 166
             +R              +     G     +AKR    G
Sbjct: 96  EAVR-------------NLITYATGGRPRNIAKREDYIG 121

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIA 171
                 KT  + GFGN+G+   + L  FG K +A
Sbjct: 31  TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVA 64

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 125 LMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQVC 183
           L+ G+ R     T   + GK   ++G+G++G   A+ LR FG ++I  +    +  Q  
Sbjct: 10  LIDGIKRA----TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA 64

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 36.3 bits (83), Expect = 9e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKII 170
            +L G TV + G G +G  LA      G +++
Sbjct: 23  GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLL 54

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 69  DSNVITRANPMNLIIRFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLG 128
               + +   + +I+R   G + +DI +  +  I    +       +    + SI +   
Sbjct: 56  TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNV----PAASVYSEQASIEMREE 111

Query: 129 LLRK 132
             R+
Sbjct: 112 AARE 115

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 5/66 (7%), Positives = 17/66 (25%), Gaps = 8/66 (12%)

Query: 69  DSNVITRANPMNLII--RFRVGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLM 126
            +  +       +       VG++ +D+        +   +         S    ++  M
Sbjct: 58  IAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNV------PVYSYTTHAVRNM 111

Query: 127 LGLLRK 132
           +     
Sbjct: 112 VVKAFD 117

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS 175
              + GKTV I G GN+G   A  L   G K+IA    
Sbjct: 26  WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.94
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.93
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.9
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.88
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.86
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.83
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.83
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.79
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.75
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.74
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.74
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.73
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.72
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.71
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.68
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.64
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.82
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.35
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.02
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.92
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.89
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.77
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.71
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.53
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.32
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.23
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.22
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.19
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.11
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.98
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.92
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.91
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.82
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.77
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.77
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.75
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.7
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.66
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.63
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.58
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.57
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.49
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.34
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.29
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.24
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.22
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.18
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.11
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.11
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.08
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.98
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.91
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.9
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.84
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.83
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.82
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.78
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.71
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.62
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.61
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.45
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.42
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.36
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.34
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.3
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.16
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.12
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.08
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.04
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.02
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.99
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.95
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.93
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.88
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.86
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.84
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.78
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.77
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.76
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.73
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.55
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.52
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	94.34
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.17
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.15
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.14
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.08
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.83
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.81
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	93.6
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	93.48
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.44
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.38
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.27
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.17
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.96
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	92.92
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.71
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.55
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.52
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.43
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.28
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.2
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.01
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.79
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.75
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.72
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.68
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.25
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.81
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.78
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.68
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.55
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	90.43
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.33
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	90.17
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	89.62
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.15
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.51
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	88.4
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.15
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	87.56
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.44
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	87.06
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	87.01
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.17
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	86.11
d2fcra_	173	Flavodoxin {Chondrus crispus [TaxId: 2769]}	85.88
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	84.48
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	84.25
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	84.1
d1yoba1	179	Flavodoxin {Azotobacter vinelandii [TaxId: 354]}	83.25
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	82.3
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	81.99
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.93
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	81.47

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.94  E-value=2e-29  Score=181.83  Aligned_cols=120  Identities=13%  Similarity=0.123  Sum_probs=99.7

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCchhHHhhcCCCeE-EecCCCCCHHHHhcCCCCeEEEEcCCCCCcCChh
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFLSMHSLYASYGT-SEQMIASDSNVITRANPMNLIIRFRVGLEGVDID   95 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~adv-i~~~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~   95 (189)
                      |||+++.+.+++.    .+.++.+  .++...     ..++++|+ +.  ++++++.++++|+||||++.|+|+||+|++
T Consensus         1 Mki~v~~~lp~e~----~e~L~~~--~~v~~~-----~d~~~~d~~l~--~~~~~~~l~~~~~Lk~i~~~~aG~D~i~~~   67 (121)
T d1qp8a2           1 MELYVNFELPPEA----EEELRKY--FKIVRG-----GDLGNVEAALV--SRITAEELAKMPRLKFIQVVTAGLDHLPWE   67 (121)
T ss_dssp             CEEECCSCCCHHH----HHHHHTT--CEEECS-----SCCTTBCCCCB--SCCCHHHHHHCTTCCCEEBSSSCCTTSCCT
T ss_pred             CEEEEeCCCCHHH----HHHhhhc--ceEeec-----ccccccceeee--eccCHHHHhcCCCceEEEecccCcCCCCHH
Confidence            7899998876443    3445443  222221     23567888 54  479999999999999999999999999999


Q ss_pred             HHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCC
Q 044056           96 ALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFG  166 (189)
Q Consensus        96 ~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG  166 (189)
                      .+ +++|.|+|++|+   |+.+||||+++++|++.|+             +||+|+|+||+++|+|+++||
T Consensus        68 ~~-~~~i~v~n~~g~---~~~~vae~~~~~il~~~r~-------------l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2          68 SI-PPHVTVAGNAGS---NGYGNERVWRQMVMEAVRN-------------LITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             TS-CTTSCEECCCSS---SSSSCHHHHHHHHHHHHHH-------------HHHHHTTSCCSCBCCGGGTC-
T ss_pred             Hh-ccCeEEEECCCC---ChHHHHHHHHHHHHHhcCC-------------EEEEcCCHHHHHHHHHHHhcC
Confidence            87 569999999999   9999999999999999984             799999999999999999998

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=3.9e-26  Score=166.45  Aligned_cols=113  Identities=16%  Similarity=0.134  Sum_probs=96.6

Q ss_pred             CcceEEEeCCCCCCchhHHHHHhhcccCceeeeCch--hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCCCCC
Q 044056           15 SITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFL--SMHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRFRVGLE   90 (189)
Q Consensus        15 ~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~aG~d   90 (189)
                      +|||||++++..+...    +.|+...++++.....  ++.+.++++|+ ++ ...++++++++++|+||+|++.|+|+|
T Consensus         1 sMpkvli~~~~~~~~~----~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d   76 (130)
T d1ygya2           1 SLPVVLIADKLAPSTV----AALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD   76 (130)
T ss_dssp             CCCEEEECSSCCGGGG----TTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred             CCCEEEEECCCCHHHH----HHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeeccccc
Confidence            5899999998866543    4565544555544332  77888999998 54 456899999999999999999999999


Q ss_pred             cCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 044056           91 GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI  134 (189)
Q Consensus        91 ~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~  134 (189)
                      |||+++|+++||.|+|+||+   ++++||||+++++|++.|++.
T Consensus        77 ~IDl~~~~~~gI~V~n~p~~---~~~~VAE~~~~l~L~l~R~i~  117 (130)
T d1ygya2          77 NVDVDAATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLA  117 (130)
T ss_dssp             TBCHHHHHHTTCEEECCTTS---SCBHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHCCceEEecCCC---CcHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999999   889999999999999999987

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.90  E-value=4.8e-24  Score=155.37  Aligned_cols=113  Identities=10%  Similarity=0.155  Sum_probs=92.3

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCch----hHHhhcCCCeE-Ee-cCCCCCHHHHhcCC--CCeEEEEcCCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFL----SMHSLYASYGT-SE-QMIASDSNVITRAN--PMNLIIRFRVG   88 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~adv-i~-~~~~~~~~~l~~~p--~Lk~I~~~~aG   88 (189)
                      |||++++... ...+++.++.+.+ ++++...+.    +..+.++++|+ ++ +..++++++|+++|  +||+|++.|+|
T Consensus         1 MKIl~~~~~~-~e~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG   78 (131)
T d1dxya2           1 MKIIAYGARV-DEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (131)
T ss_dssp             CEEEECSCCT-TTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEecCc-CcHHHHHHHHHHc-CeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccc
Confidence            7899987653 4445555555443 455544322    66778899998 44 56789999999865  89999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI  134 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~  134 (189)
                      +||||+++++++||+|+|+||+   ++++||||+++++|++.|++.
T Consensus        79 ~d~ID~~~a~~~gI~V~n~P~~---~~~aVAE~~~~~~l~l~R~l~  121 (131)
T d1dxya2          79 TDNIDMTAMKQYGIRLSNVPAY---TETAVHNMVYFSLQHLVDFLT  121 (131)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccceEEEEeCCCC---CchhHHHHHHHHHHHHHcchH
Confidence            9999999999999999999999   789999999999999999976

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=4.4e-23  Score=150.40  Aligned_cols=113  Identities=16%  Similarity=-0.001  Sum_probs=90.3

Q ss_pred             CCcceEEEeCCCCCCchhHHHHHhhcccCceeeeC----ch-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcC
Q 044056           14 KSITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCF----FL-SMHSLYASYGT-SE-QMIASDSNVITRANPMNLIIRFR   86 (189)
Q Consensus        14 ~~~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~   86 (189)
                      .++||||++++..+...    +.|+......+...    ++ ++.+.++++|+ ++ ...++++++|+++|+||+|+++|
T Consensus         2 k~kmKILv~d~i~~~a~----~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~g   77 (132)
T d1sc6a2           2 KDKIKFLLVEGVHQKAL----ESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA   77 (132)
T ss_dssp             CSSCCEEECSCCCHHHH----HHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECS
T ss_pred             CCCCEEEEECCCCHHHH----HHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEec
Confidence            46799999999865543    44544333333222    23 77889999999 55 45689999999999999999999


Q ss_pred             CCCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcC
Q 044056           87 VGLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKH  133 (189)
Q Consensus        87 aG~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~  133 (189)
                      +|+||||+++|+++||+|+|+||+   ++.+||||+++||++..|++
T Consensus        78 vG~D~IDl~aa~~~gI~V~ntp~~---~~~svAe~~~lml~~~~~~~  121 (132)
T d1sc6a2          78 IGTNQVDLDAAAKRGIPVFNAPFS---STQEAQENIGLEVAGKLIKY  121 (132)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCTTT---CSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHhCCCEEEECCCC---chhHHHHHHHHHHHHHhhHH
Confidence            999999999999999999999999   88999999887777666554

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.86  E-value=4.4e-22  Score=144.52  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=86.6

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeCc----h-hHHhhcCCCeE-Ee-cCCCCCHHHHhcCC-CCeEEEEcCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFF----L-SMHSLYASYGT-SE-QMIASDSNVITRAN-PMNLIIRFRV   87 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~-~~~~~~~~adv-i~-~~~~~~~~~l~~~p-~Lk~I~~~~a   87 (189)
                      ++|||++.+.++..    .+.+++..++.+...+    . ++.+.++++|+ ++ +..++++++++++| +||+|+++|+
T Consensus         1 K~kVlit~~~~~~~----~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gv   76 (129)
T d1gdha2           1 KKKILITWPLPEAA----MARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (129)
T ss_dssp             CCEEEESSCCCHHH----HHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CCEEEEeCCCCHHH----HHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeeccc
Confidence            58999999875543    3445444455444322    2 67888999998 54 56799999999997 7999999999


Q ss_pred             CCCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHH---HHHHHHhc
Q 044056           88 GLEGVDIDALTNCAIKAARILGDVSGNAASCAELSIY---LMLGLLRK  132 (189)
Q Consensus        88 G~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~---liL~~~R~  132 (189)
                      |+||||+++++++||+|+|+||+   ++++|||++++   +++++.|.
T Consensus        77 G~d~ID~~~a~~~gI~V~ntpg~---~~~aVAE~A~~~~~l~~~l~~~  121 (129)
T d1gdha2          77 GFDHIDLDACKARGIKVGNAPHG---ATQAREDMAHQANDLIDALFGG  121 (129)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---BHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCccccHHHHHhCCCEEEECCCC---CchHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999   89999996554   55555544

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.83  E-value=2.5e-21  Score=141.00  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=88.7

Q ss_pred             cceEEEeCCCCCCchhHHHHHhhcccCceeeeCc-h-hHH-hhcCCCeE-Ee-cCCCCCHHHHhcCCCCeEEEEcCCCCC
Q 044056           16 ITLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFF-L-SMH-SLYASYGT-SE-QMIASDSNVITRANPMNLIIRFRVGLE   90 (189)
Q Consensus        16 ~~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~-~~~~~adv-i~-~~~~~~~~~l~~~p~Lk~I~~~~aG~d   90 (189)
                      ||+|++.+......   ....|+...++.+.... . ++. +.+.++|+ ++ ...++++++|+++|+||+|++.|+|+|
T Consensus         1 mP~v~~ld~~d~~~---e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d   77 (133)
T d1mx3a2           1 MPLVALLDGRDCTV---EMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   77 (133)
T ss_dssp             CCEEEESSCSCCTT---THHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCEEEEecCCcchh---hHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcc
Confidence            68899988753222   14566666665554432 2 443 34456776 44 568999999999999999999999999


Q ss_pred             cCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 044056           91 GVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI  134 (189)
Q Consensus        91 ~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~  134 (189)
                      |||+++++++||.|+|+||+   ++ ++|||+++++|++.|+++
T Consensus        78 ~iD~~~~~~~gI~v~n~p~~---~~-~vAE~a~~lil~~~R~i~  117 (133)
T d1mx3a2          78 NIDIKSAGDLGIAVCNVPAA---SV-YSEQASIEMREEAAREIR  117 (133)
T ss_dssp             TBCHHHHHHTTCEEECCCST---TH-CCHHHHHHHHHHHHHHHH
T ss_pred             cEeeeeheeCCEEEEcCCCC---Cc-hhHHHHHHHHHHHHhhHH
Confidence            99999999999999999998   65 479999999999999987

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.83  E-value=9.2e-21  Score=138.30  Aligned_cols=111  Identities=7%  Similarity=-0.012  Sum_probs=93.2

Q ss_pred             ceEEEeCCCCCCchhHHHHHhhcccCceeeeCch----hHHhhcCCCeE-Ee-cCCCCCHHHHhcCC--CCeEEEEcCCC
Q 044056           17 TLVLFRGPHFPASHNYAKGYLQNYLSIKGLCFFL----SMHSLYASYGT-SE-QMIASDSNVITRAN--PMNLIIRFRVG   88 (189)
Q Consensus        17 ~~ilv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~adv-i~-~~~~~~~~~l~~~p--~Lk~I~~~~aG   88 (189)
                      .||++.... ++..+++.++++.++++++...+.    ++.+.++++|+ ++ +..++++++++++|  +||+|++.|+|
T Consensus         1 ~KI~~f~~~-~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG   79 (134)
T d1j4aa2           1 TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   79 (134)
T ss_dssp             CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CeEEEEecc-cccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCC
Confidence            488988665 456677788888878888876543    66788899998 54 56889999999764  79999999999


Q ss_pred             CCcCChhHHhhCCeEEEecCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 044056           89 LEGVDIDALTNCAIKAARILGDVSGNAASCAELSIYLMLGLLRKHI  134 (189)
Q Consensus        89 ~d~id~~~~~~~gI~v~n~~g~~~~~a~~vAE~~l~liL~~~R~~~  134 (189)
                      +||||++++.++||+|+|+|+++      +|||++++||++.|++.
T Consensus        80 ~d~ID~~aa~~~gI~V~N~P~~s------vae~a~~~ml~l~r~~~  119 (134)
T d1j4aa2          80 VDNIDMAKAKELGFQITNVPVYS------YTTHAVRNMVVKAFDNN  119 (134)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCSC------CBHHHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHhCCeEEEECCCCc------HHHHHHHHHHHHHHHHh
Confidence            99999999999999999999872      69999999999999764

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.79  E-value=1.7e-19  Score=136.60  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=82.0

Q ss_pred             HHHHhhcccCceeeeC-c----h-hHHhhcCCCeE-Eec---CCCCCHHHHhcCCCCeEEEEcCCCCCcCChhHHhhCCe
Q 044056           33 AKGYLQNYLSIKGLCF-F----L-SMHSLYASYGT-SEQ---MIASDSNVITRANPMNLIIRFRVGLEGVDIDALTNCAI  102 (189)
Q Consensus        33 ~~~~l~~~~~~~~~~~-~----~-~~~~~~~~adv-i~~---~~~~~~~~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI  102 (189)
                      ++++|+.. +.++... +    . ++.+.+.+||+ +..   ...++++.|+++|+||+|++.|+|+||||+++++++||
T Consensus        59 lr~~Le~~-GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI  137 (186)
T d2naca2          59 LRKYLESN-GHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNV  137 (186)
T ss_dssp             CHHHHHHT-TCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHHHHC-CCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCC
Confidence            46777654 3344332 1    2 67889999999 553   46799999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCchhHHHHH--------HHHHHHHHhcCC
Q 044056          103 KAARILGDVSGNAASCAELS--------IYLMLGLLRKHI  134 (189)
Q Consensus       103 ~v~n~~g~~~~~a~~vAE~~--------l~liL~~~R~~~  134 (189)
                      .|+|+||+   |+.+||||+        +.+++...|++.
T Consensus       138 ~V~n~pg~---n~~SVAEha~~~~~~~~i~~il~~~r~~~  174 (186)
T d2naca2         138 TVAEVTYC---NSTTLTAQARYAAGTREILECFFEGRPIR  174 (186)
T ss_dssp             EEEECTTT---THCSHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEEECCCc---CcHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            99999999   999999999        778888888865

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.75  E-value=8.1e-19  Score=135.23  Aligned_cols=64  Identities=22%  Similarity=0.399  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHHHHhcCC---------------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056          116 ASCAELSIYLMLGLLRKHI---------------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~---------------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      ++||||+++++|++.|+++                     ...+.+|+||||||||+|+||+++|++|++|||+|++|||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5799999999999999998                     1357899999999999999999999999999999999999


Q ss_pred             CCCCc
Q 044056          175 SWASH  179 (189)
Q Consensus       175 ~~~~~  179 (189)
                      +....
T Consensus        81 ~~~~~   85 (193)
T d1mx3a1          81 YLSDG   85 (193)
T ss_dssp             TSCTT
T ss_pred             ccccc
Confidence            87654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.74  E-value=7.9e-19  Score=135.90  Aligned_cols=64  Identities=33%  Similarity=0.302  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHHHHHhcCC---------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          116 ASCAELSIYLMLGLLRKHI---------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~---------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ++||||+++++|++.|+++               ...+++|.||||||||+|+||+++|++|++|||+|++|||+....
T Consensus         3 ~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   81 (199)
T d1dxya1           3 AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence            6899999999999999987               245789999999999999999999999999999999999986653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.74  E-value=7.4e-19  Score=135.87  Aligned_cols=64  Identities=22%  Similarity=0.284  Sum_probs=58.6

Q ss_pred             hhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          116 ASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ++||||+++++|++.|+++              ...+++|+||||||||+|+||+++|+++++|||+|++||++.++.
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~   79 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE   79 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccc
Confidence            5799999999999999987              345789999999999999999999999999999999999987653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.73  E-value=2e-18  Score=131.79  Aligned_cols=68  Identities=24%  Similarity=0.333  Sum_probs=60.1

Q ss_pred             chhHHHHHHHHHHHHHhcCC-------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCccc
Q 044056          115 AASCAELSIYLMLGLLRKHI-------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQ  181 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~-------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~  181 (189)
                      |++||||+++++|++.|+++             .....++.||||||+|+|+||+++|+++++|||+|++|||++++...
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~   80 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPW   80 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeeccccccccccccccccce
Confidence            58899999999999999998             12345799999999999999999999999999999999999876544


Q ss_pred             c
Q 044056          182 V  182 (189)
Q Consensus       182 ~  182 (189)
                      .
T Consensus        81 ~   81 (181)
T d1qp8a1          81 R   81 (181)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=2.4e-18  Score=131.56  Aligned_cols=66  Identities=32%  Similarity=0.451  Sum_probs=60.4

Q ss_pred             CchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          114 NAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       114 ~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      |+.+||||+++++|++.|+++              ...+.++.|||+||+|+|+||+++|+++++|||+|++|||+..+.
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            568999999999999999998              245789999999999999999999999999999999999987654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=5e-18  Score=130.15  Aligned_cols=66  Identities=29%  Similarity=0.261  Sum_probs=58.8

Q ss_pred             CchhHHHHHHHHHHHHHhcCC--------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          114 NAASCAELSIYLMLGLLRKHI--------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       114 ~a~~vAE~~l~liL~~~R~~~--------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      |+++||||+++++|++.|+++              ...+.++.+++|||+|+|+||+++|+++++|||+|++||++.+..
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP   80 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence            579999999999999999987              235678999999999999999999999999999999999986544

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.68  E-value=2.5e-17  Score=126.57  Aligned_cols=64  Identities=39%  Similarity=0.476  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHHHHhcCC-----------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          116 ASCAELSIYLMLGLLRKHI-----------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~-----------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+||||+++++|++.|+++                 ...+.+++|||+||||+|+||+++|+++++|||+|++||++...
T Consensus         3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1           3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccc
Confidence            6899999999999999997                 23568999999999999999999999999999999999998664


Q ss_pred             c
Q 044056          179 H  179 (189)
Q Consensus       179 ~  179 (189)
                      .
T Consensus        83 ~   83 (191)
T d1gdha1          83 S   83 (191)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.64  E-value=8.9e-17  Score=123.07  Aligned_cols=63  Identities=29%  Similarity=0.410  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHhcCC----------------CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          117 SCAELSIYLMLGLLRKHI----------------VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       117 ~vAE~~l~liL~~~R~~~----------------~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +||||+++++|++.|++.                ...+.++.|++|||+|+|+||+++|+++++|||+|++|||+..+.
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE   80 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence            699999999999999997                135779999999999999999999999999999999999976543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.4e-09  Score=80.45  Aligned_cols=40  Identities=30%  Similarity=0.585  Sum_probs=37.5

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ....|.|||++|+|||.||+.+|+++++|||+|++|++.|
T Consensus        18 t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          18 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4567999999999999999999999999999999999876

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=2.2e-07  Score=61.92  Aligned_cols=41  Identities=22%  Similarity=0.256  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      +++||+|.|+|+|..|+++|+.|..+|++|++||.+..+..
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~   42 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG   42 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchh
Confidence            68899999999999999999999999999999998766543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.02  E-value=2e-06  Score=58.97  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=38.0

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ..+|+||+|+|||.|.+|.+-|+.|..+|++|+.+++...++
T Consensus         7 ~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~   48 (113)
T d1pjqa1           7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQ   48 (113)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHH
T ss_pred             EEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChH
Confidence            347999999999999999999999999999999999876543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.92  E-value=3e-06  Score=61.96  Aligned_cols=40  Identities=25%  Similarity=0.461  Sum_probs=36.5

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ...-+.||++.|+|||.+|+-+|++++++|++|+.+...|
T Consensus        17 t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          17 TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             HCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             hCceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            3467899999999999999999999999999999998764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.89  E-value=1.6e-05  Score=60.02  Aligned_cols=57  Identities=23%  Similarity=0.243  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          117 SCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       117 ~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ++|-=++..+-+..++   ....+|.||||.|-|||++|+.+|+.|..+|++|+++|...
T Consensus         4 ~Ta~Gv~~~~~~~~~~---~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1           4 TTAVGVFEAMKATVAH---RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             HHHHHHHHHHHHHHHH---TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             chHHHHHHHHHHHHHH---hCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            3444455555555554   12237999999999999999999999999999999998753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=7.2e-06  Score=58.67  Aligned_cols=41  Identities=24%  Similarity=0.267  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          140 TLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       140 ~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      ...=++|+||| +|.+|+.+|+.|+.-|.+|.+||+......
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~   47 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA   47 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence            34457999999 999999999999999999999999865543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=2.2e-05  Score=50.39  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=33.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      |||||+|-|..|+-++.-++.+|.+|+.+|+.....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            799999999999999999999999999999976544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=9.1e-05  Score=50.53  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .....+|||+|-|..|+-+|.-++.+|++++++|+++..
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            456678999999999999999999999999999998764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.32  E-value=0.00018  Score=55.12  Aligned_cols=59  Identities=22%  Similarity=0.249  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+++-=++..+.+..+..  ....+|.|+||.|-|+|++|+.+|+.|...|++|++.|.+.
T Consensus        14 ~aTg~GV~~~~~~~~~~~--~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~   72 (230)
T d1leha1          14 PVTAYGVYRGMKAAAKEA--FGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK   72 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cchHHHHHHHHHHHHHHh--cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccH
Confidence            455555666666655531  13567999999999999999999999999999999998753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.22  E-value=0.00031  Score=54.22  Aligned_cols=57  Identities=28%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      .++++-=++..+-..++.    ...+|.|+||.|-|+|++|+.+|+.|...|++|++.+-+
T Consensus         7 ~~ATg~Gv~~~~~~~~~~----~~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1           7 EYATGFGVAVATREMAKK----LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             GGHHHHHHHHHHHHHHHH----HHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             cchhhHHHHHHHHHHHHH----cCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            356666666666666664    345799999999999999999999999999999987743

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.19  E-value=7.4e-05  Score=51.87  Aligned_cols=35  Identities=23%  Similarity=0.412  Sum_probs=31.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      |++.|+|+|++|+.+|+.|...|.+|+.+|..+..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~   35 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEK   35 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHH
Confidence            67899999999999999999999999999987544

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.14  E-value=0.0003  Score=55.68  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcC
Q 044056          116 ASCAELSIYLMLGLLRKHI----VPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKR  174 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~----~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r  174 (189)
                      ++++-=++..+-.++++..    .....+|.||||.|=|+|++|+.+|+.|...|++|++++-
T Consensus         5 eATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1           5 SATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hHhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            5666666677766666532    1234689999999999999999999999999999998763

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.0002  Score=51.68  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .|.+|.|+|.|.+|...++.++.+|++|++.|++..+.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~   64 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR   64 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHH
Confidence            58999999999999999999999999999999987643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.98  E-value=0.00033  Score=50.53  Aligned_cols=56  Identities=30%  Similarity=0.396  Sum_probs=43.6

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      +.+|+-.++-+....        ...+.++++.|||.|.+|+.+++.|...|. ++..++|+...
T Consensus         4 ~vSv~~aAv~la~~~--------~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~k   60 (159)
T d1gpja2           4 AVSIGSAAVELAERE--------LGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYER   60 (159)
T ss_dssp             CCSHHHHHHHHHHHH--------HSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHH
T ss_pred             cccHHHHHHHHHHHH--------hCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHH
Confidence            356666666543331        236899999999999999999999999998 59999998543

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.92  E-value=0.0014  Score=50.27  Aligned_cols=58  Identities=33%  Similarity=0.464  Sum_probs=46.2

Q ss_pred             CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHH-ccCCCEEEEEcC
Q 044056          114 NAASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIAAKR  174 (189)
Q Consensus       114 ~a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l-~afG~~V~~~~r  174 (189)
                      -.++++-=++..+....+..   ...+|.|+||.|-|+|++|..+|+.| +.+|++|++.+-
T Consensus         6 R~eATg~Gv~~~~~~~~~~~---g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1           6 RIEATARGASYTIREAAKVL---GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             TTTHHHHHHHHHHHHHHHHT---TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CcchhhHHHHHHHHHHHHHh---CCCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccc
Confidence            34677777777777777752   22459999999999999999999988 479999998754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.91  E-value=0.00035  Score=48.37  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+|.|+|+|++|+.+|+.|...|.+|+..|..+..
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~   35 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDI   35 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhh
Confidence            36899999999999999999999999999987643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.82  E-value=0.00061  Score=48.85  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|.+|.|+|.|.||...++.++.+|++|++++++..
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            478999999999999999999999999999998754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.77  E-value=0.0011  Score=51.37  Aligned_cols=55  Identities=31%  Similarity=0.553  Sum_probs=45.5

Q ss_pred             chhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEc
Q 044056          115 AASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       115 a~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~  173 (189)
                      .++++-=++..+-.++++    ...+|.|+||.|=|+|++|+.+|+.|...|++|++.+
T Consensus        12 ~eATG~Gv~~~~~~~~~~----~~~~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvvavs   66 (255)
T d1bgva1          12 PEATGYGSVYYVEAVMKH----ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLS   66 (255)
T ss_dssp             TTHHHHHHHHHHHHHHHH----TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CccchHHHHHHHHHHHHh----CCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence            356666666666666665    4568999999999999999999999999999999764

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.77  E-value=0.0012  Score=50.41  Aligned_cols=55  Identities=22%  Similarity=0.204  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHH-ccCCCEEEEEcC
Q 044056          116 ASCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRL-RPFGVKIIAAKR  174 (189)
Q Consensus       116 ~~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l-~afG~~V~~~~r  174 (189)
                      ++++-=++..+-..++.    .+.++.|+||.|=|+|++|+.+|+.| +.+|++|++.+-
T Consensus         8 eATg~Gv~~~~~~~~~~----~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1           8 EATGRGVKVCAGLAMDV----LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             HHHHHHHHHHHHHHHHH----TTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             chhhHHHHHHHHHHHHH----cCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeec
Confidence            45555555555555554    35689999999999999999999999 579999998763

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00057  Score=49.14  Aligned_cols=38  Identities=29%  Similarity=0.348  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .|.+|.|+|.|.||...++.++++|++++..+++.++.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~   67 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR   67 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH
Confidence            48999999999999999999999999999999876543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.70  E-value=0.00096  Score=49.02  Aligned_cols=42  Identities=21%  Similarity=0.368  Sum_probs=38.5

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.+|+||++.|.| -|.||+++|+.+...|++|+..+|+..+
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~   59 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK   59 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence            57899999999999 7999999999999999999999998543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00067  Score=47.98  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=36.0

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+|.||++.|||-|.+|.+-|+.+..+|++|..+++...
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~   47 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3579999999999999999999999999999999976533

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.0009  Score=48.62  Aligned_cols=37  Identities=32%  Similarity=0.387  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++..
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccc
Confidence            58999999999999999999999998 79999986543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.58  E-value=0.0012  Score=47.17  Aligned_cols=37  Identities=30%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|.+|.|+|.|.||...++.++.+|++|++.++++.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhH
Confidence            3889999999999999999999999999999987543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.57  E-value=0.0018  Score=43.97  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=33.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      -++|.|||-|.||-++|..++.+|.+|..+.|....
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            389999999999999999999999999999987654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.0018  Score=44.17  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=33.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      |++.|||.|.||-++|..+..+|++|..+.+.....+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~   60 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA   60 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch
Confidence            7999999999999999999999999999988765543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.34  E-value=0.0024  Score=42.97  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=32.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +++.|||-|.||-++|..+..+|.+|..+.+...-.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            799999999999999999999999999998876543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0028  Score=42.70  Aligned_cols=37  Identities=30%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      |++.|||-|.||-++|..++.+|.+|..+.+.....+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~   58 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP   58 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh
Confidence            7899999999999999999999999999998765543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.24  E-value=0.0042  Score=41.76  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=34.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ..+++|.|||-|.||-++|..++.+|.+|..+.+.+...
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            347999999999999999999999999999999876543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0025  Score=45.67  Aligned_cols=37  Identities=24%  Similarity=0.446  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++..+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~r   63 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR   63 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHH
Confidence            47899999999999999999999999 79999987543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0034  Score=42.86  Aligned_cols=36  Identities=31%  Similarity=0.261  Sum_probs=33.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      |++.|||-|.||-++|..++.+|.+|..+.|...-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            789999999999999999999999999999976543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0037  Score=44.89  Aligned_cols=41  Identities=12%  Similarity=0.156  Sum_probs=37.3

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +.++.||+|.|+|.|..+++++--|...|++|..++|+..+
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~k   53 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSR   53 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHH
Confidence            56788999999999999999999999999999999998644

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.11  E-value=0.002  Score=43.98  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=33.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      +++.|||-|-||-++|..++.+|++|....|.....+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~   62 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP   62 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc
Confidence            7899999999999999999999999999988765543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.08  E-value=0.004  Score=42.16  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=32.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      +++.|||-|.||-++|..++.+|++|....+...-.+
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~   59 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP   59 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC
Confidence            8899999999999999999999999998887755433

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.98  E-value=0.0025  Score=43.45  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~  175 (189)
                      +++.|||-|.||-++|..++.||.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999888764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.91  E-value=0.0038  Score=45.09  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++.++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh
Confidence            48899999999999999999999998 69999987543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.90  E-value=0.0037  Score=45.21  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      -.|.+|.|+|.|.||...++.++++|+ +|+..|++..+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            357999999999999999999999999 57788876543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.84  E-value=0.0061  Score=41.44  Aligned_cols=40  Identities=23%  Similarity=0.196  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      ..+|+|.|||-|-||-++|..+..+|.+|....+.....+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~   67 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG   67 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc
Confidence            3478999999999999999999999999999988765443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.83  E-value=0.0041  Score=44.01  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|++|.|.|.|.||...++.++.+|.+|++.+++..+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r   63 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEK   63 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHH
Confidence            4899999999999999999999999999999876543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.82  E-value=0.0046  Score=42.35  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +++.|||-|-||-++|..++.+|.+|....+...-.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            789999999999999999999999999998876543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.78  E-value=0.0046  Score=44.75  Aligned_cols=39  Identities=21%  Similarity=0.369  Sum_probs=34.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      --.|.||.|+|.|.+|...++.++.+|+ +|++.|++.++
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            3458999999999999999999999995 79999987654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.71  E-value=0.0061  Score=47.20  Aligned_cols=40  Identities=25%  Similarity=0.452  Sum_probs=36.4

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..+|+||++.|-| .|.||+++|+.|..-|++|+..+|+..
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            3589999999998 789999999999999999999998754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0087  Score=43.32  Aligned_cols=42  Identities=21%  Similarity=0.217  Sum_probs=37.0

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~  179 (189)
                      +.++++|+|.|+|.|..|++++..|...|+ ++..++|+....
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~   55 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFF   55 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHH
Confidence            568899999999999999999999998898 588899986543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.61  E-value=0.0077  Score=40.88  Aligned_cols=38  Identities=32%  Similarity=0.350  Sum_probs=34.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      ++++.|||-|-||-++|..++..|.+|..+.+.....+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~   67 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS   67 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc
Confidence            58999999999999999999999999999998765543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.45  E-value=0.0053  Score=44.26  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      --.|.+|.|+|.|.+|...++.++++|+ +|++.|++.++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            3458999999999999999999999997 79999987654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.42  E-value=0.012  Score=42.37  Aligned_cols=40  Identities=25%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..+++||+|.|+|.|..+++++..|...| +|..++|+..+
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~k   52 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEK   52 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhH
Confidence            44689999999999999999999999888 99999998554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.36  E-value=0.0045  Score=44.43  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=33.7

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .|++|.|.| .|.+|+...+.++.+|++|++.++++.+.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~   65 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL   65 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccccc
Confidence            589999999 59999999999999999999999875443

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.34  E-value=0.009  Score=39.91  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      +++.|+|-|.||-++|..++.+|.+|..+.+...-.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~   58 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP   58 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccc
Confidence            7999999999999999999999999999988765543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.30  E-value=0.011  Score=40.01  Aligned_cols=36  Identities=31%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ++++.|+|-|.||-++|..|..+|.+|..+.+.+.-
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            478999999999999999999999999999987543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.16  E-value=0.011  Score=43.39  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|.||.|+|.|.||...++.++.+|+ +|++.|++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            48899999999999999999999998 7989988753

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.12  E-value=0.017  Score=41.25  Aligned_cols=39  Identities=13%  Similarity=0.186  Sum_probs=33.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~  176 (189)
                      ...+...+|+|||.|++|..+|-.+...|.  ++..||...
T Consensus        15 ~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          15 EATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            456678899999999999999999987666  899999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.08  E-value=0.011  Score=41.91  Aligned_cols=37  Identities=16%  Similarity=0.057  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      +.++|+|||.|.+|+.+|-.+...+. ++..+|.....
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~   43 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGM   43 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecccc
Confidence            46899999999999999988775554 89999977644

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.04  E-value=0.021  Score=40.65  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~  176 (189)
                      ...+...+|+|||.|++|..+|-.+...|.  ++..+|...
T Consensus        14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          14 EDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            345666789999999999999999976665  799999764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.023  Score=41.24  Aligned_cols=42  Identities=14%  Similarity=0.119  Sum_probs=37.5

Q ss_pred             CCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .......|+|.|||-|..|-+.|..|...|.+|..|++....
T Consensus        37 ~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          37 ILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             CCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cCCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            345677899999999999999999999999999999987654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.99  E-value=0.011  Score=41.64  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC--EEEEEcCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV--KIIAAKRSWA  177 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~  177 (189)
                      -.+++|+|||.|.+|..+|-.+...|.  ++..+|+...
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            457899999999999999999975554  7999997643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.95  E-value=0.01  Score=41.69  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCC--CEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFG--VKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~  177 (189)
                      ..++|+|||.|.+|..+|-.|...|  -+|..+|+...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            4689999999999999999987655  58999997653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.93  E-value=0.0098  Score=43.53  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=36.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcccc
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHSQV  182 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~  182 (189)
                      +.--+|.|+|.|..|..-++.++++|++|..+|.+.....+.
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l   68 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV   68 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHH
Confidence            445689999999999999999999999999999887665443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.015  Score=41.46  Aligned_cols=36  Identities=25%  Similarity=0.573  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|.+|.|.|. |.||....+.++.+|++|++.+++.+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~   64 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE   64 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccc
Confidence            5889999995 99999999999999999999987653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.86  E-value=0.022  Score=39.07  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCCcc
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  180 (189)
                      .++++.|||-|-||-++|..+...|.+|..+.+.....+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~   72 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE   72 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc
Confidence            368999999999999999999999999999998766543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.84  E-value=0.014  Score=41.65  Aligned_cols=38  Identities=21%  Similarity=0.376  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      -.|.||.|+|.|.+|...+..++.+|. +|++.+++.++
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            358999999999999999999999995 89999987654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.78  E-value=0.011  Score=45.44  Aligned_cols=41  Identities=29%  Similarity=0.391  Sum_probs=35.8

Q ss_pred             CCCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ....|+||++.|-| -+.||+++|+.|..-|++|+..+++..
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            34579999999998 789999999999999999998877643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.77  E-value=0.0079  Score=39.33  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHH-HHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIG-VELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG-~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      +.|++=++|.|.+| .++|+.|+..|.+|.++|....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            46899999999999 6669999999999999998754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0095  Score=45.68  Aligned_cols=41  Identities=34%  Similarity=0.547  Sum_probs=36.1

Q ss_pred             CCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..-|+||++.|.|-++ ||+++|+.|...|++|+..+|+...
T Consensus         9 ~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_           9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3458999999998765 9999999999999999999998654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.0082  Score=45.43  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      ..|++++|.|+|+|.+|..+|..|...|. ++..+|.-.=+
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVS   66 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccc
Confidence            45899999999999999999999999999 68888865433

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.55  E-value=0.012  Score=42.21  Aligned_cols=36  Identities=19%  Similarity=0.196  Sum_probs=30.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCEE-EEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVKI-IAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~V-~~~~r~~  176 (189)
                      -.|.+|.|+|.|.||...++.++++|+++ +..|++.
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            34899999999999999999999999965 5556654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.52  E-value=0.025  Score=37.17  Aligned_cols=42  Identities=19%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ....+..||+|.|||-|+-|..+|.-+....-++++..++..
T Consensus        25 ~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          25 REPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             CCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             cchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            455678999999999999999999999999888766655543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.34  E-value=0.027  Score=37.91  Aligned_cols=44  Identities=16%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             CEEEEEcC----CHHHHHHHHHHccCCCEEEEEcCCCCCcccccccCC
Q 044056          144 KTVFISGF----GNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS  187 (189)
Q Consensus       144 ktvGIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~  187 (189)
                      |+|.|||.    |+.|..+.+.|+.+|++|+.++|...+..+..|..|
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~s   49 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRS   49 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSS
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCcccccc
Confidence            78999994    688999999999999999999999888888777654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.0087  Score=37.60  Aligned_cols=40  Identities=18%  Similarity=0.374  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCCCccc
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWASHSQ  181 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~~~  181 (189)
                      .+.+|.|.|- |.+|....+.++.+|++|++..+++++.+.
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~   71 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEY   71 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHH
Confidence            5788999876 999999999999999999999988765543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.15  E-value=0.017  Score=41.19  Aligned_cols=37  Identities=16%  Similarity=0.277  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .+|+|.|+|.|..+++++.-|+..|+ +|..++|+.+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence            57999999999999999999999998 69999998653

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.14  E-value=0.022  Score=40.84  Aligned_cols=41  Identities=20%  Similarity=0.176  Sum_probs=35.9

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...+.||+|.|+|.|..+++++..|..-+.+|..++|+.+.
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~   53 (171)
T d1p77a1          13 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSK   53 (171)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHH
Confidence            45788999999999999999999988777899999998533

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.09  E-value=0.029  Score=36.04  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCHHHH-HHHHHHccCCCEEEEEcCCCCC
Q 044056          143 GKTVFISGFGNIGV-ELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       143 gktvGIvG~G~IG~-~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      +++|=++|-|.+|- .+|+.|+..|++|.++|+...+
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~   37 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE   37 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh
Confidence            36788999999998 7899999999999999987543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.08  E-value=0.021  Score=40.60  Aligned_cols=36  Identities=25%  Similarity=0.270  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~   68 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE   68 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH
Confidence            37999999999999999999999997 6777887653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.83  E-value=0.033  Score=37.01  Aligned_cols=38  Identities=24%  Similarity=0.159  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHc---cCCCEEEEEcCCCCCcc
Q 044056          143 GKTVFISGFGNIGVELAKRLR---PFGVKIIAAKRSWASHS  180 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~---afG~~V~~~~r~~~~~~  180 (189)
                      .+++.|||-|.||-++|..+.   ..|.+|..+.+...-.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            379999999999999998654   55999998888765443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.81  E-value=0.042  Score=39.48  Aligned_cols=40  Identities=23%  Similarity=0.189  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ..+.-.+|.|+|.|..|..-++.++++|++|..+|.+...
T Consensus        28 ~gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~   67 (168)
T d1pjca1          28 PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVER   67 (168)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHH
Confidence            3466789999999999999999999999999999987544

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.60  E-value=0.016  Score=42.10  Aligned_cols=37  Identities=35%  Similarity=0.463  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -|++|+|+|||||.-|++=|.-|+--|++|+.=-|..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~g   49 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCC
Confidence            4679999999999999999999998899977655544

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.48  E-value=0.036  Score=37.93  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=26.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHccCCCEEE-EEcCC
Q 044056          144 KTVFISGF-GNIGVELAKRLRPFGVKII-AAKRS  175 (189)
Q Consensus       144 ktvGIvG~-G~IG~~vA~~l~afG~~V~-~~~r~  175 (189)
                      .+|||+|+ |+.|+++++.+..-|+++. .+|+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~   34 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN   34 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC
Confidence            36999996 9999999999999999865 45554

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.44  E-value=0.065  Score=39.60  Aligned_cols=41  Identities=24%  Similarity=0.217  Sum_probs=36.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...-.+|+|.|||-|..|-..|..|+..|++|..+++...-
T Consensus        44 ~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          44 RQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             CCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            34568999999999999999999999999999999886543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.38  E-value=0.049  Score=37.78  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=40.1

Q ss_pred             CCEEEEEcC----CHHHHHHHHHHccCCCEEEEEcCCCCCcccccccCC
Q 044056          143 GKTVFISGF----GNIGVELAKRLRPFGVKIIAAKRSWASHSQVCCQSS  187 (189)
Q Consensus       143 gktvGIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~  187 (189)
                      -|+|.|||.    ++.|..+++.|+.+|++|+.++|...+..+..|..|
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~s   67 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPS   67 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCccccc
Confidence            589999996    579999999999999999999999888888877765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.27  E-value=0.031  Score=39.45  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      .|.||.|+|.|.+|...++.++++|+ +|+..+++..+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence            48999999999999999999999997 57777776544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.17  E-value=0.023  Score=38.46  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=24.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          144 KTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      |.+-|+|+|++|+.+++.|++.+..|  .+..+.
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~i~v--i~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSEVFV--LAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGGEEE--EESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHcCCCCEE--EEcchH
Confidence            45889999999999999999776544  454433

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.96  E-value=0.037  Score=41.69  Aligned_cols=36  Identities=28%  Similarity=0.218  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .-|+|.|||-|-.|-..|..|+..|.+|..+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999998653

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.92  E-value=0.098  Score=35.60  Aligned_cols=48  Identities=19%  Similarity=0.172  Sum_probs=41.6

Q ss_pred             CCCCCEEEEEcC----CHHHHHHHHHHccCC-CEEEEEcCCCCCcccccccCC
Q 044056          140 TLLGKTVFISGF----GNIGVELAKRLRPFG-VKIIAAKRSWASHSQVCCQSS  187 (189)
Q Consensus       140 ~l~gktvGIvG~----G~IG~~vA~~l~afG-~~V~~~~r~~~~~~~~~~~~~  187 (189)
                      -++=++|.|||.    |+.|..+.+.|+..| -+|+.++|..++..+..|+.|
T Consensus         5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~s   57 (129)
T d2csua1           5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKS   57 (129)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSS
T ss_pred             hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecc
Confidence            355689999996    899999999999765 699999999998888888876

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.71  E-value=0.049  Score=39.23  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             CCCEEEEE--cCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFIS--GFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIv--G~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .|+++.|+  |.|.+|+...+.++.+|++|++.-++.+.
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~   66 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN   66 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccc
Confidence            37889998  78999999999999999999998776544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.55  E-value=0.035  Score=39.43  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|.+|.|.| .|.+|...++.++.+|++|++..++.+
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~   61 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA   61 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccc
Confidence            478999988 599999999999999999999887643

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.52  E-value=0.19  Score=35.90  Aligned_cols=40  Identities=28%  Similarity=0.411  Sum_probs=35.5

Q ss_pred             CCCCCCCCCEEEEEcCCHH-HHHHHHHHccCCCEEEEEcCC
Q 044056          136 PTGETLLGKTVFISGFGNI-GVELAKRLRPFGVKIIAAKRS  175 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~I-G~~vA~~l~afG~~V~~~~r~  175 (189)
                      ..+.++.||++.|||-++| |+-+|.+|..-|++|.-.+..
T Consensus        22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          22 PEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            4567999999999999986 999999999999999877654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.037  Score=39.25  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             CCCEEEEE-cCCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          142 LGKTVFIS-GFGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       142 ~gktvGIv-G~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .|++|.|. |-|.+|+.+.+.++.+|++|++.+++.++.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~   66 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA   66 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHH
Confidence            47899999 555599999999999999999999886543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.28  E-value=0.11  Score=36.92  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=35.9

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +....|.+|.|-| .|.+|....++++.+|++|++..++.++.
T Consensus        19 g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~   61 (167)
T d1tt7a2          19 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA   61 (167)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH
T ss_pred             cCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH
Confidence            4445678899998 69999999999999999999999886654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.20  E-value=0.1  Score=36.07  Aligned_cols=40  Identities=20%  Similarity=0.214  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEE--cCCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          139 ETLLGKTVFIS--GFGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       139 ~~l~gktvGIv--G~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      ...-++.+-|+  |-|.||-++|..|..+|.+|....+....
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            44557888887  88999999999999999999999987544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.01  E-value=0.06  Score=36.49  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=25.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHc-cCCCEEEEE-cCCC
Q 044056          144 KTVFISGFGNIGVELAKRLR-PFGVKIIAA-KRSW  176 (189)
Q Consensus       144 ktvGIvG~G~IG~~vA~~l~-afG~~V~~~-~r~~  176 (189)
                      .+|.|+|+|+.|+++++.+. .-|++++++ |-.+
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            37999999999999999775 557886654 4433

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.18  Score=36.00  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=37.7

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+.++.||++.|||-+. +|+-+|.+|..-|++|..++.+.+.
T Consensus        33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~   75 (170)
T d1a4ia1          33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH   75 (170)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS
T ss_pred             hCcccccceEEEEecCCccchHHHHHHHhccCceEEEeccccc
Confidence            56789999999999988 8999999999999999999876554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.75  E-value=0.07  Score=38.03  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      .|++|.|.|. |.+|+..++.++..|++|++..++.+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~   65 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE   65 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH
Confidence            5899999988 77999999999999999999987754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.72  E-value=0.087  Score=37.04  Aligned_cols=38  Identities=24%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSWAS  178 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  178 (189)
                      -.|.||.|+|.|.+|...+..++.+|. +|++.|++..+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            458999999999999999999998777 68889887653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.68  E-value=0.078  Score=37.18  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHccCCC-EEEEEcCCCC
Q 044056          142 LGKTVFISGF-GNIGVELAKRLRPFGV-KIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~-G~IG~~vA~~l~afG~-~V~~~~r~~~  177 (189)
                      .|.+|.|+|. |.+|...++.+++.|. +|+..+++.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchh
Confidence            4789999995 9999999999999995 8999987753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.25  E-value=0.18  Score=37.66  Aligned_cols=56  Identities=25%  Similarity=0.357  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          117 SCAELSIYLMLGLLRKHIVPTGETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       117 ~vAE~~l~liL~~~R~~~~~~~~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      -+|=-+++.+|+..|-    .+..|.+.++.++|.|.-|-.+|+.+...+. +++.+|+..
T Consensus         4 GTaaV~LAgll~a~~~----~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1           4 GTAVVVSAAFLNALKL----TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             HHHHHHHHHHHHHHHH----HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hHHHHHHHHHHHHHHH----hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            3566788999999985    6788999999999999999999999987777 599999873

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.81  E-value=0.1  Score=34.49  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHccCC---CEEEEEcCCCCCc
Q 044056          143 GKTVFISGFGNIGVELAKRLRPFG---VKIIAAKRSWASH  179 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l~afG---~~V~~~~r~~~~~  179 (189)
                      .+++.|||-|.||-++|..+++||   .+|..+.+...-.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            378999999999999998777665   4688887765443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.21  Score=35.55  Aligned_cols=41  Identities=17%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             CCCCCCCCEEEEEcCCH-HHHHHHHHHccCCCEEEEEcCCCC
Q 044056          137 TGETLLGKTVFISGFGN-IGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ...++.||++.|||-+. +|+-+|.+|..-|++|...+.+.+
T Consensus        31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~   72 (166)
T d1b0aa1          31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK   72 (166)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS
T ss_pred             cCcccccceEEEEeccccccHHHHHHHHHhhccccccccccc
Confidence            46789999999999999 899999999999999998876544

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.062  Score=44.09  Aligned_cols=36  Identities=31%  Similarity=0.343  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      |++++|.|||+|.+|.++++.|...|. ++..+|...
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            568899999999999999999998888 688888743

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.13  Score=34.97  Aligned_cols=38  Identities=32%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHH----ccCCCEEEEEcCCCCCcc
Q 044056          143 GKTVFISGFGNIGVELAKRL----RPFGVKIIAAKRSWASHS  180 (189)
Q Consensus       143 gktvGIvG~G~IG~~vA~~l----~afG~~V~~~~r~~~~~~  180 (189)
                      .+++.|||-|-||-++|..+    +.+|.+|....+.....+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~   78 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG   78 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc
Confidence            58999999999999998776    578999999988665443

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.43  E-value=0.17  Score=37.69  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=27.0

Q ss_pred             CCC-CEEEEEcCCHHHHHHHHHHcc------CCCEEEEE
Q 044056          141 LLG-KTVFISGFGNIGVELAKRLRP------FGVKIIAA  172 (189)
Q Consensus       141 l~g-ktvGIvG~G~IG~~vA~~l~a------fG~~V~~~  172 (189)
                      +.| |+|+|||||.-|++=|.-|+-      -|.+|+.-
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VG   79 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIG   79 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEE
Confidence            567 999999999999999999986      66776543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.078  Score=38.04  Aligned_cols=41  Identities=17%  Similarity=0.337  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          139 ETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       139 ~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      ....+.+|.|.| .|.+|....+++|.+|++|++..+++++.
T Consensus        28 ~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~   69 (177)
T d1o89a2          28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH   69 (177)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH
T ss_pred             CCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHH
Confidence            344556777775 49999999999999999999999876654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=90.17  E-value=0.13  Score=38.03  Aligned_cols=35  Identities=11%  Similarity=0.063  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCCHHHHH-HHHHHccC-CCEEE-EEcCCC
Q 044056          142 LGKTVFISGFGNIGVE-LAKRLRPF-GVKII-AAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~-vA~~l~af-G~~V~-~~~r~~  176 (189)
                      +--+|||||+|.+|+. ++..++.. +++|. .+|+++
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~   69 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNA   69 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCH
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCH
Confidence            4568999999999974 66777655 78877 567754

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.62  E-value=0.29  Score=31.99  Aligned_cols=37  Identities=16%  Similarity=0.061  Sum_probs=32.1

Q ss_pred             CCEEEEEcC----------CHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          143 GKTVFISGF----------GNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       143 gktvGIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      .|+|||+|+          ..-.-.+.+.|+..|++|.+|||...+.
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~   61 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL   61 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCC
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChh
Confidence            469999998          4677889999999999999999997654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.15  E-value=0.39  Score=32.09  Aligned_cols=39  Identities=23%  Similarity=0.125  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSWA  177 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  177 (189)
                      ..-+||+|.|||-|+.+-.-|..|..+.-+|...-|+.+
T Consensus        23 ~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          23 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            345799999999999999999999999999999988764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.51  E-value=0.35  Score=34.39  Aligned_cols=42  Identities=26%  Similarity=0.296  Sum_probs=36.6

Q ss_pred             CCCCCCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCCc
Q 044056          138 GETLLGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWASH  179 (189)
Q Consensus       138 ~~~l~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~  179 (189)
                      +....|.+|.|.| -|.+|....+.++.+|++|++..++.++.
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~   69 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH   69 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH
Confidence            4555689999999 69999999999999999999998876654

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.40  E-value=0.22  Score=33.80  Aligned_cols=37  Identities=24%  Similarity=0.137  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcC----------CHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          140 TLLGKTVFISGF----------GNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       140 ~l~gktvGIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      .+.+++|||+|+          +.=...+++.|...|++|.+|||..
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v   56 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNV   56 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCC
Confidence            467899999998          5778899999999999999999853

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.15  E-value=0.3  Score=37.88  Aligned_cols=37  Identities=27%  Similarity=0.299  Sum_probs=32.8

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCEEEEEcCCCCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVKIIAAKRSWAS  178 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  178 (189)
                      .+++|.|.| .|-||+.+++.|..-|.+|++.|+...+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   51 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCcc
Confidence            688999997 9999999999999999999999876544

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=0.36  Score=35.21  Aligned_cols=40  Identities=30%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHccCC--CEEEEEcCCCCCcc
Q 044056          141 LLGKTVFISG-FGNIGVELAKRLRPFG--VKIIAAKRSWASHS  180 (189)
Q Consensus       141 l~gktvGIvG-~G~IG~~vA~~l~afG--~~V~~~~r~~~~~~  180 (189)
                      ..+|+|.|.| .|-||+.+.+.|..-|  -+|+..+|++....
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~   54 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD   54 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhc
Confidence            3578999996 8999999999996555  48999998765543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.44  E-value=0.31  Score=34.99  Aligned_cols=39  Identities=15%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          138 GETLLGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ..+++||+|.|||.|.-|-.+|.-+..-+.++...-+++
T Consensus        27 ~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          27 PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            457899999999999999999999987778776665554

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.06  E-value=0.2  Score=34.47  Aligned_cols=29  Identities=34%  Similarity=0.456  Sum_probs=26.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHccCCCE
Q 044056          140 TLLGKTVFISGFGNIGVELAKRLRPFGVK  168 (189)
Q Consensus       140 ~l~gktvGIvG~G~IG~~vA~~l~afG~~  168 (189)
                      .-.||+|-|||-|.+|-.+|+.+..+|++
T Consensus        26 ~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          26 APVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             cccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            34589999999999999999999999986

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.01  E-value=0.35  Score=33.01  Aligned_cols=31  Identities=13%  Similarity=0.254  Sum_probs=24.5

Q ss_pred             EEEEEc-CCHHHHHHHHHHc-cCCCEEE-EEcCC
Q 044056          145 TVFISG-FGNIGVELAKRLR-PFGVKII-AAKRS  175 (189)
Q Consensus       145 tvGIvG-~G~IG~~vA~~l~-afG~~V~-~~~r~  175 (189)
                      +|+|+| .|+.|+++++.+. .-++++. ++|+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            689999 6999999999865 6778844 56654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.17  E-value=0.88  Score=33.00  Aligned_cols=28  Identities=25%  Similarity=0.446  Sum_probs=24.3

Q ss_pred             CCCCCCCCCEEEEEcCCHHHHHHHHHHc
Q 044056          136 PTGETLLGKTVFISGFGNIGVELAKRLR  163 (189)
Q Consensus       136 ~~~~~l~gktvGIvG~G~IG~~vA~~l~  163 (189)
                      .....+.|++|.|||-|+.+--+|+.|.
T Consensus        32 ~~~~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          32 QVSPDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             TCCCCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             ccCccccCceEEEECCCchhHhhhhhhc
Confidence            3456788999999999999999999875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.11  E-value=0.87  Score=33.28  Aligned_cols=50  Identities=22%  Similarity=0.207  Sum_probs=37.2

Q ss_pred             HHHhcCC--CCCCCCCCCCEEEEEcCCHHHHHHHHHHcc--------------------CCC-EEEEEcCCCC
Q 044056          128 GLLRKHI--VPTGETLLGKTVFISGFGNIGVELAKRLRP--------------------FGV-KIIAAKRSWA  177 (189)
Q Consensus       128 ~~~R~~~--~~~~~~l~gktvGIvG~G~IG~~vA~~l~a--------------------fG~-~V~~~~r~~~  177 (189)
                      .++...+  ......+.|++|.|||-|+.+--+|+.|..                    .|. +|..+.|+..
T Consensus        22 ~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          22 GWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             HHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             HHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            3444444  344567889999999999999999998865                    576 4777776653

>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Chondrus crispus [TaxId: 2769]

Probab=85.88  E-value=0.21  Score=35.62  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             CCCCCCCEEEEEcCCH----------HHHHHHHHHccCCCEEEEEc
Q 044056          138 GETLLGKTVFISGFGN----------IGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       138 ~~~l~gktvGIvG~G~----------IG~~vA~~l~afG~~V~~~~  173 (189)
                      ...++||+++|+|+|.          .++.+.++++..|+++++..
T Consensus        79 ~~~l~gk~~avFGlGD~~~y~~~F~~a~~~l~~~l~~~GA~~IG~~  124 (173)
T d2fcra_          79 EVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFS  124 (173)
T ss_dssp             GCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCB
T ss_pred             CCCCCCCeEEEEEecCCCcchhhHHHHHHHHHHHHHhCCCEEeccc
Confidence            3578999999999883          68999999999999999764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.48  E-value=0.53  Score=36.06  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=29.6

Q ss_pred             CCEEEEE-cCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          143 GKTVFIS-GFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       143 gktvGIv-G~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      -|++.|. |.|-||+.+++.|...|.+|++.|+..
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            3688887 579999999999999999999999744

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.25  E-value=0.52  Score=32.61  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056          141 LLGKTVFISGFGNIGVELAKRLRPFGVK-IIAAKRS  175 (189)
Q Consensus       141 l~gktvGIvG~G~IG~~vA~~l~afG~~-V~~~~r~  175 (189)
                      -.+++|.|||=|.+|-..|..+..+|++ |..+-|.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            3467899999999999999999999986 6555444

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=84.10  E-value=0.46  Score=32.27  Aligned_cols=43  Identities=14%  Similarity=0.165  Sum_probs=34.8

Q ss_pred             CCEEEEEcC----CHHHHHHHHHHccCCCEEEEEcCCCC--Cccccccc
Q 044056          143 GKTVFISGF----GNIGVELAKRLRPFGVKIIAAKRSWA--SHSQVCCQ  185 (189)
Q Consensus       143 gktvGIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~--~~~~~~~~  185 (189)
                      -|+|.|||.    ++.|..+.+.|+.+|+++..+.+.++  +..+..|.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~   61 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAV   61 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECB
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecc
Confidence            489999997    78999999999999999999987653  34444443

>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.25  E-value=0.57  Score=33.39  Aligned_cols=37  Identities=32%  Similarity=0.399  Sum_probs=32.1

Q ss_pred             CCCCCCCCEEEEEcCCH----------HHHHHHHHHccCCCEEEEEc
Q 044056          137 TGETLLGKTVFISGFGN----------IGVELAKRLRPFGVKIIAAK  173 (189)
Q Consensus       137 ~~~~l~gktvGIvG~G~----------IG~~vA~~l~afG~~V~~~~  173 (189)
                      ....++|++++|+|+|.          .++.+.++++..|+++++.-
T Consensus        82 ~~~~l~g~~~avfGlGDs~~~~~~Fc~a~~~l~~~l~~~GA~~iG~~  128 (179)
T d1yoba1          82 EGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSW  128 (179)
T ss_dssp             TTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCB
T ss_pred             cccccCCcEEEEEEecCCcccchhHHHHHHHHHHHHHhCCCeEeecc
Confidence            34579999999999995          58999999999999999754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.30  E-value=0.28  Score=34.88  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=28.3

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHccCCCE-EEEEcCC
Q 044056          142 LGKTVFISG-FGNIGVELAKRLRPFGVK-IIAAKRS  175 (189)
Q Consensus       142 ~gktvGIvG-~G~IG~~vA~~l~afG~~-V~~~~r~  175 (189)
                      .++||.|.| .|.+|+...+.++.+|++ |++.+.+
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~   65 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT   65 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccch
Confidence            358999999 599999999999999996 5555554

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.99  E-value=0.36  Score=40.37  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHccCCC-EEEEEcCCC
Q 044056          139 ETLLGKTVFISGFGNIGVELAKRLRPFGV-KIIAAKRSW  176 (189)
Q Consensus       139 ~~l~gktvGIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  176 (189)
                      ..|.+++|.|||+|.+|.++|+-|.--|. ++..+|...
T Consensus        21 ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          21 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            45778999999999999999999998887 688888643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.93  E-value=0.77  Score=34.21  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHc-cCCCEEEEEcCCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLR-PFGVKIIAAKRSWA  177 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~  177 (189)
                      .+.-|.|||.|.-|...|..|. ..|.+|..+++.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            3566999999999999999975 57999999998754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=81.47  E-value=0.62  Score=34.46  Aligned_cols=35  Identities=20%  Similarity=0.107  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHccCCCEEEEEcCCC
Q 044056          142 LGKTVFISGFGNIGVELAKRLRPFGVKIIAAKRSW  176 (189)
Q Consensus       142 ~gktvGIvG~G~IG~~vA~~l~afG~~V~~~~r~~  176 (189)
                      ++.-+-|||-|..|...|..+..+|.+|....+..
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            44569999999999999999999999999998754