Citrus Sinensis ID: 044070

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900---
MAVSEEVCSTAKSRSSPSSSSAPASPPRNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL
cccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEEccccccEEEEEEccEEEEEEEcccccEEEEEEEEEEcccEEEEEEccccccccccccccccEEEEEEcccccEEEEEEEcccccEEEEEEEEcccccccccccccEEEEcccccEEEEEEcccEEEEEEEEcccccccccccccccccccccccEEEEEEEccccccEEEEEEEcccccccccccccEEEEEEEcccccccEEEEEEEEcccccEEEEEEEccccccccEEEEcccccccEEEEEEccEEEEccccccccccEEccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccEEEEccccccccccccEEEEEcccccccccEEEEEEccccEEEEEEEEcccccEEEEEEEccccccccccEEEcccEEEEEEcccccEEEEEccccEEEEEEcccccccccEEEEEcccccccEEEEEEEccccccEEEEEEccccEEEEEcccccccccEEEEEEEEccccccEEEEEEccccEEEEEEcccEEEEcccccccccccEEEEEEcccccEEEEEcccEEEEcccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccEEEEEEcccccEEEEEEccEEccccccccccccccccccccccccEEEEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEcccccEEEEEccccEEEEEEccEEEEEEcccccccEEcccccccccccEEEEEccEEEc
ccccHHHHccccccccccccccccccccHHHHHHHHcccccHHHEEEEEcccccccEEEEEEcccEEEEEEEccccEEEEEEEEcHHEHHHEHccccccccccccccccccccEEEEEccccEEEEEEEccccccEEEEEEEcccccccEEEccccEEEEcccccEEEEEEEEcccEEEEEEcccHcccHHcccEcccccHcccccEEEEEEEEEEccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccccEEEEcccccccEEEEEcccEEEEcccccccccEEEEEccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEccccEEEEEEEEEEEEEEcccccccEEEEEEcccEEEEEEEEccccEEEEEEEEccccccHHHHEEcccccEEccccccccEEEccccccEEEEEccccccccEEEEEEEcccccccEEEEEEcccccccHHHHEccccEHHHHHcccccccccEEEEEEEccccccccEEEEEEcccEEEEEEcccEEEEcccccccccccEEEEEEcccccEEEEccccEEEEccccccccccccccccccccccccccEEEEEEEcccEEEEEEEccEEEEEEEccccccccEEEEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEccccccHHHHHcccccccccEEEEccccccccccccccEEEEEEEccccEEEEEEccccccccccccEEEccccccccccccccccccccccccccccccEEEEEEEEEHcccccEEEEEEEEccccEEEEEccccEEEEEcccEEEEEcccccccccccccccHHccccEEEEEccEEEc
MAVSEEVcstaksrsspssssapaspprnihYLAKCVLKGSVVLQVahghlrsptsndvvfgKETSIELVIIGEDGIVQSVCEQAVFgtikdlavvpwnkkfnaqnsqvMGKDLLVVISDSGKLSFLAFCNEMHRFFPvaqvhlsnpgnsrhqLGRMLAVDSSGCLIAVSAYEDRLGLFSLsmssgsdiidkkicypsesevdtsasriaqknsisgtiwsmcfistdprqpskehnpILAIILNRRGALLNELLLVGWNIREHAISVLScffeagplahcvvevprsygFAFVFRIGDALlmdlrdphnpscvyrtslnflppaleeqnfvdescrvhdvddeglFNVAACALLelrdydpmcidsdsgnakepskhvcswswepetdkipkmvfcvdtGEFFMIEiafgsdghkvhlseclykgppckalLWVEGRFLSAFVEMGdgmvlkeengrlvytspiqniapildmsvvdyhdekRDQMFaccgvapegslRIIRSGISLEKLLrtapiyqgitgtwtvrmkvsdpyhSFLVLSFVEETRVLRVglnftdvtdsvgfrpdvCTLACGLVADGLLVQIHQNAVRLCMPtmvahsggiplsypvctswfpehvsisLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELscisipqkhperrkssspislvsnssvpalpagvIIGYTFVIgthrpsvevlsfvpkeglRVLASGSIVltntmgtaisgcipqdvRLVLADQFYVLAGLRNgmllrfewppdsnipssvapihspisatfrntenirsgiaatssfeskdelpINLQLIATrrigitpvflvplsdsldadmialsdrpwllQTARHSLAytsisfqpsthatpvcsvecpkgILFVAENSLNL
MAVSEEVCstaksrsspssssapaspPRNIHYLAKCVLKGSVVLQVAHGhlrsptsndvvfgKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSesevdtsasriaqknsisgtiWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCswswepetdkiPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYtspiqniapiLDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNftdvtdsvgfRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIaatssfeskdeLPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL
MAVSEEVCSTAKsrsspssssapaspprNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRlglfslsmssgsDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKssspislvsnssVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL
*****************************IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICY*****************SISGTIWSMCFIST*********NPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCID***********HVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCI************************PALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP***************************************ELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVA******
******************************HYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVP************MGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGS***************DTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVS*********MRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLA*************************LADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTEN***********************IATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL
**************************PRNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPS********SRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSD************SWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIP*****************NSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL
***************************RNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKH*******************ALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAVSEEVCSTAKSRSSPSSSSAPASPPRNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query903 2.2.26 [Sep-21-2011]
Q6E7D1 1095 DNA damage-binding protei N/A no 0.384 0.316 0.243 5e-23
Q6QNU4 1090 DNA damage-binding protei N/A no 0.384 0.318 0.243 6e-23
Q9M0V3 1088 DNA damage-binding protei no no 0.384 0.318 0.234 5e-22
O49552 1088 DNA damage-binding protei no no 0.384 0.318 0.232 2e-20
Q15393 1217 Splicing factor 3B subuni yes no 0.400 0.297 0.216 5e-20
A0JN52 1217 Splicing factor 3B subuni yes no 0.400 0.297 0.216 5e-20
Q921M3 1217 Splicing factor 3B subuni yes no 0.400 0.297 0.216 5e-20
Q1LVE8 1217 Splicing factor 3B subuni yes no 0.405 0.300 0.220 1e-19
Q5RBI5 1217 Splicing factor 3B subuni yes no 0.400 0.297 0.216 1e-19
A1A4K3 1140 DNA damage-binding protei no no 0.405 0.321 0.229 4e-19
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1 Back     alignment and function desciption
 Score =  110 bits (275), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 179/439 (40%), Gaps = 92/439 (20%)

Query: 467 NIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWT 526
           N+ PI+D  VVD   + + Q+  C G   +GSLRI+R+GI + +  + +   QGI G W+
Sbjct: 352 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE--QASVELQGIKGMWS 409

Query: 527 VRMKVSDPYHSFLVLSFVEETRVLRVGL-NFTDVTDSVGFRPDVCTLACGLVADGLLVQI 585
           +R    DPY +FLV+SF+ ETRVL + L +  + T+  GF   V TL C       LVQ+
Sbjct: 410 LRSATDDPYDTFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQV 469

Query: 586 HQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEHVSISLGAVAHNMIIVSTSNPCFLFIL 644
             N+VRL   T          S  +   WF P   S+++       ++++T     ++  
Sbjct: 470 TSNSVRLVSST----------SRDLKNEWFAPVGYSVNVATANATQVLLATGGGHLVY-- 517

Query: 645 GVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVII 704
               L +    + E+++ +L  ++SC+ I           +PI    N S  A      +
Sbjct: 518 ----LEIGDGVLNEVKYAKLDYDISCLDI-----------NPIGENPNYSNIA-----AV 557

Query: 705 GYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYV 764
           G    I     S+  L+ + KE L     G I+  + +  +  G              Y+
Sbjct: 558 GMWTDISVRIYSLPDLNLITKEQL----GGEIIPRSVLMCSFEGI------------SYL 601

Query: 765 LAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPIN 824
           L  L +G LL F                                + + S+ E  D   ++
Sbjct: 602 LCALGDGHLLNF--------------------------------VLSMSTGELTDRKKVS 629

Query: 825 LQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPV 884
           L        G  P+ L   S      + A SDRP ++ ++   L Y++++ +  +H  P 
Sbjct: 630 L--------GTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPF 681

Query: 885 CSVECPKGILFVAENSLNL 903
                P  +    E  L +
Sbjct: 682 NVAAFPDSLAIAKEGELTI 700
Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5.
Solanum cheesmanii (taxid: 142759)
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1 Back     alignment and function description
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2 SV=2 Back     alignment and function description
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4 Back     alignment and function description
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1 Back     alignment and function description
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1 Back     alignment and function description
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1 Back     alignment and function description
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1 Back     alignment and function description
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query903
297739782 1363 unnamed protein product [Vitis vinifera] 0.965 0.639 0.700 0.0
225441567 1387 PREDICTED: pre-mRNA-splicing factor rse1 0.981 0.638 0.703 0.0
147860990 1298 hypothetical protein VITISV_022228 [Viti 0.988 0.687 0.662 0.0
449437538 1376 PREDICTED: pre-mRNA-splicing factor RSE1 0.988 0.648 0.686 0.0
449526686997 PREDICTED: uncharacterized protein LOC10 0.988 0.895 0.686 0.0
358348136 1370 Pre-mRNA-splicing factor rse1 [Medicago 0.980 0.645 0.668 0.0
42564075 1379 Cleavage and polyadenylation specificity 0.941 0.616 0.657 0.0
297829750 1384 predicted protein [Arabidopsis lyrata su 0.941 0.614 0.661 0.0
358348118822 DNA damage-binding protein, partial [Med 0.908 0.997 0.655 0.0
6671952 1331 hypothetical protein [Arabidopsis thalia 0.889 0.603 0.633 0.0
>gi|297739782|emb|CBI29964.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1297 bits (3357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/908 (70%), Positives = 746/908 (82%), Gaps = 36/908 (3%)

Query: 1   MAVSEEVCSTAKSRSSPSSSSAPASPPRNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVV 60
           MAV+EE CS+ KSRS+ ++ S         HYLAKCVLKGSVVL V HG +RSP+ +D+V
Sbjct: 1   MAVAEEECSSTKSRSASNNDS---------HYLAKCVLKGSVVLHVVHGRIRSPSFSDIV 51

Query: 61  FGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISD 120
           FGKETS+ELVIIGEDGIVQSVCEQAVFGTIKDLAV+ WN++F+ QN Q+ G+DLLVV+SD
Sbjct: 52  FGKETSLELVIIGEDGIVQSVCEQAVFGTIKDLAVLRWNERFHHQNLQMQGRDLLVVVSD 111

Query: 121 SGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFS 180
           SGKLSFL FCNEMHRFFPV  V LS+PGN R+QLG+MLA+DS+GC IA SAYEDRL +FS
Sbjct: 112 SGKLSFLRFCNEMHRFFPVTHVQLSSPGNLRNQLGQMLAIDSNGCFIATSAYEDRLAMFS 171

Query: 181 LSMSSGSDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPIL 240
           +SM++ SDIIDK+I YP E E D+  +R   + SISGTIWSMCFIS D  QPS  +NP+L
Sbjct: 172 ISMATDSDIIDKRIFYPPEIEGDSGVARSVHRTSISGTIWSMCFISKDLNQPSGGYNPVL 231

Query: 241 AIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDA 300
           AIILNRRGA+L EL+L+ W I E+A+ V+S + EAG +AH +VEVP SYGFAF+FRIGDA
Sbjct: 232 AIILNRRGAVLTELVLLEWIIIENAVRVISQYAEAGHVAHSIVEVPHSYGFAFLFRIGDA 291

Query: 301 LLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDY 360
           LLMDLRD HNP CVY+TSLN LP ++E QNF +ESCRVHD D++G+FNVAA ALLEL+DY
Sbjct: 292 LLMDLRDAHNPCCVYKTSLNILPTSVE-QNFAEESCRVHDGDEDGIFNVAASALLELKDY 350

Query: 361 -----DPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGH 415
                DPM +D DSG  K  SKHVC+ SWEP  +K  +M+FCVDTGE FMIEI+F SDG 
Sbjct: 351 VAKGDDPMNVDGDSGMVKSTSKHVCALSWEPGNEKNSRMIFCVDTGELFMIEISFDSDGP 410

Query: 416 KVHLSECLYKGPPCKALLWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMS 475
           KV+LS+CLY+G  CKALLW  G FL+A VEMGDGMVLK E GRLVY SPIQNIAPILDMS
Sbjct: 411 KVNLSDCLYRGLSCKALLWFAGGFLAALVEMGDGMVLKLEQGRLVYRSPIQNIAPILDMS 470

Query: 476 VVDYHDEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPY 535
           VVD HDE+ DQMFACCGV PEGSLRIIRSGIS+EKLLRTAPIYQGITGTWTV+MKV D Y
Sbjct: 471 VVDCHDEEHDQMFACCGVTPEGSLRIIRSGISVEKLLRTAPIYQGITGTWTVKMKVIDSY 530

Query: 536 HSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMP 595
           HSFLVLSFVEETRVL VGL+FTDVTDSVGF+PDV TLACG+V DGLLVQIH+N V+LC+P
Sbjct: 531 HSFLVLSFVEETRVLSVGLSFTDVTDSVGFQPDVSTLACGVVDDGLLVQIHKNGVKLCLP 590

Query: 596 TMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYE 655
           T VAH  GIPL+ P+CTSWFPE++SISLGAV +N+I+V+TS+PCFLFILGVRS+S   YE
Sbjct: 591 TTVAHPEGIPLASPICTSWFPENISISLGAVGYNLIVVATSSPCFLFILGVRSVSAYQYE 650

Query: 656 IYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRP 715
           IYEMQH+RLQ+E+SCISIP KH +++ S+   +LV NSS  AL  GV IG  FVIGTH+P
Sbjct: 651 IYEMQHVRLQNEVSCISIPHKHFDKKPSTFLSNLVDNSSAAALLIGVNIGRIFVIGTHKP 710

Query: 716 SVEVLSFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLR 775
           SVE+LSF+P EGLR+LASG+I LTNT+GTA+SGC+PQD RLVL D+FYVL+GLRNGMLLR
Sbjct: 711 SVEILSFLPDEGLRILASGAISLTNTLGTAVSGCVPQDARLVLVDRFYVLSGLRNGMLLR 770

Query: 776 FEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGI 835
           FE P       + + + S   ++   + NI S              P+NLQLIA RRIGI
Sbjct: 771 FELP-------AASMVFSSELSSHSPSTNINS--------------PVNLQLIAIRRIGI 809

Query: 836 TPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILF 895
           TPVFLVPLSDSL+AD+IALSDRPWLLQ+ARHSL+YTSISFQPSTH TPVCS+ECP GILF
Sbjct: 810 TPVFLVPLSDSLEADIIALSDRPWLLQSARHSLSYTSISFQPSTHVTPVCSMECPMGILF 869

Query: 896 VAENSLNL 903
           VAENSL+L
Sbjct: 870 VAENSLHL 877

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441567|ref|XP_002276675.1| PREDICTED: pre-mRNA-splicing factor rse1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147860990|emb|CAN78747.1| hypothetical protein VITISV_022228 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449437538|ref|XP_004136549.1| PREDICTED: pre-mRNA-splicing factor RSE1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526686|ref|XP_004170344.1| PREDICTED: uncharacterized protein LOC101227016, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|358348136|ref|XP_003638105.1| Pre-mRNA-splicing factor rse1 [Medicago truncatula] gi|355504040|gb|AES85243.1| Pre-mRNA-splicing factor rse1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|42564075|ref|NP_187802.2| Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana] gi|29824376|gb|AAP04148.1| unknown protein [Arabidopsis thaliana] gi|110739103|dbj|BAF01468.1| hypothetical protein [Arabidopsis thaliana] gi|332641608|gb|AEE75129.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297829750|ref|XP_002882757.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328597|gb|EFH59016.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|358348118|ref|XP_003638096.1| DNA damage-binding protein, partial [Medicago truncatula] gi|355504031|gb|AES85234.1| DNA damage-binding protein, partial [Medicago truncatula] Back     alignment and taxonomy information
>gi|6671952|gb|AAF23212.1|AC016795_25 hypothetical protein [Arabidopsis thaliana] gi|10998135|dbj|BAB03106.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query903
TAIR|locus:2081576 1379 AT3G11960 [Arabidopsis thalian 0.943 0.617 0.645 7.2e-297
TAIR|locus:2100616 1214 SAP130a "spliceosome-associate 0.145 0.107 0.338 9.3e-28
TAIR|locus:2100646 1214 SAP130b "spliceosome-associate 0.145 0.107 0.338 9.3e-28
UNIPROTKB|A0JN52 1217 SF3B3 "Splicing factor 3B subu 0.211 0.156 0.299 9.3e-24
UNIPROTKB|E2RR33 1217 SF3B3 "Uncharacterized protein 0.211 0.156 0.299 9.3e-24
UNIPROTKB|Q15393 1217 SF3B3 "Splicing factor 3B subu 0.211 0.156 0.299 9.3e-24
MGI|MGI:1289341 1217 Sf3b3 "splicing factor 3b, sub 0.211 0.156 0.299 9.3e-24
UNIPROTKB|F1P529 1228 SF3B3 "Uncharacterized protein 0.211 0.155 0.304 1.5e-23
ZFIN|ZDB-GENE-040426-2901 1217 sf3b3 "splicing factor 3b, sub 0.211 0.156 0.294 8.3e-23
FB|FBgn0035162 1227 CG13900 [Drosophila melanogast 0.208 0.153 0.285 1.4e-20
TAIR|locus:2081576 AT3G11960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2850 (1008.3 bits), Expect = 7.2e-297, P = 7.2e-297
 Identities = 567/879 (64%), Positives = 677/879 (77%)

Query:    31 HYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTI 90
             HYLAKC+L+ SVVLQVA+G+ RSP+S D+VFGKET IELV+IGEDGIV+SVCEQ VFGTI
Sbjct:    35 HYLAKCILRPSVVLQVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFGTI 94

Query:    91 KDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNS 150
             KDLAV+P + K  + NS  MGKDLL V+SDSGKLSFL+F NEMHRF P+  V LS PGNS
Sbjct:    95 KDLAVIPQSSKLYS-NSLQMGKDLLAVLSDSGKLSFLSFSNEMHRFSPIQHVQLSTPGNS 153

Query:   151 RHQLGRMLAVDSSGCLIAVSAYEDRXXXXXXXXXXXXDIIDKKICYPSESEVDTSASRIA 210
             R QLGRML +DSSG  +AVSAY DR            DII ++I YPSE   + S+ +  
Sbjct:   154 RIQLGRMLTIDSSGLFLAVSAYHDRFALFSLSTSSMGDIIHQRISYPSEDGGNGSSIQ-- 211

Query:   211 QKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLS 270
                +ISGTIWSMCFIS D  + SKE+ PILAI++NR+G+L+NEL L  WN++E +I ++S
Sbjct:   212 ---AISGTIWSMCFISKDFNE-SKEYAPILAIVINRKGSLMNELALFRWNVKEESICLIS 267

Query:   271 CFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQN 330
              + E G LAH +VEVP S GFAF+FRIGD LLMDLRDP NP C++RTSL+F+P +L E++
Sbjct:   268 EYVETGALAHSIVEVPHSSGFAFLFRIGDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEH 327

Query:   331 FVDESCRVHDVDDEGLFNVAACALLELRDY-----DPMCIDSDSGNAKEPSKHVCSWSWE 385
             FV+ESCRV D DDEG  NV  CALLELRD+     DPM ID++S   K  SK+V SW+WE
Sbjct:   328 FVEESCRVQDGDDEGC-NVVVCALLELRDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWE 386

Query:   386 PETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEGRFLSAFVE 445
             PE +  P+M+ C+D G+FFM E+ +  DG KV+LSECLYKG PCK +LW+EG FL+ F E
Sbjct:   387 PENNHNPRMIICLDNGDFFMFELIYEDDGVKVNLSECLYKGLPCKDILWIEGGFLATFAE 446

Query:   446 MGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLRIIRSG 505
             M DG V K    +L + S IQNIAPILD SV+D  +EKRDQ+FACCGV PEGSLRIIRSG
Sbjct:   447 MADGTVFKLGTEKLHWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSG 506

Query:   506 ISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGF 565
             I++EKLL+TAP+YQGITGTWTV+MK++D YHSFLVLSFVEETRVL VGL+F DVTDSVGF
Sbjct:   507 INVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGF 566

Query:   566 RPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGA 625
             + DVCT ACGLVADGLLVQIHQ+A+RLCMPTM AHS GIP+S P  +SWFPE+VSISLGA
Sbjct:   567 QSDVCTFACGLVADGLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGA 626

Query:   626 VAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISIPQKHPERRKXXX 685
             V  N+I+VSTSNPCFL ILGV+S+S    EIYE+Q + LQ E+SCIS+PQKH  +++   
Sbjct:   627 VGQNLIVVSTSNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISVPQKHIGKKRSRD 686

Query:   686 XXXXXXXXXVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKE-GLRVLASGSIVLTNTMGT 744
                        A+P+ +  GYTF+IGTH+PSVEVLSF     G+RVLASG + LTNTMGT
Sbjct:   687 SSPDNFCKA--AIPSAMEQGYTFLIGTHKPSVEVLSFTEDGVGVRVLASGLVSLTNTMGT 744

Query:   745 AISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTEN 804
              ISGCIPQDVRLVL DQ YVL+GLRNGMLLRFEW P SN      P +      F + + 
Sbjct:   745 VISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWAPFSNSSGLNCPDY------FSHCKE 798

Query:   805 IRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTA 864
                 +        KD LP+NL LIATRRIGITPVFLVP SDSLD+D+IALSDRPWLLQTA
Sbjct:   799 EMDTVVG-----KKDNLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTA 853

Query:   865 RHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSLNL 903
             R SL+YTSISFQPSTHATPVCS ECP+GILFV+EN L+L
Sbjct:   854 RQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCLHL 892
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0008150 "biological_process" evidence=ND
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
TAIR|locus:2100616 SAP130a "spliceosome-associated protein 130 a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100646 SAP130b "spliceosome-associated protein 130 b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A0JN52 SF3B3 "Splicing factor 3B subunit 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RR33 SF3B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15393 SF3B3 "Splicing factor 3B subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1289341 Sf3b3 "splicing factor 3b, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P529 SF3B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2901 sf3b3 "splicing factor 3b, subunit 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0035162 CG13900 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025448001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1363 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query903
pfam10433513 pfam10433, MMS1_N, Mono-functional DNA-alkylating 3e-67
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term Back     alignment and domain information 
 Score =  232 bits (595), Expect = 3e-67
 Identities = 135/560 (24%), Positives = 220/560 (39%), Gaps = 102/560 (18%)

Query: 113 DLLVVISDSGKLSFLAFCNEMHRFFPVA---QVHLSNPGNSRHQLGRMLAVDSSGCLIAV 169
           D+LV+  DSG+L FL +  E  + FP     +  L +  +   Q GR +AVD SG  +AV
Sbjct: 1   DILVLSLDSGELLFLYYDEEPRQLFPEFYHSRRDLPSDVSRLEQSGRHIAVDPSGRAMAV 60

Query: 170 SAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDP 229
           SAY    G++ L   + +  +  ++     +E   S     +   + G I  MCF+    
Sbjct: 61  SAYSGFFGVYPLQRDNKTQELQSQM-----AEGPLSPIEEERFRLVDGDILDMCFLYP-- 113

Query: 230 RQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHCVVEVPRSY 289
              S++ + ++ ++L         L L  W+  E    V+S             E+P   
Sbjct: 114 --KSEDDDHVILLLLVFDEQRRLHLKLYEWSAGEGLNQVISKETRLPL--PNEFELP--- 166

Query: 290 GFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNV 349
                     +LL+ L  P +   V  TSL +    L E                     
Sbjct: 167 ----------SLLIPLPKPGSFLVVGPTSLVYYTVHLIESAE------------------ 198

Query: 350 AACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIA 409
                     +  + I SD       ++   +WS+  + D I   +   + G  + +EI 
Sbjct: 199 --------YPFLRLEIGSDKSIWTAWARPDRNWSYNEKHDDI---LLAREDGRIYYLEI- 246

Query: 410 FGSDGHKVHLS-ECLYKGPPCKALLWV----EGRFLSAFVEMGDGMVLK---EENGRLVY 461
             +DG    ++   + K     A   +    EG  L    + GDG + K    +N R V 
Sbjct: 247 -SNDGEVESITILGIGKCSVAIAFAILDKGNEGDVLFVASDTGDGGLFKISARDNPRCVQ 305

Query: 462 TSPIQNIAPILDMSVVDYHDEK-------RDQMFACCGVAPEGSLRIIRSGISLEKLLRT 514
                N APILD  VVD  + K       +D++F C GV   GSLR +R GI  E  L  
Sbjct: 306 D--FPNWAPILDFVVVDSGNSKNESQDPSQDRIFTCSGVGKRGSLRELRHGIEAEIGLVI 363

Query: 515 APIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFT----DVTDSVGFRPDVC 570
               +GI G W +    +  Y  +L++SF  ETRVL++ ++      +V +  G    V 
Sbjct: 364 EEELRGIRGLWLLPSGSNGGY--YLLVSFPFETRVLQLPVDPGEEVEEVDEDSGLDLSVQ 421

Query: 571 TLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVAHNM 630
           TLA G  +DG+++Q+ +N++RL          G         +       I+  +V    
Sbjct: 422 TLAAGNTSDGVIIQVTENSIRL-----SDLELG-------KITDEWSDEIITAASV---- 465

Query: 631 IIVSTSNPCFLFILGVRSLS 650
                +    L  +  R+L 
Sbjct: 466 -----NGSLVLVAVAGRNLV 480

MMS1 is a protein that protects against replication-dependent DNA damage in Saccharomyces cerevisiae. MMS1 belongs to the DDB1 family of cullin 4 adaptors and the two proteins are homologous. MMS1 bridges the interaction of MMS22 and Crt10 with Cul8/Rtt101. Cul8/Rtt101 is a cullin protein involved in the regulation of DNA replication subsequent to DNA damage. The N-terminal region of MMS1 and the C-terminal of MMS22 are required for the the MMS1-MMS22 interaction. The human HIV-1 virion-associated protein Vpr assembles with DDB1 through interaction with DCAF1 (chromatin assembly factor) to form an E3 ubiquitin ligase that targets cellular substrates for proteasome-mediated degradation and subsequent G2 arrest. Length = 513

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 903
KOG1897 1096 consensus Damage-specific DNA binding complex, sub 100.0
KOG1898 1205 consensus Splicing factor 3b, subunit 3 [RNA proce 100.0
KOG1896 1366 consensus mRNA cleavage and polyadenylation factor 100.0
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 100.0
COG5161 1319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 100.0
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 96.15
KOG0318603 consensus WD40 repeat stress protein/actin interac 95.42
KOG2048691 consensus WD40 repeat protein [General function pr 94.36
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 92.81
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 92.2
PF14727418 PHTB1_N: PTHB1 N-terminus 92.13
KOG1274 933 consensus WD40 repeat protein [General function pr 92.12
KOG0646476 consensus WD40 repeat protein [General function pr 92.1
KOG2110391 consensus Uncharacterized conserved protein, conta 92.09
KOG2111346 consensus Uncharacterized conserved protein, conta 91.48
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 91.01
KOG2321 703 consensus WD40 repeat protein [General function pr 90.75
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 90.4
KOG2110391 consensus Uncharacterized conserved protein, conta 90.17
KOG0647 347 consensus mRNA export protein (contains WD40 repea 89.9
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 89.51
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 88.99
KOG2055514 consensus WD40 repeat protein [General function pr 88.26
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 88.17
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 88.1
KOG0310487 consensus Conserved WD40 repeat-containing protein 88.04
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 87.78
KOG1539 910 consensus WD repeat protein [General function pred 86.95
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 86.75
KOG0316307 consensus Conserved WD40 repeat-containing protein 85.25
KOG0279315 consensus G protein beta subunit-like protein [Sig 85.02
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 84.92
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 84.75
PF14727 418 PHTB1_N: PTHB1 N-terminus 83.92
PRK11028330 6-phosphogluconolactonase; Provisional 83.88
PRK11028330 6-phosphogluconolactonase; Provisional 83.25
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 83.24
KOG1897 1096 consensus Damage-specific DNA binding complex, sub 82.92
KOG2096 420 consensus WD40 repeat protein [General function pr 82.55
KOG0279315 consensus G protein beta subunit-like protein [Sig 81.62
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 80.32
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-106  Score=922.89  Aligned_cols=684  Identities=22%  Similarity=0.351  Sum_probs=582.9

Q ss_pred             eEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCC
Q 044070           30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQV  109 (903)
Q Consensus        30 ~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~  109 (903)
                      |..|+.|+++||+|.+|+.|||+++...||+|||+|+||+|.++++| |+.+++.++||+|+.|+.||         |++
T Consensus         1 ~~~Y~vtaqkpT~V~~av~gnFts~e~~nlivAk~~~lei~~~~~~G-Lq~i~sv~ifg~I~~i~~fR---------p~g   70 (1096)
T KOG1897|consen    1 SMNYVVTAQKPTAVVTAVVGNFTSPENLNLIVAKGNRLEILLVEPNG-LQPITSVPIFGTIATIALFR---------PPG   70 (1096)
T ss_pred             CeeEEEEecCCceEeEEEeecccCccceeeeeeccceEEEEeecccc-ceeeEeeccceeEEEEEeec---------CCC
Confidence            46799999999999999999999999999999999999999999999 99999999999999999996         799


Q ss_pred             CCccEEEEEeCCCcEEEEEEeCCCcceEee-EEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCCc
Q 044070          110 MGKDLLVVISDSGKLSFLAFCNEMHRFFPV-AQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSD  188 (903)
Q Consensus       110 ~~~D~Llv~tds~~l~iL~~d~~~~~f~tv-~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~~  188 (903)
                      .++|+|+|.|+++++++|+||.+..+.++. ++....|.| |+...|+|++|||++|.|+++.||+.++|+|+.+++ . 
T Consensus        71 ~~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~~v~dr~g-r~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~-s-  147 (1096)
T KOG1897|consen   71 SDKDYLFVATDSYRYFILEWDEESIQVVTRAHGDVSDRSG-RPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDE-S-  147 (1096)
T ss_pred             CCcceEEEEECcceEEEEEEccccceEEEEeccccccccc-ccCCCceEEEECCCCcEEEEEeecCeEEEEEecccc-c-
Confidence            999999999999999999999954444444 566666777 888999999999999999999999999999998742 1 


Q ss_pred             cccccccCCCCccccCcccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEccCCceee
Q 044070          189 IIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAISV  268 (903)
Q Consensus       189 ~~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl~~~~~~v  268 (903)
                         .+.         .+..+.|+++..+.+|.||+|||+       ...|++|+||++  .+.+|+++|++|+++++ .+
T Consensus       148 ---ht~---------~s~l~~fn~rfdel~v~Di~fly~-------~s~pt~~vly~D--s~~~Hv~~yelnl~~ke-~~  205 (1096)
T KOG1897|consen  148 ---HTG---------GSLLKAFNVRFDELNVYDIKFLYG-------CSDPTLAVLYKD--SDGRHVKTYELNLRDKE-FV  205 (1096)
T ss_pred             ---ccC---------cccccccccccCcceEEEEEEEcC-------CCCCceEEEEEc--CCCcEEEEEEeccchhh-cc
Confidence               111         223467778888999999999999       889999999998  37899999999999986 44


Q ss_pred             eeeeecC-CCCcceEEeecCCCCceEEEeeCcEEEEecCCCCCCeeeeeccccCCCCcccccceeccccccccCCCcccc
Q 044070          269 LSCFFEA-GPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLF  347 (903)
Q Consensus       269 i~~~~~~-~~~~~~li~vP~~~ggvlv~~~~~il~i~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (903)
                      -..|+.+ ...+..+++||.+.||+||+|++.|+|++..             |                           
T Consensus       206 ~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~~I~Y~~~~-------------~---------------------------  245 (1096)
T KOG1897|consen  206 KGPWSNNVDNGASMLIPVPSPIGGVLVIGEEFIVYMSGD-------------N---------------------------  245 (1096)
T ss_pred             ccccccccccCCceeeecCCCCceEEEEeeeEEEEeeCC-------------c---------------------------
Confidence            4556533 3458999999999999999999999998763             1                           


Q ss_pred             eeeeeeccccccCCCCccCCCCCCCCCCCeeEEEEeeccCCCCCCeEEEEeCCCCEEEEEEEeCCCccE-EEEce-eccC
Q 044070          348 NVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHK-VHLSE-CLYK  425 (903)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~i~~~~~~~~~~~~~~~~LL~~e~G~l~~l~l~~~~~~~~-v~~~~-~~~~  425 (903)
                       +.+..|.+.+                ..++ .+|  .+++.++.+|||+|++|+||++.+.+.++.+. +.+.. .++.
T Consensus       246 -~~ai~p~~~~----------------~~t~-~~~--~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge  305 (1096)
T KOG1897|consen  246 -FVAIAPLTAE----------------QSTI-VCY--GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGE  305 (1096)
T ss_pred             -eeEecccccC----------------CceE-EEc--ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCC
Confidence             1112222111                1333 334  45666788999999999999999997766321 12333 3567


Q ss_pred             CCCcceEEEECCCeEEEEEeeCCeEEEEEeC-----CceEEeeeecccccccceEEeecCCCCCCeEEEEeeCCCCCcEE
Q 044070          426 GPPCKALLWVEGRFLSAFVEMGDGMVLKEEN-----GRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSLR  500 (903)
Q Consensus       426 ~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~-----~~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~g~~GsL~  500 (903)
                      +++|+||+||++|+||+||++|||+|+++..     ....++++++|+|||.||++.|...++++||++|||++++|+||
T Consensus       306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLR  385 (1096)
T KOG1897|consen  306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLR  385 (1096)
T ss_pred             cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEE
Confidence            9999999999999999999999999999973     24677899999999999999999988999999999999999999


Q ss_pred             EEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEeCCccccccCcCCccCCCCeEEEEeeCCC
Q 044070          501 IIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADG  580 (903)
Q Consensus       501 ~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~~~~~~e~~~~~~f~~~~~Tl~a~~~~~~  580 (903)
                      ++|+||++++++.++  ++|++++|+++..-.+++|.||++||.++|++|.+++++||..+. ||.++++||+|+.+.++
T Consensus       386 iiRngi~I~e~A~i~--l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~-gf~~~~~Tif~S~i~g~  462 (1096)
T KOG1897|consen  386 IIRNGIGIDELASID--LPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDP-GFSTDEQTIFCSTINGN  462 (1096)
T ss_pred             EEecccccceeeEee--cCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccc-cccccCceEEEEccCCc
Confidence            999999999999997  899999999997766788999999999999999999999998877 99999999999999888


Q ss_pred             eEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEecCCEEEEEEeCCcEEEEEeEEeccccceEEEEe
Q 044070          581 LLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEM  659 (903)
Q Consensus       581 ~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~  659 (903)
                      .++|||+++||+++.+.            +..+|.+ .+..|..|+++..||+||..++.++|++..    .+  .|.|+
T Consensus       463 ~lvQvTs~~iRl~ss~~------------~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~----~~--~l~e~  524 (1096)
T KOG1897|consen  463 QLVQVTSNSIRLVSSAG------------LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIE----DG--GLREV  524 (1096)
T ss_pred             eEEEEecccEEEEcchh------------hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEee----cc--ceeee
Confidence            89999999999998763            3689998 778899999999999999887877777554    22  48889


Q ss_pred             eeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCe-EEEEEccCCCCeeEEEeeeeee
Q 044070          660 QHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPS-VEVLSFVPKEGLRVLASGSIVL  738 (903)
Q Consensus       660 ~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~-v~i~sl~~~~~l~~~s~~~l~~  738 (903)
                      .+..+++||+||++.+.++++.|                      +.+++||.|+.. +.+..+|+.. +...+      
T Consensus       525 ~~~~~e~evaCLDisp~~d~~~~----------------------s~~~aVG~Ws~~~~~l~~~pd~~-~~~~~------  575 (1096)
T KOG1897|consen  525 SHKEFEYEVACLDISPLGDAPNK----------------------SRLLAVGLWSDISMILTFLPDLI-LITHE------  575 (1096)
T ss_pred             eeheecceeEEEecccCCCCCCc----------------------ceEEEEEeecceEEEEEECCCcc-eeeee------
Confidence            99999999999999987665444                      789999999664 4444555433 22111      


Q ss_pred             cccCCCCCCCCCcceeEEeec-C-ccEEEEEecCCcEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 044070          739 TNTMGTAISGCIPQDVRLVLA-D-QFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGIAATSSFE  816 (903)
Q Consensus       739 ~~~~~~~~s~~~p~si~l~~~-~-~~~L~vgl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  816 (903)
                        .++.+   .+|+||++..+ + ..||+|+++||.+++|.++..+|                                 
T Consensus       576 --~l~~~---~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg---------------------------------  617 (1096)
T KOG1897|consen  576 --QLSGE---IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTG---------------------------------  617 (1096)
T ss_pred             --ccCCC---ccchheeeEEeeccceEEEEEcCCceEEEEEEEcccc---------------------------------
Confidence              12222   68999999988 3 79999999999999999998776                                 


Q ss_pred             cCCCCCccccccceeeecceeeEEEEEEeCCCceEEEecCCCeEEEEeCCceEEEEeeecCCcccCCCCCCCCCCeEEEE
Q 044070          817 SKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFV  896 (903)
Q Consensus       817 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~li~~~~~~l~~~~l~~~~~~~~~~f~s~~~~~g~~~~  896 (903)
                             ++++.+.+.||++|+.|+.|+..+.++|||+|||||++|..++++.|+|+++..+.++|||++++||++++++
T Consensus       618 -------~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~  690 (1096)
T KOG1897|consen  618 -------QLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA  690 (1096)
T ss_pred             -------eEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEe
Confidence                   3456677799999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             ecCeeeC
Q 044070          897 AENSLNL  903 (903)
Q Consensus       897 ~~~~l~~  903 (903)
                      +++.|+|
T Consensus       691 ~~~~l~i  697 (1096)
T KOG1897|consen  691 NGGALTI  697 (1096)
T ss_pred             cCCceEE
Confidence            9999975

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query903
3ei4_A 1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 5e-20
3i7h_A 1143 Crystal Structure Of Ddb1 In Complex With The H-Box 6e-20
2b5l_A 1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 6e-20
3ei1_A 1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 1e-19
4a0l_A 1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-19
4a11_A 1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 1e-19
4a08_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 1e-19
4a0b_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 1e-19
4a0a_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 1e-19
3e0c_A 1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 1e-19
4e54_A 1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 1e-19
2b5n_A323 Crystal Structure Of The Ddb1 Bpb Domain Length = 3 5e-08
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 26/235 (11%)
Query: 446 MGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGVAPEGSL 499
           +GD  ++K      E+   +V      N+ PI+DM VVD   + + Q+  C G   EGSL
Sbjct: 346 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 405
Query: 500 RIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRVGLNFTDV 559
           RIIR+GI + +    +    GI G W +R   +   +  LVLSFV +TRVL +     + 
Sbjct: 406 RIIRNGIGIHE--HASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEE 463
Query: 560 TDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWF-PEH 618
           T+ +GF  D  T  CG VA   L+QI   +VRL      A          + + W  P+ 
Sbjct: 464 TELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA----------LVSEWKEPQA 513
Query: 619 VSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSCISI 673
            +IS+ +   + ++V+     +        L +   E+ ++ H  ++ E++C+ I
Sbjct: 514 KNISVASCNSSQVVVAVGRALYY-------LQIHPQELRQISHTEMEHEVACLDI 561
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query903
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 3e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
 Score =  219 bits (558), Expect = 3e-59
 Identities = 151/892 (16%), Positives = 285/892 (31%), Gaps = 200/892 (22%)

Query: 23  PASPPRNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVC 82
             S  R  +       K + V     GH  S    +++  K T +E+ ++  +G+ + V 
Sbjct: 13  RGSGGRMSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGL-RPVK 71

Query: 83  EQAVFGTIKDLAVVPWNKKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQV 142
           E  ++G I  + +            +   KDLL +++       L +         + + 
Sbjct: 72  EVGMYGKIAVMELFRP---------KGESKDLLFILTAKYNACILEYKQSGESIDIITRA 122

Query: 143 HLS--NPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSES 200
           H +  +      + G +  +D    +I +  Y+    +  L   +               
Sbjct: 123 HGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDN--------------K 168

Query: 201 EVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAII---LNRRGALLNELLLV 257
           E+     R+ + + I      + F+            P +  +      R     E+ L 
Sbjct: 169 ELKAFNIRLEELHVI-----DVKFLYGC-------QAPTICFVYQDPQGRHVKTYEVSLR 216

Query: 258 GWNIREHAISVLSCFFEAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRT 317
                +      +   E    A  V+ VP  +G A +  IG   +         +     
Sbjct: 217 EKEFNKGPWKQENVEAE----ASMVIAVPEPFGGAII--IGQESITYHNGDKYLAIA--- 267

Query: 318 SLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDYDPMCIDSDSGNAKEPSK 377
                 P + +Q+ +    RV       L       L  L       ++ +       + 
Sbjct: 268 ------PPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLL------LEKEEQMDGTVTL 315

Query: 378 HVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGHKVHLSECLYKGPPCKALLWVEG 437
                    ET  I + +  +D G  F                                 
Sbjct: 316 KDLRVELLGETS-IAECLTYLDNGVVF--------------------------------- 341

Query: 438 RFLSAFVEMGDGMVLK------EENGRLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACC 491
                   +GD  ++K      E+   +V      N+ PI+DM VVD   + + Q+  C 
Sbjct: 342 ----VGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCS 397

Query: 492 GVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLR 551
           G   EGSLRIIR+GI + +    +    GI G W +R   +      LVLSFV +TRVL 
Sbjct: 398 GAFKEGSLRIIRNGIGIHEH--ASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLM 455

Query: 552 VGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVC 611
           +     + T+ +GF  D  T  CG VA   L+QI   +VRL                 + 
Sbjct: 456 LNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQE----------PKALV 505

Query: 612 TSW-FPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHMRLQSELSC 670
           + W  P+  +IS+ +   + ++V+     +          +   E+ ++ H  ++ E++C
Sbjct: 506 SEWKEPQAKNISVASCNSSQVVVAVGRALYYL-------QIHPQELRQISHTEMEHEVAC 558

Query: 671 ISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRV 730
           + I         S                         +      S  +L          
Sbjct: 559 LDITPLGDSNGLSP---------------------LCAIGLWTDISARILK--------- 588

Query: 731 LASGSIVLTNTMGTAISGCIPQDVRLV-LADQFYVLAGLRNGMLLRFEWPPDSNIPSSVA 789
           L S  ++    +G      IP+ + +       Y+L  L +G L  F    ++ +     
Sbjct: 589 LPSFELLHKEMLG---GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGL----- 640

Query: 790 PIHSPISATFRNTENIRSGIAATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDA 849
                                              L       +G  P  L         
Sbjct: 641 -----------------------------------LSDRKKVTLGTQPTVLRTFRSLSTT 665

Query: 850 DMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVECPKGILFVAENSL 901
           ++ A SDRP ++ ++ H L +++++ +   +  P+ S   P  +     ++L
Sbjct: 666 NVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTL 717
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query903
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 100.0
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.76
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.74
3ow8_A321 WD repeat-containing protein 61; structural genomi 96.51
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 96.43
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 96.38
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 96.31
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.29
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 96.23
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 96.21
4g56_B357 MGC81050 protein; protein arginine methyltransfera 96.11
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 96.02
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.01
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 95.98
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 95.95
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 95.93
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 95.75
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.44
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 95.37
3ow8_A321 WD repeat-containing protein 61; structural genomi 95.34
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 95.2
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 95.18
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 94.87
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 94.68
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 94.61
4g56_B357 MGC81050 protein; protein arginine methyltransfera 94.61
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 94.48
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 94.39
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 94.35
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 94.34
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 94.32
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 94.15
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 94.1
3jrp_A379 Fusion protein of protein transport protein SEC13 94.06
3jrp_A379 Fusion protein of protein transport protein SEC13 93.97
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 93.81
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 93.78
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 93.74
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 93.42
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 93.35
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 93.05
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 92.74
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 92.33
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 92.29
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 92.07
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 92.06
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 92.02
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 91.81
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 91.77
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 91.76
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 91.72
3jro_A 753 Fusion protein of protein transport protein SEC13 91.59
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 91.23
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 91.15
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 91.14
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 91.07
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 90.93
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 90.91
3jro_A 753 Fusion protein of protein transport protein SEC13 90.35
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 90.23
2xyi_A430 Probable histone-binding protein CAF1; transcripti 90.1
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 90.06
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 89.64
2pm7_B297 Protein transport protein SEC13, protein transport 89.47
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 89.08
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 88.95
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 88.7
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 88.26
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 87.83
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 87.76
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 87.72
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 87.38
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 87.38
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 87.31
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 87.01
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 86.89
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 86.85
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 86.82
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 86.57
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 86.22
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 86.19
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 86.11
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 85.95
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 85.92
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 85.45
4e54_B435 DNA damage-binding protein 2; beta barrel, double 85.08
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 84.93
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 84.73
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 84.12
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 83.85
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 83.42
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 83.3
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 82.95
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 82.3
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 81.89
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 81.48
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 81.47
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 81.06
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 80.9
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 80.7
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 80.3
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 80.23
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
Probab=100.00  E-value=3.2e-104  Score=1004.83  Aligned_cols=680  Identities=20%  Similarity=0.313  Sum_probs=580.6

Q ss_pred             eEEEEEEEecCCceeEEEEEEecCCCcCeEEEEcCCEEEEEEecCCCcEEEEEEEEeccceeEeeeeeccccccccCCCC
Q 044070           30 IHYLAKCVLKGSVVLQVAHGHLRSPTSNDVVFGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNKKFNAQNSQV  109 (903)
Q Consensus        30 ~~~~~~tl~~pt~V~~sl~g~f~~~~~~~LVv~k~~~LeIy~~~~~g~L~~v~~~~lfg~I~~i~~~~~~~~~~~~~p~~  109 (903)
                      +++|+.|+++||+|+||+.|||++++.+|||++|+|+||||+++++| |++++++++||+|++|++||         |++
T Consensus        20 ~~~Y~~t~~~pT~V~~av~g~F~~~~~~~Lvvak~~~Lel~~~~~~~-L~~v~~~~l~G~I~~l~~~r---------~~g   89 (1158)
T 3ei3_A           20 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKIAVMELFR---------PKG   89 (1158)
T ss_dssp             CCEEEEEEECCCSCCEEEEECSSCSSCCEEEEEETTEEEEEEEETTE-EEEEEEEECSSCEEEEEEEC---------CTT
T ss_pred             cEEEEEEeeCCChhhEEEEEEcCCCCccEEEEecCCEEEEEEEcccc-eEEEEEEEcccEEEEEEEEc---------CCC
Confidence            68999999999999999999999999999999999999999998876 99999999999999999997         588


Q ss_pred             CCccEEEEEeCCCcEEEEEEeCCCcceE--eeEEEEecCCCcccccCCcEEEECCCCCeeEEeeccccEEEEEeecCCCC
Q 044070          110 MGKDLLVVISDSGKLSFLAFCNEMHRFF--PVAQVHLSNPGNSRHQLGRMLAVDSSGCLIAVSAYEDRLGLFSLSMSSGS  187 (903)
Q Consensus       110 ~~~D~Llv~tds~~l~iL~~d~~~~~f~--tv~~~~~~~~g~~~~~~g~~l~VDP~~R~ial~~~e~~l~v~pl~~~~~~  187 (903)
                      .++|+|+|+||+|++++|+||++++++.  +.+.+.+...-.+...+|+|++|||+|||+|+++||++++||||++++. 
T Consensus        90 ~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~-  168 (1158)
T 3ei3_A           90 ESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK-  168 (1158)
T ss_dssp             CSSCEEEEEETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCT-
T ss_pred             CCceEEEEEeCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCcc-
Confidence            9999999999999999999999876544  4444445533345567899999999999999999999999999986421 


Q ss_pred             ccccccccCCCCccccCcccceeeeccccccEEEEEEeeCCCCCCCCCCCcEEEEEEeecCCccceEEEEEEEccCCcee
Q 044070          188 DIIDKKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALLNELLLVGWNIREHAIS  267 (903)
Q Consensus       188 ~~~~~~~~sP~~~e~~~s~~~~~~~~~~~~~i~dm~FL~~~~~~~~~~~~PtlavL~~~~~~~~~~l~~y~ldl~~~~~~  267 (903)
                               .+         ..++++..+.+|+||+|||+       |+||+||+||++.  ..+++++|++|++++.  
T Consensus       169 ---------~l---------~~~~~~l~~~~v~d~~fL~g-------~~~P~~A~Ly~d~--~~~~l~~y~ldl~~~~--  219 (1158)
T 3ei3_A          169 ---------EL---------KAFNIRLEELHVIDVKFLYG-------CQAPTICFVYQDP--QGRHVKTYEVSLREKE--  219 (1158)
T ss_dssp             ---------TC---------CCEEEECSCCCEEEEEECSS-------CSSCEEEEEEEET--TEEEEEEEEEETTTTE--
T ss_pred             ---------cc---------cccccccccceEEEEEEecC-------CCCcEEEEEEECC--CCCEEEEEEEEcCCCe--
Confidence                     11         22335567789999999998       9999999999984  3689999999999963  


Q ss_pred             eee-eee--cCCCCcceEEeecCCCCceEEEeeCcEEEEecCCCCCCeeeeeccccCCCCcccccceeccccccccCCCc
Q 044070          268 VLS-CFF--EAGPLAHCVVEVPRSYGFAFVFRIGDALLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDE  344 (903)
Q Consensus       268 vi~-~~~--~~~~~~~~li~vP~~~ggvlv~~~~~il~i~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~  344 (903)
                      +.+ .|.  ..++.+++|||||+|+||+||+|+|.|+|+++++..                                   
T Consensus       220 ~~~~~w~~~~l~~~a~~LipVP~~~gGvlv~g~n~i~y~~~~~~~-----------------------------------  264 (1158)
T 3ei3_A          220 FNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYL-----------------------------------  264 (1158)
T ss_dssp             EEECSSCCEEECTTCCEEEECCTTTCCEEEECSSCEEEEETTEEE-----------------------------------
T ss_pred             eeecccccccCCCCCCEEEECCCCCceEEEEECCEEEEEcCCCce-----------------------------------
Confidence            222 254  347789999999999999999999999999875310                                   


Q ss_pred             ccceeeeeeccccccCCCCccCCCCCCCCCCCeeEEEEeeccCCCCCCeEEEEeCCCCEEEEEEEeCCCc---cEEE-Ec
Q 044070          345 GLFNVAACALLELRDYDPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDG---HKVH-LS  420 (903)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~i~~~~~~~~~~~~~~~~LL~~e~G~l~~l~l~~~~~~---~~v~-~~  420 (903)
                            ..+ .|.++               +..++|++.+   +.++.++||++++|+||+|+|+.+++.   ..|+ +.
T Consensus       265 ------~~~-~p~~~---------------~~~i~~~~~~---~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~  319 (1158)
T 3ei3_A          265 ------AIA-PPIIK---------------QSTIVCHNRV---DPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR  319 (1158)
T ss_dssp             ------EEC-CGGGG---------------GSCEEEEEEC---STTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEE
T ss_pred             ------EEe-ccccC---------------CceEEEEEEE---ecCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEE
Confidence                  011 13221               1244554433   344689999999999999999998751   2454 55


Q ss_pred             eecc-CCCCcceEEEECCCeEEEEEeeCCeEEEEEeCC------ceEEeeeecccccccceEEeecCCCCCCeEEEEeeC
Q 044070          421 ECLY-KGPPCKALLWVEGRFLSAFVEMGDGMVLKEENG------RLVYTSPIQNIAPILDMSVVDYHDEKRDQMFACCGV  493 (903)
Q Consensus       421 ~~~~-~~~~~ssl~~l~~~~lFvgS~~gds~L~~~~~~------~~~~~~~l~N~gPI~D~~v~~~~~~~~~~lva~sG~  493 (903)
                      +.++ .+++|+++++|++|+||+||++|||+|||++..      .++++++++|||||+||+++|..++++++|++|||+
T Consensus       320 i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~  399 (1158)
T 3ei3_A          320 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGA  399 (1158)
T ss_dssp             EEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECC
T ss_pred             EEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECc
Confidence            5544 588999999999999999999999999999832      378999999999999999999877788999999999


Q ss_pred             CCCCcEEEEeccCceeEEeecCCCCCCccEEEEeeecCCCCcceEEEEEecCceEEEEe-CCccccccCcCCccCCCCeE
Q 044070          494 APEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLVLSFVEETRVLRV-GLNFTDVTDSVGFRPDVCTL  572 (903)
Q Consensus       494 g~~GsL~~lr~gi~~~~~~~~~~~~~~v~~iWtl~~~~~~~~~~~LvlS~~~~T~vl~~-~~~~~e~~~~~~f~~~~~Tl  572 (903)
                      |++|+|+++|+||+++++++++  +++++++|+++....+++|.|||+||+++|+||++ ++++||++++ ||.++++||
T Consensus       400 g~~gsL~~lr~Gi~~~~~~~~~--l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~-gf~~~~~TL  476 (1158)
T 3ei3_A          400 FKEGSLRIIRNGIGIHEHASID--LPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM-GFVDDQQTF  476 (1158)
T ss_dssp             GGGCEEEEEEESBCEEEEEEEC--CCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEECCT-TCCSSSCEE
T ss_pred             CCCCeEEEEecCCCEEEEEeec--CCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCcccccccc-cccCCCCcE
Confidence            9999999999999999999996  78999999999876678999999999999999999 6789999776 999999999


Q ss_pred             EEEeeCCCeEEEEEcCcEEEEccCcccccCCCCCCCCeeeeEec-CCeeEEEEEecCCEEEEEEeCCcEEEEEeEEeccc
Q 044070          573 ACGLVADGLLVQIHQNAVRLCMPTMVAHSGGIPLSYPVCTSWFP-EHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSV  651 (903)
Q Consensus       573 ~a~~~~~~~ivQVT~~~irl~~~~~~~~~~~~~~~~~~~~~w~~-~~~~I~~As~~~~~vvva~~~~~il~~~~~~~~~~  651 (903)
                      +|++++++.+||||+++||+++.+..          ..+.+|.+ .+..|++|+++++||+++ .+++++||+..    +
T Consensus       477 ~~~~l~~~~ivQVt~~~Irli~~~~~----------~~~~~w~~p~~~~I~~As~n~~~vvva-~g~~l~~fel~----~  541 (1158)
T 3ei3_A          477 FCGNVAHQQLIQITSASVRLVSQEPK----------ALVSEWKEPQAKNISVASCNSSQVVVA-VGRALYYLQIH----P  541 (1158)
T ss_dssp             EEEEETTTEEEEEESSCEEEEESSSC----------CEEEEECCTTCCCCCEEEECSSEEEEE-ETTEEEEEEEE----T
T ss_pred             EEEEcCCCeEEEEecCEEEEEECCCC----------eEEEEEECCCCCEEEEEEeCCCEEEEE-ECCEEEEEEee----C
Confidence            99999999999999999999987643          36889997 778899999999999999 48889998765    3


Q ss_pred             cceEEEEeeeccCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEec-CCeEEEEEccCCCCeeE
Q 044070          652 SHYEIYEMQHMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTH-RPSVEVLSFVPKEGLRV  730 (903)
Q Consensus       652 g~~~L~~~~~~~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~-d~~v~i~sl~~~~~l~~  730 (903)
                      +  +|.+..+.++++||+|+++.+.++|+.+                      +.++|||+| |++|+||+|++   ++.
T Consensus       542 ~--~L~~~~~~~l~~evscl~i~~~~~~~~~----------------------s~~~aVg~~~d~tv~I~sL~~---l~~  594 (1158)
T 3ei3_A          542 Q--ELRQISHTEMEHEVACLDITPLGDSNGL----------------------SPLCAIGLWTDISARILKLPS---FEL  594 (1158)
T ss_dssp             T--EEEEEEEEECSSCEEEEECCCCSSSTTC----------------------CSEEEEEETTTTEEEEEETTT---CCE
T ss_pred             C--ceeeecccCCCCceEEEEeecCCCCccc----------------------ccEEEEEECCCCEEEEEECCC---CCe
Confidence            3  5778888999999999999886555443                      789999999 99999999985   555


Q ss_pred             EEeeeeeecccCCCCCCCCCcceeEEeec-CccEEEEEecCCcEEEEEecCCCCCCCCCCCCCCCccccccccccccccc
Q 044070          731 LASGSIVLTNTMGTAISGCIPQDVRLVLA-DQFYVLAGLRNGMLLRFEWPPDSNIPSSVAPIHSPISATFRNTENIRSGI  809 (903)
Q Consensus       731 ~s~~~l~~~~~~~~~~s~~~p~si~l~~~-~~~~L~vgl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  809 (903)
                      ++.+++.      .+   .+|+|++++.+ +.+||+|||+||.|++|.+++.+|                          
T Consensus       595 ~~~~~L~------~~---~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg--------------------------  639 (1158)
T 3ei3_A          595 LHKEMLG------GE---IIPRSILMTTFESSHYLLCALGDGALFYFGLNIETG--------------------------  639 (1158)
T ss_dssp             EEEEECC------SS---CCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTC--------------------------
T ss_pred             EEEEECC------CC---CCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCC--------------------------
Confidence            6766653      21   47999999988 479999999999999999998776                          


Q ss_pred             ccccccccCCCCCccccccceeeecceeeEEEEEEeCCCceEEEecCCCeEEEEeCCceEEEEeeecCCcccCCCCCCCC
Q 044070          810 AATSSFESKDELPINLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC  889 (903)
Q Consensus       810 ~~~~~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~li~~~~~~l~~~~l~~~~~~~~~~f~s~~~  889 (903)
                                    ++.+.++++||++|++|+++...+..+||++|++||++|.+++++.|+|++++++.++|+|++++|
T Consensus       640 --------------~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~  705 (1158)
T 3ei3_A          640 --------------LLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGY  705 (1158)
T ss_dssp             --------------CEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSS
T ss_pred             --------------ccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccC
Confidence                          345677889999999999999777889999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCeeeC
Q 044070          890 PKGILFVAENSLNL  903 (903)
Q Consensus       890 ~~g~~~~~~~~l~~  903 (903)
                      |+|++++++++|||
T Consensus       706 ~~g~v~~~~~~LrI  719 (1158)
T 3ei3_A          706 PDSLALANNSTLTI  719 (1158)
T ss_dssp             TTEEEEECSSCEEE
T ss_pred             CCcEEEEcCCceEE
Confidence            99999999999986
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query903
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.03
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 96.96
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 96.63
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 96.26
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 96.18
d1tbga_340 beta1-subunit of the signal-transducing G protein 95.95
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 93.72
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 93.32
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 92.11
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 91.14
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 91.01
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 90.88
d1tbga_340 beta1-subunit of the signal-transducing G protein 89.81
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 88.72
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 87.12
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 85.41
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 84.98
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 84.74
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 84.45
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 83.92
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 83.31
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 82.79
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 81.9
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 81.87
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.03  E-value=0.095  Score=53.41  Aligned_cols=135  Identities=7%  Similarity=0.036  Sum_probs=74.7

Q ss_pred             CcEEEEccCcccccCCCCCCCCeeeeEecCCeeEEEEEec--CCEEEEEEeCCcEEEEEeEEeccccceEEEEeeec---
Q 044070          588 NAVRLCMPTMVAHSGGIPLSYPVCTSWFPEHVSISLGAVA--HNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQHM---  662 (903)
Q Consensus       588 ~~irl~~~~~~~~~~~~~~~~~~~~~w~~~~~~I~~As~~--~~~vvva~~~~~il~~~~~~~~~~g~~~L~~~~~~---  662 (903)
                      ..|++.+....          .....+......|.+.+..  +++++.+..++.+.++...    .+. .+......   
T Consensus       169 ~~i~i~d~~~~----------~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~----~~~-~~~~~~~~~~~  233 (311)
T d1nr0a1         169 NTVAIFEGPPF----------KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV----DGT-KTGVFEDDSLK  233 (311)
T ss_dssp             SCEEEEETTTB----------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TCC-EEEECBCTTSS
T ss_pred             ccccccccccc----------ccccccccccccccccccCccccccccccccccccccccc----ccc-ccccccccccc
Confidence            34667665432          1333443323457776664  4566666566766654322    211 12221111   


Q ss_pred             --cCCCceeEEEccCCCCcccCCCCCccccCCCCCCCCCCccccceEEEEEecCCeEEEEEccCCCCeeEEEeeeeeecc
Q 044070          663 --RLQSELSCISIPQKHPERRKSSSPISLVSNSSVPALPAGVIIGYTFVIGTHRPSVEVLSFVPKEGLRVLASGSIVLTN  740 (903)
Q Consensus       663 --~l~~eiscl~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~d~~v~i~sl~~~~~l~~~s~~~l~~~~  740 (903)
                        .....|.|+++.+.                            +.+|+.|..|++|+||++...+.+..+..       
T Consensus       234 ~~~h~~~V~~~~~s~~----------------------------~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~-------  278 (311)
T d1nr0a1         234 NVAHSGSVFGLTWSPD----------------------------GTKIASASADKTIKIWNVATLKVEKTIPV-------  278 (311)
T ss_dssp             SCSSSSCEEEEEECTT----------------------------SSEEEEEETTSEEEEEETTTTEEEEEEEC-------
T ss_pred             cccccccccccccCCC----------------------------CCEEEEEeCCCeEEEEECCCCcEEEEEEC-------
Confidence              12467889988652                            46889999999999999876554433211       


Q ss_pred             cCCCCCCCCCcceeEEeecCccEEEEEecCCcEEEEEe
Q 044070          741 TMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEW  778 (903)
Q Consensus       741 ~~~~~~s~~~p~si~l~~~~~~~L~vgl~~G~l~~~~~  778 (903)
                        ..    .....+.-......+|+.+-.||.+..+..
T Consensus       279 --~~----~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         279 --GT----RIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             --CS----SGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             --CC----CccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence              01    011122212223457888889999987764
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure