Citrus Sinensis ID: 044090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MATCISTCFSPSHTCISKETQISGASLVKILDYRSDSWGACLRNVKDFPRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccEEEEEEEccccHHHHHHHHHccccEEEEEEEEcHHHHHHccccccccEEEcccccccccccccccHHHHHHHHHcHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccEEcccEEEEEEccccccEEEEcccccccccEEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHccccccEEEEEEcEcEHHHHccccccEEEEccHHHHccEcccccHHHHHHHHHHcHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHcccEEEEEEEEccHHHcHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHcc
Coil and Loop (DISEMBL)
matcistcfspshtcisketqisgASLVKILDYrsdswgaclrnvkdfprfkcsakahnvspnhskdpfldlhpevsmlsgdgtnVLFGSmkeglgesvSESLrqssvpnnnneaKIKVIgvggggsnAVNRMIESSMTGVEFWIVNTDaqamkvspvipenrlQIGCEltrglgaggnpsvgmnaanESKVAIEEAISGADMIFVtagmgggtgtgaAPVIAGIAKSMGILTVGIatvpfcfeGRRRAIQAQEGVANlrnnvdtlivipndklltavs
Flexible Loop (DISEMBL)
matcistcfspshtcisketqisgASLVKILDYRSDSWGACLRNVKDFPRFKCSAkahnvspnhskDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLrqssvpnnnneakikvigvggggsNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEgvanlrnnvdtlivipndklltavs
Low Complexity Region (SEG)
MATCISTCFSPSHTCISKETQISGASLVKILDYRSDSWGACLRNVKDFPRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNNNEAkikvigvggggSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFvtagmgggtgtgaapviagiaKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS
Disordered region (IsUnstruct)
***CISTCFSPSHTCISKETQISGASLVKILDYRSDSWGACLRNVKDFPRFKCSA*************************************************************IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAG*************KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLL****
Disordered Region (DISOPRED)
********F********************************************************************************************************EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV*
Disordered Region (DISEMBL)
MATCISTCFSPSHTCISKETQISGASLVKILDYRSDSWGACLRNVKDFPRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGL*************PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS
Disordered Region (DISPRO)
**TCISTCFSPSHTCISKETQISGASLVKILDYRSDSWGACLRNVKDFPRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLS********************************NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATCISTCFSPSHTCISKETQISGASLVKILDYRSDSWGACLRNVKDFPRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
O82533	478	Cell division protein Fts	yes	no	0.985	0.575	0.613	5e-82
Q9LXJ0	473	Cell division protein Fts	no	no	0.788	0.465	0.689	1e-74
Q9K9T7	382	Cell division protein Fts	yes	no	0.584	0.426	0.660	4e-43
P45482	428	Cell division protein Fts	yes	no	0.620	0.404	0.598	4e-42
P45501	407	Cell division protein Fts	yes	no	0.526	0.361	0.624	3e-41
P45500	399	Cell division protein Fts	yes	no	0.526	0.368	0.624	5e-41
P0A0S6	392	Cell division protein Fts	yes	no	0.577	0.410	0.579	3e-40
P0A0S5	392	Cell division protein Fts	yes	no	0.577	0.410	0.579	3e-40
P94337	442	Cell division protein Fts	yes	no	0.584	0.368	0.660	3e-40
P72079	392	Cell division protein Fts	yes	no	0.577	0.410	0.573	1e-39

>sp|O82533|FTZ21_ARATH Cell division protein FtsZ homolog 2-1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ2-1 PE=1 SV=2

 Score =  304 bits (779), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 176/287 (61%), Positives = 216/287 (75%), Gaps = 12/287 (4%)

Query: 1   MATCISTCFSPSH----TCISK----ETQISGASLVKILDYRSDSWGACLRNVKDFPRFK 52
           MAT +S CF+PS     T + K    E  +   + ++ +D + +      +  +  P  +
Sbjct: 1   MATYVSPCFTPSDSRLLTVLRKNVLPENHLGRLNSIRTIDSKKNRVVVAAQKSESSP-IR 59

Query: 53  CSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNN 112
            S + +    + ++DPFL+LHPE+SML G+GT+ +    KE     V E   + S P+N 
Sbjct: 60  NSPRHYQ---SQAQDPFLNLHPEISMLRGEGTSTIVNPRKETSSGPVVEDFEEPSAPSNY 116

Query: 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
           NEA+IKVIGVGGGGSNAVNRMIES M+GVEFWIVNTD QAM++SPV+P+NRLQIG ELTR
Sbjct: 117 NEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIGKELTR 176

Query: 173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL 232
           GLGAGGNP +GMNAA ESK  IEEA+ G+DM+FVTAGMGGGTGTGAAPVIAGIAK+MGIL
Sbjct: 177 GLGAGGNPEIGMNAARESKEVIEEALYGSDMVFVTAGMGGGTGTGAAPVIAGIAKAMGIL 236

Query: 233 TVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           TVGIAT PF FEGRRR +QAQEG+A+LR+NVDTLIVIPNDKLLTAVS
Sbjct: 237 TVGIATTPFSFEGRRRTVQAQEGLASLRDNVDTLIVIPNDKLLTAVS 283

Exhibits GTPase activity. Component of the plastid division machinery that forms a contractile ring at the division site. Required for plastid division in a dose-dependent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXJ0|FTZ22_ARATH Cell division protein FtsZ homolog 2-2, chloroplastic OS=Arabidopsis thaliana GN=FTSZ2-2 PE=1 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 183/229 (79%), Gaps = 9/229 (3%)

Query: 51  FKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPN 110
            + S  +H+ S   S+D FL+LHPE+SML+           KE     ++E L + S PN
Sbjct: 60  IRNSLNSHSTSHFQSQDSFLNLHPEISMLN---------PRKETSSVPITEDLDELSTPN 110

Query: 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCEL 170
             NEA+IKVIGVGGGGSNAVNRMIES M GVEFWIVNTD QAM++SPV P+NRLQIG EL
Sbjct: 111 TYNEARIKVIGVGGGGSNAVNRMIESEMIGVEFWIVNTDIQAMRISPVFPDNRLQIGKEL 170

Query: 171 TRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG 230
           TRGLGAGGNP +GMNAA ESK AI+EA+ G+DM+FVTAGMGGGTGTG AP+IAG+AK+MG
Sbjct: 171 TRGLGAGGNPEIGMNAATESKEAIQEALYGSDMVFVTAGMGGGTGTGGAPIIAGVAKAMG 230

Query: 231 ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           ILTVGI T PF FEGRRRA+QAQEG+A LR+NVDTLIVIPNDKLL AVS
Sbjct: 231 ILTVGIVTTPFSFEGRRRALQAQEGIAALRDNVDTLIVIPNDKLLAAVS 279

Exhibits GTPase activity (By similarity). Component of the plastid division machinery that forms a contractile ring at the division site.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9K9T7|FTSZ_BACHD Cell division protein FtsZ OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=ftsZ PE=3 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 131/165 (79%), Gaps = 2/165 (1%)

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           A+IKVIGVGGGGSNAVNRMIE+ + GV+F  VNTDAQA+ +S    E +LQ+G +LTRGL
Sbjct: 12  AQIKVIGVGGGGSNAVNRMIENGLQGVDFISVNTDAQALHLSKA--EVKLQLGGKLTRGL 69

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAG NP +G  AA ES+  IEEA+ GADM+F+TAGMGGGTGTGAAPVIA +AK +G LTV
Sbjct: 70  GAGANPEIGKKAAEESREQIEEALQGADMVFITAGMGGGTGTGAAPVIAEVAKEIGALTV 129

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           G+ T PF FEGR+R+ QA  G+A L+  VDTLIVIPND+LL  V 
Sbjct: 130 GVVTRPFTFEGRKRSTQAAAGIAALKEKVDTLIVIPNDRLLEIVD 174

Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

>sp|P45482|FTSZ_NOSS1 Cell division protein FtsZ OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ftsZ PE=3 SV=2

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 138/182 (75%), Gaps = 9/182 (4%)

Query: 104 RQSSVPNNN-------NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156
           ++ SV NN          A IKVIGVGGGG NAVNRMIES ++GVEFW +NTDAQA+ ++
Sbjct: 46  KKISVENNRIGEIVPGRVANIKVIGVGGGGGNAVNRMIESDVSGVEFWSINTDAQALTLA 105

Query: 157 PVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGT 216
                +RLQIG +LTRGLGAGGNP++G  AA ES+  I  A+ GAD++F+TAGMGGGTGT
Sbjct: 106 GA--PSRLQIGQKLTRGLGAGGNPAIGQKAAEESRDEIATALEGADLVFITAGMGGGTGT 163

Query: 217 GAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLT 276
           GAAP++A +AK MG LTVG+ T PF FEGRRR  QA++G+  L++ VDTLI+IPN+KLL 
Sbjct: 164 GAAPIVAEVAKEMGALTVGVVTRPFVFEGRRRTSQAEQGIEGLKSRVDTLIIIPNNKLLE 223

Query: 277 AV 278
            +
Sbjct: 224 VI 225

Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P45501|FTSZ_STRGR Cell division protein FtsZ OS=Streptomyces griseus GN=ftsZ PE=3 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 116/149 (77%), Gaps = 2/149 (1%)

Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
           NA+NRMIE  + GVEF  +NTDAQA+ +S    + +L +G ELTRGLGAG NP+VG  AA
Sbjct: 22  NAINRMIEVGLKGVEFIAINTDAQALLMSDA--DVKLDVGRELTRGLGAGANPAVGRKAA 79

Query: 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRR 247
            + +  IEE + GADM+FVTAG GGGTGTG APV+A IA+S+G LT+G+ T PF FEGRR
Sbjct: 80  EDHREEIEEVLKGADMVFVTAGEGGGTGTGRAPVVANIARSLGALTIGVVTRPFTFEGRR 139

Query: 248 RAIQAQEGVANLRNNVDTLIVIPNDKLLT 276
           RA QA++G+A LR  VDTLIVIPND+LL+
Sbjct: 140 RANQAEDGIAELREEVDTLIVIPNDRLLS 168

Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.

Streptomyces griseus (taxid: 1911)

>sp|P45500|FTSZ_STRCO Cell division protein FtsZ OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=ftsZ PE=3 SV=1

 Score =  168 bits (425), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 116/149 (77%), Gaps = 2/149 (1%)

Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
           NA+NRMIE  + GVEF  +NTDAQA+ +S    + +L +G ELTRGLGAG NP+VG  AA
Sbjct: 22  NAINRMIEVGLKGVEFIAINTDAQALLMSDA--DVKLDVGRELTRGLGAGANPAVGRKAA 79

Query: 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRR 247
            + +  IEE + GADM+FVTAG GGGTGTG APV+A IA+S+G LT+G+ T PF FEGRR
Sbjct: 80  EDHREEIEEVLKGADMVFVTAGEGGGTGTGGAPVVANIARSLGALTIGVVTRPFTFEGRR 139

Query: 248 RAIQAQEGVANLRNNVDTLIVIPNDKLLT 276
           RA QA++G+A LR  VDTLIVIPND+LL+
Sbjct: 140 RANQAEDGIAELREEVDTLIVIPNDRLLS 168

Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

>sp|P0A0S6|FTSZ_NEIMB Cell division protein FtsZ OS=Neisseria meningitidis serogroup B (strain MC58) GN=ftsZ PE=3 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 125/164 (76%), Gaps = 3/164 (1%)

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           A IKVIG+GGGG NA+N M+ +++ GVEF   NTDAQ++  +      R+Q+G  LTRGL
Sbjct: 15  AVIKVIGLGGGGCNAINNMVANNVRGVEFISANTDAQSLAKNHA--AKRIQLGTNLTRGL 72

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAG NP +G  AA E + AIEEAI GA+M+F+T GMGGGTGTG+APV+A IAKS+GILTV
Sbjct: 73  GAGANPDIGRAAAQEDREAIEEAIRGANMLFITTGMGGGTGTGSAPVVAEIAKSLGILTV 132

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            + T PF +EG+R  + AQ G+  L+ +VD+LI+IPNDKL+TA+
Sbjct: 133 AVVTRPFAYEGKRVHV-AQAGLEQLKEHVDSLIIIPNDKLMTAL 175

Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

>sp|P0A0S5|FTSZ_NEIMA Cell division protein FtsZ OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=ftsZ PE=3 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 125/164 (76%), Gaps = 3/164 (1%)

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           A IKVIG+GGGG NA+N M+ +++ GVEF   NTDAQ++  +      R+Q+G  LTRGL
Sbjct: 15  AVIKVIGLGGGGCNAINNMVANNVRGVEFISANTDAQSLAKNHA--AKRIQLGTNLTRGL 72

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAG NP +G  AA E + AIEEAI GA+M+F+T GMGGGTGTG+APV+A IAKS+GILTV
Sbjct: 73  GAGANPDIGRAAAQEDREAIEEAIRGANMLFITTGMGGGTGTGSAPVVAEIAKSLGILTV 132

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            + T PF +EG+R  + AQ G+  L+ +VD+LI+IPNDKL+TA+
Sbjct: 133 AVVTRPFAYEGKRVHV-AQAGLEQLKEHVDSLIIIPNDKLMTAL 175

Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

>sp|P94337|FTSZ_CORGL Cell division protein FtsZ OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=ftsZ PE=1 SV=2

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 125/165 (75%), Gaps = 2/165 (1%)

Query: 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCEL 170
           NN  AKIKV+GVGGGG NAVNRMIE  + GVEF  VNTD+QA+  S    + +L IG E 
Sbjct: 5   NNYLAKIKVVGVGGGGVNAVNRMIEEGLKGVEFIAVNTDSQALMFSDA--DVKLDIGREA 62

Query: 171 TRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG 230
           TRGLGAG NP VG  +A + K  IEE I GADM+FVTAG GGGTGTGAAPV+AGIAK MG
Sbjct: 63  TRGLGAGANPEVGRASAEDHKNEIEETIKGADMVFVTAGEGGGTGTGAAPVVAGIAKKMG 122

Query: 231 ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLL 275
            LT+G+ T PF FEGRRR  QA+EG+A L+   DTLIVIPND+LL
Sbjct: 123 ALTIGVVTKPFEFEGRRRTRQAEEGIAALKEVCDTLIVIPNDRLL 167

Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.

Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) (taxid: 196627)

>sp|P72079|FTSZ_NEIGO Cell division protein FtsZ OS=Neisseria gonorrhoeae GN=ftsZ PE=3 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 124/164 (75%), Gaps = 3/164 (1%)

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           A IKVIG+GGGG NA+N M+ +++  VEF   NTDAQ++  +      R+Q+G  LTRGL
Sbjct: 15  AVIKVIGLGGGGCNAINNMVANNVRSVEFISANTDAQSLAKNHA--AKRIQLGTNLTRGL 72

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAG NP +G  AA E + AIEEAI GA+M+F+T GMGGGTGTG+APV+A IAKS+GILTV
Sbjct: 73  GAGANPDIGRAAAQEDREAIEEAIRGANMLFITTGMGGGTGTGSAPVVAEIAKSLGILTV 132

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            + T PF +EG+R  + AQ G+  L+ +VD+LI+IPNDKL+TA+
Sbjct: 133 AVVTRPFSYEGKRVHV-AQAGLEQLKEHVDSLIIIPNDKLMTAL 175

Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.

Neisseria gonorrhoeae (taxid: 485)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
224132386	476	predicted protein [Populus trichocarpa]	0.996	0.584	0.684	2e-91
224102827	477	predicted protein [Populus trichocarpa]	1.0	0.584	0.698	3e-90
225440898	486	PREDICTED: cell division protein ftsZ ho	1.0	0.574	0.673	8e-89
6685070	483	FtsZ protein [Gentiana lutea]	0.996	0.575	0.668	1e-86
255575683	485	Cell division protein ftsZ, putative [Ri	0.992	0.571	0.652	1e-84
255565619	491	Cell division protein ftsZ, putative [Ri	0.982	0.558	0.662	6e-82
297827101	479	hypothetical protein ARALYDRAFT_902736 [	0.974	0.567	0.611	2e-80
378750401	485	FtsZ2 protein [Manihot esculenta]	0.992	0.571	0.632	2e-80
18404086	478	Tubulin/FtsZ-like protein [Arabidopsis t	0.985	0.575	0.613	3e-80
14787784	468	FtsZ-like protein [Nicotiana tabacum]	0.964	0.574	0.656	1e-79

>gi|224132386|ref|XP_002328256.1| predicted protein [Populus trichocarpa] gi|222837771|gb|EEE76136.1| predicted protein [Populus trichocarpa]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/285 (68%), Positives = 223/285 (78%), Gaps = 7/285 (2%)

Query: 1   MATCISTCFSPSHTCISKETQISGAS------LVKILDYRSDSWGACLRNVKDFPRFKCS 54
           MA+C+S  F+PS T IS   +IS  +        +  D +  SWGAC RN     + +CS
Sbjct: 1   MASCVSPPFTPSGTQISVGRRISTENRFGRIVTAQRFDKKKGSWGACGRNAVSISQIRCS 60

Query: 55  AKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNNNE 114
             +HN+SPNH KD FLDLHPEVSML  D  +      KE  G +V+ES   +S  +N NE
Sbjct: 61  VNSHNISPNH-KDSFLDLHPEVSMLRSDANDTYSSVRKETSGRNVTESSGDTSFMSNYNE 119

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           AKIKV+GVGGGGSNAVNRMIESS+TGVEFWIVNTD QAMK+SPV+PENRLQ+G ELTRGL
Sbjct: 120 AKIKVVGVGGGGSNAVNRMIESSLTGVEFWIVNTDIQAMKMSPVLPENRLQVGKELTRGL 179

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAGGNP +GMNAANESK AIEEA+ GADM+F+TAGMGGGTGTG APVIAG+AKSMGILTV
Sbjct: 180 GAGGNPDIGMNAANESKAAIEEALYGADMVFITAGMGGGTGTGGAPVIAGVAKSMGILTV 239

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           GI T PF FEGRRRA+QAQEG+A LRNNVDTLIVIPNDKLLTAVS
Sbjct: 240 GIVTSPFSFEGRRRAVQAQEGIAALRNNVDTLIVIPNDKLLTAVS 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102827|ref|XP_002312816.1| predicted protein [Populus trichocarpa] gi|222849224|gb|EEE86771.1| predicted protein [Populus trichocarpa]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/285 (69%), Positives = 225/285 (78%), Gaps = 6/285 (2%)

Query: 1   MATCISTCFSPSHTCISKETQISGASLV------KILDYRSDSWGACLRNVKDFPRFKCS 54
           MATC+S  F+PS T IS   +IS  + +      K  D ++ S GA  RNV   P+ +CS
Sbjct: 1   MATCVSPPFTPSGTQISVRRRISTENRIGKTVTFKRFDKKNGSCGAYERNVFSIPQIRCS 60

Query: 55  AKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNNNE 114
             +HN+SPNHSKD FLDLHPEVSML  D  +      KE  G +V+ES   SS  +N NE
Sbjct: 61  VNSHNISPNHSKDSFLDLHPEVSMLRSDANDTYSCLRKETSGVNVTESSGDSSFMSNYNE 120

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           AKIKVIGVGGGGSNAVNRMIESS+TGV+FWIVNTD QAMK+SPV+PENRLQ+G ELTRGL
Sbjct: 121 AKIKVIGVGGGGSNAVNRMIESSLTGVDFWIVNTDIQAMKMSPVLPENRLQVGKELTRGL 180

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAGGNP VGMNAANESK AIEEA+ GADM+F+TAGMGGGTGTG APVIA +AKSMGILTV
Sbjct: 181 GAGGNPDVGMNAANESKAAIEEALYGADMVFITAGMGGGTGTGGAPVIASVAKSMGILTV 240

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           GI T PF FEGRRRA+QAQEG+A LRNNVDTLIVIPNDKLLTAVS
Sbjct: 241 GIVTTPFSFEGRRRAVQAQEGIAALRNNVDTLIVIPNDKLLTAVS 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440898|ref|XP_002282740.1| PREDICTED: cell division protein ftsZ homolog 2-1, chloroplastic [Vitis vinifera] gi|147856408|emb|CAN80330.1| hypothetical protein VITISV_018274 [Vitis vinifera]

 Score =  332 bits (852), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 196/291 (67%), Positives = 227/291 (78%), Gaps = 12/291 (4%)

Query: 1   MATCISTCFSPSHTC------------ISKETQISGASLVKILDYRSDSWGACLRNVKDF 48
           MATC+S+ F+PS T             IS        + +K+ D +++  GA  R     
Sbjct: 1   MATCMSSYFTPSDTRNQMELLNVLGRRISLGNHQRRVNSLKMFDDKNEMLGAGQRISSRL 60

Query: 49  PRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSV 108
           P+FKCSA +H+VSP HSKDPFLDLHPEVSML G+G++ +    K+    SV+ES+R SS 
Sbjct: 61  PQFKCSANSHSVSPYHSKDPFLDLHPEVSMLRGEGSSNVSSPRKDASSGSVTESIRDSSG 120

Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
           P+N NEAKIKVIGVGGGGSNAVNRMIESSM GVEFWIVNTD QAM++SPV  E+RLQIG 
Sbjct: 121 PSNYNEAKIKVIGVGGGGSNAVNRMIESSMQGVEFWIVNTDVQAMRMSPVYTEHRLQIGQ 180

Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
           ELTRGLGAGGNP +GMNAA ESK AIEEA+ GADM+FVTAGMGGGTGTG APVIAG+AKS
Sbjct: 181 ELTRGLGAGGNPDIGMNAAKESKEAIEEAVYGADMVFVTAGMGGGTGTGGAPVIAGVAKS 240

Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           MGILTVGI T PF FEGRRRA+QAQEG+A LR++VDTLIVIPNDKLLTAVS
Sbjct: 241 MGILTVGIVTTPFSFEGRRRAVQAQEGIAALRDSVDTLIVIPNDKLLTAVS 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6685070|gb|AAF23771.1|AF205859_1 FtsZ protein [Gentiana lutea]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 192/287 (66%), Positives = 219/287 (76%), Gaps = 9/287 (3%)

Query: 1   MATCISTCF------SPSHTCISKETQISGASLVKILDYRSDSWGACLRNVKDFPRFKCS 54
           MAT  S CF      SPS    +   +IS   +  +   +   W    +  + +P FKCS
Sbjct: 1   MATSTSPCFTPYDIQSPSRVMTTFGGRISPMKM-NLFHEKKVFWVFDQKGSRIYPHFKCS 59

Query: 55  AKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKE--GLGESVSESLRQSSVPNNN 112
             +HNV+ + SKDPFL+LHPE+S+L GDG N L  S  +  G G SV+ESLR SS  NN 
Sbjct: 60  TNSHNVNQHQSKDPFLNLHPEISLLRGDGNNTLVDSRVDTAGSGRSVTESLRDSSSSNNY 119

Query: 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
           +EAKIKV+GVGGGGSNAVNRMIES+M GVEFWIVNTD QA+K+SPV  ENRLQIG ELTR
Sbjct: 120 SEAKIKVVGVGGGGSNAVNRMIESAMKGVEFWIVNTDVQAIKMSPVYLENRLQIGQELTR 179

Query: 173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL 232
           GLGAGGNP +GMNAA ESK AIEEA+ GADM+FVTAGMGGGTGTG APVIAGIAKSMGIL
Sbjct: 180 GLGAGGNPDIGMNAAKESKEAIEEAVYGADMVFVTAGMGGGTGTGGAPVIAGIAKSMGIL 239

Query: 233 TVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           TVGI T PF FEGRRRA+QAQEG+A LR+NVDTLIVIPNDKLLTAVS
Sbjct: 240 TVGIVTTPFSFEGRRRAVQAQEGIAALRDNVDTLIVIPNDKLLTAVS 286

Source: Gentiana lutea

Species: Gentiana lutea

Genus: Gentiana

Family: Gentianaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575683|ref|XP_002528741.1| Cell division protein ftsZ, putative [Ricinus communis] gi|223531835|gb|EEF33653.1| Cell division protein ftsZ, putative [Ricinus communis]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 190/291 (65%), Positives = 222/291 (76%), Gaps = 14/291 (4%)

Query: 1   MATCISTCFSPSHTC------------ISKETQISGASLVKILDYRSDSWGACLRNVKDF 48
           MA C+S   +PS T             ++ E  +     +K+ D ++   GA  +   +F
Sbjct: 1   MAACVSPYCTPSDTRNPMGMLTVLGGRLAVENHLGRVGSLKLSDDKNRFLGANQK--ANF 58

Query: 49  PRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSV 108
             FKCSAK+H+VSP  +KDPFLDLHPE+SML G+G N +    K+ L  +V++SL   S 
Sbjct: 59  SHFKCSAKSHSVSPYPNKDPFLDLHPEISMLRGEGNNTVTTPKKDNLSGTVTDSLGHESS 118

Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
           PNN NEAKIKVIGVGGGGSNAVNRMIES+M GVEFWIVNTD QAMK+SPV PENRLQIG 
Sbjct: 119 PNNYNEAKIKVIGVGGGGSNAVNRMIESAMKGVEFWIVNTDVQAMKMSPVFPENRLQIGQ 178

Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
           ELTRGLGAGGNP +GMNAA ESK AIEEA+ G+DM+FVTAGMGGGTGTG APVIA +AKS
Sbjct: 179 ELTRGLGAGGNPEIGMNAAKESKEAIEEALYGSDMVFVTAGMGGGTGTGGAPVIASVAKS 238

Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           MGILTVGI T PF FEGRRRA+QAQEG+A LR++VDTLIVIPNDKLLTAVS
Sbjct: 239 MGILTVGIVTTPFSFEGRRRAVQAQEGIAALRDSVDTLIVIPNDKLLTAVS 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565619|ref|XP_002523799.1| Cell division protein ftsZ, putative [Ricinus communis] gi|223536887|gb|EEF38525.1| Cell division protein ftsZ, putative [Ricinus communis]

 Score =  310 bits (793), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 190/287 (66%), Positives = 215/287 (74%), Gaps = 13/287 (4%)

Query: 5   ISTCFSPSHTC------------ISKETQISGASLVKILDYRSDSWGACLRNVKDFPRFK 52
           ++TC SP H C            ISK TQ S     KI   +S +  AC +    FP+ K
Sbjct: 1   MATCISP-HFCVPVDLQILFGERISKATQTSRLISSKISYKKSGACHACQKTGLSFPQIK 59

Query: 53  CSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNN 112
           CS  +HNVSPN+SKD F DLHPEVSML G   ++  G  KE    + +   R SS+  N+
Sbjct: 60  CSINSHNVSPNNSKDTFSDLHPEVSMLRGKEDDLYSGWRKERSEGNTTRESRDSSISRNS 119

Query: 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
           +EAKIKVIGVGGGGSNAVNRMIESSMTGVEFW+VNTD QAMK S V PENRLQIG ELTR
Sbjct: 120 DEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWVVNTDIQAMKTSLVFPENRLQIGKELTR 179

Query: 173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL 232
           GLGAGG P VG NAANESK+AIEEA+SGADM+FVTAGMGGGTGTG APV+AGI+KS+G+L
Sbjct: 180 GLGAGGKPDVGKNAANESKLAIEEALSGADMVFVTAGMGGGTGTGGAPVVAGISKSLGLL 239

Query: 233 TVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           TVGI T PF FEGR+R IQAQEG+A LRNNVDTLIVIPNDKLL AVS
Sbjct: 240 TVGIVTTPFSFEGRKRTIQAQEGIAALRNNVDTLIVIPNDKLLAAVS 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827101|ref|XP_002881433.1| hypothetical protein ARALYDRAFT_902736 [Arabidopsis lyrata subsp. lyrata] gi|297327272|gb|EFH57692.1| hypothetical protein ARALYDRAFT_902736 [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/291 (61%), Positives = 216/291 (74%), Gaps = 19/291 (6%)

Query: 1   MATCISTCFSPSH----TCISK----ETQISGASLVKILDYRSDSWGACLRNVKDFPRFK 52
           MAT +S CF+PS     T + K    E  +   + +++++ + +   A           K
Sbjct: 1   MATYVSPCFTPSDSRLLTVLRKNVLPENHLGRVNSIRMIESKKNRLVAAAAQ-------K 53

Query: 53  CSAKAHNVSPNH----SKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSV 108
             +     SP H    ++DPFL+LHPE+SML G+GT+ +    KE     V+E   + S 
Sbjct: 54  SESSPIRNSPRHFQSQAQDPFLNLHPEISMLRGEGTSTIVNPRKETSSGPVTEDFEEPSA 113

Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
           P+N NEA+IKVIGVGGGGSNAVNRMIES M+GVEFWIVNTD QAM++SPV+P+NRLQIG 
Sbjct: 114 PSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIGK 173

Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
           ELTRGLGAGGNP +GMNAA ESK  IEEA+ G+DM+FVTAGMGGGTGTGAAPVIAGIAK+
Sbjct: 174 ELTRGLGAGGNPEIGMNAARESKEVIEEALYGSDMVFVTAGMGGGTGTGAAPVIAGIAKA 233

Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           MGILTVGIAT PF FEGRRR +QAQEG+A+LR+NVDTLIVIPNDKLLTAVS
Sbjct: 234 MGILTVGIATTPFSFEGRRRTVQAQEGLASLRDNVDTLIVIPNDKLLTAVS 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378750401|gb|AFC37492.1| FtsZ2 protein [Manihot esculenta]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/291 (63%), Positives = 215/291 (73%), Gaps = 14/291 (4%)

Query: 1   MATCISTCFSPSHTC------------ISKETQISGASLVKILDYRSDSWGACLRNVKDF 48
           MA C+S   +PS T             +  E  +     +KI D ++    A  R+  +F
Sbjct: 1   MAACVSPYCTPSDTINPMGMLTVLGGRVKMENHLGRIGSLKISDDKNRYLDASQRS--NF 58

Query: 49  PRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSV 108
             FKC  K+H+VSP H+KD FLDLHPE+SML G+G N      K+    +V++   + S 
Sbjct: 59  SYFKCLVKSHSVSPYHNKDSFLDLHPEISMLRGEGNNTATTPRKDTSSGTVTDRFGKESS 118

Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
           P+N +EAKIKVIGVGGGGSNAVNRMIES+M GVEFWIVNTD QAMK+ PV PENRLQIG 
Sbjct: 119 PSNYSEAKIKVIGVGGGGSNAVNRMIESAMKGVEFWIVNTDVQAMKMFPVFPENRLQIGQ 178

Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
           ELTRGLGAGGNP +GMNAA ESKVAIEEA+ G+DM+FVTAGMGGGTGTG APVIA +AKS
Sbjct: 179 ELTRGLGAGGNPEIGMNAAKESKVAIEEALYGSDMVFVTAGMGGGTGTGGAPVIANVAKS 238

Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           MGILTVGI T PF FEGRR A+QAQEG+A LR+NVDTLIVIPNDKLLTAVS
Sbjct: 239 MGILTVGIVTTPFSFEGRRGAVQAQEGIAALRDNVDTLIVIPNDKLLTAVS 289

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404086|ref|NP_565839.1| Tubulin/FtsZ-like protein [Arabidopsis thaliana] gi|42571077|ref|NP_973612.1| Tubulin/FtsZ-like protein [Arabidopsis thaliana] gi|75220266|sp|O82533.2|FTZ21_ARATH RecName: Full=Cell division protein FtsZ homolog 2-1, chloroplastic; Short=AtFtsZ2-1; AltName: Full=Plastid division protein FTSZ2-1; Flags: Precursor gi|14195704|gb|AAC35987.2| plastid division protein FtsZ [Arabidopsis thaliana] gi|15292821|gb|AAK92779.1| putative plastid division protein FtsZ [Arabidopsis thaliana] gi|15636809|dbj|BAB68127.1| chloroplast division protein AtFtsZ2-1 [Arabidopsis thaliana] gi|20197938|gb|AAD21440.2| plastid division protein (FtsZ) [Arabidopsis thaliana] gi|20259559|gb|AAM14122.1| putative plastid division FtsZ protein [Arabidopsis thaliana] gi|330254127|gb|AEC09221.1| Tubulin/FtsZ-like protein [Arabidopsis thaliana] gi|330254128|gb|AEC09222.1| Tubulin/FtsZ-like protein [Arabidopsis thaliana]

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/287 (61%), Positives = 216/287 (75%), Gaps = 12/287 (4%)

Query: 1   MATCISTCFSPSH----TCISK----ETQISGASLVKILDYRSDSWGACLRNVKDFPRFK 52
           MAT +S CF+PS     T + K    E  +   + ++ +D + +      +  +  P  +
Sbjct: 1   MATYVSPCFTPSDSRLLTVLRKNVLPENHLGRLNSIRTIDSKKNRVVVAAQKSESSP-IR 59

Query: 53  CSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNN 112
            S + +    + ++DPFL+LHPE+SML G+GT+ +    KE     V E   + S P+N 
Sbjct: 60  NSPRHYQ---SQAQDPFLNLHPEISMLRGEGTSTIVNPRKETSSGPVVEDFEEPSAPSNY 116

Query: 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
           NEA+IKVIGVGGGGSNAVNRMIES M+GVEFWIVNTD QAM++SPV+P+NRLQIG ELTR
Sbjct: 117 NEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIGKELTR 176

Query: 173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL 232
           GLGAGGNP +GMNAA ESK  IEEA+ G+DM+FVTAGMGGGTGTGAAPVIAGIAK+MGIL
Sbjct: 177 GLGAGGNPEIGMNAARESKEVIEEALYGSDMVFVTAGMGGGTGTGAAPVIAGIAKAMGIL 236

Query: 233 TVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           TVGIAT PF FEGRRR +QAQEG+A+LR+NVDTLIVIPNDKLLTAVS
Sbjct: 237 TVGIATTPFSFEGRRRTVQAQEGLASLRDNVDTLIVIPNDKLLTAVS 283

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14787784|emb|CAC44257.1| FtsZ-like protein [Nicotiana tabacum]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 185/282 (65%), Positives = 210/282 (74%), Gaps = 13/282 (4%)

Query: 1   MATCISTCFSPSHTCISK-ETQISGASL--VKILDYRSDSWGACLRNVKDFPRFKCSAKA 57
           MATC S  F P  T  S+    I G  L  +K+ D +    G   +     P+FKCSA +
Sbjct: 1   MATCTSAVFMPPDTRRSRGALTILGGRLCALKMQDEKIGFLGVNQKGSSSLPQFKCSANS 60

Query: 58  HNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNNNEAKI 117
           H+V+   +KD FL+LHPE+S+L G+          E    +V+ESL  SS  NN NEAKI
Sbjct: 61  HSVNQYQNKDSFLNLHPEISLLRGE----------ESSSGNVTESLMDSSRSNNFNEAKI 110

Query: 118 KVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAG 177
           KV+GVGGGGSNAVNRMIESSM GVEFWIVNTD QAM++SPV  E RL IG ELTRGLGAG
Sbjct: 111 KVVGVGGGGSNAVNRMIESSMKGVEFWIVNTDIQAMRMSPVAAEQRLPIGQELTRGLGAG 170

Query: 178 GNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA 237
           GNP +GMNAANESK AIEEA+ GADM+FVTAGMGGGTGTGAAP+IAG AKSMGILTVGI 
Sbjct: 171 GNPDIGMNAANESKQAIEEAVYGADMVFVTAGMGGGTGTGAAPIIAGTAKSMGILTVGIV 230

Query: 238 TVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           T PF FEGRRRA+QAQEG+A LR NVDTLIVIPNDKLLTAVS
Sbjct: 231 TTPFSFEGRRRAVQAQEGIAALRENVDTLIVIPNDKLLTAVS 272

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2049455	478	FTSZ2-1 [Arabidopsis thaliana	0.985	0.575	0.505	1.7e-66
TAIR|locus:2083258	473	FTSZ2-2 [Arabidopsis thaliana	0.777	0.458	0.575	1e-59
TIGR_CMR|BA_4045	386	BA_4045 "cell division protein	0.537	0.388	0.532	9.2e-36
UNIPROTKB|P17865	382	ftsZ "Cell division protein Ft	0.537	0.392	0.513	8.3e-35
TIGR_CMR|CHY_2060	352	CHY_2060 "cell division protei	0.537	0.426	0.5	1.3e-34
UNIPROTKB|P73456	430	ftsZ "Cell division protein Ft	0.534	0.346	0.496	4.6e-34
TAIR|locus:2161610	433	FTSZ1-1 "homolog of bacterial	0.526	0.339	0.503	8.5e-33
UNIPROTKB|P64170	379	ftsZ "Cell division protein Ft	0.523	0.385	0.486	9.8e-32
UNIPROTKB|P0A9A6	383	ftsZ [Escherichia coli K-12 (t	0.577	0.420	0.423	1e-29
TIGR_CMR|DET_0636	376	DET_0636 "cell division protei	0.537	0.398	0.447	3.4e-29

TAIR|locus:2049455 FTSZ2-1 [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 145/287 (50%), Positives = 184/287 (64%)

Query:     1 MATCISTCFSPSH----TCISK----ETQISGASLVKILDYRSDSWGACLRNVKDFPRFK 52
             MAT +S CF+PS     T + K    E  +   + ++ +D + +      +  +  P  +
Sbjct:     1 MATYVSPCFTPSDSRLLTVLRKNVLPENHLGRLNSIRTIDSKKNRVVVAAQKSESSP-IR 59

Query:    53 CSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNN 112
              S + +    + ++DPFL+LHPE+SML G+GT+ +    KE     V E   + S P+N 
Sbjct:    60 NSPRHYQ---SQAQDPFLNLHPEISMLRGEGTSTIVNPRKETSSGPVVEDFEEPSAPSNY 116

Query:   113 NEAXXXXXXXXXXXSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
             NEA           SNAVNRMIES M+GVEFWIVNTD QAM++SPV+P+NRLQIG ELTR
Sbjct:   117 NEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIGKELTR 176

Query:   173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGIL 232
             GLGAGGNP +GMNAA ESK  IEEA+ G+DM+F                     K+MGIL
Sbjct:   177 GLGAGGNPEIGMNAARESKEVIEEALYGSDMVFVTAGMGGGTGTGAAPVIAGIAKAMGIL 236

Query:   233 TVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
             TVGIAT PF FEGRRR +QAQEG+A+LR+NVDTLIVIPNDKLLTAVS
Sbjct:   237 TVGIATTPFSFEGRRRTVQAQEGLASLRDNVDTLIVIPNDKLLTAVS 283

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2083258 FTSZ2-2 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 130/226 (57%), Positives = 151/226 (66%)

Query:    54 SAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNNN 113
             S  +H+ S   S+D FL+LHPE+SML+           KE     ++E L + S PN  N
Sbjct:    63 SLNSHSTSHFQSQDSFLNLHPEISMLN---------PRKETSSVPITEDLDELSTPNTYN 113

Query:   114 EAXXXXXXXXXXXSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRG 173
             EA           SNAVNRMIES M GVEFWIVNTD QAM++SPV P+NRLQIG ELTRG
Sbjct:   114 EARIKVIGVGGGGSNAVNRMIESEMIGVEFWIVNTDIQAMRISPVFPDNRLQIGKELTRG 173

Query:   174 LGAGGNPSVGMNAANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILT 233
             LGAGGNP +GMNAA ESK AI+EA+ G+DM+F                     K+MGILT
Sbjct:   174 LGAGGNPEIGMNAATESKEAIQEALYGSDMVFVTAGMGGGTGTGGAPIIAGVAKAMGILT 233

Query:   234 VGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
             VGI T PF FEGRRRA+QAQEG+A LR+NVDTLIVIPNDKLL AVS
Sbjct:   234 VGIVTTPFSFEGRRRALQAQEGIAALRDNVDTLIVIPNDKLLAAVS 279

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|BA_4045 BA_4045 "cell division protein FtsZ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 81/152 (53%), Positives = 98/152 (64%)

Query:   127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
             +NAVNRMIE  + GV+F  VNTDAQA+ +S    E ++QIG +LTRGLGAG NP VG  A
Sbjct:    24 NNAVNRMIEHGVQGVDFIAVNTDAQALNLSKA--ETKMQIGGKLTRGLGAGANPEVGKKA 81

Query:   187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
             A ESK  I+EA+ GADM+F                     K +G LTVG+ T PF FEGR
Sbjct:    82 AEESKEQIQEALRGADMVFVTAGMGGGTGTGAAPVVAQVAKELGALTVGVVTRPFTFEGR 141

Query:   247 RRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
             +RA QA  G+A  + NVDTLIVIPND+LL  V
Sbjct:   142 KRATQAASGIAAFKENVDTLIVIPNDRLLEIV 173

GO:0000910 "cytokinesis" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

UNIPROTKB|P17865 ftsZ "Cell division protein FtsZ" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 78/152 (51%), Positives = 99/152 (65%)

Query:   127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
             +NAVNRMIE+ + GVE+  VNTDAQA+ +S    E ++QIG +LTRGLGAG NP VG  A
Sbjct:    24 NNAVNRMIENEVQGVEYIAVNTDAQALNLSKA--EVKMQIGAKLTRGLGAGANPEVGKKA 81

Query:   187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
             A ESK  IEEA+ GADM+F                     K +G LTVG+ T PF FEGR
Sbjct:    82 AEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGR 141

Query:   247 RRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
             +R +QA  G++ ++  VDTLIVIPND++L  V
Sbjct:   142 KRQLQAAGGISAMKEAVDTLIVIPNDRILEIV 173

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

TIGR_CMR|CHY_2060 CHY_2060 "cell division protein FtsZ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 76/152 (50%), Positives = 100/152 (65%)

Query:   127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
             SNAVNRMI S + GVEF  VNTDAQA+K+S   P  R+QIG +LT+GLGAG NP +G  A
Sbjct:    24 SNAVNRMIMSGLKGVEFIAVNTDAQALKLSKA-P-TRIQIGVKLTKGLGAGANPEIGEKA 81

Query:   187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
             A E++  +  A+ GADM+F                     K +G LTVG+ T PF FEG+
Sbjct:    82 AEENREDLYAALKGADMVFVTAGMGGGTGTGAAPIVAEIAKELGALTVGVVTKPFTFEGK 141

Query:   247 RRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
             +RA+QA++G+ NL++ VDTLI IPND+LL  +
Sbjct:   142 KRAMQAEKGIENLKSKVDTLITIPNDRLLQVI 173

GO:0000910 "cytokinesis" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

UNIPROTKB|P73456 ftsZ "Cell division protein FtsZ" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 75/151 (49%), Positives = 100/151 (66%)

Query:   128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
             NAVNRMI S +TG++FW +NTD+QA+  +   P+  +QIG +LTRGLGAGGNP++G  AA
Sbjct:    80 NAVNRMIASGVTGIDFWAINTDSQAL-TNTNAPDC-IQIGQKLTRGLGAGGNPAIGQKAA 137

Query:   188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
              ES+  I  ++ G D++F                     K MG LTVGI T PF FEGRR
Sbjct:   138 EESRDEIARSLEGTDLVFITAGMGGGTGTGAAPIVAEVAKEMGCLTVGIVTRPFTFEGRR 197

Query:   248 RAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
             RA QA+EG+  L++ VDTLIVIPN++LL+ +
Sbjct:   198 RAKQAEEGINALQSRVDTLIVIPNNQLLSVI 228

GO:0000917 "barrier septum assembly" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0051258 "protein polymerization" evidence=IDA

TAIR|locus:2161610 FTSZ1-1 "homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 75/149 (50%), Positives = 94/149 (63%)

Query:   127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
             +NAVNRMI S +  V+F+ +NTD+QA+  S    EN LQIG  LTRGLG GGNP +G  A
Sbjct:    86 NNAVNRMISSGLQSVDFYAINTDSQALLQSSA--ENPLQIGELLTRGLGTGGNPLLGEQA 143

Query:   187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
             A ESK AI  A+ G+D++F                     K  G LTVG+ T PF FEGR
Sbjct:   144 AEESKDAIANALKGSDLVFITAGMGGGTGSGAAPVVAQISKDAGYLTVGVVTYPFSFEGR 203

Query:   247 RRAIQAQEGVANLRNNVDTLIVIPNDKLL 275
             +R++QA E +  L+ NVDTLIVIPND+LL
Sbjct:   204 KRSLQALEAIEKLQKNVDTLIVIPNDRLL 232

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009637 "response to blue light" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0043572 "plastid fission" evidence=IMP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0010020 "chloroplast fission" evidence=IMP

UNIPROTKB|P64170 ftsZ "Cell division protein FtsZ" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 72/148 (48%), Positives = 94/148 (63%)

Query:   128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
             NAVNRMIE  + GVEF  +NTDAQA+ +S    + +L +G + TRGLGAG +P VG  AA
Sbjct:    22 NAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGLGAGADPEVGRKAA 79

Query:   188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
              ++K  IEE + GADM+F                     + +G LTVG+ T PF FEG+R
Sbjct:    80 EDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKR 139

Query:   248 RAIQAQEGVANLRNNVDTLIVIPNDKLL 275
             R+ QA+ G+A LR + DTLIVIPND+LL
Sbjct:   140 RSNQAENGIAALRESCDTLIVIPNDRLL 167

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0000917 "barrier septum assembly" evidence=IMP

GO:0003924 "GTPase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0007049 "cell cycle" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0051258 "protein polymerization" evidence=IDA

UNIPROTKB|P0A9A6 ftsZ [Escherichia coli K-12 (taxid:83333)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 69/163 (42%), Positives = 93/163 (57%)

Query:   113 NEAXXXXXXXXXXXSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
             N+A            NAV  M+   + GVEF+ VNTDAQA++ + V     +QIG  +T+
Sbjct:     9 NDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAV--GQTIQIGSGITK 66

Query:   173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGIL 232
             GLGAG NP VG NAA+E + A+  A+ GADM+F                     K +GIL
Sbjct:    67 GLGAGANPEVGRNAADEDRDALRAALEGADMVFIAAGMGGGTGTGAAPVVAEVAKDLGIL 126

Query:   233 TVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLL 275
             TV + T PF FEG++R   A++G+  L  +VD+LI IPNDKLL
Sbjct:   127 TVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLL 169

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0051258 "protein polymerization" evidence=IEA;IDA

GO:0032155 "cell division site part" evidence=IDA

GO:0051301 "cell division" evidence=IEA;IMP

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

TIGR_CMR|DET_0636 DET_0636 "cell division protein FtsZ" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 68/152 (44%), Positives = 90/152 (59%)

Query:   127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
             SNAV RM+  ++ GVEF  VNTDAQ + ++      R+QIG   TRGLGAGGN ++G  A
Sbjct:    23 SNAVTRMVRDNIQGVEFIAVNTDAQHLAITEAA--TRIQIGERCTRGLGAGGNHTMGKAA 80

Query:   187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
             A ES   ++E + GADM+F                     K  G LT+ + T PFCFEG 
Sbjct:    81 AEESMSELKENVIGADMVFVTAGMGGGTGTGSAPVVAKIAKESGALTIAVCTKPFCFEGA 140

Query:   247 RRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
              R   A+EG+ N+ ++VDTLI+IPND+LL  V
Sbjct:   141 HRMQTAEEGINNIVDSVDTLIIIPNDRLLDMV 172

GO:0000910 "cytokinesis" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0066013202	hypothetical protein (477 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.V.5360.1	hypothetical protein (363 aa)	•						•		0.900
	gw1.XII.1867.1	hypothetical protein (402 aa)	•						•		0.898
	gw1.XI.2542.1	hypothetical protein (325 aa)	•		•				•		0.846
	fgenesh4_pg.C_LG_I000919	hypothetical protein (777 aa)	•			•			•		0.833
	eugene3.149220001	Predicted protein (326 aa)	•						•		0.831
	eugene3.195680001	Predicted protein (212 aa)	•						•		0.774
	eugene3.205270002	Predicted protein (127 aa)	•						•		0.738
	fgenesh4_pg.C_scaffold_18231000001	Predicted protein (286 aa)					•		•		0.728
	fgenesh4_pg.C_scaffold_2755000002	Predicted protein (247 aa)	•						•		0.715
	fgenesh4_pg.C_scaffold_10565000001	Predicted protein (327 aa)							•		0.605

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PRK09330	384	PRK09330, PRK09330, cell division protein FtsZ; Va	1e-102
cd02201	304	cd02201, FtsZ_type1, FtsZ is a GTPase that is simi	7e-94
TIGR00065	349	TIGR00065, ftsZ, cell division protein FtsZ	4e-79
PRK13018	378	PRK13018, PRK13018, cell division protein FtsZ; Pr	9e-76
COG0206	338	COG0206, FtsZ, Cell division GTPase [Cell division	1e-72
smart00864	192	smart00864, Tubulin, Tubulin/FtsZ family, GTPase d	4e-70
cd02191	303	cd02191, FtsZ, FtsZ is a GTPase that is similar to	1e-55
pfam00091	210	pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do	2e-42
cd02202	349	cd02202, FtsZ_type2, FtsZ is a GTPase that is simi	1e-20
cd00286	328	cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ	3e-14

>gnl|CDD|236468 PRK09330, PRK09330, cell division protein FtsZ; Validated

 Score =  302 bits (775), Expect = e-102
 Identities = 108/169 (63%), Positives = 126/169 (74%), Gaps = 2/169 (1%)

Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
             N  A IKVIGVGGGG NAVNRMIE  + GVEF   NTDAQA+  S      ++Q+G +
Sbjct: 9   EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKA--PVKIQLGEK 66

Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
           LTRGLGAG NP VG  AA ES+  I EA+ GADM+F+TAGMGGGTGTGAAPV+A IAK +
Sbjct: 67  LTRGLGAGANPEVGRKAAEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKEL 126

Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
           GILTV + T PF FEG++R  QA+EG+  LR +VDTLIVIPNDKLL  V
Sbjct: 127 GILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVV 175

Length = 384

>gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

 Score =  278 bits (714), Expect = 7e-94
 Identities = 112/164 (68%), Positives = 129/164 (78%), Gaps = 2/164 (1%)

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           AKIKVIGVGGGG NAVNRMIES + GVEF   NTDAQA+  S     N++Q+G ELTRGL
Sbjct: 1   AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKA--PNKIQLGKELTRGL 58

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAGG+P VG  AA ES+  I+EA+ GADM+F+TAGMGGGTGTGAAPVIA IAK MG LTV
Sbjct: 59  GAGGDPEVGRKAAEESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTV 118

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            + T PF FEG++R  QA+EG+  LR +VDTLIVIPNDKLL  V
Sbjct: 119 AVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVV 162

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. Length = 304

>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ

 Score =  242 bits (620), Expect = 4e-79
 Identities = 101/169 (59%), Positives = 127/169 (75%), Gaps = 2/169 (1%)

Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
             +N+AKIKVIGVGGGG+N VNRM+E  + GVEF  +NTDAQ +K +    + ++ IG +
Sbjct: 13  QPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKA--DKKILIGKK 70

Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
           LTRGLGAGGNP +G  AA ES+  I + + GADM+F+TAGMGGGTGTGAAPV+A IAK +
Sbjct: 71  LTRGLGAGGNPEIGRKAAEESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKEL 130

Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
           G LTV + T PF FEG +R  +A+EG+  L+  VDTLIVIPNDKLL  V
Sbjct: 131 GALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVV 179

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis [Cellular processes, Cell division]. Length = 349

>gnl|CDD|237273 PRK13018, PRK13018, cell division protein FtsZ; Provisional

 Score =  234 bits (600), Expect = 9e-76
 Identities = 93/187 (49%), Positives = 123/187 (65%), Gaps = 2/187 (1%)

Query: 92  KEGLGESVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151
           KE L +S  E   + +  ++    KI V+G GG G+N +NR+ E  + G E   +NTDAQ
Sbjct: 6   KEALIDSEQEKEEKKASDDDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQ 65

Query: 152 AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMG 211
            + +     + ++ IG  LTRGLGAGG+P VG  AA ES+  I+E + GAD++FVTAGMG
Sbjct: 66  HLAMIKA--DKKILIGKSLTRGLGAGGDPEVGRKAAEESRDEIKEVLKGADLVFVTAGMG 123

Query: 212 GGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271
           GGTGTGAAPV+A IAK  G L VG+ T PF FEGR R  +A+EG+  LR   DT+IVI N
Sbjct: 124 GGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDN 183

Query: 272 DKLLTAV 278
           ++LL  V
Sbjct: 184 NRLLDIV 190

Length = 378

>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome partitioning]

 Score =  225 bits (576), Expect = 1e-72
 Identities = 106/170 (62%), Positives = 124/170 (72%), Gaps = 2/170 (1%)

Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
           P  + +A+IKVIGVGG G NAVNRMIE  + GVEF  +NTDAQA+K S    + ++ IG 
Sbjct: 6   PEESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSKA--DRKILIGE 63

Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
            +TRGLGAG NP VG  AA ES   IEEA+ GADM+FVTAGMGGGTGTGAAPV+A IAK 
Sbjct: 64  SITRGLGAGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKE 123

Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
           +G LTV + T+PF FEG  R   A+EG+  LR  VDTLIVIPNDKLL   
Sbjct: 124 LGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGK 173

Length = 338

>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain

 Score =  214 bits (547), Expect = 4e-70
 Identities = 89/160 (55%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLG 175
           KIKV GVGGGG NAVN  +E     ++    NTDAQA+    +    ++Q G   TRGLG
Sbjct: 1   KIKVFGVGGGGPNAVNVDLEP--GVIDGVRANTDAQALNPESLAS-GKIQAGNNWTRGLG 57

Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
           AG +P VG  AA ES   I E + GAD +F+TAGMGGGTGTGAAPVIA IAK  GILTV 
Sbjct: 58  AGADPEVGREAAEESLDEIREELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVA 117

Query: 236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLL 275
           + T PF FEG  R   A+ G+  LR +VD+LIVI ND LL
Sbjct: 118 VVTKPFSFEGVVRPYNAELGLEELREHVDSLIVIDNDALL 157

This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. Length = 192

>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

 Score =  181 bits (460), Expect = 1e-55
 Identities = 79/164 (48%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           AKI VIG GG G N V++ +E    G     VNTDAQ +    +  ENR+ IG   T+GL
Sbjct: 1   AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLL--GLEAENRVLIGQARTKGL 58

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAG NP +G  AA E + AI+      DM+F+TAG+GGGTGTG APV+A   K +G LTV
Sbjct: 59  GAGANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTV 118

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            + T+PF  EG  R + A EG   L   VD L+VIPN+KL    
Sbjct: 119 AVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIG 162

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. Length = 303

>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain

 Score =  143 bits (364), Expect = 2e-42
 Identities = 77/196 (39%), Positives = 97/196 (49%), Gaps = 39/196 (19%)

Query: 117 IKVIGVGGGGSNAVNRMIE----------------------------SSMTGVEFWIVNT 148
           I VIGVGG G+N  N + E                              + G  F  ++T
Sbjct: 1   IIVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHADKINVFFEESGDGVYGPRFIAIDT 60

Query: 149 DAQAMKVSPVIPENRLQIGCELTRGL-GAGGNPSVGMN----AANESKVAIEEAI---SG 200
           D Q +        N+L IG  LT+GL GAG NP+VG      AA ES   I + +    G
Sbjct: 61  DPQVLNEIKAG--NKLFIGNNLTKGLEGAGNNPAVGYYTHKEAAEESLEEIRKELEKCDG 118

Query: 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSM-GILTVGIATVPFCFEGRRRAIQAQEGVANL 259
            D  F+TAG+GGGTG+GAAPVIA I K + G LTV + T PF  EG  R   A  G+  L
Sbjct: 119 LDGFFITAGLGGGTGSGAAPVIAEILKELYGALTVAVVTFPFTSEGVVRPYNAILGLKEL 178

Query: 260 RNNVDTLIVIPNDKLL 275
             + D++IVI ND LL
Sbjct: 179 IEHSDSVIVIDNDALL 194

This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. Length = 210

>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 12/173 (6%)

Query: 116 KIKVIGVGGGGSNAVNRMIESSMTG-----VEFWIVNTDAQAMKVSPVIP-ENRLQIGCE 169
           ++ +IGVG  G   V+ +            V    +NT    +K    IP E+R+ IG  
Sbjct: 2   RVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQS 61

Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAI-----SGADMIFVTAGMGGGTGTGAAPVIAG 224
             +G G G +  +G   A E    +  AI     S AD I V AG+GGGTG+G APV+A 
Sbjct: 62  EVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAK 121

Query: 225 IAKSM-GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLT 276
             K         +  +P   EG R +  A   +  L    D +I+  ND    
Sbjct: 122 ELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKR 174

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. Length = 349

>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 26/176 (14%)

Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFW----IVNTDAQAMKVSPVIP-ENRLQIGCEL 170
           +I  I +G  G+            G +FW    +V+T+   +  +   P      IG  +
Sbjct: 1   EIVTIQLGQAGNQ----------IGAKFWEQLVLVDTEPGVIDETLSGPYRLLFCIGQLI 50

Query: 171 TRGLGAGGNPSVGMNAANESKV-AIEEAI-------SGADMIFVTAGMGGGTGTGAAPVI 222
           T G GAG N + G   A E     I + I             F+T  +GGGTG+G  PV+
Sbjct: 51  THGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVL 110

Query: 223 AGIAKSM--GILTVGIATVPFCFEGRR-RAIQAQEGVANLRNNVDTLIVIPNDKLL 275
           A   K      L +  + +P   EG   R   +   +  L  + D L+VI N+ L 
Sbjct: 111 AERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCLVVIDNEALF 166

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts. Length = 328

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
PRK09330	384	cell division protein FtsZ; Validated	100.0
PRK13018	378	cell division protein FtsZ; Provisional	100.0
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	100.0
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	100.0
cd02191	303	FtsZ FtsZ is a GTPase that is similar to the eukar	100.0
COG0206	338	FtsZ Cell division GTPase [Cell division and chrom	100.0
cd02202	349	FtsZ_type2 FtsZ is a GTPase that is similar to the	100.0
smart00864	192	Tubulin Tubulin/FtsZ family, GTPase domain. This d	100.0
PF00091	216	Tubulin: Tubulin/FtsZ family, GTPase domain; Inter	100.0
cd00286	328	Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin	99.96
cd06059	382	Tubulin The tubulin superfamily includes five dist	99.91
cd02190	379	epsilon_tubulin The tubulin superfamily includes f	99.87
PTZ00387	465	epsilon tubulin; Provisional	99.84
cd02187	425	beta_tubulin The tubulin superfamily includes five	99.84
PLN00220	447	tubulin beta chain; Provisional	99.83
cd02186	434	alpha_tubulin The tubulin superfamily includes fiv	99.82
COG5023	443	Tubulin [Cytoskeleton]	99.82
cd02189	446	delta_tubulin The tubulin superfamily includes fiv	99.82
PTZ00335	448	tubulin alpha chain; Provisional	99.82
cd02188	431	gamma_tubulin Gamma-tubulin is a ubiquitous phylog	99.81
PLN00222	454	tubulin gamma chain; Provisional	99.8
PTZ00010	445	tubulin beta chain; Provisional	99.79
PLN00221	450	tubulin alpha chain; Provisional	99.79
KOG1374	448	consensus Gamma tubulin [Cytoskeleton]	99.58
PF13809	345	Tubulin_2: Tubulin like	99.25
KOG1376	407	consensus Alpha tubulin [Cytoskeleton]	98.57
KOG1375	369	consensus Beta tubulin [Cytoskeleton]	98.47
cd06060	493	misato Human Misato shows similarity with Tubulin/	98.42
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.46
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.46
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.08
PRK06153	393	hypothetical protein; Provisional	94.8
PF14881	180	Tubulin_3: Tubulin domain	94.78
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.75
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.58
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.4
PRK05086	312	malate dehydrogenase; Provisional	94.17
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.11
PRK06223	307	malate dehydrogenase; Reviewed	93.92
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.87
PRK08328	231	hypothetical protein; Provisional	93.77
PRK10886	196	DnaA initiator-associating protein DiaA; Provision	93.64
PTZ00117	319	malate dehydrogenase; Provisional	93.23
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	93.07
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.04
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	92.86
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	92.62
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	92.58
PRK08223	287	hypothetical protein; Validated	92.31
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	91.86
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	91.51
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.3
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.9
PRK09496	453	trkA potassium transporter peripheral membrane com	90.69
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	90.68
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.66
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	90.53
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	90.52
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	90.5
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.39
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	90.36
PLN00106	323	malate dehydrogenase	90.27
PRK00414	192	gmhA phosphoheptose isomerase; Reviewed	90.17
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.97
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	89.96
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	89.92
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	89.68
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	89.66
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	89.38
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	89.13
PLN02602	350	lactate dehydrogenase	88.99
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	88.69
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	88.66
TIGR00441	154	gmhA phosphoheptose isomerase. Involved in lipopol	88.41
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	88.34
PTZ00325	321	malate dehydrogenase; Provisional	88.32
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	88.16
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	88.0
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	87.98
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	87.59
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.57
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	87.44
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	87.4
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.31
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	87.12
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	86.98
PRK07411	390	hypothetical protein; Validated	86.82
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	86.75
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	86.51
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	86.28
PF06908	177	DUF1273: Protein of unknown function (DUF1273); In	86.14
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	85.97
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	85.86
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	85.85
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	85.7
PRK15116	268	sulfur acceptor protein CsdL; Provisional	85.7
PRK04148	134	hypothetical protein; Provisional	85.66
KOG1495	332	consensus Lactate dehydrogenase [Energy production	85.62
PRK13936	197	phosphoheptose isomerase; Provisional	85.47
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	85.44
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	85.11
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	84.93
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	84.91
CHL00194	317	ycf39 Ycf39; Provisional	84.7
PRK15076	431	alpha-galactosidase; Provisional	84.65
PRK00048	257	dihydrodipicolinate reductase; Provisional	84.46
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	84.4
PRK05442	326	malate dehydrogenase; Provisional	84.23
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	84.21
PRK06545	359	prephenate dehydrogenase; Validated	83.58
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	83.58
PRK09496	453	trkA potassium transporter peripheral membrane com	83.55
PRK13937	188	phosphoheptose isomerase; Provisional	83.39
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	83.13
PLN02353	473	probable UDP-glucose 6-dehydrogenase	83.0
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	82.97
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	82.82
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	82.68
PRK13938	196	phosphoheptose isomerase; Provisional	82.45
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	82.18
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	82.18
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	82.17
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	82.11
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	81.93
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	81.88
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	81.8
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.68
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	81.58
PRK14851	679	hypothetical protein; Provisional	81.54
PRK10669	558	putative cation:proton antiport protein; Provision	81.51
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	81.37
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	81.35
PRK08818	370	prephenate dehydrogenase; Provisional	81.29
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	81.15
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.15
PRK08507	275	prephenate dehydrogenase; Validated	80.96
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	80.96
PLN02688	266	pyrroline-5-carboxylate reductase	80.42
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	80.38
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	80.27
PRK13940	414	glutamyl-tRNA reductase; Provisional	80.18
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	80.16
PLN02695	370	GDP-D-mannose-3',5'-epimerase	80.09
PRK07417	279	arogenate dehydrogenase; Reviewed	80.04

>PRK09330 cell division protein FtsZ; Validated

Probab=100.00  E-value=3.8e-47  Score=366.41  Aligned_cols=165  Identities=65%  Similarity=0.998  Sum_probs=160.3

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ...++|+||||||||||+||+|++.++.+++|||+|||.++|..++  +++||+||+..|+|+|+|+||++|++++++++
T Consensus        11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~--a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~   88 (384)
T PRK09330         11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSK--APVKIQLGEKLTRGLGAGANPEVGRKAAEESR   88 (384)
T ss_pred             ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCC--CCeEEEcCCcccccCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999875  58999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN  271 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN  271 (279)
                      ++|+++|++||+|||+||||||||||++|+|++++|++++++++|||+||.|||.+|++||.++|++|++++|++|+|||
T Consensus        89 e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~N  168 (384)
T PRK09330         89 EEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPN  168 (384)
T ss_pred             HHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhh
Q 044090          272 DKLLTAV  278 (279)
Q Consensus       272 d~L~~i~  278 (279)
                      |+|++++
T Consensus       169 d~L~~~~  175 (384)
T PRK09330        169 DKLLEVV  175 (384)
T ss_pred             HHHHhhc
Confidence            9999876

>PRK13018 cell division protein FtsZ; Provisional

Probab=100.00  E-value=1.7e-45  Score=354.37  Aligned_cols=167  Identities=53%  Similarity=0.863  Sum_probs=161.2

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE  189 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e  189 (279)
                      ++...+||+||||||||+|+||+|++.+..+++|+|+|||.++|..++  +++|++||++.|+|+|+|+||++|++++++
T Consensus        24 ~~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~--a~~ki~iG~~~t~G~GaG~dp~~G~~aaee  101 (378)
T PRK13018         24 DDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIK--ADKKILIGKSLTRGLGAGGDPEVGRKAAEE  101 (378)
T ss_pred             cccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCC--CCcEEecCCccCCCCCCCCChHHHHHHHHH
Confidence            446678999999999999999999999999999999999999999875  489999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEE
Q 044090          190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVI  269 (279)
Q Consensus       190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~  269 (279)
                      +.++|++++++||+|||+||||||||||++|+|++++++++++++++||+||.+||.+|++||.++|++|++++|++|+|
T Consensus       102 ~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vivi  181 (378)
T PRK13018        102 SRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVI  181 (378)
T ss_pred             HHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             echHHHhhh
Q 044090          270 PNDKLLTAV  278 (279)
Q Consensus       270 DNd~L~~i~  278 (279)
                      |||+|+++|
T Consensus       182 dNd~L~~i~  190 (378)
T PRK13018        182 DNNRLLDIV  190 (378)
T ss_pred             ecHHHHHHH
Confidence            999999875

>TIGR00065 ftsZ cell division protein FtsZ

Probab=100.00  E-value=2.1e-45  Score=350.56  Aligned_cols=169  Identities=60%  Similarity=0.958  Sum_probs=162.7

Q ss_pred             CCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHH
Q 044090          108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA  187 (279)
Q Consensus       108 ~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa  187 (279)
                      ..++..++||+||||||||||+||+|++.++.+++|||+|||.++|..++  +++|++||++.|+|+|+|+||++|++++
T Consensus        11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~--a~~ki~iG~~~t~G~GaG~~~~~G~~~a   88 (349)
T TIGR00065        11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTK--ADKKILIGKKLTRGLGAGGNPEIGRKAA   88 (349)
T ss_pred             hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCC--CCeEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence            34566778999999999999999999999999999999999999999876  5899999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEE
Q 044090          188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI  267 (279)
Q Consensus       188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vI  267 (279)
                      ++++++|++++++||+|||+||||||||||++|+|+++++++++++++|+|+||.+|+.+|+|||.++|++|++++|++|
T Consensus        89 ee~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vi  168 (349)
T TIGR00065        89 EESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLI  168 (349)
T ss_pred             HHHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEechHHHhhh
Q 044090          268 VIPNDKLLTAV  278 (279)
Q Consensus       268 v~DNd~L~~i~  278 (279)
                      +||||+|+++|
T Consensus       169 vidNd~L~~~~  179 (349)
T TIGR00065       169 VIPNDKLLEVV  179 (349)
T ss_pred             EEeCHHHHHhh
Confidence            99999999876

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=100.00  E-value=4.1e-45  Score=341.35  Aligned_cols=162  Identities=69%  Similarity=1.047  Sum_probs=157.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      .||+||||||||||+||+|++.+.++++|||+|||.++|..++  +++|++||++.|+|+|+|+||++|++++++.+++|
T Consensus         1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~--~~~k~~ig~~~t~g~Gag~~~~~g~~~a~~~~~~I   78 (304)
T cd02201           1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSK--APNKIQLGKELTRGLGAGGDPEVGRKAAEESREEI   78 (304)
T ss_pred             CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCC--CCcEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999876  58999999999999999999999999999999999


Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHH
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKL  274 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L  274 (279)
                      ++++++||+|||+||||||||||++|+|+++++++++++++|+|+||.+|+.+|+|||.++|++|++++|.+|+||||+|
T Consensus        79 ~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L  158 (304)
T cd02201          79 KEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKL  158 (304)
T ss_pred             HHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 044090          275 LTAV  278 (279)
Q Consensus       275 ~~i~  278 (279)
                      +++|
T Consensus       159 ~~~~  162 (304)
T cd02201         159 LEVV  162 (304)
T ss_pred             HHhh
Confidence            9876

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=100.00  E-value=7.3e-45  Score=340.67  Aligned_cols=162  Identities=49%  Similarity=0.727  Sum_probs=157.7

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      +||+|||+||||+|+||+|++.+..+++|+|+|||.++|..+.  +++|+++|++.|+|+|+|+||++|++++++.+++|
T Consensus         1 ~~i~viGvGg~G~n~v~~~~~~~~~~~~~iainTd~~~L~~~~--a~~ki~iG~~~t~g~GaG~~~~~G~~~a~e~~~~I   78 (303)
T cd02191           1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLE--AENRVLIGQARTKGLGAGANPELGAEAAEEVQEAI   78 (303)
T ss_pred             CEEEEEEECchHHHHHHHHHHcCCCCccEEEEECcHHHHhcCC--CCcEEecCCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            5899999999999999999999888999999999999999875  58999999999999999999999999999999999


Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHH
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKL  274 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L  274 (279)
                      ++++++||+|||+||||||||||++|+|+++++++++++++|+|+||.+|+.+|+|||.++|++|++++|.+|+||||+|
T Consensus        79 ~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L  158 (303)
T cd02191          79 DNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKL  158 (303)
T ss_pred             HHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 044090          275 LTAV  278 (279)
Q Consensus       275 ~~i~  278 (279)
                      ++++
T Consensus       159 ~~~~  162 (303)
T cd02191         159 RQIG  162 (303)
T ss_pred             HHHh
Confidence            9876

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.6e-44  Score=342.95  Aligned_cols=166  Identities=63%  Similarity=0.957  Sum_probs=161.8

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      ....+||+|||+||||+|+||+|++.++++++|+++|||.|+|+.++  +++|++||+..|+|+|+|+||++|+++|+++
T Consensus         8 ~~~~~~I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD~q~L~~~~--a~~ki~iG~~~t~GlGaGa~P~vG~~aAee~   85 (338)
T COG0206           8 ESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSK--ADRKILIGESITRGLGAGANPEVGRAAAEES   85 (338)
T ss_pred             cccCceEEEEEeCCcchHHHHHHHHhhhCceEEEEeccCHHHHhccc--cCeEEEeccceeeccCCCCCcHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999886  4899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEe
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIP  270 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~D  270 (279)
                      +++|++.|+++|++||++|||||||||++|+|++++|+++++|++|+|+||++||.+|+.||.++|++|++++|++|+||
T Consensus        86 ~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~  165 (338)
T COG0206          86 IEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIP  165 (338)
T ss_pred             HHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhh
Q 044090          271 NDKLLTAV  278 (279)
Q Consensus       271 Nd~L~~i~  278 (279)
                      ||+|++..
T Consensus       166 Ndkll~~~  173 (338)
T COG0206         166 NDKLLKGK  173 (338)
T ss_pred             cHHHHhcc
Confidence            99999864

>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=100.00  E-value=5e-40  Score=313.27  Aligned_cols=164  Identities=30%  Similarity=0.456  Sum_probs=154.6

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCc-----ceEEEEeCcHHHHhcC-CCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTG-----VEFWIVNTDAQAMKVS-PVIPENRLQIGCELTRGLGAGGNPSVGMNAAN  188 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~-----ve~iavNTD~~~L~~s-~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~  188 (279)
                      |||+|||+||||+||||+|++.+.++     ++++++|||.++|..+ ..++++|+++|++.++|+|+|+||++|+++++
T Consensus         1 m~i~viGvGg~G~niv~~l~~~~~~~~~~~~~~~iavntD~~~L~~l~~~~~~~ki~~g~~~t~G~GaG~~~~~G~~~ae   80 (349)
T cd02202           1 MRVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELGAEVAE   80 (349)
T ss_pred             CEEEEEEeCCcHHHHHHHHHHhCCCcCCccceeEEEEECCHHHHHhhhcCCCCCEEEecCcccCCCCCCCChHHHHHHHH
Confidence            79999999999999999999988766     8999999999999865 34568999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC-----CCEEEEEeecCCCcccCHHHHHHHHHHHc-CCcEEEEEccCCCCchhHHHHHHHHHHHHHHHh
Q 044090          189 ESKVAIEEAISG-----ADMIFVTAGMGGGTGTGAAPVIAGIAKSM-GILTVGIATVPFCFEGRRRAIQAQEGVANLRNN  262 (279)
Q Consensus       189 e~~e~I~~~Le~-----~D~vfIvAGLGGGTGSG~aPvIaeiake~-gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~  262 (279)
                      +++++|++++++     +|+|||+||||||||||++|+|+++++++ ++++++++++||.+|+..++|||.++|++|+++
T Consensus        81 e~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~  160 (349)
T cd02202          81 EDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEE  160 (349)
T ss_pred             HHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCCccEEEEEEecCCCCCchhhHHHHHHHHHHHHh
Confidence            999999999987     77999999999999999999999999985 579999999999999999999999999999999


Q ss_pred             CCEEEEEechHHHhhh
Q 044090          263 VDTLIVIPNDKLLTAV  278 (279)
Q Consensus       263 aD~vIv~DNd~L~~i~  278 (279)
                      +|.+|+||||+|++++
T Consensus       161 ~D~viv~dNd~L~~~~  176 (349)
T cd02202         161 ADAIILFDNDAWKRKG  176 (349)
T ss_pred             CCEEEEEehHHHhhhc
Confidence            9999999999998865

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain

Probab=100.00  E-value=8.6e-34  Score=248.61  Aligned_cols=160  Identities=54%  Similarity=0.778  Sum_probs=149.5

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHH
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIE  195 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~  195 (279)
                      ||+|+|+|++|+|+|+.+.+.+  .++++++|||...|+.... ..+++.+|...++|+|+|+||+.|++++++.+++|+
T Consensus         1 ~i~~~g~g~~g~r~v~~d~e~~--~i~~i~~~t~~~~l~~~~~-~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir   77 (192)
T smart00864        1 KIKVFGVGGYGPNAVLVDLEPG--VVDEVRANTDAQALNPESL-ASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIR   77 (192)
T ss_pred             CeEEEEeCCchhhHHhhhcccC--CceEEEECCHHHHhCCccc-ccchhcccccccccCCCCCChHHHHHHHHHHHHHHH
Confidence            6899999999999999998764  6888999999988887322 368889999999999999999999999999999999


Q ss_pred             HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHH
Q 044090          196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLL  275 (279)
Q Consensus       196 ~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~  275 (279)
                      +++++||+|||+||||||||||++|+|++++++++..+++++++||.+|+..++|||.++|++|++++|.+|+||||+|+
T Consensus        78 ~~le~~d~~~i~~slgGGTGsG~~~~i~~~~~~~~~~~~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~  157 (192)
T smart00864       78 EELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFVFEGVVRPYNAELGLEELREHVDSLIVIDNDALL  157 (192)
T ss_pred             HHhcCCCEEEEeccCCCCccccHHHHHHHHHHHcCCcEEEEEEEeEeecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHH
Confidence            99999999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 044090          276 TAV  278 (279)
Q Consensus       276 ~i~  278 (279)
                      ++|
T Consensus       158 ~~~  160 (192)
T smart00864      158 DIC  160 (192)
T ss_pred             HHH
Confidence            876

This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.

>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins

Probab=100.00  E-value=1.3e-33  Score=251.24  Aligned_cols=163  Identities=28%  Similarity=0.408  Sum_probs=142.3

Q ss_pred             eEEEEeeCcchHHHHHHHHH-----------------------------cCCCcceEEEEeCcHHHHhcCCCCCCCeEEc
Q 044090          116 KIKVIGVGGGGSNAVNRMIE-----------------------------SSMTGVEFWIVNTDAQAMKVSPVIPENRLQI  166 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~-----------------------------~~~~~ve~iavNTD~~~L~~s~v~a~~ri~i  166 (279)
                      +|.+|||||||++|++++.+                             .+...+++++||||.+.|........++++.
T Consensus         1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~   80 (216)
T PF00091_consen    1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFD   80 (216)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHHHhhccccccccccccccccceeeeccccccccccccccccccccccccccccccccc
Confidence            58999999999999999998                             1122378899999999999854322234777


Q ss_pred             CcccccCC-CCCCCchhhHH-----HHHHHHHHHHHHh---cCCCEEEEEeecCCCcccCHHHHHHHHHHHc--CCcEEE
Q 044090          167 GCELTRGL-GAGGNPSVGMN-----AANESKVAIEEAI---SGADMIFVTAGMGGGTGTGAAPVIAGIAKSM--GILTVG  235 (279)
Q Consensus       167 G~~~t~G~-GaG~np~~G~e-----aa~e~~e~I~~~L---e~~D~vfIvAGLGGGTGSG~aPvIaeiake~--gi~tva  235 (279)
                      +...+.|. |+|+||++|+.     ++++.+++|++++   +.+|+|||++|||||||||++|+|++.+++.  ++++++
T Consensus        81 ~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~  160 (216)
T PF00091_consen   81 PNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIIS  160 (216)
T ss_dssp             GGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceee
Confidence            77766665 99999999987     8899999999999   5556999999999999999999999999986  799999


Q ss_pred             EEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       236 IvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      ++++|+.+|+..++|||.++|++|.+++|.+|+|||++|+++|
T Consensus       161 ~~ilP~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~  203 (216)
T PF00091_consen  161 FSILPFSSEGVVEPYNALLSLSELQEYADSVILFDNDALYKIC  203 (216)
T ss_dssp             EEEE-CGGGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHH
T ss_pred             ccccccccccccccceehhHHHHHHHhCCEEEEEcHHHHHHHH
Confidence            9999998899999999999999999999999999999999886

These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....

>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

Probab=99.96  E-value=6.6e-29  Score=233.00  Aligned_cols=157  Identities=29%  Similarity=0.386  Sum_probs=135.3

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCC-CCeEEcCcccccCCCCCCCchhhHHHH-----HH
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIP-ENRLQIGCELTRGLGAGGNPSVGMNAA-----NE  189 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a-~~ri~iG~~~t~G~GaG~np~~G~eaa-----~e  189 (279)
                      +|++||+||||++|++++.+..      ++||||.+.|....... .+.+.++...+++.|+|+||++|+.++     ++
T Consensus         1 eii~i~iG~~G~~i~~~~~~~~------v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~   74 (328)
T cd00286           1 EIVTIQLGQAGNQIGAKFWEQL------VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEE   74 (328)
T ss_pred             CeEEEecCccHhHHHHHHHHhh------heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHHHH
Confidence            4899999999999999998863      89999999988754322 233456777788899999999987543     55


Q ss_pred             HHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-cC-CcEEEEEccCCCCch-hHHHHHHHHHHHHHHHhC
Q 044090          190 SKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-MG-ILTVGIATVPFCFEG-RRRAIQAQEGVANLRNNV  263 (279)
Q Consensus       190 ~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~g-i~tvaIvtlPf~~Eg-~~r~~NA~~gL~~L~e~a  263 (279)
                      ..+.|++.+|.||   +|+|+|+||||||||++|+|++.+++ |+ .++++++++|+.+|+ ..++|||..+|++|.+++
T Consensus        75 i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~  154 (328)
T cd00286          75 ILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHS  154 (328)
T ss_pred             HHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcC
Confidence            6677788888887   89999999999999999999999987 43 688999999999998 899999999999999999


Q ss_pred             CEEEEEechHHHhhh
Q 044090          264 DTLIVIPNDKLLTAV  278 (279)
Q Consensus       264 D~vIv~DNd~L~~i~  278 (279)
                      |.+|+|||++|+++|
T Consensus       155 d~~i~~dN~~l~~~~  169 (328)
T cd00286         155 DCLVVIDNEALFDIC  169 (328)
T ss_pred             CeEEEecchhHHHHh
Confidence            999999999999876

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.

>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.91  E-value=1.4e-24  Score=208.52  Aligned_cols=156  Identities=21%  Similarity=0.265  Sum_probs=130.1

Q ss_pred             EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhH-----HHHHHH
Q 044090          117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGM-----NAANES  190 (279)
Q Consensus       117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~-----eaa~e~  190 (279)
                      |.+|+|||||++|.+++.+.-      +.||+|.+.+.........++ ......+...|+|++|+.|+     +++++.
T Consensus         2 ii~i~vGq~G~qig~~~w~~~------i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~   75 (382)
T cd06059           2 IISIQIGQCGNQIGNKFWELL------ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEI   75 (382)
T ss_pred             eEEEecCCcHHHHHHHHHHHH------HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHHHH
Confidence            789999999999999998753      889999998876533111111 11222345569999998764     788999


Q ss_pred             HHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-c-CCcEEEEEccCCCCch--hHHHHHHHHHHHHHHHhC
Q 044090          191 KVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-M-GILTVGIATVPFCFEG--RRRAIQAQEGVANLRNNV  263 (279)
Q Consensus       191 ~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~-gi~tvaIvtlPf~~Eg--~~r~~NA~~gL~~L~e~a  263 (279)
                      .+.|++.+|.||   +|+|+++||||||||+++.|++.+++ + +..++++++.|+..++  ..++||+..+|++|.+++
T Consensus        76 ~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~s  155 (382)
T cd06059          76 LDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENS  155 (382)
T ss_pred             HHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcC
Confidence            999999999999   66999999999999999999999986 5 3667888888998876  789999999999999999


Q ss_pred             CEEEEEechHHHhhh
Q 044090          264 DTLIVIPNDKLLTAV  278 (279)
Q Consensus       264 D~vIv~DNd~L~~i~  278 (279)
                      |.+|++||++|.++|
T Consensus       156 d~~i~~~N~~l~~~~  170 (382)
T cd06059         156 DSVILFDNEALYNIL  170 (382)
T ss_pred             CeeEEeehHHHHHHH
Confidence            999999999999876

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi

>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.87  E-value=5.9e-22  Score=191.06  Aligned_cols=155  Identities=19%  Similarity=0.267  Sum_probs=123.1

Q ss_pred             eEEEEeeCcchHHHHHHHHHcC---CCcceEEEEeCcHHHHhcCCCC------CCCeEEcCcccccCCCCCCCchhh---
Q 044090          116 KIKVIGVGGGGSNAVNRMIESS---MTGVEFWIVNTDAQAMKVSPVI------PENRLQIGCELTRGLGAGGNPSVG---  183 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~---~~~ve~iavNTD~~~L~~s~v~------a~~ri~iG~~~t~G~GaG~np~~G---  183 (279)
                      .|..|.+||||++|.+++.+.-   .--...+.||+|...++.....      .++.+..++     .|+|+||+.|   
T Consensus         2 Eii~i~~GqcGnqig~~~w~~~~~eh~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~-----~gaGnn~a~G~~~   76 (379)
T cd02190           2 EIIVVQVGQCGNQIGCRFWDLALREHLKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDV-----SGAGNNWAVGYHQ   76 (379)
T ss_pred             ceEEEecCcHHHHHHHHHHHHHHHhhcCCcceeccCChhHHHHHhcCccccccCcccccccC-----CCCCCCccceeec
Confidence            4789999999999999986542   1236778999998877754221      123333332     4899999876   


Q ss_pred             --HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-cC-CcEEEEEccCCCCch-hHHHHHHHHH
Q 044090          184 --MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-MG-ILTVGIATVPFCFEG-RRRAIQAQEG  255 (279)
Q Consensus       184 --~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~g-i~tvaIvtlPf~~Eg-~~r~~NA~~g  255 (279)
                        .++.++.+|+|++++|.||   +|+|++|||||||||+++.|++.+++ |+ ...+.+++.|+..++ ..++||+..+
T Consensus        77 ~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~~~~~v~~yN~~ls  156 (379)
T cd02190          77 YGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVITSPYNSVLA  156 (379)
T ss_pred             cchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCCCCceecccHHHHH
Confidence              4678889999999999999   67999999999999999999999875 54 445556667776544 5689999999


Q ss_pred             HHHHHHhCCEEEEEechHHH
Q 044090          256 VANLRNNVDTLIVIPNDKLL  275 (279)
Q Consensus       256 L~~L~e~aD~vIv~DNd~L~  275 (279)
                      |+.|.+++|.+|+|||++|.
T Consensus       157 l~~l~~~~d~~i~~~N~~l~  176 (379)
T cd02190         157 LRELIEHADCVLPIENQALV  176 (379)
T ss_pred             HHHHHHhCCeeEEeccHHHH
Confidence            99999999999999999986

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.

>PTZ00387 epsilon tubulin; Provisional

Probab=99.84  E-value=1.2e-20  Score=186.66  Aligned_cols=158  Identities=19%  Similarity=0.290  Sum_probs=124.5

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC---Cc--------------------------ceEEEEeCcHHHHhcCCC---
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM---TG--------------------------VEFWIVNTDAQAMKVSPV---  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~---~~--------------------------ve~iavNTD~~~L~~s~v---  158 (279)
                      .|..|-|||||+.|-+++.+.     ..   .+                          ...+.||++...++....   
T Consensus         3 EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~~~~   82 (465)
T PTZ00387          3 EIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILKSPL   82 (465)
T ss_pred             cEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcccccccceecccccccccCCCccccCcccccCCCccHHHHhhcCCc
Confidence            488999999999999877432     21   00                          223567887766654321   


Q ss_pred             ---CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHH
Q 044090          159 ---IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAK  227 (279)
Q Consensus       159 ---~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiak  227 (279)
                         ..++.+..+     -.|+|+||+.|     .++.++..|.|++++|.||   +|+|++|||||||||+++.|++.++
T Consensus        83 ~~~f~~~~~i~~-----~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~  157 (465)
T PTZ00387         83 GDLFDENFFVSD-----VSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLE  157 (465)
T ss_pred             ccccCccccccc-----CCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHH
Confidence               112233333     35999999987     7889999999999999999   6699999999999999999999988


Q ss_pred             H-cC-CcEEEEEccCCCCch-hHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          228 S-MG-ILTVGIATVPFCFEG-RRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       228 e-~g-i~tvaIvtlPf~~Eg-~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      + |+ ..++++++.|+..++ ..++||+.++|+.|.+++|.+|+||||+|+++|
T Consensus       158 d~y~~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~  211 (465)
T PTZ00387        158 DEFPHVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIA  211 (465)
T ss_pred             HhcccCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHH
Confidence            6 54 556778888886544 578999999999999999999999999999987

>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.84  E-value=3.1e-20  Score=181.45  Aligned_cols=158  Identities=20%  Similarity=0.267  Sum_probs=124.8

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--C------------c--------------ceEEEEeCcHHHHhcCCC----
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--T------------G--------------VEFWIVNTDAQAMKVSPV----  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~------------~--------------ve~iavNTD~~~L~~s~v----  158 (279)
                      .|..|-+||||+.|-+.+.+.     ..  .            .              ...++||+|...|.....    
T Consensus         2 eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~   81 (425)
T cd02187           2 EIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFG   81 (425)
T ss_pred             ceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCccc
Confidence            478899999999998877543     11  0            0              234789999887775422    


Q ss_pred             --CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090          159 --IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS  228 (279)
Q Consensus       159 --~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake  228 (279)
                        ..+++++.|+     .|+|++|+.|     .++.++.++.|++++|.||   +|+|+++||||||||+++.|++.+++
T Consensus        82 ~l~~~~~~~~~~-----~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d  156 (425)
T cd02187          82 QLFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE  156 (425)
T ss_pred             ceecCcceeecc-----CCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHH
Confidence              1234555554     3899999864     5888999999999999999   88999999999999999999998875


Q ss_pred             -cC-CcEEEEEccCC--CCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          229 -MG-ILTVGIATVPF--CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       229 -~g-i~tvaIvtlPf--~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                       |+ ..++++.+.|+  ..|...++||+..+|+.|.+++|.+|+|||++|+++|
T Consensus       157 ~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~  210 (425)
T cd02187         157 EYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDIC  210 (425)
T ss_pred             hcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHH
Confidence             65 33455555565  3488899999999999999999999999999999987

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-

>PLN00220 tubulin beta chain; Provisional

Probab=99.83  E-value=3.3e-20  Score=182.30  Aligned_cols=158  Identities=20%  Similarity=0.271  Sum_probs=127.0

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CCC--------------c--------------ceEEEEeCcHHHHhcCCC----
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SMT--------------G--------------VEFWIVNTDAQAMKVSPV----  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~~--------------~--------------ve~iavNTD~~~L~~s~v----  158 (279)
                      .|..|-+||||+.|-+.+.+.     ...              .              ...+.||+|...+.....    
T Consensus         3 Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~   82 (447)
T PLN00220          3 EILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYG   82 (447)
T ss_pred             ceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCccc
Confidence            478899999999998877432     110              0              233678888776654211    


Q ss_pred             --CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090          159 --IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS  228 (279)
Q Consensus       159 --~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake  228 (279)
                        ..++.+..++     .|+|+||+.|     .+..++.++.|++.+|.||   +|+|++|||||||||+++.|++.+++
T Consensus        83 ~~~~~~~~~~~~-----~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~  157 (447)
T PLN00220         83 QIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE  157 (447)
T ss_pred             cccCccceEecc-----cCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHH
Confidence              1233444443     4899999975     5788999999999999999   99999999999999999999988765


Q ss_pred             -cC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          229 -MG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       229 -~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                       |+   +.+++|+|.|+..|...++||+.++|+.|.+++|.+|+|||++|+++|
T Consensus       158 ~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~  211 (447)
T PLN00220        158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC  211 (447)
T ss_pred             hccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHH
Confidence             64   666778877777899999999999999999999999999999999987

>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.82  E-value=8.9e-20  Score=178.75  Aligned_cols=162  Identities=15%  Similarity=0.167  Sum_probs=125.6

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--Cc----------------------------ceEEEEeCcHHHHhcCCCCC
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--TG----------------------------VEFWIVNTDAQAMKVSPVIP  160 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~----------------------------ve~iavNTD~~~L~~s~v~a  160 (279)
                      .|..|-+||||+.|-.++.+.     ..  .+                            ...+.||+|...+..... .
T Consensus         2 EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~-~   80 (434)
T cd02186           2 EVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRT-G   80 (434)
T ss_pred             ceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhcc-C
Confidence            478899999999998876432     11  00                            234788999888876432 1


Q ss_pred             CCeEEcCcc-c-ccCCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-c
Q 044090          161 ENRLQIGCE-L-TRGLGAGGNPSV-----GMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-M  229 (279)
Q Consensus       161 ~~ri~iG~~-~-t~G~GaG~np~~-----G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~  229 (279)
                      +.+-+++++ . .+-.|+|+||+.     |.++.++.+++|++++|.||   +|+|+++||||||||+++.|++.+++ |
T Consensus        81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y  160 (434)
T cd02186          81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY  160 (434)
T ss_pred             ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence            122233332 1 222478999976     56788999999999999998   79999999999999999999998875 6


Q ss_pred             C-CcEEEEEccCCCC--chhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          230 G-ILTVGIATVPFCF--EGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       230 g-i~tvaIvtlPf~~--Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      + ..++++++.|+..  |...++||+..+|+.|.+++|.+++|||++|+++|
T Consensus       161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~  212 (434)
T cd02186         161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDIC  212 (434)
T ss_pred             CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHH
Confidence            6 5566666677753  77889999999999999999999999999999987

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino

>COG5023 Tubulin [Cytoskeleton]

Probab=99.82  E-value=1.6e-19  Score=172.88  Aligned_cols=158  Identities=21%  Similarity=0.310  Sum_probs=128.3

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHHHhcCC-----
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSP-----  157 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~--------------------------ve~iavNTD~~~L~~s~-----  157 (279)
                      .|.-|=+||||+-|=+++.+.     ++  .|                          ...|.||..+.-+....     
T Consensus         3 EIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~y~   82 (443)
T COG5023           3 EIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYG   82 (443)
T ss_pred             eeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCccc
Confidence            366678999999998887654     21  11                          11255666544444311     


Q ss_pred             -CCCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHH-
Q 044090          158 -VIPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAK-  227 (279)
Q Consensus       158 -v~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiak-  227 (279)
                       ...+.++.+|++     |||+||+.|     ++..+..++.|+++.++||   +|+|+|++|||||||++.++++.++ 
T Consensus        83 ~lf~Pen~i~gke-----gAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~  157 (443)
T COG5023          83 SLFHPENIIFGKE-----GAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLRE  157 (443)
T ss_pred             cccChhheeeccc-----cccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHH
Confidence             123557777776     799999986     7888999999999999999   8899999999999999999987665 


Q ss_pred             HcC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          228 SMG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       228 e~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      ||+   +.+|+|++-|..++...++||+.+++++|.+++|+++++||++|++||
T Consensus       158 eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~  211 (443)
T COG5023         158 EYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDIC  211 (443)
T ss_pred             hcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHH
Confidence            576   888999999999999999999999999999999999999999999998

>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.82  E-value=1.4e-19  Score=178.01  Aligned_cols=162  Identities=16%  Similarity=0.260  Sum_probs=125.3

Q ss_pred             EEEEeeCcchHHHHHHHHHc-----CC--C----------------------cceEEEEeCcHHHHhcCCCCC-CCeEEc
Q 044090          117 IKVIGVGGGGSNAVNRMIES-----SM--T----------------------GVEFWIVNTDAQAMKVSPVIP-ENRLQI  166 (279)
Q Consensus       117 I~VIGIGgaG~NIVd~l~~~-----~~--~----------------------~ve~iavNTD~~~L~~s~v~a-~~ri~i  166 (279)
                      |..|-|||||+.|-+++.+.     ..  .                      -+..+.||+|...++...... ..+.++
T Consensus         2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f   81 (446)
T cd02189           2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKY   81 (446)
T ss_pred             eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCccccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCccccc
Confidence            67899999999999877432     11  0                      033478999988877642211 011111


Q ss_pred             Ccc--cccCCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-cC-CcEE
Q 044090          167 GCE--LTRGLGAGGNPSV-----GMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-MG-ILTV  234 (279)
Q Consensus       167 G~~--~t~G~GaG~np~~-----G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~g-i~tv  234 (279)
                      -++  .++..|+|+||+.     |.++.++.+|.|++.+|.||   +|+++++||||||||+++.|++.+++ ++ ..++
T Consensus        82 ~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~  161 (446)
T cd02189          82 DKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLL  161 (446)
T ss_pred             CchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCcccee
Confidence            111  2334599999996     56888999999999999888   89999999999999999999998875 55 4466


Q ss_pred             EEEccCCC-CchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          235 GIATVPFC-FEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       235 aIvtlPf~-~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      ++++.|+. .|...++||+.++|+.|.+++|.+|+|||++|.++|
T Consensus       162 ~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~  206 (446)
T cd02189         162 NIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRIC  206 (446)
T ss_pred             eeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHH
Confidence            77778864 366789999999999999999999999999999987

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.

>PTZ00335 tubulin alpha chain; Provisional

Probab=99.82  E-value=1e-19  Score=179.11  Aligned_cols=158  Identities=16%  Similarity=0.221  Sum_probs=123.4

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--Cc----------------------------ceEEEEeCcHHHHhcCCC--
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--TG----------------------------VEFWIVNTDAQAMKVSPV--  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~----------------------------ve~iavNTD~~~L~~s~v--  158 (279)
                      .|..|-+||||+.|-+++.+.     +.  .+                            ...+.||+|...+.....  
T Consensus         3 EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~   82 (448)
T PTZ00335          3 EVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGT   82 (448)
T ss_pred             cEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcccCc
Confidence            488999999999999877432     11  00                            122667887776654321  


Q ss_pred             ----CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHH
Q 044090          159 ----IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA  226 (279)
Q Consensus       159 ----~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeia  226 (279)
                          ..++.+..|+     .|+|+||+.|     .+..++.+|.|++++|.||   +|+|++|||||||||+++.|++.+
T Consensus        83 ~~~l~~~~~~i~~~-----~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l  157 (448)
T PTZ00335         83 YRQLFHPEQLISGK-----EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERL  157 (448)
T ss_pred             cccccCchheeecC-----CCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHH
Confidence                1233444443     4899999875     5678999999999999999   779999999999999999999988


Q ss_pred             HH-cC-CcEEEEEccCC--CCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          227 KS-MG-ILTVGIATVPF--CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       227 ke-~g-i~tvaIvtlPf--~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      ++ |+ ..++++++.|+  ..|...++||+..+|+.|.+++|.+++|||++|+++|
T Consensus       158 ~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~  213 (448)
T PTZ00335        158 SVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDIC  213 (448)
T ss_pred             HHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHH
Confidence            75 54 45566666776  4578899999999999999999999999999999887

>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

Probab=99.81  E-value=2.8e-19  Score=175.32  Aligned_cols=160  Identities=18%  Similarity=0.236  Sum_probs=121.4

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHHHhcCCC----
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSPV----  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~--------------------------ve~iavNTD~~~L~~s~v----  158 (279)
                      .|..|-|||||+.|-+++.+.     ..  .+                          ...+.||+|...++....    
T Consensus         2 EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~   81 (431)
T cd02188           2 EIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYR   81 (431)
T ss_pred             cEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCccc
Confidence            478899999999999877432     11  00                          223678888776654321    


Q ss_pred             --CCCCeEEcCcccccCCCCCCCchhhHHH----HHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-
Q 044090          159 --IPENRLQIGCELTRGLGAGGNPSVGMNA----ANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-  228 (279)
Q Consensus       159 --~a~~ri~iG~~~t~G~GaG~np~~G~ea----a~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-  228 (279)
                        ..++.+..+++   |.|+|+||+.|+..    .++.++.|++.+|.||   +|+|++|||||||||+++.|++.+++ 
T Consensus        82 ~lf~~~~~~~~~~---~~gagnnwa~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~  158 (431)
T cd02188          82 NLYNPENIFLSKH---GGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDR  158 (431)
T ss_pred             cccCccceEeecc---CCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhH
Confidence              12344544432   34999999998654    4566777788888897   99999999999999999999998875 


Q ss_pred             cC-CcEEEEEccCCCCc---hhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          229 MG-ILTVGIATVPFCFE---GRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       229 ~g-i~tvaIvtlPf~~E---g~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      |+ ..++++++.|+..+   ...++||+..+|+.|.+++|.+++||||+|+++|
T Consensus       159 y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~  212 (431)
T cd02188         159 YPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIA  212 (431)
T ss_pred             cCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHH
Confidence            65 44566666787543   4689999999999999999999999999999987

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.

>PLN00222 tubulin gamma chain; Provisional

Probab=99.80  E-value=3.1e-19  Score=176.02  Aligned_cols=160  Identities=17%  Similarity=0.254  Sum_probs=122.0

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHHHhcCCC----
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSPV----  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~--------------------------ve~iavNTD~~~L~~s~v----  158 (279)
                      .|..|-+||||+.|-+++.+.     ..  .+                          ...+.||++...++....    
T Consensus         4 EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~   83 (454)
T PLN00222          4 EIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYR   83 (454)
T ss_pred             cEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCccc
Confidence            488999999999999877432     11  00                          234678888776654321    


Q ss_pred             --CCCCeEEcCcccccCCCCCCCchhhH----HHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-
Q 044090          159 --IPENRLQIGCELTRGLGAGGNPSVGM----NAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-  228 (279)
Q Consensus       159 --~a~~ri~iG~~~t~G~GaG~np~~G~----eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-  228 (279)
                        ..++.+..|++   |.|+|+||+.|+    +..++.++.|++.+|.||   +|++++|||||||||+++.|++.+++ 
T Consensus        84 ~lf~~~~~~~~~~---~~gagnn~a~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~  160 (454)
T PLN00222         84 NLYNHENIFVSDH---GGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR  160 (454)
T ss_pred             cccCccceeeccc---CCCcccchHHhHHHHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence              12334555543   338999999985    445666777788888888   99999999999999999999998875 


Q ss_pred             cC-CcEEEEEccCCCC---chhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          229 MG-ILTVGIATVPFCF---EGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       229 ~g-i~tvaIvtlPf~~---Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      |+ ..++++.+.|+..   +...++||+..+|+.|.+++|.+|+|||++|+++|
T Consensus       161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic  214 (454)
T PLN00222        161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA  214 (454)
T ss_pred             cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHH
Confidence            65 4466666678743   34589999999999999999999999999999998

>PTZ00010 tubulin beta chain; Provisional

Probab=99.79  E-value=1.3e-18  Score=171.10  Aligned_cols=158  Identities=20%  Similarity=0.301  Sum_probs=122.8

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHHHhcCCC----
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSPV----  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~--------------------------ve~iavNTD~~~L~~s~v----  158 (279)
                      .|..|-+||||+.|-+.+.+.     ..  .+                          ...+.||+|...+.....    
T Consensus         3 Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~   82 (445)
T PTZ00010          3 EIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYG   82 (445)
T ss_pred             cEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccchh
Confidence            478899999999988766432     11  00                          134778998887764321    


Q ss_pred             --CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090          159 --IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS  228 (279)
Q Consensus       159 --~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake  228 (279)
                        ..++++.+|+     .|+|+||+.|     .+..++..+.|++++|.||   +|+|+++||||||||++..|++.+++
T Consensus        83 ~lf~~~~~~~~~-----~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~d  157 (445)
T PTZ00010         83 QLFRPDNFIFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLRE  157 (445)
T ss_pred             hhcCccceeecc-----cCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHh
Confidence              1234555554     4899999875     5788999999999999998   99999999999999999999998874


Q ss_pred             -cC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          229 -MG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       229 -~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                       |+   +.+++|++.|...+...++||+..+++.|.+++|.+|+|||++|+++|
T Consensus       158 ey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~  211 (445)
T PTZ00010        158 EYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDIC  211 (445)
T ss_pred             hCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHH
Confidence             65   344455443344567899999999999999999999999999999998

>PLN00221 tubulin alpha chain; Provisional

Probab=99.79  E-value=1.1e-18  Score=171.83  Aligned_cols=158  Identities=16%  Similarity=0.205  Sum_probs=123.9

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--Cc----------------------------ceEEEEeCcHHHHhcCCC--
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--TG----------------------------VEFWIVNTDAQAMKVSPV--  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~----------------------------ve~iavNTD~~~L~~s~v--  158 (279)
                      .|..|-|||||+.|-+++.+.     +.  .+                            ...+.||+|...++....  
T Consensus         3 EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~   82 (450)
T PLN00221          3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT   82 (450)
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhccCc
Confidence            488999999999999876433     11  00                            223668888777665321  


Q ss_pred             ----CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHH
Q 044090          159 ----IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA  226 (279)
Q Consensus       159 ----~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeia  226 (279)
                          ..++.+..++     .|+|+||+.|     .+..++.++.|++++|.||   +|+|+++||||||||.+..|++.+
T Consensus        83 ~~~lf~~~~~i~~~-----~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l  157 (450)
T PLN00221         83 YRQLFHPEQLISGK-----EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERL  157 (450)
T ss_pred             cccccCccceeccC-----CCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHH
Confidence                1223444443     4899999985     5788999999999999999   889999999999999999999888


Q ss_pred             HH-cC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          227 KS-MG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       227 ke-~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      ++ |+   +.+++|+|.|...+...++||+.++|+.|.+++|.+++|||++|+++|
T Consensus       158 ~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~  213 (450)
T PLN00221        158 SVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC  213 (450)
T ss_pred             HHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHH
Confidence            75 65   555666655545567789999999999999999999999999999987

>KOG1374 consensus Gamma tubulin [Cytoskeleton]

Probab=99.58  E-value=3.2e-14  Score=137.00  Aligned_cols=159  Identities=16%  Similarity=0.235  Sum_probs=118.3

Q ss_pred             ceEEEEeeCcchHHHHHHHHHc-----CC----------------Cc------------ceEEEEeCcHHHHhcCCC---
Q 044090          115 AKIKVIGVGGGGSNAVNRMIES-----SM----------------TG------------VEFWIVNTDAQAMKVSPV---  158 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~-----~~----------------~~------------ve~iavNTD~~~L~~s~v---  158 (279)
                      ..|.-+=+||||+-|--++.++     +.                ++            ...+.||-.+..++...-   
T Consensus         3 ~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~~   82 (448)
T KOG1374|consen    3 REIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSPY   82 (448)
T ss_pred             ceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccchh
Confidence            4577788999999988776654     11                00            112556666555554211   


Q ss_pred             ---CCCCeEEcCcccccCCCCCCCchhhH----HHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090          159 ---IPENRLQIGCELTRGLGAGGNPSVGM----NAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS  228 (279)
Q Consensus       159 ---~a~~ri~iG~~~t~G~GaG~np~~G~----eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake  228 (279)
                         ..+.++.+-   -.|.|||+||+-|+    +.-++.++.|++.+++||   +|+++|++.||||||.+..+.|.+++
T Consensus        83 s~l~n~eni~~s---~~ggGAGNNWA~GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~d  159 (448)
T KOG1374|consen   83 SGLYNPENIFLS---DHGGGAGNNWASGYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLND  159 (448)
T ss_pred             hcccCccceEEe---cCCCCcccccccccccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHH
Confidence               122334432   24779999999865    555666777788888999   89999999999999999999998876


Q ss_pred             -cC---CcEEEEEccCCCC---chhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          229 -MG---ILTVGIATVPFCF---EGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       229 -~g---i~tvaIvtlPf~~---Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                       |.   +.+++|+  |...   |-...+||..++|++|.+++|+++|+||.+|.+||
T Consensus       160 rypkkliqtysVf--Pn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria  214 (448)
T KOG1374|consen  160 RYPKKLVQTYSVF--PNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIA  214 (448)
T ss_pred             hchhhhheeeeec--cCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHH
Confidence             54   6778885  6654   44679999999999999999999999999999886

>PF13809 Tubulin_2: Tubulin like

Probab=99.25  E-value=9e-11  Score=111.92  Aligned_cols=146  Identities=25%  Similarity=0.339  Sum_probs=99.1

Q ss_pred             EEEeeCcchHHHHHHHHHc--------C-CCcceEEEEeCcHH-------------HHhcC-CCCC---C---C------
Q 044090          118 KVIGVGGGGSNAVNRMIES--------S-MTGVEFWIVNTDAQ-------------AMKVS-PVIP---E---N------  162 (279)
Q Consensus       118 ~VIGIGgaG~NIVd~l~~~--------~-~~~ve~iavNTD~~-------------~L~~s-~v~a---~---~------  162 (279)
                      +|||+||.|..++.+|.++        + ++.++|++||||..             .+... ....   .   .      
T Consensus         1 lvIGlGGTG~~~l~~l~~~l~~~~~~~~~~~~v~Fl~iDt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (345)
T PF13809_consen    1 LVIGLGGTGGKILARLRRRLREELGGLELPPCVQFLYIDTDENSGLADGRSHGVGISLDEIEKLYAFITSSDLSQRLDRL   80 (345)
T ss_pred             CEEEeCchHHHHHHHHHHHHHHHhcCcCCCCcEEEEEEEcCcccccccccccccccccCchhhcccccchhhHHHHHhcc
Confidence            4899999999999988765        1 34599999999988             11110 0000   0   0      


Q ss_pred             ------eEEcCccc-----ccCCCCCCCchhhHHHHHHHHHHH----HHHhc---------CC-C---EEEEEeecCCCc
Q 044090          163 ------RLQIGCEL-----TRGLGAGGNPSVGMNAANESKVAI----EEAIS---------GA-D---MIFVTAGMGGGT  214 (279)
Q Consensus       163 ------ri~iG~~~-----t~G~GaG~np~~G~eaa~e~~e~I----~~~Le---------~~-D---~vfIvAGLGGGT  214 (279)
                            +-++..+.     .-..|||.-+.+|+.+.-...++|    +++++         .. +   .|||++||+|||
T Consensus        81 ~~~~~i~~W~p~~~~~~~~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGT  160 (345)
T PF13809_consen   81 SAYPEIAEWLPPELERNNTPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGT  160 (345)
T ss_pred             cCCchhhhcCCccccccCCchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCcc
Confidence                  01222222     124689999999987764444444    33333         11 1   799999999999


Q ss_pred             ccCHHHHHHHHHHH-c------CCcEEEEEccCCCCch-----hHHHHHHHHHHHHHHHhC
Q 044090          215 GTGAAPVIAGIAKS-M------GILTVGIATVPFCFEG-----RRRAIQAQEGVANLRNNV  263 (279)
Q Consensus       215 GSG~aPvIaeiake-~------gi~tvaIvtlPf~~Eg-----~~r~~NA~~gL~~L~e~a  263 (279)
                      |||+..-|+.+++. +      ...+.+++.+|..|++     .+...||..+|.+|..+.
T Consensus       161 GSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~~  221 (345)
T PF13809_consen  161 GSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYLM  221 (345)
T ss_pred             chhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHHh
Confidence            99998888877765 2      3777888889986654     466779999999998543

>KOG1376 consensus Alpha tubulin [Cytoskeleton]

Probab=98.57  E-value=1.6e-08  Score=97.49  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             ccCCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHH-HHHcC---CcEEEEEc
Q 044090          171 TRGLGAGGNPSV-----GMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGI-AKSMG---ILTVGIAT  238 (279)
Q Consensus       171 t~G~GaG~np~~-----G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaei-ake~g---i~tvaIvt  238 (279)
                      +....+.+|+++     |+|.++...++|++..+.|.   .|++++++|||||||.+..+.+. ..++|   .+-+++.+
T Consensus        93 tGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~GKkskl~fsiyp  172 (407)
T KOG1376|consen   93 TGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDYGKKSKLEFSIYP  172 (407)
T ss_pred             CcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhhhhhcccccccccc
Confidence            334467788877     56788999999999999888   68999999999999998877765 45666   56688888


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhhC
Q 044090          239 VPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS  279 (279)
Q Consensus       239 lPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~~  279 (279)
                      .|-.++....+||+...-+...+++|+.+.+||++++++|.
T Consensus       173 apqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr  213 (407)
T KOG1376|consen  173 APQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICR  213 (407)
T ss_pred             CccccccccCCccccccceeecccCcceeecCchhhcchhh
Confidence            88888889999999999999999999999999999999983

>KOG1375 consensus Beta tubulin [Cytoskeleton]

Probab=98.47  E-value=5.7e-08  Score=93.60  Aligned_cols=76  Identities=22%  Similarity=0.315  Sum_probs=66.6

Q ss_pred             EEEEEeecCCCcccCHHHHHHHHHHH-cC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          203 MIFVTAGMGGGTGTGAAPVIAGIAKS-MG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       203 ~vfIvAGLGGGTGSG~aPvIaeiake-~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      .++++|+||||||+|....+.+.+++ +.   ..++++++.|. .....++|||..++.+|.+++|.++++||++|++||
T Consensus        77 gfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic  155 (369)
T KOG1375|consen   77 GFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDIC  155 (369)
T ss_pred             cceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHH
Confidence            88999999999999999888766654 43   56677877777 777899999999999999999999999999999998


Q ss_pred             C
Q 044090          279 S  279 (279)
Q Consensus       279 ~  279 (279)
                      .
T Consensus       156 ~  156 (369)
T KOG1375|consen  156 F  156 (369)
T ss_pred             h
Confidence            4

>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria

Probab=98.42  E-value=1.4e-06  Score=87.70  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHH-HcC---CcEEEEEccCCC----
Q 044090          174 LGAGGNPSVGMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAK-SMG---ILTVGIATVPFC----  242 (279)
Q Consensus       174 ~GaG~np~~G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiak-e~g---i~tvaIvtlPf~----  242 (279)
                      .|.|.+.-.+.+..++..++|++.+|.||   +|+|+++++||| +|.+..+++.++ |++   +.++++.+.|..    
T Consensus       121 fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~  199 (493)
T cd06060         121 FGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASS  199 (493)
T ss_pred             cccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCccccccc
Confidence            34455544555677889999999999999   889999999999 999999988766 566   333333333321    


Q ss_pred             CchhHHHHHHHHHHHHHHHhCCEEEEEech
Q 044090          243 FEGRRRAIQAQEGVANLRNNVDTLIVIPND  272 (279)
Q Consensus       243 ~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd  272 (279)
                      .+...++||+..++..|.+++|.+++|.-.
T Consensus       200 ~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~  229 (493)
T cd06060         200 DKNSIRVLNTALGLAQLSEHSSLFVPLSLS  229 (493)
T ss_pred             chhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            145689999999999999999999988754

It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.46  E-value=0.093  Score=50.53  Aligned_cols=45  Identities=13%  Similarity=0.276  Sum_probs=35.0

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +....+.+|.|||+|+.|+.++..|...+.  -++..||-|.-++.+
T Consensus        19 Q~~L~~~~VlIiG~GglGs~va~~La~aGv--g~i~lvD~D~ve~sN   63 (338)
T PRK12475         19 QRKIREKHVLIVGAGALGAANAEALVRAGI--GKLTIADRDYVEWSN   63 (338)
T ss_pred             HHhhcCCcEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCcccccc
Confidence            455677899999999999999999998643  155668888765544

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.46  E-value=0.1  Score=47.25  Aligned_cols=99  Identities=25%  Similarity=0.368  Sum_probs=67.7

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc-CCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-SPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~-s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      |++.|||+|..|..++..|.+.   +.+.++|+.|.+..+. .....+-....|..        .           +.+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~---g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~--------t-----------~~~~   58 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE---GHNVVLIDRDEERVEEFLADELDTHVVIGDA--------T-----------DEDV   58 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC---CCceEEEEcCHHHHHHHhhhhcceEEEEecC--------C-----------CHHH
Confidence            6899999999999999999884   5688899999888766 11001233444322        1           2344


Q ss_pred             HHHH-hcCCCEEEEEeecCCCcccCH-HHHHHHHHHH-cCCcE-EEEEccCC
Q 044090          194 IEEA-ISGADMIFVTAGMGGGTGTGA-APVIAGIAKS-MGILT-VGIATVPF  241 (279)
Q Consensus       194 I~~~-Le~~D~vfIvAGLGGGTGSG~-aPvIaeiake-~gi~t-vaIvtlPf  241 (279)
                      ++++ ++++|+|+.+      ||... ..+++.++++ ++++. ++-+..|.
T Consensus        59 L~~agi~~aD~vva~------t~~d~~N~i~~~la~~~~gv~~viar~~~~~  104 (225)
T COG0569          59 LEEAGIDDADAVVAA------TGNDEVNSVLALLALKEFGVPRVIARARNPE  104 (225)
T ss_pred             HHhcCCCcCCEEEEe------eCCCHHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence            5555 7899999884      77754 4556777755 88554 66666664

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.08  E-value=0.13  Score=45.69  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=33.1

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      +....+.||.|||+||.|+.++..|...+..  ++..+|-|.-..
T Consensus        16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~--~i~lvD~d~ve~   58 (202)
T TIGR02356        16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVG--TIVIVDDDHVDL   58 (202)
T ss_pred             HHHhcCCCEEEECCCHHHHHHHHHHHHcCCC--eEEEecCCEEcc
Confidence            3456778999999999999999999886532  566677765443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06153 hypothetical protein; Provisional

Probab=94.80  E-value=0.26  Score=48.83  Aligned_cols=42  Identities=21%  Similarity=0.386  Sum_probs=33.6

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ..+.+|.|||+||.|+.+++.|.+.+.  -++..||-|.-...+
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR~GV--geI~LVD~D~Ve~SN  215 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAKTPV--REIHLFDGDDFLQHN  215 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHHcCC--CEEEEECCCEecccc
Confidence            456799999999999999999999764  367778887555443

>PF14881 Tubulin_3: Tubulin domain

Probab=94.78  E-value=0.2  Score=44.29  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=61.3

Q ss_pred             CchhhHHHHH------HHHH-HHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHHcCCcEE--EEEccCCCC-ch
Q 044090          179 NPSVGMNAAN------ESKV-AIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV--GIATVPFCF-EG  245 (279)
Q Consensus       179 np~~G~eaa~------e~~e-~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake~gi~tv--aIvtlPf~~-Eg  245 (279)
                      ++..|.+..+      +..+ .|+..+|.||   +|.|+..+-+|=|.=++-+|-.+..||+...+  +....+... ..
T Consensus        42 ~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~  121 (180)
T PF14881_consen   42 TFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSR  121 (180)
T ss_pred             cccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcccccc
Confidence            3555665543      3344 3999999999   88999988888754445555556668886554  222121111 11


Q ss_pred             ------hHHHHHHHHHHHHHHHhCCEEEEEe
Q 044090          246 ------RRRAIQAQEGVANLRNNVDTLIVIP  270 (279)
Q Consensus       246 ------~~r~~NA~~gL~~L~e~aD~vIv~D  270 (279)
                            ..|..|...++.+|.++++.++.+.
T Consensus       122 ~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~  152 (180)
T PF14881_consen  122 DAPRKRRLRLLNKALSLSELSEQSSLFVPLS  152 (180)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhCCEEEecC
Confidence                  2356799999999999999999886

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.75  E-value=0.13  Score=43.21  Aligned_cols=103  Identities=22%  Similarity=0.303  Sum_probs=62.0

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc-------CCCCCCCeEEcCcccccCCCCCCCchhhHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-------SPVIPENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~-------s~v~a~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      |||.|||. |..|..++-.|...++ .-|...+|.+.+.++.       ...+......+...                 
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~-----------------   62 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG-----------------   62 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES-----------------
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcccceeeehhhhhhhhhcccccccccc-----------------
Confidence            79999999 9999999999888743 5567788987443221       11011122332211                 


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH---cC-CcEEEEEccCCC
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS---MG-ILTVGIATVPFC  242 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake---~g-i~tvaIvtlPf~  242 (279)
                             ..+.+++||.|++++|.--.-|.--       ++++.+++++   +. --.+.+++-|-.
T Consensus        63 -------~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd  122 (141)
T PF00056_consen   63 -------DYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD  122 (141)
T ss_dssp             -------SGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH
T ss_pred             -------cccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH
Confidence                   1356789999999998754333322       4555444433   33 345667777863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.58  E-value=0.26  Score=47.06  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      +..||.|||.|..|..++..+...++  .+.+.+|.|.+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl--~~i~LvDi~~~   41 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNL--GDVVLFDIVKN   41 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEeCCCc
Confidence            34799999999999999998877655  35666777655

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.40  E-value=0.38  Score=46.41  Aligned_cols=46  Identities=17%  Similarity=0.277  Sum_probs=36.0

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS  156 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s  156 (279)
                      +......||.|||+|+-|+.++..|.+.+..  ++..||.|.-.+.+.
T Consensus        19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL   64 (339)
T PRK07688         19 QQKLREKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDYVEWSNL   64 (339)
T ss_pred             HHHhcCCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCccCHHHc
Confidence            4556778999999999999999999886432  567789887666553

>PRK05086 malate dehydrogenase; Provisional

Probab=94.17  E-value=0.46  Score=45.12  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=26.1

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      |||.|||. |+.|..++-.|........++.+++.+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~   36 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA   36 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence            79999999 999999998875533334566666653

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.11  E-value=0.4  Score=43.95  Aligned_cols=45  Identities=20%  Similarity=0.372  Sum_probs=34.5

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +....+.||.|||+||-|+.++..|...+..  ++..+|-|.-.+.+
T Consensus        27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sN   71 (245)
T PRK05690         27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVG--TLTLVDFDTVSLSN   71 (245)
T ss_pred             HHHhcCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEECcch
Confidence            3456778999999999999999999986542  45667887555443

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.92  E-value=0.43  Score=44.42  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      +||.|||.|..|..++..+...+..  +.+.+|.|.+.+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~--ev~L~D~~~~~~   39 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG--DVVLFDIVEGVP   39 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe--EEEEEECCCchh
Confidence            6999999999999999998876542  888888765543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.87  E-value=0.6  Score=39.10  Aligned_cols=96  Identities=23%  Similarity=0.226  Sum_probs=63.2

Q ss_pred             EEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHH
Q 044090          117 IKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIE  195 (279)
Q Consensus       117 I~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~  195 (279)
                      |.|+|. |..|..++..|++.+   .+..++--+.+.+...   ..-.+..+.           +        .+.+.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~~~~~~---~~~~~~~~d-----------~--------~d~~~~~   55 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPSKAEDS---PGVEIIQGD-----------L--------FDPDSVK   55 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGHHHC---TTEEEEESC-----------T--------TCHHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCC---CEEEEEecCchhcccc---cccccceee-----------e--------hhhhhhh
Confidence            689997 999999999999965   6777776666655541   122232221           1        2347788


Q ss_pred             HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEc
Q 044090          196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIAT  238 (279)
Q Consensus       196 ~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvt  238 (279)
                      +++.++|.||.+.+-...- .-.+..+++.+++.++.-+.++.
T Consensus        56 ~al~~~d~vi~~~~~~~~~-~~~~~~~~~a~~~~~~~~~v~~s   97 (183)
T PF13460_consen   56 AALKGADAVIHAAGPPPKD-VDAAKNIIEAAKKAGVKRVVYLS   97 (183)
T ss_dssp             HHHTTSSEEEECCHSTTTH-HHHHHHHHHHHHHTTSSEEEEEE
T ss_pred             hhhhhcchhhhhhhhhccc-ccccccccccccccccccceeee
Confidence            9999999999988554442 22234556667777766555544

...

>PRK08328 hypothetical protein; Provisional

Probab=93.77  E-value=0.58  Score=42.51  Aligned_cols=45  Identities=20%  Similarity=0.399  Sum_probs=33.6

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +....+.+|.|||+||.|+.++..|...+..  ++..+|-|.-.+.+
T Consensus        22 q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg--~i~lvD~D~ve~sN   66 (231)
T PRK08328         22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVG--RILLIDEQTPELSN   66 (231)
T ss_pred             HHHHhCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCccChhh
Confidence            3445677999999999999999999987643  34557777655544

>PRK10886 DnaA initiator-associating protein DiaA; Provisional

Probab=93.64  E-value=1.5  Score=39.26  Aligned_cols=123  Identities=16%  Similarity=0.117  Sum_probs=71.0

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHc------CCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIES------SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMN  185 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~------~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~e  185 (279)
                      .++.||.++|+|+.|...-+.-.+.      ...+...+++.+|..-+.....                    +.  |  
T Consensus        39 ~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~an--------------------d~--~--   94 (196)
T PRK10886         39 LNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIAN--------------------DR--L--   94 (196)
T ss_pred             HcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhc--------------------cc--c--
Confidence            3457999999999888754333221      1245666667667665443210                    00  0  


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCE
Q 044090          186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDT  265 (279)
Q Consensus       186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~  265 (279)
                      ..+-...+++..+..-|.+|++.. .|.|  -..-.+++++|+.|+++++|...|.+            -|.++...+|.
T Consensus        95 ~~~~f~~ql~~~~~~gDvli~iS~-SG~s--~~v~~a~~~Ak~~G~~vI~IT~~~~s------------~l~~l~~~~D~  159 (196)
T PRK10886         95 HDEVYAKQVRALGHAGDVLLAIST-RGNS--RDIVKAVEAAVTRDMTIVALTGYDGG------------ELAGLLGPQDV  159 (196)
T ss_pred             HHHHHHHHHHHcCCCCCEEEEEeC-CCCC--HHHHHHHHHHHHCCCEEEEEeCCCCC------------hhhhccccCCE
Confidence            122334556666677788877644 2222  22344467889999999999755441            22333334677


Q ss_pred             EEEEechH
Q 044090          266 LIVIPNDK  273 (279)
Q Consensus       266 vIv~DNd~  273 (279)
                      +|.++.+.
T Consensus       160 ~i~ip~~~  167 (196)
T PRK10886        160 EIRIPSHR  167 (196)
T ss_pred             EEEcCCCc
Confidence            77777654

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.23  E-value=0.93  Score=43.10  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=28.8

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      .++||.|||.|..|..++..+...++  .+...+|.|.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~--~~l~L~Di~~   39 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNL--GDVVLYDVIK   39 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCC--CeEEEEECCC
Confidence            56799999999999999988877654  4666778764

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=93.07  E-value=0.21  Score=50.98  Aligned_cols=43  Identities=19%  Similarity=0.385  Sum_probs=35.1

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC-cHHHHhc
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMKV  155 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT-D~~~L~~  155 (279)
                      ...||+|||.||.||-.+..|...+...++.+=+|| |...|++
T Consensus        11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNR   54 (603)
T KOG2013|consen   11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNR   54 (603)
T ss_pred             ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhh
Confidence            467999999999999999999998888888766666 6655554

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.04  E-value=1.1  Score=36.88  Aligned_cols=36  Identities=19%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      ||.|||+|+.|+.++..|...+.  -++..+|-|.-..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv--~~i~ivD~d~v~~   36 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGV--GKITLIDFDTVEL   36 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC--CEEEEEcCCCcCc
Confidence            68999999999999999998654  2566778765443

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=92.86  E-value=3.4  Score=36.23  Aligned_cols=99  Identities=14%  Similarity=0.216  Sum_probs=63.1

Q ss_pred             EEEEee-CcchHHHHHHHHHcCCCcceEEEE--eCcHH---HHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          117 IKVIGV-GGGGSNAVNRMIESSMTGVEFWIV--NTDAQ---AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       117 I~VIGI-GgaG~NIVd~l~~~~~~~ve~iav--NTD~~---~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      |.|+|. |.-|..+++.|.+   .+.+..++  |.+..   .|...    ...+..+.           +        .+
T Consensus         1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~~----g~~vv~~d-----------~--------~~   54 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQAL----GAEVVEAD-----------Y--------DD   54 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHHT----TTEEEES------------T--------T-
T ss_pred             CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhcc----cceEeecc-----------c--------CC
Confidence            789997 9999999999999   45555554  33222   22222    12232211           1        25


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF  241 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf  241 (279)
                      .+.+.++++++|.||++-+.-.........-+++.+++.|+.-|....+..
T Consensus        55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~  105 (233)
T PF05368_consen   55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA  105 (233)
T ss_dssp             HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred             HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence            688999999999998775543344456778889999998877665433333

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.62  E-value=0.86  Score=44.07  Aligned_cols=45  Identities=27%  Similarity=0.380  Sum_probs=34.5

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +....+.++.|||+||.|+.++..|...+..  ++..+|-|.-.+.+
T Consensus        23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg--~i~lvD~D~ve~sN   67 (355)
T PRK05597         23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVG--HITIIDDDTVDLSN   67 (355)
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEEcccc
Confidence            3456678999999999999999999886543  35567887655544

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=92.58  E-value=1.1  Score=40.95  Aligned_cols=88  Identities=26%  Similarity=0.461  Sum_probs=54.7

Q ss_pred             EEEEee-CcchHHHHHHHHHcCC-CcceEEEEeCcHHHHhcCC-----CCC---CCeEEcCcccccCCCCCCCchhhHHH
Q 044090          117 IKVIGV-GGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMKVSP-----VIP---ENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       117 I~VIGI-GgaG~NIVd~l~~~~~-~~ve~iavNTD~~~L~~s~-----v~a---~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      |.|||. |..|..++-.+...+. ...+...+|.|.+.++...     ...   ..++...                   
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~-------------------   61 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSIT-------------------   61 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEEC-------------------
Confidence            579999 8889999988877642 2367788888764443310     000   1122211                   


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS  228 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake  228 (279)
                           +...+.+++||.|+++++-++..|-+-       +|++.+++++
T Consensus        62 -----~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~  105 (263)
T cd00650          62 -----DDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDN  105 (263)
T ss_pred             -----CchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence                 113566789999999998888877544       3555555544

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK08223 hypothetical protein; Validated

Probab=92.31  E-value=1.4  Score=41.92  Aligned_cols=46  Identities=15%  Similarity=0.304  Sum_probs=35.2

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS  156 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s  156 (279)
                      +....+.+|.|||+||-|+.++..|...+..  ++..+|-|.-++.+.
T Consensus        22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG--~i~lvD~D~Ve~SNL   67 (287)
T PRK08223         22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIG--KFTIADFDVFELRNF   67 (287)
T ss_pred             HHHHhcCCEEEECCCHHHHHHHHHHHHhCCC--eEEEEeCCCcchhcc
Confidence            3446678999999999999999999997653  345678876665543

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.86  E-value=0.31  Score=47.72  Aligned_cols=40  Identities=28%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC-cHHHHh
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMK  154 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT-D~~~L~  154 (279)
                      -||+|||.||-||-++..|.-.+..+++.+-+|| |...|+
T Consensus        41 ~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLN   81 (422)
T KOG2015|consen   41 CKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLN   81 (422)
T ss_pred             CcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccch
Confidence            6999999999999999999888877777666665 544443

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=91.51  E-value=1.4  Score=42.50  Aligned_cols=107  Identities=17%  Similarity=0.193  Sum_probs=59.9

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCC-----------Cchh--
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGG-----------NPSV--  182 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~-----------np~~--  182 (279)
                      |++|||+||-|+.++..|...+..  ++..+|-|.-+..+.    .+.+++..+.. ..|..+           ||.+  
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg--~ItlvD~D~Ve~sNL----~RQ~L~~~~D~-~iGk~Ka~aaa~~L~~iNP~v~v   73 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVR--HITFVDSGKVSYSNP----VRQSLFTFEDC-KGGKPKAEAAAERLKEIFPSIDA   73 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEeccccC----Ccccccccchh-hcCccHHHHHHHHHHHHCCCcEE
Confidence            689999999999999999987653  344566665444332    12222222110 001000           0000  


Q ss_pred             ---------------hH--HHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHH-HHHHHcCCcEEE
Q 044090          183 ---------------GM--NAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIA-GIAKSMGILTVG  235 (279)
Q Consensus       183 ---------------G~--eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIa-eiake~gi~tva  235 (279)
                                     ..  +-.++..+.+.+.++++|.||.      .|.+=.+-.+. .++..++++.+.
T Consensus        74 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d------~tDn~esR~L~~~~~~~~~k~~I~  138 (307)
T cd01486          74 TGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFL------LTDSRESRWLPTLLSAAKNKLVIN  138 (307)
T ss_pred             EEeeeeccccccccccccccccccCHHHHHHHHhhCCEEEE------CCCCHHHHHHHHHHHHHhCCcEEE
Confidence                           00  0012345567788889998887      46665565554 566777777775

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.30  E-value=2.1  Score=40.75  Aligned_cols=35  Identities=23%  Similarity=0.406  Sum_probs=27.8

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      .+||.|||.|..|..++-.|...++ ..++..+|.+
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~-~~el~LiD~~   37 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGL-ADELVLVDVV   37 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            5699999999999999998876643 4567777763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.90  E-value=0.56  Score=38.89  Aligned_cols=42  Identities=21%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      +..+.++.|||.||+|..++.+|.+.+.+  +...+|=+.+..+
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt~~ra~   50 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAK--EITIVNRTPERAE   50 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESSHHHHH
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECCHHHHH
Confidence            45678999999999999999999986432  2566776655443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.69  E-value=1.8  Score=42.01  Aligned_cols=99  Identities=22%  Similarity=0.308  Sum_probs=61.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      |+|.|+|.|..|..++..|.+.   +.++++++.|.+.++...-....++..|..        .           ..+.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~---g~~v~vid~~~~~~~~~~~~~~~~~~~gd~--------~-----------~~~~l   58 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGE---NNDVTVIDTDEERLRRLQDRLDVRTVVGNG--------S-----------SPDVL   58 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHhhcCEEEEEeCC--------C-----------CHHHH
Confidence            6899999999999999999874   568899999888766531101123333311        1           12334


Q ss_pred             HHH-hcCCCEEEEEeecCCCcccCHHHHHHHHHHHc-C-CcEEEEEccC
Q 044090          195 EEA-ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM-G-ILTVGIATVP  240 (279)
Q Consensus       195 ~~~-Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~-g-i~tvaIvtlP  240 (279)
                      +++ ++++|.++++..     .-...-.++..+|++ + ..+++.+..+
T Consensus        59 ~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~~~~~~  102 (453)
T PRK09496         59 REAGAEDADLLIAVTD-----SDETNMVACQIAKSLFGAPTTIARVRNP  102 (453)
T ss_pred             HHcCCCcCCEEEEecC-----ChHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence            444 789998887632     123344566778875 5 4445544333

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=90.68  E-value=2.9  Score=41.87  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             ceEEEEeeCcchH-HHHHHHHHc--CCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          115 AKIKVIGVGGGGS-NAVNRMIES--SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       115 ~kI~VIGIGgaG~-NIVd~l~~~--~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      |||.|||-|..=. .++.-|++.  .+..-+.+.+|.|.+.|+.....+. ++      .+-.|.  ++.      -+.-
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~-~~------~~~~g~--~~~------v~~T   65 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK-IL------FKENYP--EIK------FVYT   65 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH-HH------HHhhCC--CeE------EEEE
Confidence            7999999776521 367777766  3667888999999988875211000 00      000000  000      0011


Q ss_pred             HHHHHHhcCCCEEEEEeecCC
Q 044090          192 VAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      ...+++|++||.||...-.||
T Consensus        66 tdr~eAl~gADfVi~~irvGg   86 (437)
T cd05298          66 TDPEEAFTDADFVFAQIRVGG   86 (437)
T ss_pred             CCHHHHhCCCCEEEEEeeeCC
Confidence            235789999999998887776

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.66  E-value=4.6  Score=41.47  Aligned_cols=98  Identities=18%  Similarity=0.201  Sum_probs=61.3

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCc-hhhHHHHHH
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNP-SVGMNAANE  189 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np-~~G~eaa~e  189 (279)
                      .....|+.|+|.|.+|...+..+...   ++..++++.+...++.......+-+.+... ..|.+.|+.. ....+..+.
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~l---GA~V~v~d~~~~rle~a~~lGa~~v~v~~~-e~g~~~~gYa~~~s~~~~~~  236 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSL---GAIVRAFDTRPEVKEQVQSMGAEFLELDFK-EEGGSGDGYAKVMSEEFIAA  236 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHcCCeEEecccc-ccccccccceeecCHHHHHH
Confidence            34568999999999999999888774   456778888877766532111122333321 1233333322 223444555


Q ss_pred             HHHHHHHHhcCCCEEEEEeecCC
Q 044090          190 SKVAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       190 ~~e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      ..+.+.+.++++|.+|-++-.-|
T Consensus       237 ~~~~~~e~~~~~DIVI~TalipG  259 (511)
T TIGR00561       237 EMELFAAQAKEVDIIITTALIPG  259 (511)
T ss_pred             HHHHHHHHhCCCCEEEECcccCC
Confidence            56667778889999966665555

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=90.53  E-value=0.75  Score=41.34  Aligned_cols=43  Identities=26%  Similarity=0.368  Sum_probs=33.0

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      ......+|.|||+||.|+.++..|...+..  ++..+|-|.-++.
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg--~i~lvD~D~ve~s   66 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVG--NLKLVDFDVVEPS   66 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCEeccc
Confidence            345677999999999999999999986542  4667888754443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=90.52  E-value=0.83  Score=40.21  Aligned_cols=77  Identities=30%  Similarity=0.414  Sum_probs=43.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH---
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK---  191 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~---  191 (279)
                      |||.|||+|-.|.-.+-.|.+.   |.+.+.+|.|.+.++...   ..+..+.           .|.+. ++..+..   
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~---G~~V~g~D~~~~~v~~l~---~g~~p~~-----------E~~l~-~ll~~~~~~~   62 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEK---GHQVIGVDIDEEKVEALN---NGELPIY-----------EPGLD-ELLKENVSAG   62 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHT---TSEEEEE-S-HHHHHHHH---TTSSSS------------CTTHH-HHHHHHHHTT
T ss_pred             CEEEEECCCcchHHHHHHHHhC---CCEEEEEeCChHHHHHHh---hcccccc-----------ccchh-hhhccccccc
Confidence            7999999999999999998884   689999999988665531   1222221           12222 2222222   


Q ss_pred             -----HHHHHHhcCCCEEEEEee
Q 044090          192 -----VAIEEAISGADMIFVTAG  209 (279)
Q Consensus       192 -----e~I~~~Le~~D~vfIvAG  209 (279)
                           ..+.+.++++|.+||+-+
T Consensus        63 ~l~~t~~~~~ai~~adv~~I~Vp   85 (185)
T PF03721_consen   63 RLRATTDIEEAIKDADVVFICVP   85 (185)
T ss_dssp             SEEEESEHHHHHHH-SEEEE---
T ss_pred             cchhhhhhhhhhhccceEEEecC
Confidence                 235666789999998774

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=90.50  E-value=1.2  Score=39.55  Aligned_cols=146  Identities=16%  Similarity=0.238  Sum_probs=80.2

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE  189 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e  189 (279)
                      ....+.+|.|||+||.|+.++..|...+..  ++..+|.|.-.....    .+.+++..+..   ..|..  +...+++.
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg--~i~lvD~d~ve~snl----~rq~~~~~~~~---~iG~~--Ka~~~~~~   83 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGID--SITIVDHRLVSTEDL----GSNFFLDAEVS---NSGMN--RAAASYEF   83 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEECCcCChhcC----cccEecccchh---hcCch--HHHHHHHH
Confidence            345678999999999999999999987653  356788876554432    22333332100   01111  11111110


Q ss_pred             -------------------HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE--------EccCCC
Q 044090          190 -------------------SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI--------ATVPFC  242 (279)
Q Consensus       190 -------------------~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI--------vtlPf~  242 (279)
                                         ..+.+.+.++.+|.|+.+..    + ....-.+.+++++.+++.+..        +...+.
T Consensus        84 L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d----~-~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~p  158 (198)
T cd01485          84 LQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEE----N-YERTAKVNDVCRKHHIPFISCATYGLIGYAFFDFP  158 (198)
T ss_pred             HHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCC----C-HHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEchh
Confidence                               02234455678887765411    1 223345567888876555432        223333


Q ss_pred             CchhHHHHHHHHHHHHHHHh---CCEEEEEec
Q 044090          243 FEGRRRAIQAQEGVANLRNN---VDTLIVIPN  271 (279)
Q Consensus       243 ~Eg~~r~~NA~~gL~~L~e~---aD~vIv~DN  271 (279)
                      .-+..-...|.+.|+-|...   ...++++|.
T Consensus       159 ~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~  190 (198)
T cd01485         159 IAAFLGGVVAQEAIKSISGKFTPLNNLYIYDG  190 (198)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCccCcEEEEEC
Confidence            33445567788888877543   244666664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.39  E-value=1.3  Score=36.29  Aligned_cols=107  Identities=20%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHH---HHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA---NES  190 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa---~e~  190 (279)
                      +.||.|+|+|+-|+.++..|...+.  -++..+|-|.-......    +.+++..+.     .|.  .+...+.   .+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv--~~i~lvD~d~v~~~nl~----r~~~~~~~~-----vG~--~Ka~~~~~~l~~~   68 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGV--GKITLVDDDIVEPSNLN----RQFLYTEED-----VGK--NKAEAAKERLQEI   68 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTT--SEEEEEESSBB-GGGCC----TCTTS-GGG-----TTS--BHHHHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCC--CceeecCCcceeecccc----ccccccccc-----chh--HHHHHHHHHHHHh
Confidence            4699999999999999999999754  35667887655544421    111222111     111  1111111   111


Q ss_pred             --------------HHHHHHHhcCCCEEEEEeecCCCcccC-HHHHHHHHHHHcCCcEEEEEcc
Q 044090          191 --------------KVAIEEAISGADMIFVTAGMGGGTGTG-AAPVIAGIAKSMGILTVGIATV  239 (279)
Q Consensus       191 --------------~e~I~~~Le~~D~vfIvAGLGGGTGSG-~aPvIaeiake~gi~tvaIvtl  239 (279)
                                    .+.+.+.++++|.||.+      +.+- .-..|.+++++.+++.+..-+.
T Consensus        69 np~~~v~~~~~~~~~~~~~~~~~~~d~vi~~------~d~~~~~~~l~~~~~~~~~p~i~~~~~  126 (135)
T PF00899_consen   69 NPDVEVEAIPEKIDEENIEELLKDYDIVIDC------VDSLAARLLLNEICREYGIPFIDAGVN  126 (135)
T ss_dssp             STTSEEEEEESHCSHHHHHHHHHTSSEEEEE------SSSHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred             cCceeeeeeecccccccccccccCCCEEEEe------cCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence                          23445566788877654      3342 3345667888888877766443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=90.36  E-value=4.1  Score=38.76  Aligned_cols=36  Identities=19%  Similarity=0.416  Sum_probs=27.7

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      ..+||.|||.|+.|..++-.|...+. --+...+|.+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~-~~el~L~D~~   40 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGI-ADELVIIDIN   40 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            45699999999999999998887643 2356677764

>PLN00106 malate dehydrogenase

Probab=90.27  E-value=3  Score=40.14  Aligned_cols=83  Identities=23%  Similarity=0.366  Sum_probs=49.3

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH---HHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHH
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA  187 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~---~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa  187 (279)
                      ....||.|||. |..|..++..|..++.- -++..+|-+.   +.|+..+..+..++. +  .      .          
T Consensus        16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~-~el~L~Di~~~~g~a~Dl~~~~~~~~i~-~--~------~----------   75 (323)
T PLN00106         16 APGFKVAVLGAAGGIGQPLSLLMKMNPLV-SELHLYDIANTPGVAADVSHINTPAQVR-G--F------L----------   75 (323)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCC-CEEEEEecCCCCeeEchhhhCCcCceEE-E--E------e----------
Confidence            34469999999 99999999988766532 2556666543   112211111111221 0  0      0          


Q ss_pred             HHHHHHHHHHhcCCCEEEEEeecCCCccc
Q 044090          188 NESKVAIEEAISGADMIFVTAGMGGGTGT  216 (279)
Q Consensus       188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTGS  216 (279)
                        .-+.+.+.+.++|.|++++|.....|.
T Consensus        76 --~~~d~~~~l~~aDiVVitAG~~~~~g~  102 (323)
T PLN00106         76 --GDDQLGDALKGADLVIIPAGVPRKPGM  102 (323)
T ss_pred             --CCCCHHHHcCCCCEEEEeCCCCCCCCC
Confidence              011245678899999999998766553

>PRK00414 gmhA phosphoheptose isomerase; Reviewed

Probab=90.17  E-value=7  Score=34.50  Aligned_cols=61  Identities=15%  Similarity=0.212  Sum_probs=38.0

Q ss_pred             HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090          193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN  271 (279)
Q Consensus       193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN  271 (279)
                      .+...+..-|.+|++.. .|-  |.-...+++.+|+.|+++++|...+.               ..|.+++|.+|.++.
T Consensus       104 ~~~~~~~~~Dv~I~iS~-SG~--t~~~i~~~~~ak~~g~~iI~iT~~~~---------------s~l~~~ad~~l~~~~  164 (192)
T PRK00414        104 YVEAVGREGDVLLGIST-SGN--SGNIIKAIEAARAKGMKVITLTGKDG---------------GKMAGLADIEIRVPH  164 (192)
T ss_pred             HHHHhCCCCCEEEEEeC-CCC--CHHHHHHHHHHHHCCCeEEEEeCCCC---------------ChhHHhCCEEEEeCC
Confidence            34444566677777643 222  22344556788999999999975543               234456777777766

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.97  E-value=0.92  Score=41.58  Aligned_cols=46  Identities=13%  Similarity=0.325  Sum_probs=35.2

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS  156 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s  156 (279)
                      +......||.|+|+||.|+.++..|...+..  ++..+|-|.-.+.+.
T Consensus        19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL   64 (240)
T TIGR02355        19 QEALKASRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNL   64 (240)
T ss_pred             HHHHhCCcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCc
Confidence            3456678999999999999999999987543  455678876665543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=89.96  E-value=0.83  Score=43.47  Aligned_cols=38  Identities=26%  Similarity=0.457  Sum_probs=30.1

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ||+|||+||-||-++..|...+..  ++..+|-|.-++.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg--~I~IvD~D~Ve~SN   38 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFR--NIHVIDMDTIDVSN   38 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecccc
Confidence            689999999999999999987653  44567877666554

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=89.92  E-value=0.89  Score=41.80  Aligned_cols=38  Identities=16%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ||.|||+||.|+.++..|...+..  ++..+|-|.-++.+
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg--~i~ivD~D~Ve~sN   38 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFG--QIHVIDMDTIDVSN   38 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEEcchh
Confidence            689999999999999999987643  34556776655544

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=89.68  E-value=0.8  Score=40.79  Aligned_cols=42  Identities=17%  Similarity=0.347  Sum_probs=30.5

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcce-EEEEe-CcHHHHh
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVE-FWIVN-TDAQAMK  154 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve-~iavN-TD~~~L~  154 (279)
                      ..+||.|||.|..|..++..+.+.+...++ .+++| .+.+.++
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~   46 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLD   46 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHH
Confidence            457999999999999999999877544454 55565 3444443

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=89.66  E-value=5.1  Score=38.16  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=26.2

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      ||.|||.|..|..++-.|...++ .-+++.+|.+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~   33 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGL-FSEIVLIDVN   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            79999999999999999887654 2366667763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=89.38  E-value=3  Score=38.91  Aligned_cols=33  Identities=15%  Similarity=0.314  Sum_probs=27.0

Q ss_pred             EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      |.|||.|..|..++..+...++.  +.+.+|.|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~--eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG--DVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc--EEEEEeCCCc
Confidence            57999999999999988776543  8888888754

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=89.13  E-value=0.78  Score=38.94  Aligned_cols=38  Identities=24%  Similarity=0.410  Sum_probs=29.7

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +||.+||+|-.|..|+.+|.+.   +.+.++.|-+.+.++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~---g~~v~~~d~~~~~~~~   39 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKA---GYEVTVYDRSPEKAEA   39 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHT---TTEEEEEESSHHHHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhc---CCeEEeeccchhhhhh
Confidence            6899999999999999999885   5677888887665543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02602 lactate dehydrogenase

Probab=88.99  E-value=1.8  Score=42.14  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=27.6

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      .||.|||.|..|..++-.|...++ .-++..+|.+.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDL-ADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCC
Confidence            699999999999999998887654 33666777643

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=88.69  E-value=2.1  Score=42.63  Aligned_cols=84  Identities=21%  Similarity=0.421  Sum_probs=51.7

Q ss_pred             ceEEEEeeCcchH-HHHHHHHHc--CCCcceEEEEeCc-HHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          115 AKIKVIGVGGGGS-NAVNRMIES--SMTGVEFWIVNTD-AQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       115 ~kI~VIGIGgaG~-NIVd~l~~~--~~~~ve~iavNTD-~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      +||.|||-|..-. .++..|+..  .+..-+.+.+|.| .+.|+.....+. ++ +     +-.|.  ++.      -+.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~-~~-~-----~~~~~--~~~------v~~   65 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK-RM-V-----KKAGL--PIK------VHL   65 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH-HH-H-----HhhCC--CeE------EEE
Confidence            6999999888755 477777764  3566888999999 787754210000 00 0     00000  000      001


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCC
Q 044090          191 KVAIEEAISGADMIFVTAGMGGG  213 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGG  213 (279)
                      -...+++++++|.||++...||-
T Consensus        66 t~d~~~al~gadfVi~~~~vg~~   88 (419)
T cd05296          66 TTDRREALEGADFVFTQIRVGGL   88 (419)
T ss_pred             eCCHHHHhCCCCEEEEEEeeCCc
Confidence            12368899999999999999884

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=88.66  E-value=0.79  Score=42.58  Aligned_cols=44  Identities=16%  Similarity=0.339  Sum_probs=34.7

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCC--------CcceEEEEeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSM--------TGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~--------~~ve~iavNTD~~~L~~  155 (279)
                      ....||.|||+||-||.++..|.+.+.        .+.++..+|-|.-+..+
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sN   60 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEAN   60 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccch
Confidence            467899999999999999999998641        14577888887665544

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR00441 gmhA phosphoheptose isomerase

Probab=88.41  E-value=10  Score=32.00  Aligned_cols=46  Identities=17%  Similarity=0.152  Sum_probs=28.7

Q ss_pred             HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090          193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF  241 (279)
Q Consensus       193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf  241 (279)
                      ++...+..-|.+|++.. .|-  +...-.+++.+|+.|+++++|...|.
T Consensus        72 ~~~~~~~~~D~~i~iS~-sG~--t~~~~~~~~~a~~~g~~ii~iT~~~~  117 (154)
T TIGR00441        72 QVEALGQKGDVLLGIST-SGN--SKNVLKAIEAAKDKGMKTITLAGKDG  117 (154)
T ss_pred             HHHHhCCCCCEEEEEcC-CCC--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            34445566677777643 222  22344456788999999999965443

Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=88.34  E-value=5.3  Score=37.50  Aligned_cols=36  Identities=19%  Similarity=0.443  Sum_probs=27.8

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA  152 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~  152 (279)
                      ||.|||.|+.|..++..|...+. ..+++.+|-+.+.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D~~~~~   37 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLIDINEEK   37 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCcch
Confidence            89999999999999999987643 1366777765443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00325 malate dehydrogenase; Provisional

Probab=88.32  E-value=4.5  Score=38.92  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=25.9

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      ...||.|||. |..|..++..|...+. ..+...+|-
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di   42 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDI   42 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEec
Confidence            3449999999 9999999988875432 345666665

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=88.16  E-value=4.9  Score=38.51  Aligned_cols=95  Identities=17%  Similarity=0.193  Sum_probs=59.2

Q ss_pred             EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCC-CCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHH
Q 044090          117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVI-PENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIE  195 (279)
Q Consensus       117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~-a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~  195 (279)
                      |.|+|.|..|.-++..|.++.... ++++.+-+.+.++..... ...++..-                 ++--.+.+.+.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~-~v~va~r~~~~~~~~~~~~~~~~~~~~-----------------~~d~~~~~~l~   62 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFE-EVTVADRNPEKAERLAEKLLGDRVEAV-----------------QVDVNDPESLA   62 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE--EEEEEESSHHHHHHHHT--TTTTEEEE-----------------E--TTTHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCC-cEEEEECCHHHHHHHHhhccccceeEE-----------------EEecCCHHHHH
Confidence            789999999999999998764211 777788888876553110 01122111                 11112455689


Q ss_pred             HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEE
Q 044090          196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG  235 (279)
Q Consensus       196 ~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tva  235 (279)
                      ++++++|.|+-+++--      ..+.|++.+-+.++..+-
T Consensus        63 ~~~~~~dvVin~~gp~------~~~~v~~~~i~~g~~yvD   96 (386)
T PF03435_consen   63 ELLRGCDVVINCAGPF------FGEPVARACIEAGVHYVD   96 (386)
T ss_dssp             HHHTTSSEEEE-SSGG------GHHHHHHHHHHHT-EEEE
T ss_pred             HHHhcCCEEEECCccc------hhHHHHHHHHHhCCCeec
Confidence            9999999888765432      567788888888877665

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=88.00  E-value=0.68  Score=37.75  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=59.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      .||+|+|=|..+.+++..+.+.   ++++++|||+.+......-.+++-+.++...         +...+.    ..++|
T Consensus         3 kkvLIanrGeia~r~~ra~r~~---Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~---------~~~~yl----~~e~I   66 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALREL---GIETVAVNSNPDTVSTHVDMADEAYFEPPGP---------SPESYL----NIEAI   66 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHT---TSEEEEEEEGGGTTGHHHHHSSEEEEEESSS---------GGGTTT----SHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHh---CCcceeccCchhcccccccccccceecCcch---------hhhhhc----cHHHH
Confidence            5899999999999999999884   7899999996654332111246666665211         111121    22333


Q ss_pred             HHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEE
Q 044090          195 EEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV  234 (279)
Q Consensus       195 ~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tv  234 (279)
                      .+.+  +++|.++     +|=+.---.+.+++...+.|+..+
T Consensus        67 ~~ia~~~g~~~i~-----pGyg~lse~~~fa~~~~~~gi~fi  103 (110)
T PF00289_consen   67 IDIARKEGADAIH-----PGYGFLSENAEFAEACEDAGIIFI  103 (110)
T ss_dssp             HHHHHHTTESEEE-----STSSTTTTHHHHHHHHHHTT-EES
T ss_pred             hhHhhhhcCcccc-----cccchhHHHHHHHHHHHHCCCEEE
Confidence            3333  2666543     444444567888888777776544

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=87.98  E-value=1  Score=47.41  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=32.6

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .....|++|||+||-||.++..|...+..  ++..||-|.-++.+
T Consensus       335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg--~ItlVD~D~Ve~SN  377 (664)
T TIGR01381       335 RYSQLKVLLLGAGTLGCNVARCLIGWGVR--HITFVDNGKVSYSN  377 (664)
T ss_pred             HHhcCeEEEECCcHHHHHHHHHHHHcCCC--eEEEEcCCEECCCc
Confidence            35588999999999999999999997653  34456776555443

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=87.59  E-value=8.6  Score=36.42  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=27.1

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      |||.|||. |..|..++..|...+. ..+.+++|.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~   35 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRP   35 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECc
Confidence            69999998 9999999999988754 2256677764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.57  E-value=0.6  Score=41.63  Aligned_cols=42  Identities=24%  Similarity=0.517  Sum_probs=32.8

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcc-eEEEEeCc---HHHHh
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGV-EFWIVNTD---AQAMK  154 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~v-e~iavNTD---~~~L~  154 (279)
                      ......+|.|||+|+.|+.|+..|.+.   |+ ++..+|.|   ..+|.
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~   62 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARA---GIGKLILVDFDVVEPSNLN   62 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCCEEcccccc
Confidence            345678999999999999999999886   45 46678888   44444

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=87.44  E-value=1.3  Score=39.84  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      ....+.+|.|||+||.|+.++..|...+..  ++..+|-|.-...
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~s   59 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVG--KLGLVDDDVVELS   59 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEEcCc
Confidence            456678999999999999999999987542  4566777655443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=87.40  E-value=1.2  Score=43.63  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=34.0

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ....+.||.|||+||.|+.++..|...+..  ++..+|-|.-.+.+
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg--~i~lvD~D~ve~sN   81 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVG--TLGIVEFDVVDESN   81 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecCcc
Confidence            445678999999999999999999987653  45567877655544

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.31  E-value=1.2  Score=41.72  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=26.6

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      ..+|||.|||.|..|..++..|.+.+   .+..+.|.
T Consensus         2 ~~~m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~r   35 (308)
T PRK14619          2 TQPKTIAILGAGAWGSTLAGLASANG---HRVRVWSR   35 (308)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCC---CEEEEEeC
Confidence            35689999999999999999998864   34444554

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=87.12  E-value=6.5  Score=37.65  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=26.7

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      |||.|||. |..|..++-.|...++ ..+.+.+|.+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecC
Confidence            69999999 9999999988876654 3466667664

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=86.98  E-value=2  Score=41.30  Aligned_cols=39  Identities=23%  Similarity=0.466  Sum_probs=29.8

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS  156 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s  156 (279)
                      ||.|||+||-|+.++..|...+..  ++..+|-|.-.+.+.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg--~ItIvD~D~Ve~sNL   39 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFG--EIHIIDLDTIDLSNL   39 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCC--eEEEEcCCCcchhhc
Confidence            689999999999999999987653  344567776665543

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK07411 hypothetical protein; Validated

Probab=86.82  E-value=1.7  Score=42.68  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCc
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC  168 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~  168 (279)
                      +......+|.|||+||-|+.++..|...+..  ++..+|-|.-.+.+.    .++++++.
T Consensus        33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg--~l~lvD~D~ve~sNL----~RQ~l~~~   86 (390)
T PRK07411         33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIG--RIGIVDFDVVDSSNL----QRQVIHGT   86 (390)
T ss_pred             HHHHhcCcEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEeccccc----CcCcccCh
Confidence            4557788999999999999999999987543  345678776666553    23455444

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=86.75  E-value=6  Score=38.23  Aligned_cols=34  Identities=26%  Similarity=0.499  Sum_probs=26.1

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      +||.|||.|+.|...+-.|....+ +-|+..+|-+
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~-~~el~LiDi~   34 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGL-GSELVLIDIN   34 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccc-cceEEEEEcc
Confidence            589999999999999988854433 3366666665

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=86.51  E-value=5.7  Score=38.01  Aligned_cols=78  Identities=23%  Similarity=0.347  Sum_probs=45.9

Q ss_pred             eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH---HHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~---~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ||.|||. |..|..++-.|...+. ..+.+.+|.+.   ++|+..+.....++.- .       .+.             
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~a~g~a~DL~~~~~~~~i~~-~-------~~~-------------   58 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAGAAGVAADLSHIPTAASVKG-F-------SGE-------------   58 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCCCcEEEchhhcCCcCceEEE-e-------cCC-------------
Confidence            7999999 9999999998876542 34666676543   1111111111112210 0       000             


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcc
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTG  215 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTG  215 (279)
                      +...+.++++|.|++++|..-..|
T Consensus        59 ~~~~~~~~daDivvitaG~~~~~g   82 (312)
T TIGR01772        59 EGLENALKGADVVVIPAGVPRKPG   82 (312)
T ss_pred             CchHHHcCCCCEEEEeCCCCCCCC
Confidence            113457889999999998876655

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=86.28  E-value=7.8  Score=37.24  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=28.8

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeC
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNT  148 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~----ve~iavNT  148 (279)
                      +..||.|||. |..|.+++-.|...++-+    .+...+|.
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   42 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI   42 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence            4679999999 999999999998776422    37777776

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain

Probab=86.14  E-value=2  Score=38.01  Aligned_cols=81  Identities=21%  Similarity=0.266  Sum_probs=44.8

Q ss_pred             HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEE
Q 044090          190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVI  269 (279)
Q Consensus       190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~  269 (279)
                      ..++|.++++. ..-+++.|+.-|.-.=++-++.++-++++-+.++++ +||...+..-....++-+..|.+.+|.++++
T Consensus        31 L~~~i~~lie~-G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v-~Pf~~q~~~W~~~~q~~y~~il~~aD~v~~v  108 (177)
T PF06908_consen   31 LKKQIIELIEE-GVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALV-LPFENQGNNWNEANQERYQSILEQADFVVVV  108 (177)
T ss_dssp             HHHHHHHHHTT-T--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEE-ESSB-TTTTS-HHHHHHHHHHHHH-SEEEES
T ss_pred             HHHHHHHHHHC-CCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEE-EcccchhhcCCHHHHHHHHHHHHhCCEEEEc
Confidence            44557777764 333444444444444445555555556664444433 7997666554556677789999999999988


Q ss_pred             ech
Q 044090          270 PND  272 (279)
Q Consensus       270 DNd  272 (279)
                      ..+
T Consensus       109 s~~  111 (177)
T PF06908_consen  109 SER  111 (177)
T ss_dssp             SSS
T ss_pred             cCC
Confidence            764

; PDB: 2NX2_A.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=85.97  E-value=4  Score=40.11  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=32.5

Q ss_pred             ccCCCCCCCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090          103 LRQSSVPNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA  152 (279)
Q Consensus       103 ~~~~~~~~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~  152 (279)
                      +..++......++||.|||. |..|..+++.|.++  +.++..++-.+..+
T Consensus        27 ~~~~~~~~~~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~sa   75 (381)
T PLN02968         27 SSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKA   75 (381)
T ss_pred             ccCCCccccccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhc
Confidence            33333333356779999999 77888888877776  56777677655443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=85.86  E-value=2.1  Score=41.83  Aligned_cols=46  Identities=20%  Similarity=0.352  Sum_probs=35.3

Q ss_pred             CCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       108 ~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .+....+.+|.|||+||.|+.++..|...+.  -++..+|-|.-.+.+
T Consensus        35 ~q~~l~~~~VliiG~GglG~~v~~~La~~Gv--g~i~ivD~D~ve~sN   80 (370)
T PRK05600         35 QQERLHNARVLVIGAGGLGCPAMQSLASAGV--GTITLIDDDTVDVSN   80 (370)
T ss_pred             HHHHhcCCcEEEECCCHHHHHHHHHHHHcCC--CEEEEEeCCEEcccc
Confidence            3456777899999999999999999998654  245667887655544

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=85.85  E-value=1.5  Score=45.95  Aligned_cols=42  Identities=26%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             CCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       108 ~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      .+..+...||.|||.|+.|+++|-.|++.+...+.  +++||..
T Consensus       123 rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~--~vd~D~v  164 (637)
T TIGR03693       123 KFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFH--AIVTDAE  164 (637)
T ss_pred             hhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEE--EEecccc
Confidence            44557899999999999999999999998765444  5666544

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=85.70  E-value=1.8  Score=38.38  Aligned_cols=145  Identities=16%  Similarity=0.188  Sum_probs=77.0

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE  189 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e  189 (279)
                      ......||.|||+|+-|+.++..|...+..  ++..+|.|.-+....    .+.+++..+.     .|.  .+.+.+++.
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg--~i~lvD~d~ve~snL----~rqfl~~~~d-----iG~--~Ka~a~~~~   83 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIG--SLTILDDRTVTEEDL----GAQFLIPAED-----LGQ--NRAEASLER   83 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCC--EEEEEECCcccHhhC----CCCccccHHH-----cCc--hHHHHHHHH
Confidence            345677999999999999999999986542  345678875544332    1233333221     111  111111111


Q ss_pred             H----------------HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCC----------C
Q 044090          190 S----------------KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC----------F  243 (279)
Q Consensus       190 ~----------------~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~----------~  243 (279)
                      .                .+...+.++++|.|+.+..    . -...-.+.+++++.+++.+..-+.-+.          .
T Consensus        84 L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~----~-~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~~~p~  158 (197)
T cd01492          84 LRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATEL----S-RAELVKINELCRKLGVKFYATGVHGLFGFVFADLLAPV  158 (197)
T ss_pred             HHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCC----C-HHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEeccccH
Confidence            1                0112344578887776421    1 122344567778876555443322221          1


Q ss_pred             chhHHHHHHHHHHHHHHHhC---CEEEEEech
Q 044090          244 EGRRRAIQAQEGVANLRNNV---DTLIVIPND  272 (279)
Q Consensus       244 Eg~~r~~NA~~gL~~L~e~a---D~vIv~DNd  272 (279)
                      -+..-...|.+.++-|...-   ..++.+|-.
T Consensus       159 ~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~  190 (197)
T cd01492         159 AAVVGGILAQDVINALSKRESPLNNFFVFDGE  190 (197)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCccCcEEEEECC
Confidence            23445667788888777542   335556543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=85.70  E-value=2.5  Score=39.80  Aligned_cols=45  Identities=22%  Similarity=0.347  Sum_probs=34.4

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .......+|.|||+||.|+.++..|.+.+..  ++..+|-|.-...+
T Consensus        25 ~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg--~itLiD~D~V~~sN   69 (268)
T PRK15116         25 LQLFADAHICVVGIGGVGSWAAEALARTGIG--AITLIDMDDVCVTN   69 (268)
T ss_pred             HHHhcCCCEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCEecccc
Confidence            3456678999999999999999999997643  45567777655443

>PRK04148 hypothetical protein; Provisional

Probab=85.66  E-value=2.1  Score=36.50  Aligned_cols=38  Identities=18%  Similarity=0.389  Sum_probs=32.5

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +.|+.+||+| .|.+++..|.+   .+.+.+++|.|..+.+.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~   54 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEK   54 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHH
Confidence            4789999999 99999999886   36799999999887764

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=85.62  E-value=7  Score=37.70  Aligned_cols=59  Identities=19%  Similarity=0.298  Sum_probs=37.7

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc--------CCCCCCCeEEcCccc
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV--------SPVIPENRLQIGCEL  170 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~--------s~v~a~~ri~iG~~~  170 (279)
                      +....||.|+|+|+.|..++-.++.+++. -|...+|-+...|+.        +......++..+.++
T Consensus        17 ~~~~~KItVVG~G~VGmAca~siL~k~La-del~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy   83 (332)
T KOG1495|consen   17 EFKHNKITVVGVGQVGMACAISILLKGLA-DELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY   83 (332)
T ss_pred             cccCceEEEEccchHHHHHHHHHHHhhhh-hceEEEecCcchhhhhhhhhccccccccCCceEecCcc
Confidence            34578999999999999999888887652 344555554432222        222234566666543

>PRK13936 phosphoheptose isomerase; Provisional

Probab=85.47  E-value=24  Score=31.19  Aligned_cols=46  Identities=9%  Similarity=0.077  Sum_probs=28.2

Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccC
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP  240 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlP  240 (279)
                      +++...+..-|.+|++..-| .  |--...+++.+|+.|.++++|...+
T Consensus       103 ~~~a~~~~~~Dv~i~iS~sG-~--t~~~~~~~~~ak~~g~~iI~IT~~~  148 (197)
T PRK13936        103 KQVRALGQPGDVLLAISTSG-N--SANVIQAIQAAHEREMHVVALTGRD  148 (197)
T ss_pred             HHHHHhCCCCCEEEEEeCCC-C--cHHHHHHHHHHHHCCCeEEEEECCC
Confidence            33445556778777764322 2  1223334677889999999996533

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=85.44  E-value=1.7  Score=39.83  Aligned_cols=41  Identities=24%  Similarity=0.417  Sum_probs=31.8

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      ..+.+|.|||+||.|+.++..|.+.+.  -++..+|-|.-...
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GV--g~i~LvD~D~V~~s   49 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGV--GKLTLIDFDVVCVS   49 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCEECch
Confidence            456799999999999999999998754  25566777654443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=85.11  E-value=9.9  Score=36.44  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=27.5

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeC
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNT  148 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~----~ve~iavNT  148 (279)
                      ..||.|||. |..|..++-.|...++-    ..+...+|.
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            359999999 99999999998876542    246677776

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=84.93  E-value=24  Score=34.83  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=33.2

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .+||.|||+|-.|..++-.|.+.   +.+.+.+|.|.+.++.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~---G~~V~~~D~~~~~v~~   41 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASR---QKQVIGVDINQHAVDT   41 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhC---CCEEEEEeCCHHHHHH
Confidence            47999999999999999999885   5678889998876664

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=84.91  E-value=3.8  Score=38.68  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=28.0

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      |||.|||.|..|..++-.|...++ ..+.+.+|.+.+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~-~~ev~l~D~~~~   36 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGL-ASEIVLVDINKA   36 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-CCEEEEEECCch
Confidence            689999999999999998887643 245667776543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>CHL00194 ycf39 Ycf39; Provisional

Probab=84.70  E-value=15  Score=33.92  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=24.8

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      |||.|+|. |-.|..++.+|.+++   .+..++.-+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R~   33 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVRN   33 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEcC
Confidence            68999995 999999999999864   455555433

>PRK15076 alpha-galactosidase; Provisional

Probab=84.65  E-value=3.3  Score=41.30  Aligned_cols=83  Identities=22%  Similarity=0.369  Sum_probs=47.3

Q ss_pred             ceEEEEeeCcchHH--HHHHHH-HcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSN--AVNRMI-ESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       115 ~kI~VIGIGgaG~N--IVd~l~-~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      +||.|||.|..|.-  ++..+. ...+.+.+.+.+|.|.+.++....    .  +-... .-.+.  +..+      ..-
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~----l--~~~~~-~~~~~--~~~i------~~t   66 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEI----V--ARKLA-ESLGA--SAKI------TAT   66 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHH----H--HHHHH-HhcCC--CeEE------EEE
Confidence            69999999987744  333554 234556789999999877763100    0  00000 00000  0000      001


Q ss_pred             HHHHHHhcCCCEEEEEeecCC
Q 044090          192 VAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      ....+++++||.||++++.||
T Consensus        67 tD~~eal~dADfVv~ti~vg~   87 (431)
T PRK15076         67 TDRREALQGADYVINAIQVGG   87 (431)
T ss_pred             CCHHHHhCCCCEEeEeeeeCC
Confidence            124678899999999999985

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=84.46  E-value=9.8  Score=34.97  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=26.6

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEE-EeCcH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWI-VNTDA  150 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~ia-vNTD~  150 (279)
                      +||.|||+ |..|..++..+.+.  ++++..+ ++.+.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~   37 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPG   37 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCC
Confidence            79999999 99999999877654  4678765 56554

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=84.40  E-value=2.1  Score=32.54  Aligned_cols=40  Identities=28%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcHHHHhc
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDAQAMKV  155 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NTD~~~L~~  155 (279)
                      ||.|||.|..|..++..|.+.+....+.+.+ +-+.+.+..
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~   41 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAE   41 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHH
Confidence            7999999999999999999987544666645 666665543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK05442 malate dehydrogenase; Provisional

Probab=84.23  E-value=10  Score=36.51  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeC
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNT  148 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~----ve~iavNT  148 (279)
                      +..||.|||. |..|..++-.|...++-+    .++..+|.
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi   43 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI   43 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence            4569999999 999999998887765422    46777776

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=84.21  E-value=3.2  Score=36.03  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=27.3

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      |+.|||+|+.|+.++..|.+.+..  ++..+|-|.-
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg--~i~lvD~D~v   34 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVG--NLKLVDFDVV   34 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCEE
Confidence            689999999999999999886532  3666788763

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06545 prephenate dehydrogenase; Validated

Probab=83.58  E-value=1.6  Score=41.98  Aligned_cols=37  Identities=14%  Similarity=0.154  Sum_probs=27.3

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      +|.|||.|-.|..++..|.+.+. .+..+..|-+...+
T Consensus         2 ~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~~~~~~   38 (359)
T PRK06545          2 TVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDPSAAQL   38 (359)
T ss_pred             eEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCCCHHHH
Confidence            79999999999999999988653 34445555444433

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=83.58  E-value=2.5  Score=40.14  Aligned_cols=44  Identities=14%  Similarity=0.259  Sum_probs=33.0

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ....+.+++|+|+||.|+-|+..|...+..  ++..+|.|.-.+..
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg--~itI~D~d~ve~sn   58 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVK--SVTLHDTKPCSWSD   58 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCCccchhh
Confidence            345677999999999999999999986553  23457877655543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.55  E-value=7.5  Score=37.70  Aligned_cols=103  Identities=17%  Similarity=0.250  Sum_probs=62.3

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCC-CCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v-~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      ...++|.|+|.|..|..+++.|.+   .+.++++++.|.+.++...- ..+-.+..|..        .++          
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~---~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~--------~~~----------  287 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEK---EGYSVKLIERDPERAEELAEELPNTLVLHGDG--------TDQ----------  287 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHCCCCeEEECCC--------CCH----------
Confidence            357899999999999999999987   46788999999876654210 01122333321        111          


Q ss_pred             HHHHH-HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCc-EEEEEccCC
Q 044090          191 KVAIE-EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL-TVGIATVPF  241 (279)
Q Consensus       191 ~e~I~-~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~-tvaIvtlPf  241 (279)
                       +.++ ..++.+|.|+++..   .  ....-.++.++++++.. +++.+..|.
T Consensus       288 -~~L~~~~~~~a~~vi~~~~---~--~~~n~~~~~~~~~~~~~~ii~~~~~~~  334 (453)
T PRK09496        288 -ELLEEEGIDEADAFIALTN---D--DEANILSSLLAKRLGAKKVIALVNRPA  334 (453)
T ss_pred             -HHHHhcCCccCCEEEECCC---C--cHHHHHHHHHHHHhCCCeEEEEECCcc
Confidence             2222 24678898876432   1  12334445667887643 455555554

>PRK13937 phosphoheptose isomerase; Provisional

Probab=83.39  E-value=30  Score=30.21  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             CCCceEEEEeeCcchHHH---HHHHHH-cC--CCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090          112 NNEAKIKVIGVGGGGSNA---VNRMIE-SS--MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMN  185 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NI---Vd~l~~-~~--~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~e  185 (279)
                      .+..||-++|.|..+...   +..+.. ..  ..+...+++..|...+....          .+          +  +. 
T Consensus        36 ~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~----------~d----------~--~~-   92 (188)
T PRK13937         36 ANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIG----------ND----------Y--GF-   92 (188)
T ss_pred             HCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHh----------cc----------C--CH-
Confidence            356689999999887643   223331 21  23455555555655432210          00          0  00 


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090          186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF  241 (279)
Q Consensus       186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf  241 (279)
                       .......+...+..-|.+|++. -.|-|  --.--+++.+|+.|+++++|...|.
T Consensus        93 -~~~~~~~~~~~~~~~Dl~i~iS-~sG~t--~~~~~~~~~ak~~g~~~I~iT~~~~  144 (188)
T PRK13937         93 -ERVFSRQVEALGRPGDVLIGIS-TSGNS--PNVLAALEKARELGMKTIGLTGRDG  144 (188)
T ss_pred             -HHHHHHHHHhhCCCCCEEEEEe-CCCCc--HHHHHHHHHHHHCCCeEEEEeCCCC
Confidence             0011223334455667776663 33322  2333346778889999999975443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=83.13  E-value=12  Score=35.24  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=25.0

Q ss_pred             EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      |.|||.|..|..++-.+...++ --++..+|.+.
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~-~~el~l~D~~~   33 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGL-ASELVLVDVNE   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            5799999999999988776543 23677778754

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=83.00  E-value=3.8  Score=41.41  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS  156 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s  156 (279)
                      |||.|||.|-.|.-.+-.|.+.+ .+++.+.+|.|.+.++..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD~~~~~v~~l   42 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVDISVPRIDAW   42 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHH
Confidence            79999999999999998887754 267888999998887764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=82.97  E-value=2.6  Score=37.45  Aligned_cols=43  Identities=16%  Similarity=0.377  Sum_probs=35.3

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .+..++++.|+|+|..|..++.+|.+.   +.+.++.|.+.+.+..
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~---G~~Vvv~D~~~~~~~~   66 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHLLEE---GAKLIVADINEEAVAR   66 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCCHHHHHH
Confidence            346778999999999999999999884   6688888888776554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=82.82  E-value=38  Score=31.52  Aligned_cols=40  Identities=18%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQA  152 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~  152 (279)
                      +..+||.|||+|..|..++..|.+. ..+++..+ .|.+.+.
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr~~~~   44 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVRDPQR   44 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECCCHHH
Confidence            4568999999999999999988763 34677654 4666544

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=82.68  E-value=3.8  Score=41.20  Aligned_cols=40  Identities=15%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCC---CcceEEEEeCcHHHHhc
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSM---TGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~---~~ve~iavNTD~~~L~~  155 (279)
                      |+.|||+||.||-++..|...+.   .+-++..+|-|.-++.+
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SN   43 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSN   43 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccc
Confidence            68999999999999999998764   12366677877666554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK13938 phosphoheptose isomerase; Provisional

Probab=82.45  E-value=36  Score=30.41  Aligned_cols=102  Identities=15%  Similarity=0.204  Sum_probs=53.0

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcC------CCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESS------MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMN  185 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~------~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~e  185 (279)
                      .++.||.++|+|+.|....+.-.+--      .+....+++..|...+...          +          ++.    .
T Consensus        43 ~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~----------~----------nd~----~   98 (196)
T PRK13938         43 RAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAV----------A----------NDY----D   98 (196)
T ss_pred             HCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHh----------h----------ccc----c
Confidence            35679999999999887654443321      1123334443343322211          0          000    0


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccC
Q 044090          186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP  240 (279)
Q Consensus       186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlP  240 (279)
                      ..+-...++...+..-|++|++ +..|-|  --.-.+++.+|+.|+++++|...|
T Consensus        99 ~~~~~~~~~~~~~~~~DllI~i-S~SG~t--~~vi~a~~~Ak~~G~~vI~iT~~~  150 (196)
T PRK13938         99 YDTVFARALEGSARPGDTLFAI-STSGNS--MSVLRAAKTARELGVTVVAMTGES  150 (196)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEE-cCCCCC--HHHHHHHHHHHHCCCEEEEEeCCC
Confidence            1122234445555666766665 333332  122334577888999999997544

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=82.18  E-value=8.1  Score=37.23  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=27.2

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      +||.|+|.|..|-++++.+.++  ++++..+++.
T Consensus         2 ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d   33 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAK   33 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcC--CCcEEEEEEC
Confidence            6999999999999999888764  6789888764

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=82.18  E-value=3  Score=40.39  Aligned_cols=43  Identities=28%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      ......+|.|||+||.|+.++..|...+..  ++..+|-|.-.+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg--~i~lvD~d~v~~s  173 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVG--TLGIVDHDVVDRS  173 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEecch
Confidence            346778999999999999999999887643  4566777754433

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=82.17  E-value=6.8  Score=38.23  Aligned_cols=38  Identities=29%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      |||.|||+|-.|.-++..|.+.   +.+.+.+|.|.+.++.
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~---G~~V~~~d~~~~~v~~   38 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADL---GHEVTGVDIDQEKVDK   38 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhc---CCeEEEEECCHHHHHH
Confidence            5899999999999999999874   5577888888776654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=82.11  E-value=5.2  Score=39.61  Aligned_cols=83  Identities=24%  Similarity=0.392  Sum_probs=47.5

Q ss_pred             ceEEEEeeCcchHH--HHHHHHHc-CCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSN--AVNRMIES-SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       115 ~kI~VIGIGgaG~N--IVd~l~~~-~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      +||.|||.|..|..  ++..+... ...+.+.+.+|.|.+.++....    .+   .......+...+.        ..-
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~----~~---~~~~~~~~~~~~I--------~~t   65 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEI----LA---KKIVEELGAPLKI--------EAT   65 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHH----HH---HHHHHhcCCCeEE--------EEe
Confidence            58999999987876  33345544 4566788889998877654210    00   0000000000000        001


Q ss_pred             HHHHHHhcCCCEEEEEeecCC
Q 044090          192 VAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      ..+++++++||+|+++...||
T Consensus        66 tD~~eal~~AD~Vi~ai~~~~   86 (423)
T cd05297          66 TDRREALDGADFVINTIQVGG   86 (423)
T ss_pred             CCHHHHhcCCCEEEEeeEecC
Confidence            224678899999999998654

linked to 3D####ucture

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=81.93  E-value=20  Score=33.89  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=26.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      +||.|||.|..|.-++-.+...+.-  +.+.+|.+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~--~VvlvDi~   34 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELA--DLVLLDVV   34 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCC
Confidence            6999999999999999988876542  66677763

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=81.88  E-value=23  Score=31.46  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=28.3

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      ...++|+|+|. |+.|..++.+|.+.   +.+.+++.-+...+
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~---g~~V~~~~R~~~~~   54 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAK---GFAVKAGVRDVDKA   54 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhC---CCEEEEEecCHHHH
Confidence            34579999996 88999999999885   45666654444433

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=81.80  E-value=11  Score=37.39  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=24.2

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCc
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG  140 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~  140 (279)
                      +..||.|||. |..|.+++-.|...++-+
T Consensus        43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~   71 (387)
T TIGR01757        43 KTVNVAVSGAAGMISNHLLFMLASGEVFG   71 (387)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccC
Confidence            3589999999 999999999998887643

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.68  E-value=7.1  Score=38.18  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=24.6

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      .|+.|||+|++|-.++..|.+.   |.+....|.
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~---G~~V~~~D~   31 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQ---GWEVVVSDR   31 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHC---CCEEEEECC
Confidence            4799999999999998877764   566666664

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=81.58  E-value=5.7  Score=35.45  Aligned_cols=40  Identities=20%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             eEEEEeeCcchHH-HHHHHHHc--CCCcceEEEEeCcHHHHhc
Q 044090          116 KIKVIGVGGGGSN-AVNRMIES--SMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       116 kI~VIGIGgaG~N-IVd~l~~~--~~~~ve~iavNTD~~~L~~  155 (279)
                      ||.|||-|..-.- .+..++..  .+...+++.+|.|.+.|+.
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~   43 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEI   43 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHH
Confidence            7999997776554 33333333  3566788899999998875

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK14851 hypothetical protein; Provisional

Probab=81.54  E-value=3.4  Score=43.70  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=34.8

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +....+.+|.|||+||.|+.++..|...+.  -++..+|-|.-.+.+
T Consensus        38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV--G~l~LvD~D~ve~sN   82 (679)
T PRK14851         38 QERLAEAKVAIPGMGGVGGVHLITMVRTGI--GRFHIADFDQFEPVN   82 (679)
T ss_pred             HHHHhcCeEEEECcCHHHHHHHHHHHHhCC--CeEEEEcCCEecccc
Confidence            345678899999999999999999999765  245667776655544

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=81.51  E-value=4.9  Score=40.83  Aligned_cols=40  Identities=15%  Similarity=0.287  Sum_probs=34.6

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS  156 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s  156 (279)
                      +-.+.|+|.|.-|.+++++|.++   +.++++||.|.+..+..
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~d~~~~~~~  456 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAA---GIPLVVIETSRTRVDEL  456 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHC---CCCEEEEECCHHHHHHH
Confidence            56899999999999999999874   56899999998876653

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=81.37  E-value=5.5  Score=39.03  Aligned_cols=38  Identities=26%  Similarity=0.423  Sum_probs=31.7

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCC------CcceEEEEeCc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSM------TGVEFWIVNTD  149 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~------~~ve~iavNTD  149 (279)
                      .+++||.|||-|.-|.-++..+.+...      ..+..|..|.+
T Consensus         9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~   52 (365)
T PTZ00345          9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI   52 (365)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence            567899999999999999999987642      36788888875

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=81.35  E-value=13  Score=36.71  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=25.8

Q ss_pred             CCCceEEEEeeCcchHH-HHHHHHHcCCCcceEEEEeC
Q 044090          112 NNEAKIKVIGVGGGGSN-AVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~N-IVd~l~~~~~~~ve~iavNT  148 (279)
                      ....+|.|||+|+.|.. ++..|.+   .|.+..+.|.
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~---~G~~V~~~D~   39 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLN---LGYKVSGSDL   39 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHh---CCCeEEEECC
Confidence            34568999999999999 5666665   4677777665

>PRK08818 prephenate dehydrogenase; Provisional

Probab=81.29  E-value=2.5  Score=41.45  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=27.9

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      ..++|.|||+ |..|+.++..|.+.  .+.+.+.+|.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~--~~~~V~g~D~   37 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTR--MQLEVIGHDP   37 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhc--CCCEEEEEcC
Confidence            3579999999 99999999999875  2667777765

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=81.15  E-value=2.3  Score=36.41  Aligned_cols=110  Identities=18%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEc--CcccccCCCCCCCchhhHHHHH
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQI--GCELTRGLGAGGNPSVGMNAAN  188 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~i--G~~~t~G~GaG~np~~G~eaa~  188 (279)
                      .....|+.|+|.|-+|..++.-+...   +++...++.....++.......+.+.+  +....   +...+.+.-.+..+
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~l---Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~   90 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGL---GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLE---RKDFDKADYYEHPE   90 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHT---T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTT---SB-CCHHHCHHHCC
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHC---CCEEEeccCCHHHHHhhhcccCceEEEccccccc---ccccchhhhhHHHH
Confidence            34568999999999999999988874   678888998776665421111233333  12111   11134444445555


Q ss_pred             HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHH--HHHHHcC
Q 044090          189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIA--GIAKSMG  230 (279)
Q Consensus       189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIa--eiake~g  230 (279)
                      .....+.+.+..+|.|+..+-.-|.-    +|.|.  +.+++|.
T Consensus        91 ~~~~~f~~~i~~~d~vI~~~~~~~~~----~P~lvt~~~~~~m~  130 (168)
T PF01262_consen   91 SYESNFAEFIAPADIVIGNGLYWGKR----APRLVTEEMVKSMK  130 (168)
T ss_dssp             HHHHHHHHHHHH-SEEEEHHHBTTSS-------SBEHHHHHTSS
T ss_pred             HhHHHHHHHHhhCcEEeeecccCCCC----CCEEEEhHHhhccC
Confidence            66677888999999887755444433    67664  6777775

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.15  E-value=11  Score=36.79  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=28.4

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      ..+.++.|+|.|+.|..++..|.+.   |.+.++++.+
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~---G~~V~~~d~~   37 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKL---GAKVILTDEK   37 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC
Confidence            3567999999999999999999885   5676777664

>PRK08507 prephenate dehydrogenase; Validated

Probab=80.96  E-value=2.7  Score=38.53  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=31.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      |||.|||.|..|..++..|.+.+. ..+.+++|.+.+.++
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~   39 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLK   39 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHH
Confidence            589999999999999999987653 346777888776654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=80.96  E-value=4.6  Score=37.98  Aligned_cols=41  Identities=10%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      +..+.++.|||.|.+|..++..+...+   .+.+++|.+.+.+.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R~~~~~~  188 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALG---ARVFVGARSSADLA  188 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCC---CEEEEEeCCHHHHH
Confidence            556789999999999999999998754   57777888766543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=80.42  E-value=2.8  Score=37.88  Aligned_cols=40  Identities=10%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCC-CcceEEEE-eCcHHHHh
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSM-TGVEFWIV-NTDAQAMK  154 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~-~~ve~iav-NTD~~~L~  154 (279)
                      |||.+||+|..|..|+..|.+.+. ...++++. |.+.+..+
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~   42 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD   42 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH
Confidence            689999999999999999998753 33466777 76665543

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=80.38  E-value=14  Score=35.36  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=26.3

Q ss_pred             eEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeCc
Q 044090          116 KIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNTD  149 (279)
Q Consensus       116 kI~VIGI-GgaG~NIVd~l~~~~~~----~ve~iavNTD  149 (279)
                      ||.|||. |..|..++..|...++-    ..+...+|.+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~   39 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIP   39 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecC
Confidence            6899999 99999999998876642    2356677763

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=80.27  E-value=2.3  Score=40.34  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=28.5

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      |+|.+||+|-.|.|+|.+++.++   -++++.|-|+.+.
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD~n~~av   36 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYDVNQTAV   36 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCC---CeEEEEcCCHHHH
Confidence            68999999999999999999864   4666666655443

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=80.18  E-value=6.7  Score=38.97  Aligned_cols=41  Identities=15%  Similarity=0.263  Sum_probs=31.7

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA  152 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~  152 (279)
                      .+..+.++.|||.|++|.-++..|.+.+.  .+++.+|-+...
T Consensus       177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~--~~I~V~nRt~~r  217 (414)
T PRK13940        177 DNISSKNVLIIGAGQTGELLFRHVTALAP--KQIMLANRTIEK  217 (414)
T ss_pred             cCccCCEEEEEcCcHHHHHHHHHHHHcCC--CEEEEECCCHHH
Confidence            34667899999999999999999987543  356778876443

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=80.16  E-value=3.4  Score=39.56  Aligned_cols=88  Identities=15%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAAN  188 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~----~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~  188 (279)
                      ..||.|+|. |..|..++..|...++-    +.+.+++|.+.. .....   ...+-+-.-      +  .|..+ ..  
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~-~~~~~---g~~~Dl~d~------~--~~~~~-~~--   66 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA-LKALE---GVVMELQDC------A--FPLLK-SV--   66 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc-ccccc---ceeeehhhc------c--ccccC-Cc--
Confidence            468999999 99999999999887642    357777876432 11110   111111100      0  00000 00  


Q ss_pred             HHHHHHHHHhcCCCEEEEEeecCCCccc
Q 044090          189 ESKVAIEEAISGADMIFVTAGMGGGTGT  216 (279)
Q Consensus       189 e~~e~I~~~Le~~D~vfIvAGLGGGTGS  216 (279)
                      .......+.+++||.|+++||.--..|-
T Consensus        67 ~~~~~~~~~l~~aDiVI~tAG~~~~~~~   94 (325)
T cd01336          67 VATTDPEEAFKDVDVAILVGAMPRKEGM   94 (325)
T ss_pred             eecCCHHHHhCCCCEEEEeCCcCCCCCC
Confidence            0113355678899999999999755543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=80.09  E-value=21  Score=34.20  Aligned_cols=95  Identities=17%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHH-HhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA-MKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~-L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      .+|+|+|.|. |-.|.+++.+|.+.   +.+.++++-.... +.....  ...+..+.           .        ..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~---G~~V~~v~r~~~~~~~~~~~--~~~~~~~D-----------l--------~d   75 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAE---GHYIIASDWKKNEHMSEDMF--CHEFHLVD-----------L--------RV   75 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhC---CCEEEEEEeccccccccccc--cceEEECC-----------C--------CC
Confidence            5689999998 99999999999985   5577776532111 110000  01122111           0        11


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCccc-------------CHHHHHHHHHHHcCC
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGT-------------GAAPVIAGIAKSMGI  231 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGS-------------G~aPvIaeiake~gi  231 (279)
                      .+.+.+.++++|.||-+++..++.+.             -++..|++.+++.++
T Consensus        76 ~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~v  129 (370)
T PLN02695         76 MENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGV  129 (370)
T ss_pred             HHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCC
Confidence            23455666789999888876554332             123445677777664

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=80.04  E-value=3.4  Score=38.11  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=31.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      |||.|||.|..|..++..|.+.   +.+.+++|.+.+.++.
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~   38 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCER   38 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHH
Confidence            5899999999999999999875   4577888887766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
2vam_A	382	Ftsz B. Subtilis Length = 382		2e-35
4e6e_A	314	Crystal Structure Of A Putative Cell Division Prote		2e-35
2rhh_A	325	Synthetic Gene Encoded Bacillus Subtilis Ftsz With		3e-35
3vo8_A	392	Staphylococcus Aureus Ftsz Gdp-Form Length = 392		3e-34
4dxd_A	396	Staphylococcal Aureus Ftsz In Complex With 723 Leng		3e-34
3voa_A	308	Staphylococcus Aureus Ftsz 12-316 Gdp-Form Length =		7e-34
1rlu_A	382	Mycobacterium Tuberculosis Ftsz In Complex With Gtp		2e-33
2q1x_A	379	Crystal Structure Of Cell Division Protein Ftsz Fro		2e-33
3vo9_A	308	Staphylococcus Aureus Ftsz Apo-Form (Semet) Length		1e-30
2vaw_A	394	Ftsz Pseudomonas Aeruginosa Gdp Length = 394		8e-29
1ofu_A	320	Crystal Structure Of Sula:ftsz From Pseudomonas Aer		2e-28
1w5f_A	353	Ftsz, T7 Mutated, Domain Swapped (T. Maritima) Leng		1e-27
2r6r_1	338	Aquifex Aeolicus Ftsz Length = 338		3e-26
1w5e_A	364	Ftsz W319y Mutant, P1 (m. Jannaschii) Length = 364		4e-21
1fsz_A	372	Crystal Structure Of The Cell-Division Protein Ftsz		5e-21
1w58_1	364	Ftsz Gmpcpp Soak I213 (M. Jannaschii) Length = 364		5e-21

>pdb|2VAM|A Chain A, Ftsz B. Subtilis Length = 382

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191
           RMIE+ + GVE+  VNTDAQA+ +S    E ++QIG +LTRGLGAG NP VG  AA ESK
Sbjct: 29  RMIENEVQGVEYIAVNTDAQALNLSKA--EVKMQIGAKLTRGLGAGANPEVGKKAAEESK 86
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
             IEEA+ GADM+F                     K +G LTVG+ T PF FEGR+R +Q
Sbjct: 87  EQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQ 146
Query: 252 AQEGVANLRNNVDTLIVIPNDKLLTAV 278
           A  G++ ++  VDTLIVIPND++L  V
Sbjct: 147 AAGGISAMKEAVDTLIVIPNDRILEIV 173

>pdb|4E6E|A Chain A, Crystal Structure Of A Putative Cell Division Protein Ftsz (Tfu_1113) From Thermobifida Fusca Yx-Er1 At 2.22 A Resolution Length = 314

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
           NAVNR IE  + GVEF  +NTDAQA+  S    + +L +G ELTRGLGAG NP VG  AA
Sbjct: 23  NAVNRXIEEGLKGVEFIAINTDAQALLXSD--ADVKLDVGRELTRGLGAGANPDVGRKAA 80
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
            + +  IEE + GAD +F                     +S+G LT+G+ T PF FEG+R
Sbjct: 81  EDHREEIEEVLKGADXVFVTAGEGGGTGTGGAPVVANIARSLGALTIGVVTRPFSFEGKR 140
Query: 248 RAIQAQEGVANLRNNVDTLIVIPNDKLLT 276
           RA QA+ G+A LR  VDTLIVIPND+LL+
Sbjct: 141 RATQAEAGIAXLREEVDTLIVIPNDRLLS 169

>pdb|2RHH|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Bound Sulfate Ion Length = 325

Iteration: 1
 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191
           RMIE+ + GVE+  VNTDAQA+ +S    E ++QIG +LTRGLGAG NP VG  AA ESK
Sbjct: 19  RMIENEVQGVEYIAVNTDAQALNLSK--AEVKMQIGAKLTRGLGAGANPEVGKKAAEESK 76
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
             IEEA+ GADM+F                     K +G LTVG+ T PF FEGR+R +Q
Sbjct: 77  EQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQ 136
Query: 252 AQEGVANLRNNVDTLIVIPNDKLLTAV 278
           A  G++ ++  VDTLIVIPND++L  V
Sbjct: 137 AAGGISAMKEAVDTLIVIPNDRILEIV 163

>pdb|3VO8|A Chain A, Staphylococcus Aureus Ftsz Gdp-Form Length = 392

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191
           RMI+  M  VEF  +NTD QA+ +S    E+++QIG +LTRGLGAG NP +G  AA ES+
Sbjct: 31  RMIDHGMNNVEFIAINTDGQALNLSKA--ESKIQIGEKLTRGLGAGANPEIGKKAAEESR 88
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
             IE+AI GADM+F                     K MG LTVG+ T PF FEGR+R  Q
Sbjct: 89  EQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQ 148
Query: 252 AQEGVANLRNNVDTLIVIPNDKLLTAV 278
           A  GV  ++  VDTLIVIPND+LL  V
Sbjct: 149 AAAGVEAMKAAVDTLIVIPNDRLLDIV 175

>pdb|4DXD|A Chain A, Staphylococcal Aureus Ftsz In Complex With 723 Length = 396

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191
           RMI+  M  VEF  +NTD QA+ +S    E+++QIG +LTRGLGAG NP +G  AA ES+
Sbjct: 35  RMIDHGMNNVEFIAINTDGQALNLSKA--ESKIQIGEKLTRGLGAGANPEIGKKAAEESR 92
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
             IE+AI GADM+F                     K MG LTVG+ T PF FEGR+R  Q
Sbjct: 93  EQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQ 152
Query: 252 AQEGVANLRNNVDTLIVIPNDKLLTAV 278
           A  GV  ++  VDTLIVIPND+LL  V
Sbjct: 153 AAAGVEAMKAAVDTLIVIPNDRLLDIV 179

>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form Length = 308

Iteration: 1
 Score =  140 bits (354), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191
           RMI+  M  VEF  +NTD QA+ +S    E+++QIG +LTRGLGAG NP +G  AA ES+
Sbjct: 21  RMIDHGMNNVEFIAINTDGQALNLSK--AESKIQIGEKLTRGLGAGANPEIGKKAAEESR 78
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
             IE+AI GADM+F                     K MG LTVG+ T PF FEGR+R  Q
Sbjct: 79  EQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQ 138
Query: 252 AQEGVANLRNNVDTLIVIPNDKLLTAV 278
           A  GV  ++  VDTLIVIPND+LL  V
Sbjct: 139 AAAGVEAMKAAVDTLIVIPNDRLLDIV 165

>pdb|1RLU|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Gtp-Gamma-S Length = 382

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
           NAVNRMIE  + GVEF  +NTDAQA+ +S    + +L +G + TRGLGAG +P VG  AA
Sbjct: 25  NAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGLGAGADPEVGRKAA 82
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
            ++K  IEE + GADM+F                     + +G LTVG+ T PF FEG+R
Sbjct: 83  EDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKR 142
Query: 248 RAIQAQEGVANLRNNVDTLIVIPNDKLL 275
           R+ QA+ G+A LR + DTLIVIPND+LL
Sbjct: 143 RSNQAENGIAALRESCDTLIVIPNDRLL 170

>pdb|2Q1X|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From Mycobacterium Tuberculosis In Complex With Citrate. Length = 379

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
           NAVNRMIE  + GVEF  +NTDAQA+ +S    + +L +G + TRGLGAG +P VG  AA
Sbjct: 22  NAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGLGAGADPEVGRKAA 79
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
            ++K  IEE + GADM+F                     + +G LTVG+ T PF FEG+R
Sbjct: 80  EDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKR 139
Query: 248 RAIQAQEGVANLRNNVDTLIVIPNDKLL 275
           R+ QA+ G+A LR + DTLIVIPND+LL
Sbjct: 140 RSNQAENGIAALRESCDTLIVIPNDRLL 167

>pdb|3VO9|A Chain A, Staphylococcus Aureus Ftsz Apo-Form (Semet) Length = 308

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191
           R I+     VEF  +NTD QA+ +S    E+++QIG +LTRGLGAG NP +G  AA ES+
Sbjct: 21  RXIDHGXNNVEFIAINTDGQALNLSK--AESKIQIGEKLTRGLGAGANPEIGKKAAEESR 78
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
             IE+AI GAD +F                     K  G LTVG+ T PF FEGR+R  Q
Sbjct: 79  EQIEDAIQGADXVFVTSGXGGGTGTGAAPVVAKIAKEXGALTVGVVTRPFSFEGRKRQTQ 138
Query: 252 AQEGVANLRNNVDTLIVIPNDKLLTAV 278
           A  GV   +  VDTLIVIPND+LL  V
Sbjct: 139 AAAGVEAXKAAVDTLIVIPNDRLLDIV 165

>pdb|2VAW|A Chain A, Ftsz Pseudomonas Aeruginosa Gdp Length = 394

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
           NAVN M ++++ GVEF   NTDAQA+K   +     LQ+G  +T+GLGAG NP VG  AA
Sbjct: 25  NAVNHMAKNNVEGVEFICANTDAQALK--NIAARTVLQLGPGVTKGLGAGANPEVGRQAA 82
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
            E +  I E + GADM+F                     K MGILTV + T PF FEGR+
Sbjct: 83  LEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRK 142
Query: 248 RAIQAQEGVANLRNNVDTLIVIPNDKLLT 276
           R   A EG+  L  +VD+LI IPN+KLLT
Sbjct: 143 RMQIADEGIRALAESVDSLITIPNEKLLT 171

>pdb|1OFU|A Chain A, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa Length = 320

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187
           NAVN M ++++ GVEF   NTDAQA+K   +     LQ+G  +T+GLGAG NP VG  AA
Sbjct: 25  NAVNHMAKNNVEGVEFICANTDAQALK--NIAARTVLQLGPGVTKGLGAGANPEVGRQAA 82
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
            E +  I E + GADM+F                     K MGILTV + T PF FEGR+
Sbjct: 83  LEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRK 142
Query: 248 RAIQAQEGVANLRNNVDTLIVIPNDKLLT 276
           R   A EG+  L  +VD+LI IPN+KLLT
Sbjct: 143 RMQIADEGIRALAESVDSLITIPNEKLLT 171

>pdb|1W5F|A Chain A, Ftsz, T7 Mutated, Domain Swapped (T. Maritima) Length = 353

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 85/149 (57%), Gaps = 2/149 (1%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
           +NA+NRMIE  + GVEF  VNTD Q ++ S    + ++QIG  +TRGLGAGG P +G  A
Sbjct: 34  NNAINRMIEIGIHGVEFVAVNTDLQVLEASNA--DVKIQIGENITRGLGAGGRPEIGEQA 91
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
           A ES+  I E +    M+F                     K MGILTV I T PF FEG 
Sbjct: 92  ALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGP 151
Query: 247 RRAIQAQEGVANLRNNVDTLIVIPNDKLL 275
            R  +A EG+  LR +VDTLI I N+KL+
Sbjct: 152 ERLKKAIEGLKKLRKHVDTLIKISNNKLM 180

>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz Length = 338

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
           SNAVNRM E  + GVE + +NTD Q +    V   N++QIG ++TRGLGAG  P VG  A
Sbjct: 20  SNAVNRMYEDGIEGVELYAINTDVQHLSTLKV--PNKIQIGEKVTRGLGAGAKPEVGEEA 77
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
           A E    I+E +   DM+F                     K MGILTV +AT+PF FEG 
Sbjct: 78  ALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEMGILTVAVATLPFRFEGP 137
Query: 247 RRAIQAQEGVANLRNNVDTLIVIPNDKL 274
           R+  +A +G+  L+ + D  IVI NDK+
Sbjct: 138 RKMEKALKGLEKLKESSDAYIVIHNDKI 165

>pdb|1W5E|A Chain A, Ftsz W319y Mutant, P1 (m. Jannaschii) Length = 364

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
           +N + R+    + G +   +NTDAQ +  +    + ++ IG +LTRGLGAGGNP +G  A
Sbjct: 50  NNTITRLKMEGIEGAKTVAINTDAQQLIRTK--ADKKILIGKKLTRGLGAGGNPKIGEEA 107
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
           A ES   I+ AI  +DM+F                     K +G LTV + T+PF  EG+
Sbjct: 108 AKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGK 167
Query: 247 RRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            R   A EG+  L+ + DTL+VIPN+KL   V
Sbjct: 168 VRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199

>pdb|1FSZ|A Chain A, Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a Resolution Length = 372

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
           +N + R+    + G +   +NTDAQ +  +    + ++ IG +LTRGLGAGGNP +G  A
Sbjct: 50  NNTITRLKMEGIEGAKTVAINTDAQQLIRTK--ADKKILIGKKLTRGLGAGGNPKIGEEA 107
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
           A ES   I+ AI  +DM+F                     K +G LTV + T+PF  EG+
Sbjct: 108 AKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGK 167
Query: 247 RRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            R   A EG+  L+ + DTL+VIPN+KL   V
Sbjct: 168 VRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199

>pdb|1W58|1 Chain 1, Ftsz Gmpcpp Soak I213 (M. Jannaschii) Length = 364

Iteration: 1
 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186
           +N + R+    + G +   +NTDAQ +  +    + ++ IG +LTRGLGAGGNP +G  A
Sbjct: 50  NNTITRLKMEGIEGAKTVAINTDAQQLIRTK--ADKKILIGKKLTRGLGAGGNPKIGEEA 107
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
           A ES   I+ AI  +DM+F                     K +G LTV + T+PF  EG+
Sbjct: 108 AKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGK 167
Query: 247 RRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            R   A EG+  L+ + DTL+VIPN+KL   V
Sbjct: 168 VRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
1rq2_A	382	Cell division protein FTSZ; cell cycle, tubulin, G	1e-103
2vxy_A	382	FTSZ, cell division protein FTSZ; GTP-binding, nuc	1e-103
4dxd_A	396	Cell division protein FTSZ; rossmann fold, GTPase,	1e-103
1w5f_A	353	Cell division protein FTSZ; complete proteome, GTP	1e-102
2vap_A	364	FTSZ, cell division protein FTSZ homolog 1; polyme	1e-101
2r75_1	338	Cell division protein FTSZ; GTPase, tubulin-like,	1e-101
1ofu_A	320	FTSZ, cell division protein FTSZ; bacterial cell d	5e-99
2vaw_A	394	FTSZ, cell division protein FTSZ; bacterial cell d	1e-98
4ei7_A	389	Plasmid replication protein REPX; GTP hydrolase, p	3e-61
3v3t_A	360	Cell division GTPase FTSZ, diverged; TUBZ, tubulin	7e-44
3m89_A	427	FTSZ/tubulin-related protein; partition, TUBZ, GTP	9e-16
3r4v_A	315	Putative uncharacterized protein; tubulin, unknown	2e-10

>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Length = 382

 Score =  306 bits (785), Expect = e-103
 Identities = 100/171 (58%), Positives = 126/171 (73%), Gaps = 2/171 (1%)

Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
           P +N  A IKV+G+GGGG NAVNRMIE  + GVEF  +NTDAQA+ +S    + +L +G 
Sbjct: 6   PPHNYLAVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGR 63

Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
           + TRGLGAG +P VG  AA ++K  IEE + GADM+FVTAG GGGTGTG APV+A IA+ 
Sbjct: 64  DSTRGLGAGADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARK 123

Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           +G LTVG+ T PF FEG+RR+ QA+ G+A LR + DTLIVIPND+LL    
Sbjct: 124 LGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGD 174

>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Length = 382

 Score =  304 bits (782), Expect = e-103
 Identities = 110/170 (64%), Positives = 132/170 (77%), Gaps = 2/170 (1%)

Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
           N +  A IKVIGVGGGG+NAVNRMIE+ + GVE+  VNTDAQA+ +S    E ++QIG +
Sbjct: 7   NIDGLASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKA--EVKMQIGAK 64

Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
           LTRGLGAG NP VG  AA ESK  IEEA+ GADM+FVTAGMGGGTGTGAAPVIA IAK +
Sbjct: 65  LTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDL 124

Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           G LTVG+ T PF FEGR+R +QA  G++ ++  VDTLIVIPND++L  V 
Sbjct: 125 GALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVD 174

>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} Length = 396

 Score =  304 bits (780), Expect = e-103
 Identities = 106/171 (61%), Positives = 128/171 (74%), Gaps = 2/171 (1%)

Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
              N+ A +KVIGVGGGG+NAVNRMI+  M  VEF  +NTD QA+ +S    E+++QIG 
Sbjct: 12  QGFNHLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSKA--ESKIQIGE 69

Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
           +LTRGLGAG NP +G  AA ES+  IE+AI GADM+FVT+GMGGGTGTGAAPV+A IAK 
Sbjct: 70  KLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKE 129

Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           MG LTVG+ T PF FEGR+R  QA  GV  ++  VDTLIVIPND+LL  V 
Sbjct: 130 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVD 180

>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Length = 353

 Score =  300 bits (771), Expect = e-102
 Identities = 96/180 (53%), Positives = 120/180 (66%), Gaps = 2/180 (1%)

Query: 100 SESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVI 159
            E  +++      N  KIKVIGVGG G+NA+NRMIE  + GVEF  VNTD Q ++ S   
Sbjct: 7   VEKKKENRNIPQANNLKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNA- 65

Query: 160 PENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAA 219
            + ++QIG  +TRGLGAGG P +G  AA ES+  I E +    M+F+TAG GGGTGTGA+
Sbjct: 66  -DVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGAS 124

Query: 220 PVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           PVIA IAK MGILTV I T PF FEG  R  +A EG+  LR +VDTLI I N+KL+  + 
Sbjct: 125 PVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELP 184

>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Length = 364

 Score =  298 bits (766), Expect = e-101
 Identities = 81/187 (43%), Positives = 117/187 (62%), Gaps = 2/187 (1%)

Query: 92  KEGLGESVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151
           +E     +S   ++        +AKI V+G GG G+N + R+    + G +   +NTDAQ
Sbjct: 15  EEFNELELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQ 74

Query: 152 AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMG 211
            +  +    + ++ IG +LTRGLGAGGNP +G  AA ES   I+ AI  +DM+F+T G+G
Sbjct: 75  QLIRTKA--DKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLG 132

Query: 212 GGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271
           GGTGTG+APV+A I+K +G LTV + T+PF  EG+ R   A EG+  L+ + DTL+VIPN
Sbjct: 133 GGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPN 192

Query: 272 DKLLTAV 278
           +KL   V
Sbjct: 193 EKLFEIV 199

>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Length = 338

 Score =  297 bits (763), Expect = e-101
 Identities = 91/172 (52%), Positives = 116/172 (67%), Gaps = 2/172 (1%)

Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
           +    N  KIKVIGVGGGGSNAVNRM E  + GVE + +NTD Q +    V   N++QIG
Sbjct: 1   MEEFVNPCKIKVIGVGGGGSNAVNRMYEDGIEGVELYAINTDVQHLSTLKV--PNKIQIG 58

Query: 168 CELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
            ++TRGLGAG  P VG  AA E    I+E +   DM+F++AG+GGGTGTGAAPVIA  AK
Sbjct: 59  EKVTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAK 118

Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
            MGILTV +AT+PF FEG R+  +A +G+  L+ + D  IVI NDK+    +
Sbjct: 119 EMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSN 170

>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Length = 320

 Score =  291 bits (748), Expect = 5e-99
 Identities = 98/171 (57%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
           V N    A IKVIGVGGGG NAVN M ++++ GVEF   NTDAQA+K         LQ+G
Sbjct: 5   VDNIAQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLG 62

Query: 168 CELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
             +T+GLGAG NP VG  AA E +  I E + GADM+F+T GMGGGTGTGAAP+IA +AK
Sbjct: 63  PGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK 122

Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            MGILTV + T PF FEGR+R   A EG+  L  +VD+LI IPN+KLLT +
Sbjct: 123 EMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 173

>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Length = 394

 Score =  293 bits (753), Expect = 1e-98
 Identities = 98/171 (57%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
           V N    A IKVIGVGGGG NAVN M ++++ GVEF   NTDAQA+K         LQ+G
Sbjct: 5   VDNIAQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLG 62

Query: 168 CELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
             +T+GLGAG NP VG  AA E +  I E + GADM+F+T GMGGGTGTGAAP+IA +AK
Sbjct: 63  PGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK 122

Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            MGILTV + T PF FEGR+R   A EG+  L  +VD+LI IPN+KLLT +
Sbjct: 123 EMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 173

>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Length = 389

 Score =  197 bits (502), Expect = 3e-61
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 110 NNNNEAKIKVIGVGGGGSN------AVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENR 163
             N   K   +G+G GG             I+++       +VNT++Q      +  +N 
Sbjct: 11  QGNISLKFGFLGLGMGGCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEI--KNT 68

Query: 164 LQIGCELTRGL--GAGGNPSVGMNAANESKVAIEEAIS----GADMIFVTAGMGGGTGTG 217
             +      G   GA  NP VG  A  + +  I EA+       D I++T G+GGGTGTG
Sbjct: 69  GNVRKIQLEGYEQGAARNPQVGEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTG 128

Query: 218 AAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNN---VDTLIVIPNDKL 274
           A      +          + T+P   E  +    A   + ++  N     ++++I N KL
Sbjct: 129 ALLKAIEMLYEHDYNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKL 188

Query: 275 LTAVS 279
                
Sbjct: 189 YRKFE 193

>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360

 Score =  151 bits (383), Expect = 7e-44
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 9/172 (5%)

Query: 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
            + KI    +G GG N V+ ++           +NT  + +        +   I      
Sbjct: 3   MKNKIVFAPIGQGGGNIVDTLLGIC-GDYNALFINTSKKDLDSLKHAK-HTYHIPYAEGC 60

Query: 173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM--G 230
           G               +    I E  S  D++   A M GG G+G  P I G+AK M   
Sbjct: 61  GKERKKAVGYAQTYYKQIIAQIMEKFSSCDIVIFVATMAGGAGSGITPPILGLAKQMYPN 120

Query: 231 ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVD-----TLIVIPNDKLLTA 277
                +  +P   E     + A     ++  + +     ++ ++ N+K    
Sbjct: 121 KHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNKREKE 172

>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Length = 427

 Score = 75.7 bits (185), Expect = 9e-16
 Identities = 31/212 (14%), Positives = 59/212 (27%), Gaps = 42/212 (19%)

Query: 101 ESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIE----SSMTGVEFWIVNTDAQ-AMKV 155
           E +  ++   N+   +  VIG G  G+   +        +  T      VN      M +
Sbjct: 29  EHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHL 88

Query: 156 SPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAI----------------- 198
             +I E+R+          GA   PSV  +  +                           
Sbjct: 89  QNIIKEDRIHFD----GLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEG 144

Query: 199 -SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG--ILTVGIATVPFCFEGRRRAIQA--- 252
               D   +  G GGG GTG   ++  + +          + ++P               
Sbjct: 145 EVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLS 204

Query: 253 ----------QEGVANLRNNVDTLIVIPNDKL 274
                     +    +    +  +IV  N ++
Sbjct: 205 EIDEFMREQDRLFGNSDIKPLANVIVNDNTQM 236

>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Length = 315

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 9/159 (5%)

Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLG 175
           K+ +I  GG G N   ++++  +          D   + V   +     +         G
Sbjct: 4   KVCLIFAGGTGMNVATKLVD--LGEAVHCFDTCDKNVVDVHRSVNVTLTK------GTRG 55

Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
           AGGN  V +        A+ + I  AD   V   +GGG+G+   P+I G         V 
Sbjct: 56  AGGNRKVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVS 115

Query: 236 IATVPF-CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDK 273
                    +     I   + +  +  N    IV+    
Sbjct: 116 FVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVP 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
4dxd_A	396	Cell division protein FTSZ; rossmann fold, GTPase,	100.0
2vxy_A	382	FTSZ, cell division protein FTSZ; GTP-binding, nuc	100.0
1ofu_A	320	FTSZ, cell division protein FTSZ; bacterial cell d	100.0
1w5f_A	353	Cell division protein FTSZ; complete proteome, GTP	100.0
2r75_1	338	Cell division protein FTSZ; GTPase, tubulin-like,	100.0
2vaw_A	394	FTSZ, cell division protein FTSZ; bacterial cell d	100.0
1rq2_A	382	Cell division protein FTSZ; cell cycle, tubulin, G	100.0
2vap_A	364	FTSZ, cell division protein FTSZ homolog 1; polyme	100.0
4ei7_A	389	Plasmid replication protein REPX; GTP hydrolase, p	100.0
3v3t_A	360	Cell division GTPase FTSZ, diverged; TUBZ, tubulin	100.0
3m89_A	427	FTSZ/tubulin-related protein; partition, TUBZ, GTP	100.0
3r4v_A	315	Putative uncharacterized protein; tubulin, unknown	99.98
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	99.95
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	99.94
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	99.9
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	99.87
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	99.85
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.74
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.33
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.3
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.29
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.07
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.95
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.77
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.58
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.41
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.41
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.37
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	94.37
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	93.78
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.49
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	93.47
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.2
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	93.13
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.13
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.09
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	92.91
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.89
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.85
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.79
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.73
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.37
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.35
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	92.26
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.2
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.16
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.94
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	91.81
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	91.76
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	91.69
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	91.65
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	91.42
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.35
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	91.3
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	91.23
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	91.21
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.16
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	91.11
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.1
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	91.1
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	90.95
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	90.82
1xq6_A	253	Unknown protein; structural genomics, protein stru	90.74
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.74
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	90.62
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.59
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	90.47
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	90.39
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	90.34
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	90.28
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.13
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	89.89
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	89.81
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	89.29
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	88.85
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	88.7
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	88.67
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	88.45
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	88.34
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	88.16
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	87.95
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	87.6
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	87.51
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	87.3
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	87.12
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	86.88
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	86.64
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	86.62
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	86.44
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	86.38
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	86.37
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	86.36
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	86.27
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.22
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	86.01
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	85.66
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	85.37
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	85.34
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	85.32
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	85.21
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	85.09
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	84.99
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	84.97
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	84.82
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	84.81
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	84.74
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	84.64
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	84.6
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	84.38
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	84.35
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	83.8
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	83.43
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	83.4
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	83.27
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	83.25
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	82.91
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	82.74
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.69
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	82.55
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	82.42
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	82.32
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	82.25
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	82.12
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	81.86
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	81.66
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	81.39
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	81.21
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	81.17
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	81.14
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	81.11
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	81.04
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	80.82
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	80.67
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	80.57
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	80.55
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	80.54
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	80.43
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	80.15
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	80.06

>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*

Probab=100.00  E-value=1.7e-47  Score=367.62  Aligned_cols=167  Identities=63%  Similarity=0.992  Sum_probs=159.4

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      ....++|+||||||||+|+||+|++.++.+++|||+|||.|+|..++  +++||+||++.|+|+|||+||++|++++++.
T Consensus        14 ~~~~~~IkVIGVGG~G~NaVn~m~~~~~~gvefiaiNTD~qaL~~s~--a~~ki~lG~~~t~GlGAG~np~vG~eaaee~   91 (396)
T 4dxd_A           14 FNHLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSK--AESKIQIGEKLTRGLGAGANPEIGKKAAEES   91 (396)
T ss_dssp             ----CCEEEEEEHHHHHHHHHHHHHHCCCSEEEEEEESCHHHHHTCC--CSEEEECCHHHHTTSCCTTCHHHHHHHHHHT
T ss_pred             cCCCCeEEEEEECCcHHHHHHHHHHhCCCCceEEEEECCHHHHhcCC--CccEEEcCccccCCCCCCCChHHHHHHHHHH
Confidence            35578999999999999999999999999999999999999999875  5899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEe
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIP  270 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~D  270 (279)
                      +++|++++++||+|||+||||||||||++|+|+++++++++++|+|||.||.|||.+|+|||.+++++|++++|++|+||
T Consensus        92 ~d~Ir~~le~~D~ffItagmGGGTGSGaapvIaeiake~g~LtvsVVt~Pf~~Eg~~r~yNA~lgl~~L~e~vD~vIvId  171 (396)
T 4dxd_A           92 REQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIP  171 (396)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred             HHHHHHHHcCCCEEEEEeccCCCccccHHHHHHHHHHhcCCceEEEEeCCccccchHHHHHHHHHHHHHHhhCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhhC
Q 044090          271 NDKLLTAVS  279 (279)
Q Consensus       271 Nd~L~~i~~  279 (279)
                      ||+|+++|.
T Consensus       172 NeaL~~I~~  180 (396)
T 4dxd_A          172 NDRLLDIVD  180 (396)
T ss_dssp             GGGGGGTCC
T ss_pred             CHHHHHhhc
Confidence            999999973

>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*

Probab=100.00  E-value=1.5e-46  Score=360.80  Aligned_cols=166  Identities=66%  Similarity=1.020  Sum_probs=160.0

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ...++|+||||||||+|++|+|+++++.+++||++|||.|+|..+.+  ++||++|+..|+|+|||+||++|++++++.+
T Consensus         9 ~~~~~I~vIGvGg~G~navn~m~~~gi~gv~fia~NTD~q~L~~~~a--~~ki~iG~~~t~G~GAGnn~a~G~e~aee~~   86 (382)
T 2vxy_A            9 DGLASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKA--EVKMQIGAKLTRGLGAGANPEVGKKAAEESK   86 (382)
T ss_dssp             --CCCEEEEEEHHHHHHHHHHHHHTTCCSCEEEEEESBHHHHHTCCC--SEEEECCHHHHTTBCCTTCHHHHHHHHHHTH
T ss_pred             cCCCEEEEEeeCchHHHHHHHHHHhCCCCCCEEEEeCCHHHHhcCCC--CcEEEecccccCCCCCCCChHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999998764  7999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN  271 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN  271 (279)
                      ++|++++++||+|||+||||||||||++|+|++++++|++++|+|||.||.|||.+|+|||.++|++|++++|++|+|||
T Consensus        87 d~Ir~~le~~D~ffI~asmGGGTGSG~apvla~~ake~g~ltvsVvt~Pf~~Eg~~r~~nA~l~l~~L~e~~D~~ividN  166 (382)
T 2vxy_A           87 EQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPN  166 (382)
T ss_dssp             HHHHHHHTTCSEEEEEEESSSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHHCSEEEEEEH
T ss_pred             HHHHHHHhhCCEEEEEeccCCCCCCcHHHHHHHHHHHhCCCeEEEEeCCcccccchhHHHHHHHHHHHHHhCCEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhC
Q 044090          272 DKLLTAVS  279 (279)
Q Consensus       272 d~L~~i~~  279 (279)
                      |+|+++|.
T Consensus       167 eaL~~i~~  174 (382)
T 2vxy_A          167 DRILEIVD  174 (382)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHHH
Confidence            99999873

>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1

Probab=100.00  E-value=2.2e-46  Score=351.95  Aligned_cols=165  Identities=58%  Similarity=0.900  Sum_probs=159.3

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      .++++|+|||+||||+|++++|++++.++++||++|||.++|..+.  +++||++|+..|+|+|||+||++|++++++.+
T Consensus         9 ~~~~~I~viGvGg~G~n~v~~m~~~gi~gv~~i~~ntD~q~L~~~~--a~~~i~iG~~~t~g~GAG~n~~~G~~~~ee~~   86 (320)
T 1ofu_A            9 AQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIA--ARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   86 (320)
T ss_dssp             --CCCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCS--CSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             cCCCEEEEECcCchHHHHHHHHHHhCCCCCCEEEEcCCHHHHhcCC--CCcEEEccCCccCCCCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999876  47999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN  271 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN  271 (279)
                      ++|++++++||+|||+||||||||||++|+|+++++++++++++|+|+||.+||.+|+|||.++|++|++++|++|+|||
T Consensus        87 d~I~~~le~~d~~~i~as~GGGTGSG~~~~la~~a~e~g~lt~~vv~~P~~~Eg~~~~~nA~~~l~~L~e~~D~~ividN  166 (320)
T 1ofu_A           87 ERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPN  166 (320)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHTTCSEEEEEEH
T ss_pred             HHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHhcCCcEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhh
Q 044090          272 DKLLTAV  278 (279)
Q Consensus       272 d~L~~i~  278 (279)
                      |+|+++|
T Consensus       167 e~L~~i~  173 (320)
T 1ofu_A          167 EKLLTIL  173 (320)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhhh
Confidence            9999987

>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1

Probab=100.00  E-value=6.2e-46  Score=353.29  Aligned_cols=164  Identities=58%  Similarity=0.901  Sum_probs=158.7

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      +.++|+|||+||||+|++|+|++++..+++||++|||.|+|..+.  +++||++|+..|+|+|||+||++|++++++.++
T Consensus        20 ~~~~I~vIGvGg~G~n~vn~m~~~gi~gv~~ia~nTD~q~L~~~~--a~~~i~iG~~~t~G~GAG~n~~~G~~~aee~~d   97 (353)
T 1w5f_A           20 NNLKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASN--ADVKIQIGENITRGLGAGGRPEIGEQAALESEE   97 (353)
T ss_dssp             --CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCC--CSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHH
T ss_pred             CCCEEEEECcCchHHHHHHHHHHhCCCCCCEEEEcCCHHHHhcCC--CCcEEEccCcccCCCCCCCChHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999999875  479999999999999999999999999999999


Q ss_pred             HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEech
Q 044090          193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPND  272 (279)
Q Consensus       193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd  272 (279)
                      +|++++++||+|||+||||||||||++|+|+++++++++++++|+|+||.+|+.+|+|||.+++++|++++|++|+||||
T Consensus        98 ~I~~~le~~d~~~i~as~GGGTGSG~ap~la~~~ke~g~lt~~Vvt~Pf~~Eg~~~~~nA~~~l~~L~e~~D~~ividNe  177 (353)
T 1w5f_A           98 KIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNN  177 (353)
T ss_dssp             HHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHTCSEEEEEEHH
T ss_pred             HHHHHHccCCEEEEEeccCCCccccHHHHHHHHHHHhCCcEEEEEeCCcccccchhHHHHHHHHHHHHhhCCEEEEEecH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 044090          273 KLLTAV  278 (279)
Q Consensus       273 ~L~~i~  278 (279)
                      +|+++|
T Consensus       178 aL~~i~  183 (353)
T 1w5f_A          178 KLMEEL  183 (353)
T ss_dssp             HHHTTS
T ss_pred             HHHhhh
Confidence            999987

>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*

Probab=100.00  E-value=7.9e-46  Score=350.54  Aligned_cols=166  Identities=54%  Similarity=0.842  Sum_probs=159.0

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ..+++|+|||+||||+|+||+|++.+.++++||++|||.|+|..+.  +++||++|++.|+|+|||+||++|++++++.+
T Consensus         5 ~~~~~I~viGvGg~G~n~vn~m~~~~~~gv~~ia~NTD~q~L~~~~--a~~ki~iG~~~t~g~GAGnn~a~G~~~~ee~~   82 (338)
T 2r75_1            5 VNPCKIKVIGVGGGGSNAVNRMYEDGIEGVELYAINTDVQHLSTLK--VPNKIQIGEKVTRGLGAGAKPEVGEEAALEDI   82 (338)
T ss_dssp             ---CCEEEEEEHHHHHHHHHHHHHTTCCSCEEEEEESBHHHHHTCC--CSEEEECCHHHHTTBCCTTCHHHHHHHHHHTH
T ss_pred             cCCCeEEEEeeCccHHHHHHHHHHhCCCCceEEEEECCHHHHhcCC--CCcEEEecCcccCCCCCCCChHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999875  48999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN  271 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN  271 (279)
                      ++|++++++||++||+||||||||||++|+|+++++++++++|+|+|.||.+|+.+|+|||.++|++|++++|++|+|||
T Consensus        83 d~Ir~~~e~~D~l~i~~s~GGGTGSG~~~~ia~l~~e~g~lt~~Vv~~P~~~eg~~~~ynA~~~l~~L~e~~D~~ividN  162 (338)
T 2r75_1           83 DKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHN  162 (338)
T ss_dssp             HHHHHHHSSCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHTCSEEEEEEH
T ss_pred             HHHHHHHccCCeeEEecccCCCcCCCchHHHHHHHHhcCCCEEEEeCCCccccchhhHHHHHHHHHHHHhcCCeEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhC
Q 044090          272 DKLLTAVS  279 (279)
Q Consensus       272 d~L~~i~~  279 (279)
                      |+|+++|.
T Consensus       163 e~L~~i~~  170 (338)
T 2r75_1          163 DKIKELSN  170 (338)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHhhhh
Confidence            99999873

>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1

Probab=100.00  E-value=4.1e-45  Score=352.01  Aligned_cols=165  Identities=58%  Similarity=0.900  Sum_probs=160.1

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ...++|+||||||||+|++++|+++++.+++||++|||.++|..+.  +++||++|+..|+|+|||+||++|++++++.+
T Consensus         9 ~~~~~I~vIGvGg~G~n~vn~m~~~gi~gv~fia~NTD~q~L~~~~--a~~ki~iG~~~t~G~GAG~n~~~G~~~aee~~   86 (394)
T 2vaw_A            9 AQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIA--ARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   86 (394)
T ss_dssp             TTTCCEEEEEEHHHHHHHHHHHHTTTCCSEEEEEEESCTTTTSSCS--SSCEEECCHHHHSSSCCCSCHHHHHHHHHHTH
T ss_pred             cCCCEEEEECcCchHHHHHHHHHHcCCCCCCEEEecCCHHHHhcCC--CCcEEEccccccCCCCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999998875  48999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN  271 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN  271 (279)
                      ++|++++++||+|||+||||||||||++|+|+++++++++++|+|+|+||.+||.+|+|||.++|++|++++|++|+|||
T Consensus        87 d~I~~~le~~d~~fI~asmGGGTGSG~ap~lae~~ke~g~ltvsVv~~Pf~~Eg~~r~ynA~~~l~~L~e~~D~~ividN  166 (394)
T 2vaw_A           87 ERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPN  166 (394)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEEECCGGGHHHHHHHHHHHHHHHHTTCSEEEEEEH
T ss_pred             HHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEEecCCcccccchhhHHHHHHHHHHHHhCCEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhh
Q 044090          272 DKLLTAV  278 (279)
Q Consensus       272 d~L~~i~  278 (279)
                      |+|+++|
T Consensus       167 eaL~~i~  173 (394)
T 2vaw_A          167 EKLLTIL  173 (394)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*

Probab=100.00  E-value=5.4e-45  Score=350.01  Aligned_cols=166  Identities=60%  Similarity=0.949  Sum_probs=154.2

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ...++|+||||||||+|++++|+++++.+++||++|||.++|..+.+  ++||++|+..|+|+|||+||++|++++++.+
T Consensus         9 ~~~~~I~vIGvGg~G~n~vn~m~~~gi~gv~fia~NTD~q~L~~~~a--~~~i~iG~~~t~G~GAG~n~~~G~~~aee~~   86 (382)
T 1rq2_A            9 NYLAVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   86 (382)
T ss_dssp             ---CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHCCC--SEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             cCCCEEEEECcCchHHHHHHHHHHhCCCCCCEEEecCCHHHHhcCCC--CcEEEecccccCCCCCCCChHHHHHHHHHHH
Confidence            44789999999999999999999999999999999999999998764  7999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN  271 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN  271 (279)
                      ++|++++++||+|||+||||||||||++|+|+++++++++++|+|||.||.+||.+|+|||.++|++|++++|++|+|||
T Consensus        87 d~Ir~~le~~d~~fi~as~GGGTGSG~ap~laela~e~g~ltvsVv~~Pf~~Eg~~~~~nA~l~l~~L~e~~D~~ividN  166 (382)
T 1rq2_A           87 DEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPN  166 (382)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHHCSEEEEEEH
T ss_pred             HHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEEEecCcccccchHHHHHHHHHHHHHHhCCEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhC
Q 044090          272 DKLLTAVS  279 (279)
Q Consensus       272 d~L~~i~~  279 (279)
                      |+|+++|.
T Consensus       167 eaL~~i~~  174 (382)
T 1rq2_A          167 DRLLQMGD  174 (382)
T ss_dssp             HHHTTSSC
T ss_pred             hhHHHHhc
Confidence            99999873

>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*

Probab=100.00  E-value=9.6e-45  Score=346.41  Aligned_cols=165  Identities=48%  Similarity=0.828  Sum_probs=160.2

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      .+++|+|||+||||+|++++|+++++.+++||++|||.++|..+.+  ++||++|+..|+|+|||+||++|++++++.++
T Consensus        36 ~~~~I~vIGvGg~G~n~v~~m~~~gi~gv~fia~NTD~q~L~~~~a--~~ki~iG~~~t~G~GAGnn~a~G~~~~ee~~d  113 (364)
T 2vap_A           36 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKA--DKKILIGKKLTRGLGAGGNPKIGEEAAKESAE  113 (364)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCC--SEEEECCTTTTTTBCCTTCHHHHHHHHHHTHH
T ss_pred             CCCeEEEEeeCchHHHHHHHHHHhCCCCCCEEEEcCcHHHHhcCCC--CcEEEeccccccCCCCCCChHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999999999998764  79999999999999999999999999999999


Q ss_pred             HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEech
Q 044090          193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPND  272 (279)
Q Consensus       193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd  272 (279)
                      +|++++++||++||+||||||||||++|+|+++++++++++|+|+|.||.+|+.+|+|||.+++++|++++|++|+||||
T Consensus       114 ~Ir~~le~~D~l~i~as~GGGTGSG~ap~lae~lke~~~lt~~Vv~~Pf~~eg~~~~ynA~~~l~~L~e~~D~~ividNe  193 (364)
T 2vap_A          114 EIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNE  193 (364)
T ss_dssp             HHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHTTCSEEEEEEGG
T ss_pred             HHHHHHhcCCEEEEeccCCCCCCCChHHHHHHHHHHhCCcEEEEeCCCccccchhHHHHHHHHHHHHHHhCCeEEEEcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhC
Q 044090          273 KLLTAVS  279 (279)
Q Consensus       273 ~L~~i~~  279 (279)
                      +|+++|.
T Consensus       194 aL~~i~~  200 (364)
T 2vap_A          194 KLFEIVP  200 (364)
T ss_dssp             GHHHHST
T ss_pred             HHHHHHc
Confidence            9999873

>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*

Probab=100.00  E-value=3.9e-41  Score=323.75  Aligned_cols=164  Identities=25%  Similarity=0.325  Sum_probs=152.2

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCC------cceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCC--CCCCCchhhH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMT------GVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL--GAGGNPSVGM  184 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~------~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~--GaG~np~~G~  184 (279)
                      ..+||+|||+|||||||||+|.+.+..      +++++|+|||.++|..+.+  ++++++|+..++|+  |+|+||++|+
T Consensus        14 ~~~ki~vIGvGgaG~~ivd~~~~~~~~~~~~~~~~~~iaiNTd~~~L~~~~~--~~~~~~g~~~~~g~g~GaG~~p~~G~   91 (389)
T 4ei7_A           14 ISLKFGFLGLGMGGCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEI--KNTGNVRKIQLEGYEQGAARNPQVGE   91 (389)
T ss_dssp             CSSCEEEEEEHHHHHHHHHHHHTCCCCCTTCSCCCEEEEEECCCHHHHHSCC--CSCSSEEEEECTTCCCTTCCCHHHHH
T ss_pred             cCceEEEEEECCchHHHHHHHHhcccccccccccccEEEEECCHHHHhhccC--cchhhhhhhccCCCCCCCCCChHHHH
Confidence            468999999999999999999987643      4789999999999998754  78999999999887  9999999999


Q ss_pred             HHHHHHHHHHHHHh----cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHH
Q 044090          185 NAANESKVAIEEAI----SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLR  260 (279)
Q Consensus       185 eaa~e~~e~I~~~L----e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~  260 (279)
                      ++++++.++|+++|    +++|+|||+||||||||||++|+|++++|++++++++|+|+||.|||.+|..||..+|++|+
T Consensus        92 ~aa~e~~~~i~~~l~~~~~~~d~vfi~ag~GGGTGtGa~pvia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~~A~~~i~~l~  171 (389)
T 4ei7_A           92 EAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTGALLKAIEMLYEHDYNFGLLLTLPRDAEALKVLENATSRIRSIA  171 (389)
T ss_dssp             HHHHHTHHHHHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCccEEEEEecCCCCCccccHHHHHHHHHHcCCCEEEEEEeCCCcCchHHHHHHHHHHHHHH
Confidence            99999999998888    49999999999999999999999999999999999999999999999999999999999996


Q ss_pred             ---HhCCEEEEEechHHHhhh
Q 044090          261 ---NNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       261 ---e~aD~vIv~DNd~L~~i~  278 (279)
                         +.+|++|+||||+|++++
T Consensus       172 ~~~~~vd~~ividN~~l~~~~  192 (389)
T 4ei7_A          172 MNQEAFGSIVLIDNAKLYRKF  192 (389)
T ss_dssp             HTGGGSSEEEEEEHHHHHHHH
T ss_pred             HHhccCCeEEEeccHHHHHHH
Confidence               458999999999999874

>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C}

Probab=100.00  E-value=1.3e-37  Score=296.18  Aligned_cols=155  Identities=21%  Similarity=0.301  Sum_probs=134.3

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH-
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK-  191 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~-  191 (279)
                      .+.||+|||+||||+|+||+|++.+. +++|+++|||.|+|..+.. +++|++||    +|+|||+||++|++++++.+ 
T Consensus         3 ~k~kI~VIGvGGaG~Nav~~m~~~~~-~v~~iaiNTD~q~L~~~~~-~~~ki~ig----~GlGAG~np~vG~eaaee~~~   76 (360)
T 3v3t_A            3 MKNKIVFAPIGQGGGNIVDTLLGICG-DYNALFINTSKKDLDSLKH-AKHTYHIP----YAEGCGKERKKAVGYAQTYYK   76 (360)
T ss_dssp             CGGGEEEEEBSHHHHHHHHHHHHHCT-TSEECEEESCHHHHHTCSS-CSCEEECC----------CCHHHHHHHHGGGHH
T ss_pred             CCCeEEEEEeCCcHHHHHHHHHHcCC-CceEEEEECCHHHHhhCCC-CccEEEcC----CCCCCCCCHHHHHHHHHHhHH
Confidence            36799999999999999999998874 8999999999999998754 37899987    58899999999999999999 


Q ss_pred             HHHHHHh---cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCC--cEEEEEccCCCCchhHHHHHHHHHHHHHHH---hC
Q 044090          192 VAIEEAI---SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGI--LTVGIATVPFCFEGRRRAIQAQEGVANLRN---NV  263 (279)
Q Consensus       192 e~I~~~L---e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi--~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e---~a  263 (279)
                      ++|++++   +++|+|||+||||||||||++|+|++++++.+.  .+..+.++||.+|+.+++|||.+++++|++   ++
T Consensus        77 d~Ir~~le~c~g~dgffI~aslGGGTGSG~~pvLae~lke~~~~k~v~~vtV~Pf~~Egvv~pyNA~l~l~~L~e~sD~v  156 (360)
T 3v3t_A           77 QIIAQIMEKFSSCDIVIFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEG  156 (360)
T ss_dssp             HHHHHHHHHTTTCSEEEEEEETTSHHHHHHHHHHHHHHHHHCTTSEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHhcCCCCCeEEEeeccCCCccccHHHHHHHHHHHhCCCCeEEEEEEeCCCccchhhHHHHHHHHHHHHhhhccC
Confidence            9999999   788999999999999999999999999998664  444455599999999999999999999999   55


Q ss_pred             C--EEEEEechH
Q 044090          264 D--TLIVIPNDK  273 (279)
Q Consensus       264 D--~vIv~DNd~  273 (279)
                      |  ++|+||||+
T Consensus       157 D~lcvividNea  168 (360)
T 3v3t_A          157 KDISIYLLDNNK  168 (360)
T ss_dssp             TSSEEEEEEGGG
T ss_pred             CceEEEEEeCCC
Confidence            5  559999997

>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*

Probab=100.00  E-value=8.2e-35  Score=281.83  Aligned_cols=162  Identities=20%  Similarity=0.268  Sum_probs=130.1

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCC----CcceEEEEeCcHHHHhcCC-CCCCCeEE-cCcccccCCCCCCCchhh
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSM----TGVEFWIVNTDAQAMKVSP-VIPENRLQ-IGCELTRGLGAGGNPSVG  183 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~----~~ve~iavNTD~~~L~~s~-v~a~~ri~-iG~~~t~G~GaG~np~~G  183 (279)
                      -+...+||+|||+||||+|+||+|++.+.    .+++++++|||.++|.... .++++||+ +|+     +|+|+||++|
T Consensus        38 ~~~~~~ki~VIGvGg~G~n~v~~m~~~~~~~g~~~~~~iavNtd~~dl~~L~~~~~~~~i~l~G~-----~GAG~np~~G  112 (427)
T 3m89_A           38 VNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFDGL-----KGAARTPSVV  112 (427)
T ss_dssp             CCCCSSCEEEEEEHHHHHHHHHHHTTCBCTTSCBSCCEEEEESSGGGGTTCSSSCGGGEEEC----------------CH
T ss_pred             ccccCceEEEEEECCcHHHHHHHHHHhCcccCCcCceEEEEECCHHHHHHHhcCCCcceEEecCC-----CCCCCCHHHH
Confidence            34568899999999999999999998765    3699999999998887542 34578884 454     5999999999


Q ss_pred             HHHH------HHH--HHHHHHHhc----------CCCEEEEEeecCCCcccCHHHHHHHHHHH--cCCcEEEEEccCCCC
Q 044090          184 MNAA------NES--KVAIEEAIS----------GADMIFVTAGMGGGTGTGAAPVIAGIAKS--MGILTVGIATVPFCF  243 (279)
Q Consensus       184 ~eaa------~e~--~e~I~~~Le----------~~D~vfIvAGLGGGTGSG~aPvIaeiake--~gi~tvaIvtlPf~~  243 (279)
                      ++++      +++  +++|.++++          ++|+|||+||||||||||++|+|++++++  +++++++++++||.+
T Consensus       113 ~~~ag~~~~~~e~~~~d~I~~~I~~~~e~~~~cd~~d~f~I~aglGGGTGSG~gp~la~~lke~~~~~~~~~vvt~P~~~  192 (427)
T 3m89_A          113 TDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGD  192 (427)
T ss_dssp             HHHHSSSSSTTHHHHHHHHHHHHHHHSBCTTSCBCCSEEEEEEETTSHHHHHHHHHHHHHHHTTCSSSCEEEEEEECCSC
T ss_pred             HHHhhcccCcccchHHHHHHHHHHHHhhccccCCCCCEEEEeeecCCCccccHHHHHHHHHHHhcCCCcEEEEEEECCCC
Confidence            9998      666  676665554          78899999999999999999999999998  469999999999999


Q ss_pred             chhHHHHHHHHHHHHHHH---------------hCCEEEEEechHHHhhh
Q 044090          244 EGRRRAIQAQEGVANLRN---------------NVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       244 Eg~~r~~NA~~gL~~L~e---------------~aD~vIv~DNd~L~~i~  278 (279)
                      |++  +|||.++|++|++               ++|++|+||||+|.+++
T Consensus       193 e~~--~~NA~~~l~~L~~L~~~~~~~~~~~~~~~~D~vividNe~l~~i~  240 (427)
T 3m89_A          193 PDE--INNALVLLSEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRII  240 (427)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHSCTTSCCSEEEEEEEEHHHHHHHH
T ss_pred             ccH--HHHHHHHHHHHHHHhhhhcccccccccccccEEEEEehHHHHHHH
Confidence            974  4999999999755               99999999999998764

>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*

Probab=99.98  E-value=4.1e-33  Score=259.03  Aligned_cols=146  Identities=21%  Similarity=0.269  Sum_probs=127.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      +||+|||+||||+|++++|.+.+   ++.+|+|||.++|...+  +..++.+   .++|+|+|++|++|++++++..++|
T Consensus         3 vki~VvGvGGAG~Nii~rL~~~G---a~~iAiNTD~q~L~~~k--~~~~~~i---~~gglGAGgdpe~g~e~a~e~~~eI   74 (315)
T 3r4v_A            3 VKVCLIFAGGTGMNVATKLVDLG---EAVHCFDTCDKNVVDVH--RSVNVTL---TKGTRGAGGNRKVILPLVRPQIPAL   74 (315)
T ss_dssp             BSCEEEEEHHHHHHHHGGGGGGG---GGEEEEESSSTTCCGGG--GGSEEEE---CTTCCC---CHHHHHHHHGGGHHHH
T ss_pred             ceEEEEEEcCcchHHHHHHHHcC---CCEEEEECchHHhhhhh--hhcceee---ecccCCCCCChHHHHHHHHhhHHHH
Confidence            79999999999999999998854   89999999999996542  2344544   4567999999999999999999999


Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHH---HHHHHHHHHHhCCEEEEEe
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQ---AQEGVANLRNNVDTLIVIP  270 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~N---A~~gL~~L~e~aD~vIv~D  270 (279)
                      ++.++++|+|||++|||||||||++|+|++++++.+.+++++|++|  .|+..+..|   |..+|+.|.+.+|.+|+||
T Consensus        75 ~~~l~~aD~VFVtaGLGGGTGTGaAPVvAeiake~GalvVavVt~~--~E~~~~~~Nai~al~~LE~La~~~dt~Iv~d  151 (315)
T 3r4v_A           75 MDTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGA--MESTDNLGNDIDTMKTLEAIAVNKHLPIVVN  151 (315)
T ss_dssp             HHTSCCBSCEEEEEESSSSSHHHHHHHHHHHHHHTTCCEEEEEEEC--CSSHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHhcCCCCEEEEEeccCCccccchHHHHHHHHHHcCCCEEEEEecC--CCcchhhhchHHHHHHHHHHHhccCCcEEEe
Confidence            9999999999999999999999999999999999999999999999  566666777   6888999999999999998

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}

Probab=99.95  E-value=1.7e-27  Score=231.08  Aligned_cols=158  Identities=18%  Similarity=0.280  Sum_probs=131.3

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--C-----------------------c----ceEEEEeCcHHHHhcCCC---
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--T-----------------------G----VEFWIVNTDAQAMKVSPV---  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~-----------------------~----ve~iavNTD~~~L~~s~v---  158 (279)
                      .|..|.+||||+.|.+++.+.     +.  .                       .    ...++||||.+.|.....   
T Consensus         3 Eii~iq~GQ~GnqIg~~fW~~~~~ehgi~~~g~~~~~~~~~~~~~~~~fF~e~~~~~yvPRav~vDle~~~l~~i~~~~~   82 (426)
T 2btq_B            3 EILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGGDM   82 (426)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHHHHHTBCTTSBBCC-------CCCTTTEEEEETTEEEECEEEEEECC-----------
T ss_pred             cEEEEecCCcHhHHHHHHHHHHHHHcCCCCCCCccCcccccccccccceeeecCCCceeeeeEEEecCcccccccccccc
Confidence            578899999999999998762     00  0                       0    235899999988876432   


Q ss_pred             ---CCCCeEEcCcccccCCCCCCCchh-----hHHHHHHHHHHHHHHhcCCCE---EEEEeecCCCcccCHHHHHHHHHH
Q 044090          159 ---IPENRLQIGCELTRGLGAGGNPSV-----GMNAANESKVAIEEAISGADM---IFVTAGMGGGTGTGAAPVIAGIAK  227 (279)
Q Consensus       159 ---~a~~ri~iG~~~t~G~GaG~np~~-----G~eaa~e~~e~I~~~Le~~D~---vfIvAGLGGGTGSG~aPvIaeiak  227 (279)
                         ..++++++|++     |||+||++     |++++++.+++|++.+++||.   |||+||||||||||++|+|++.++
T Consensus        83 ~~lf~p~~i~~g~~-----gAgnn~a~G~~~~G~~~~e~~~d~Ir~~~e~cD~lqgf~i~~s~gGGTGSG~~~~l~e~l~  157 (426)
T 2btq_B           83 SQLFDESSIVRKIP-----GAANNWARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLR  157 (426)
T ss_dssp             -CCCCTTSEEECCS-----CCTTCHHHHHTHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEEESSSSTTTHHHHHHHHHHH
T ss_pred             ccccCccccccccc-----CccCcccccccchhHHHHHHHHHHHHHHHhcCCCcceEEEEEecCCCccccHHHHHHHHHH
Confidence               12578888864     89999555     589999999999999999995   999999999999999999999999


Q ss_pred             Hc----CCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          228 SM----GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       228 e~----gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      +.    ++++++|+|.|+.+|+.+++|||.+++++|.+++|++|+||||+|+++|
T Consensus       158 ~~y~~~~~lt~~V~p~p~~~e~~~~~yNa~lsl~~L~e~~D~~i~idN~al~~i~  212 (426)
T 2btq_B          158 QAYPKKRIFTFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIA  212 (426)
T ss_dssp             TTCTTSEEEEEEEECCGGGCCCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHH
T ss_pred             HHcCcCceEEEEEecCCccccchhhHHHHHHHHHHHHHhCCcceeeccHHHHHHH
Confidence            74    5899999999999999999999999999999999999999999999987

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*

Probab=99.94  E-value=6.2e-27  Score=229.98  Aligned_cols=162  Identities=19%  Similarity=0.295  Sum_probs=136.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHc-----CC--C----------------------c-------ceEEEEeCcHHHHhcCCC
Q 044090          115 AKIKVIGVGGGGSNAVNRMIES-----SM--T----------------------G-------VEFWIVNTDAQAMKVSPV  158 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~-----~~--~----------------------~-------ve~iavNTD~~~L~~s~v  158 (279)
                      ..|..|.+||||+.|-+++.+.     +.  .                      .       ...++||+|.+.|.....
T Consensus         4 rEii~iqvGQcGnqIG~~~We~~~~Ehgi~~~~g~~~~~~~~~~~~~~fF~~~~e~~~~~~vpRav~vDlep~vi~~i~~   83 (473)
T 2bto_A            4 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVKA   83 (473)
T ss_dssp             CEEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTTCCCSSSCCCSSSGGGTEEECSCC--CCEEECEEEEESSSHHHHHHHH
T ss_pred             ccEEEEecCCcHHHHHHHHHHHHHHhcCCCCCCCeecCCCcccccccceecccccccCCceeeeeeEecCcchhhhhhhc
Confidence            3588899999999999988652     11  1                      0       235889999998876432


Q ss_pred             CCCCeEEcCcc--cccCCCCCCCch-----hhHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090          159 IPENRLQIGCE--LTRGLGAGGNPS-----VGMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS  228 (279)
Q Consensus       159 ~a~~ri~iG~~--~t~G~GaG~np~-----~G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake  228 (279)
                      . + +.+++++  .+++.|||+||+     .|++++++.+++|++.+++||   +|||+||||||||||++|+|++.+++
T Consensus        84 ~-~-~~lf~p~~~it~~~GAgnn~a~G~~~~G~~~~ee~~d~Ir~~~e~cD~lqgf~i~~slgGGTGSG~~~~l~e~l~e  161 (473)
T 2bto_A           84 T-S-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKE  161 (473)
T ss_dssp             H-S-TTCSCGGGEEECSSCCTTCHHHHHTSHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEESSSSHHHHHHHHHHHHHHH
T ss_pred             c-c-cccccccceEecccCCCCCcCCCcchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeeCCCCCCcchHHHHHHHHHH
Confidence            1 1 5566665  577889999955     568999999999999999999   69999999999999999999999987


Q ss_pred             c----CCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          229 M----GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       229 ~----gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      .    .+++++|+|.|+.+|+..++|||.++|++|.+++|++|+||||+|+++|
T Consensus       162 ~y~~~~ilt~~V~P~~~~~e~~v~~yNa~lsl~~L~e~~D~~i~idNeaL~~i~  215 (473)
T 2bto_A          162 KYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLA  215 (473)
T ss_dssp             HTCSSCEEEEEEECCCCSSCEESHHHHHHHHHHHHHHTCSEEEEEEHHHHHHHH
T ss_pred             HcCCCceEEEEEecCCccccchhhHHHHHHHHHHHHhhCCeEEEeccHHHHHHh
Confidence            4    3788888888888999999999999999999999999999999999987

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*

Probab=99.90  E-value=1.6e-23  Score=205.89  Aligned_cols=160  Identities=16%  Similarity=0.222  Sum_probs=127.9

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC--C--------------c------------ceEEEEeCcHHHHhc---C---
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM--T--------------G------------VEFWIVNTDAQAMKV---S---  156 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~--~--------------~------------ve~iavNTD~~~L~~---s---  156 (279)
                      .|..|.+||||+.|-+++.+.     +.  .              +            ...+.||.+...+..   .   
T Consensus         4 EiItiqvGQ~GnqIG~~fWe~~~~Ehgi~~~g~~~~~~~~~~~~~~vfF~e~~~~~yvPRavlvDLEp~vid~i~~~~~~   83 (475)
T 3cb2_A            4 EIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYA   83 (475)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSCBCTTCCTTSSCGGGTEEECTTSCEEECEEEEESSSHHHHHHHHSTTT
T ss_pred             cEEEEecCCcHHHHHHHHHHHHHHhcCCCCCCCCcCcccccccccceeeeecCCCceecceeEecCCcceeeeecccccc
Confidence            488899999999999988643     10  0              0            134677876665543   1   


Q ss_pred             CCCCCCeEEcCcccccCCCCCCCchhhH----HHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-
Q 044090          157 PVIPENRLQIGCELTRGLGAGGNPSVGM----NAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-  228 (279)
Q Consensus       157 ~v~a~~ri~iG~~~t~G~GaG~np~~G~----eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-  228 (279)
                      ....++.+..|++   |.|||+||++|+    +++++..+.|++.+++||   +|||+||||||||||++|+|++.+++ 
T Consensus        84 ~lf~p~~~i~g~~---g~gAgnn~a~G~~~g~e~~d~~~d~Ir~~~E~cD~lqgf~i~~slGGGTGSG~~s~l~e~l~de  160 (475)
T 3cb2_A           84 KLYNPENIYLSEH---GGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDR  160 (475)
T ss_dssp             TTSCGGGEEECCT---TCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCccceeeccc---ccCCCCCchhhhhhhHhhHHHHHHHHHHHHhcCCCcceeEEeccCCCCCCcChHHHHHHHHHHH
Confidence            1122445666654   679999999986    677888999999999999   79999999999999999999999986 


Q ss_pred             c---CCcEEEEEccCC-CCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          229 M---GILTVGIATVPF-CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       229 ~---gi~tvaIvtlPf-~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      |   .+++++|++.|+ .+|+.+++|||.+++++|.+++|++|+|||++|+++|
T Consensus       161 y~~k~~lt~~V~P~~~e~se~vv~~yNa~lsl~~L~e~sD~~i~idNeaL~~i~  214 (475)
T 3cb2_A          161 YPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIA  214 (475)
T ss_dssp             STTSEEEEEEEECCTTSCCSCTTHHHHHHHHHHHHHHSCSEEEEEEHHHHHHHH
T ss_pred             cCCCceEEEEEECCccccccceeehhHhHHHHHHHHhhCCEEEEeccHHHHHHH
Confidence            5   366777766665 4678999999999999999999999999999999987

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...

Probab=99.87  E-value=9.1e-22  Score=192.18  Aligned_cols=158  Identities=21%  Similarity=0.312  Sum_probs=128.8

Q ss_pred             eEEEEeeCcchHHHHHHHHH-----cCCC--c--------------------------ceEEEEeCcHHHHhcC---C--
Q 044090          116 KIKVIGVGGGGSNAVNRMIE-----SSMT--G--------------------------VEFWIVNTDAQAMKVS---P--  157 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~-----~~~~--~--------------------------ve~iavNTD~~~L~~s---~--  157 (279)
                      .|.-|-+||||+-|-++..+     +++.  +                          ...+.||.+...++..   +  
T Consensus         3 Eii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~~~   82 (445)
T 3ryc_B            3 EIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFG   82 (445)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTSTTG
T ss_pred             eEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhccccc
Confidence            47789999999999887653     3321  1                          1236788876655431   1  


Q ss_pred             -CCCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHH-
Q 044090          158 -VIPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAK-  227 (279)
Q Consensus       158 -v~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiak-  227 (279)
                       ...++++..|++     |||+||++|     ++++++.++.|++.++.||   +|+|++|||||||||++++|++.++ 
T Consensus        83 ~lf~p~~~i~g~~-----gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~  157 (445)
T 3ryc_B           83 QIFRPDNFVFGQS-----GAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE  157 (445)
T ss_dssp             GGSCGGGEEECSS-----CCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHH
T ss_pred             ceecccceEEccc-----cccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHH
Confidence             112456666664     899999986     7899999999999999999   6999999999999999999998765 


Q ss_pred             HcC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          228 SMG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       228 e~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      +|+   +.+++|++.|+..|+..++|||.++++.|.+++|+++++||++|+++|
T Consensus       158 ey~kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic  211 (445)
T 3ryc_B          158 EYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDIC  211 (445)
T ss_dssp             HCTTSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHH
T ss_pred             HcCccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHH
Confidence            565   667888888878899999999999999999999999999999999998

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...

Probab=99.85  E-value=5.9e-21  Score=186.76  Aligned_cols=158  Identities=18%  Similarity=0.215  Sum_probs=127.8

Q ss_pred             eEEEEeeCcchHHHHHHHHH-----cCC--Cc----------------------------ceEEEEeCcHHHHhc---C-
Q 044090          116 KIKVIGVGGGGSNAVNRMIE-----SSM--TG----------------------------VEFWIVNTDAQAMKV---S-  156 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~-----~~~--~~----------------------------ve~iavNTD~~~L~~---s-  156 (279)
                      .|.-|=+||||+-|-+++.+     +++  .+                            ...+.||.+...++.   . 
T Consensus         3 Eii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~g~   82 (451)
T 3ryc_A            3 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT   82 (451)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHHST
T ss_pred             eEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeeecc
Confidence            46778999999999887653     321  00                            123678887665543   1 


Q ss_pred             --CCCCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHH
Q 044090          157 --PVIPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA  226 (279)
Q Consensus       157 --~v~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeia  226 (279)
                        ....++++..|++     |||+||++|     ++++++.++.|++.++.||   +|+|+++||||||||++++|++.+
T Consensus        83 ~~~lf~p~~~i~gk~-----gAgNNwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L  157 (451)
T 3ryc_A           83 YRQLFHPEQLITGKE-----DAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERL  157 (451)
T ss_dssp             TTTTSCGGGEEECSS-----CCTTCHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHH
T ss_pred             cccccCHHHeeeccc-----cccCCCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHH
Confidence              1123456666664     899999986     7899999999999999999   699999999999999999999977


Q ss_pred             H-HcC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          227 K-SMG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       227 k-e~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      + +|+   +++++|++.|...+...++|||.++++.|.+++|++|++||++|+++|
T Consensus       158 ~~ey~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic  213 (451)
T 3ryc_A          158 SVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC  213 (451)
T ss_dssp             HHHTTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHH
T ss_pred             HHhcCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHH
Confidence            6 565   566777777777888999999999999999999999999999999998

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.74  E-value=0.013  Score=43.81  Aligned_cols=95  Identities=21%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      .++|.|+|.|+.|..++..|.+.+  ..+.++++-+.+.+..... ..-.+..+           |.        ...+.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g--~~~v~~~~r~~~~~~~~~~-~~~~~~~~-----------d~--------~~~~~   62 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSS--NYSVTVADHDLAALAVLNR-MGVATKQV-----------DA--------KDEAG   62 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCS--SEEEEEEESCHHHHHHHHT-TTCEEEEC-----------CT--------TCHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHh-CCCcEEEe-----------cC--------CCHHH
Confidence            478999999999999999998853  2677788887766654210 01122211           11        11355


Q ss_pred             HHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090          194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI  236 (279)
Q Consensus       194 I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI  236 (279)
                      +.+.++++|.||.+++      ......+++.+.+.++..+-+
T Consensus        63 ~~~~~~~~d~vi~~~~------~~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           63 LAKALGGFDAVISAAP------FFLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             HHHHTTTCSEEEECSC------GGGHHHHHHHHHHTTCEEECC
T ss_pred             HHHHHcCCCEEEECCC------chhhHHHHHHHHHhCCCEEEe
Confidence            6777889999988762      334566778888888776643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.33  E-value=0.18  Score=40.54  Aligned_cols=99  Identities=18%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      ...+++|.|+|.|..|..++..|.+.   +.++++++.|.+.++...-.....+..+.        ..++          
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~---g~~V~vid~~~~~~~~~~~~~g~~~~~~d--------~~~~----------   74 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSS---GHSVVVVDKNEYAFHRLNSEFSGFTVVGD--------AAEF----------   74 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESCGGGGGGSCTTCCSEEEESC--------TTSH----------
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHhcCCCcEEEec--------CCCH----------
Confidence            34567999999999999999999875   46888899887766543200011222221        1111          


Q ss_pred             HHHHHHH-hcCCCEEEEEeecCCCccc-CHHHHHHHHHHH-cCC-cEEEEE
Q 044090          191 KVAIEEA-ISGADMIFVTAGMGGGTGT-GAAPVIAGIAKS-MGI-LTVGIA  237 (279)
Q Consensus       191 ~e~I~~~-Le~~D~vfIvAGLGGGTGS-G~aPvIaeiake-~gi-~tvaIv  237 (279)
                       +.+.+. ++++|.||++.+      + .....++++++. .+. .+++.+
T Consensus        75 -~~l~~~~~~~ad~Vi~~~~------~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           75 -ETLKECGMEKADMVFAFTN------DDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             -HHHHTTTGGGCSEEEECSS------CHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             -HHHHHcCcccCCEEEEEeC------CcHHHHHHHHHHHHHCCCCeEEEEE
Confidence             223333 678999888643      3 233455677777 453 334443

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.30  E-value=0.13  Score=47.13  Aligned_cols=105  Identities=19%  Similarity=0.294  Sum_probs=61.5

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH---HHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~---~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      |||.|||. |..|..++..|...++ ..+.+.+|.|.   ..++..+...+-++..-              .|       
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~-~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~--------------~~-------   58 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHTPGVAADLSHIETRATVKGY--------------LG-------   58 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSSHHHHHHHHTTSSSSCEEEEE--------------ES-------
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CcEEEEEeCCccHHHHHHHhccCcCceEEEe--------------cC-------
Confidence            69999998 9999999988876543 35677888874   11111111111122110              00       


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCcccC-------HHHHHHHHHH---HcC-CcEEEEEccCC
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGTG-------AAPVIAGIAK---SMG-ILTVGIATVPF  241 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG-------~aPvIaeiak---e~g-i~tvaIvtlPf  241 (279)
                      -...+++++++|.||+++|.....|--       -++++.++++   ++. --.+-+++-|-
T Consensus        59 t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv  120 (314)
T 1mld_A           59 PEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV  120 (314)
T ss_dssp             GGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred             CCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCc
Confidence            012456789999999999887655421       1255544443   333 23455567775

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.29  E-value=0.081  Score=40.65  Aligned_cols=91  Identities=23%  Similarity=0.284  Sum_probs=55.2

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      .|+|.|+|.|..|..++..|.+.   +.++++++.+.+.++.........+..|.        ..++           +.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~---g~~v~~~d~~~~~~~~~~~~~~~~~~~~d--------~~~~-----------~~   61 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEK---GHDIVLIDIDKDICKKASAEIDALVINGD--------CTKI-----------KT   61 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCSSEEEESC--------TTSH-----------HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHhcCcEEEEcC--------CCCH-----------HH
Confidence            47999999999999999999885   56788889887765432100011122221        0111           12


Q ss_pred             HHHH-hcCCCEEEEEeecCCCcccCH-HHHHHHHHHHcCCc
Q 044090          194 IEEA-ISGADMIFVTAGMGGGTGTGA-APVIAGIAKSMGIL  232 (279)
Q Consensus       194 I~~~-Le~~D~vfIvAGLGGGTGSG~-aPvIaeiake~gi~  232 (279)
                      +.+. ++++|.|+++.      +.-. ...+++++++++..
T Consensus        62 l~~~~~~~~d~vi~~~------~~~~~~~~~~~~~~~~~~~   96 (140)
T 1lss_A           62 LEDAGIEDADMYIAVT------GKEEVNLMSSLLAKSYGIN   96 (140)
T ss_dssp             HHHTTTTTCSEEEECC------SCHHHHHHHHHHHHHTTCC
T ss_pred             HHHcCcccCCEEEEee------CCchHHHHHHHHHHHcCCC
Confidence            2323 67899998874      2322 24456778887743

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.07  E-value=0.1  Score=47.96  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeCc----HHH-------HhcCCCCCCCeEEcCcccccCCCC
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNTD----AQA-------MKVSPVIPENRLQIGCELTRGLGA  176 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~----~ve~iavNTD----~~~-------L~~s~v~a~~ri~iG~~~t~G~Ga  176 (279)
                      +.+||.|+|. |..|..++..|...+.-    ..+.+.+|.+    .+.       |.....+....+..          
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~----------   73 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTA----------   73 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEE----------
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEE----------
Confidence            4589999998 99999999999876532    1477788887    322       22211100011111          


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCCcccC-------HHHHH---HHHHHHcC-Cc-EEEEEccCC
Q 044090          177 GGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTG-------AAPVI---AGIAKSMG-IL-TVGIATVPF  241 (279)
Q Consensus       177 G~np~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG-------~aPvI---aeiake~g-i~-tvaIvtlPf  241 (279)
                                    .....+++++||.||+++|....-|--       -++.+   ++.++++. .. .+-+++-|-
T Consensus        74 --------------~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv  136 (329)
T 1b8p_A           74 --------------HADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA  136 (329)
T ss_dssp             --------------ESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             --------------ecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch
Confidence                          012466789999999999988765532       12333   34445563 44 566777775

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.95  E-value=0.093  Score=41.17  Aligned_cols=98  Identities=13%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      .++|.|+|.|..|..++..|.+.   +.++++++.|.+.++...- ....+..|.        ..++           +.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~---g~~V~~id~~~~~~~~~~~-~~~~~~~gd--------~~~~-----------~~   62 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA---GKKVLAVDKSKEKIELLED-EGFDAVIAD--------PTDE-----------SF   62 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT---TCCEEEEESCHHHHHHHHH-TTCEEEECC--------TTCH-----------HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCeEEEEECCHHHHHHHHH-CCCcEEECC--------CCCH-----------HH
Confidence            45899999999999999999885   6788999998877654211 112222221        1122           12


Q ss_pred             HHH-HhcCCCEEEEEeecCCCcccC-HHHHHHHHHHHcC-CcEEEEEccC
Q 044090          194 IEE-AISGADMIFVTAGMGGGTGTG-AAPVIAGIAKSMG-ILTVGIATVP  240 (279)
Q Consensus       194 I~~-~Le~~D~vfIvAGLGGGTGSG-~aPvIaeiake~g-i~tvaIvtlP  240 (279)
                      +++ .++++|.|+++.+      .- ..-.++..+++++ ..+++.+..|
T Consensus        63 l~~~~~~~~d~vi~~~~------~~~~n~~~~~~a~~~~~~~iia~~~~~  106 (141)
T 3llv_A           63 YRSLDLEGVSAVLITGS------DDEFNLKILKALRSVSDVYAIVRVSSP  106 (141)
T ss_dssp             HHHSCCTTCSEEEECCS------CHHHHHHHHHHHHHHCCCCEEEEESCG
T ss_pred             HHhCCcccCCEEEEecC------CHHHHHHHHHHHHHhCCceEEEEEcCh
Confidence            222 3578998888533      32 2344567788776 4445554433

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.77  E-value=0.031  Score=47.57  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=61.9

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      |||.|+|.|..|..++..|.+.   +.++++++.|.+.++...-.....+..|.        ..++           +.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~---g~~v~vid~~~~~~~~l~~~~~~~~i~gd--------~~~~-----------~~l   58 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSR---KYGVVIINKDRELCEEFAKKLKATIIHGD--------GSHK-----------EIL   58 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT---TCCEEEEESCHHHHHHHHHHSSSEEEESC--------TTSH-----------HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHcCCeEEEcC--------CCCH-----------HHH
Confidence            6899999999999999999884   67899999998876542100122333332        1122           233


Q ss_pred             HHH-hcCCCEEEEEeecCCCcccCH-HHHHHHHHHH-cC-CcEEEEEccC
Q 044090          195 EEA-ISGADMIFVTAGMGGGTGTGA-APVIAGIAKS-MG-ILTVGIATVP  240 (279)
Q Consensus       195 ~~~-Le~~D~vfIvAGLGGGTGSG~-aPvIaeiake-~g-i~tvaIvtlP  240 (279)
                      +++ ++++|.|+++      |+.-. ...++.++++ ++ ..+++.+..|
T Consensus        59 ~~a~i~~ad~vi~~------~~~d~~n~~~~~~a~~~~~~~~iia~~~~~  102 (218)
T 3l4b_C           59 RDAEVSKNDVVVIL------TPRDEVNLFIAQLVMKDFGVKRVVSLVNDP  102 (218)
T ss_dssp             HHHTCCTTCEEEEC------CSCHHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred             HhcCcccCCEEEEe------cCCcHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence            343 7899988875      44433 4555677776 45 4445544344

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.58  E-value=0.19  Score=44.73  Aligned_cols=110  Identities=17%  Similarity=0.171  Sum_probs=60.3

Q ss_pred             ccccCCCCCCCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCC
Q 044090          101 ESLRQSSVPNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGN  179 (279)
Q Consensus       101 ~~~~~~~~~~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~n  179 (279)
                      ++...++...+..+++|+|.|. |..|..++.+|.+.   +.+.++++-+...   .    .-.+..+ ++         
T Consensus         6 ~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~---G~~V~~~~r~~~~---~----~~~~~~~-Dl---------   65 (347)
T 4id9_A            6 HHHHHSSGLVPRGSHMILVTGSAGRVGRAVVAALRTQ---GRTVRGFDLRPSG---T----GGEEVVG-SL---------   65 (347)
T ss_dssp             ---------------CEEEETTTSHHHHHHHHHHHHT---TCCEEEEESSCCS---S----CCSEEES-CT---------
T ss_pred             cCCCCCCcccccCCCEEEEECCCChHHHHHHHHHHhC---CCEEEEEeCCCCC---C----CccEEec-Cc---------
Confidence            3444455666788899999998 99999999999986   4566676543221   0    1122221 11         


Q ss_pred             chhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCCcccC----------HHHHHHHHHHHcCCcEEEEEcc
Q 044090          180 PSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTG----------AAPVIAGIAKSMGILTVGIATV  239 (279)
Q Consensus       180 p~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG----------~aPvIaeiake~gi~tvaIvtl  239 (279)
                               ...+.+.++++++|.||-+|+...-+..-          ++-.+++.+++.++..|..+..
T Consensus        66 ---------~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS  126 (347)
T 4id9_A           66 ---------EDGQALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS  126 (347)
T ss_dssp             ---------TCHHHHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             ---------CCHHHHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence                     12355677788999999998876654432          2345667777777654444443

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.41  E-value=1.5  Score=35.28  Aligned_cols=100  Identities=18%  Similarity=0.323  Sum_probs=61.3

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      ++|.|+|. |+.|..++.+|.+.   +.+.+++.-+...+.... ...-.+..+           |.        .+.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~---g~~V~~~~r~~~~~~~~~-~~~~~~~~~-----------D~--------~~~~~   60 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA---GYEVTVLVRDSSRLPSEG-PRPAHVVVG-----------DV--------LQAAD   60 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESCGGGSCSSS-CCCSEEEES-----------CT--------TSHHH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC---CCeEEEEEeChhhccccc-CCceEEEEe-----------cC--------CCHHH
Confidence            79999998 99999999999985   467777776655443210 011112111           11        12356


Q ss_pred             HHHHhcCCCEEEEEeecCCCcc-----cCHHHHHHHHHHHcCCcEEEEE
Q 044090          194 IEEAISGADMIFVTAGMGGGTG-----TGAAPVIAGIAKSMGILTVGIA  237 (279)
Q Consensus       194 I~~~Le~~D~vfIvAGLGGGTG-----SG~aPvIaeiake~gi~tvaIv  237 (279)
                      +.+.++++|.||.+++......     .-.+-.+++.+++.+...+..+
T Consensus        61 ~~~~~~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  109 (206)
T 1hdo_A           61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVAC  109 (206)
T ss_dssp             HHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHcCCCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEE
Confidence            7778889999988887544310     0124556677777665544443

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.41  E-value=0.26  Score=43.68  Aligned_cols=42  Identities=17%  Similarity=0.318  Sum_probs=32.3

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ..+.++.|||+||.|+.++..|...+..  ++..+|-|.-.+.+
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d~v~~sN   67 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDDDVHLSN   67 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCCBCCGGG
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCCCccccc
Confidence            4467999999999999999999987542  45667877654443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.37  E-value=0.15  Score=45.14  Aligned_cols=40  Identities=15%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      ..+.+|.|||+|+.|+.++..|.+.+..  ++..+|-|.-++
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v~~   68 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTVSL   68 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBCCG
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCccc
Confidence            4467999999999999999999986532  566678775333

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=94.37  E-value=0.25  Score=45.39  Aligned_cols=79  Identities=19%  Similarity=0.281  Sum_probs=49.6

Q ss_pred             CCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHH---H--HhcCCCCCCCeEEcCcccccCCCCCCCchhhHHH
Q 044090          113 NEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQ---A--MKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       113 ~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~---~--L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      +.|||.||| .|..|..++-.|.+.++ ..+.+.+|.|..   .  |.....  +-++..   .                
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~-~~ev~l~Di~~~~~~~~dL~~~~~--~~~v~~---~----------------   64 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPL-VSVLHLYDVVNAPGVTADISHMDT--GAVVRG---F----------------   64 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTT-EEEEEEEESSSHHHHHHHHHTSCS--SCEEEE---E----------------
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEeCCCcHhHHHHhhcccc--cceEEE---E----------------
Confidence            358999999 89999999999877532 356777886543   1  221110  111110   0                


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcc
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTG  215 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTG  215 (279)
                        ..-+.+.++++++|.||+++|....-|
T Consensus        65 --~~t~d~~~al~gaDvVi~~ag~~~~~g   91 (326)
T 1smk_A           65 --LGQQQLEAALTGMDLIIVPAGVPRKPG   91 (326)
T ss_dssp             --ESHHHHHHHHTTCSEEEECCCCCCCSS
T ss_pred             --eCCCCHHHHcCCCCEEEEcCCcCCCCC
Confidence              001345677899999999999876544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=93.78  E-value=1.7  Score=35.99  Aligned_cols=102  Identities=14%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH-HH
Q 044090          115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES-KV  192 (279)
Q Consensus       115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~-~e  192 (279)
                      |||.|.| -|+.|..++.+|.+.   +.+.+++.-+...+...   ..-.+..+           |.        .+ .+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~---g~~V~~~~R~~~~~~~~---~~~~~~~~-----------D~--------~d~~~   55 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTT---DYQIYAGARKVEQVPQY---NNVKAVHF-----------DV--------DWTPE   55 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTS---SCEEEEEESSGGGSCCC---TTEEEEEC-----------CT--------TSCHH
T ss_pred             CeEEEECCCCHHHHHHHHHHHHC---CCEEEEEECCccchhhc---CCceEEEe-----------cc--------cCCHH
Confidence            6899999 688999999999875   57778887665544321   11122221           11        12 46


Q ss_pred             HHHHHhcCCCEEEEEeecCCCc----ccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090          193 AIEEAISGADMIFVTAGMGGGT----GTGAAPVIAGIAKSMGILTVGIATVPF  241 (279)
Q Consensus       193 ~I~~~Le~~D~vfIvAGLGGGT----GSG~aPvIaeiake~gi~tvaIvtlPf  241 (279)
                      .+.++++++|.||-+++.....    -.-++-.+++.+++.+...+..+..-.
T Consensus        56 ~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           56 EMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             HHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence            6788889999999988876531    122355677888887766555554433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.49  E-value=0.081  Score=43.50  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ..+++|.|+|.|..|..++..|.+..  +.+++++|.|.+.+..
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~--g~~V~vid~~~~~~~~   78 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARY--GKISLGIEIREEAAQQ   78 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHH--CSCEEEEESCHHHHHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcc--CCeEEEEECCHHHHHH
Confidence            44678999999999999999998750  4678899998876654

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=93.47  E-value=0.17  Score=49.40  Aligned_cols=42  Identities=12%  Similarity=0.182  Sum_probs=30.5

Q ss_pred             CCceEEEEeeCcc-hHHHHHHHHHc--CCCcceEEEEeCcHHHHh
Q 044090          113 NEAKIKVIGVGGG-GSNAVNRMIES--SMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       113 ~~~kI~VIGIGga-G~NIVd~l~~~--~~~~ve~iavNTD~~~L~  154 (279)
                      .++||.|||.|.. |..++..|.++  ++.+-+.+.+|.|.+.++
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~   71 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQD   71 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHH
Confidence            3579999999997 44466677776  555677888888776544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.20  E-value=0.24  Score=37.98  Aligned_cols=92  Identities=17%  Similarity=0.250  Sum_probs=56.5

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      ..+|.|+|.|..|..++..|.+.   +.++++++.|.+.++.... ....+..+.        ..+           .+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~---g~~v~~~d~~~~~~~~~~~-~~~~~~~~d--------~~~-----------~~~   62 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRM---GHEVLAVDINEEKVNAYAS-YATHAVIAN--------ATE-----------ENE   62 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT---TCCCEEEESCHHHHHTTTT-TCSEEEECC--------TTC-----------HHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-hCCEEEEeC--------CCC-----------HHH
Confidence            35799999999999999999885   4577888888777665321 011222211        111           123


Q ss_pred             HHHH-hcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCc
Q 044090          194 IEEA-ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL  232 (279)
Q Consensus       194 I~~~-Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~  232 (279)
                      +.++ ++++|.|+++.+-.    .-....+++.+++++..
T Consensus        63 l~~~~~~~~d~vi~~~~~~----~~~~~~~~~~~~~~~~~   98 (144)
T 2hmt_A           63 LLSLGIRNFEYVIVAIGAN----IQASTLTTLLLKELDIP   98 (144)
T ss_dssp             HHTTTGGGCSEEEECCCSC----HHHHHHHHHHHHHTTCS
T ss_pred             HHhcCCCCCCEEEECCCCc----hHHHHHHHHHHHHcCCC
Confidence            3333 67899988864321    01234566778888754

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=93.13  E-value=0.28  Score=44.91  Aligned_cols=112  Identities=19%  Similarity=0.196  Sum_probs=62.6

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      +..+||.|||.|..|..++-.|...++ ..+.+.+|.|.+.++.....-.+.  .  ...   +  .+..+-   +    
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~~~~~~g~~~dl~~~--~--~~~---~--~~~~v~---~----   66 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLDTEKVRGDVMDLKHA--T--PYS---P--TTVRVK---A----   66 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSCHHHHHHHHHHHHHH--G--GGS---S--SCCEEE---E----
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCChhHhhhhhhhHHhh--h--hhc---C--CCeEEE---e----
Confidence            456899999999999999988877653 347788888765443200000000  0  000   0  000000   0    


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccC-------HHHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTG-------AAPVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG-------~aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                       .-.+++++||.|+++++....-|--       -++++.+++++   +. --.+-++|-|-
T Consensus        67 -~~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv  126 (317)
T 3d0o_A           67 -GEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPV  126 (317)
T ss_dssp             -CCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred             -CCHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcH
Confidence             0144688999999999887665531       13566555543   32 22344466665

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.13  E-value=0.064  Score=51.87  Aligned_cols=101  Identities=20%  Similarity=0.302  Sum_probs=68.1

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      +.|||.|+|.|..|..++..|.+   .+.++.+||.|.+.++...-.-+-+...|        -+.+|+           
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~---~~~~v~vId~d~~~~~~~~~~~~~~~i~G--------d~~~~~-----------   59 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVG---ENNDITIVDKDGDRLRELQDKYDLRVVNG--------HASHPD-----------   59 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCS---TTEEEEEEESCHHHHHHHHHHSSCEEEES--------CTTCHH-----------
T ss_pred             CcCEEEEECCCHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHhcCcEEEEE--------cCCCHH-----------
Confidence            68999999999999999999865   46789999999988865310012234333        333442           


Q ss_pred             HHHH-HhcCCCEEEEEeecCCCcccCHHH-HHHHHHHHc-C-CcEEEEEccCC
Q 044090          193 AIEE-AISGADMIFVTAGMGGGTGTGAAP-VIAGIAKSM-G-ILTVGIATVPF  241 (279)
Q Consensus       193 ~I~~-~Le~~D~vfIvAGLGGGTGSG~aP-vIaeiake~-g-i~tvaIvtlPf  241 (279)
                      -+++ -+++||+|+.+      |++=-.- +++.+||++ + ..+++.+-.|.
T Consensus        60 ~L~~Agi~~ad~~ia~------t~~De~Nl~~~~~Ak~~~~~~~~iar~~~~~  106 (461)
T 4g65_A           60 VLHEAGAQDADMLVAV------TNTDETNMAACQVAFTLFNTPNRIARIRSPQ  106 (461)
T ss_dssp             HHHHHTTTTCSEEEEC------CSCHHHHHHHHHHHHHHHCCSSEEEECCCHH
T ss_pred             HHHhcCCCcCCEEEEE------cCChHHHHHHHHHHHHhcCCccceeEeccch
Confidence            2333 37899987763      6665554 446788874 4 66677776664

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.09  E-value=0.45  Score=39.56  Aligned_cols=100  Identities=21%  Similarity=0.218  Sum_probs=60.9

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      ++|+|.|. |+.|..++.+|.+.   +.+.+++.-+...+....  ..-.+..+           |.        .+.+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~--~~~~~~~~-----------Dl--------~d~~~   60 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNR---GFEVTAVVRHPEKIKIEN--EHLKVKKA-----------DV--------SSLDE   60 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTT---TCEEEEECSCGGGCCCCC--TTEEEECC-----------CT--------TCHHH
T ss_pred             CEEEEEcCCchHHHHHHHHHHHC---CCEEEEEEcCcccchhcc--CceEEEEe-----------cC--------CCHHH
Confidence            68999995 89999999999985   467778876655543221  11122211           11        13456


Q ss_pred             HHHHhcCCCEEEEEeecCCCc------ccCHHHHHHHHHHHcCCcEEEEEc
Q 044090          194 IEEAISGADMIFVTAGMGGGT------GTGAAPVIAGIAKSMGILTVGIAT  238 (279)
Q Consensus       194 I~~~Le~~D~vfIvAGLGGGT------GSG~aPvIaeiake~gi~tvaIvt  238 (279)
                      +.++++++|.||-+++.....      -.-++-.+++.+++.++..+..+.
T Consensus        61 ~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S  111 (227)
T 3dhn_A           61 VCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVG  111 (227)
T ss_dssp             HHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            777888999998877543211      012345567777777765555443

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=92.91  E-value=0.26  Score=47.75  Aligned_cols=75  Identities=21%  Similarity=0.405  Sum_probs=48.2

Q ss_pred             CceEEEEeeCcc-hHHHHHHHHH--cCCCcceEEEEeCcH--HHHhcC---------CCCCCCeEEcCcccccCCCCCCC
Q 044090          114 EAKIKVIGVGGG-GSNAVNRMIE--SSMTGVEFWIVNTDA--QAMKVS---------PVIPENRLQIGCELTRGLGAGGN  179 (279)
Q Consensus       114 ~~kI~VIGIGga-G~NIVd~l~~--~~~~~ve~iavNTD~--~~L~~s---------~v~a~~ri~iG~~~t~G~GaG~n  179 (279)
                      .+||.|||.|.. |..++..|.+  .++..-+.+.+|.|.  +.++..         ....+.+|...            
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t------------   74 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLT------------   74 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEE------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEe------------
Confidence            579999999998 6677777877  345466777888877  443320         01011222210            


Q ss_pred             chhhHHHHHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090          180 PSVGMNAANESKVAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       180 p~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGG  212 (279)
                                  ....+++++||.|+++++.++
T Consensus        75 ------------~D~~eal~gAD~VVitagv~~   95 (450)
T 1s6y_A           75 ------------LDRRRALDGADFVTTQFRVGG   95 (450)
T ss_dssp             ------------SCHHHHHTTCSEEEECCCTTH
T ss_pred             ------------CCHHHHhCCCCEEEEcCCCCC
Confidence                        113567899999999998764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.89  E-value=0.76  Score=42.31  Aligned_cols=41  Identities=12%  Similarity=0.107  Sum_probs=31.1

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      ...+||.|||.|..|..++..|...+.  ++.+.+|.|.+.++
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~~g~--~~V~L~D~~~~~~~   47 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCALREL--ADVVLYDVVKGMPE   47 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTC--CEEEEECSSSSHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEECChhHHH
Confidence            345899999999999999999988654  25666777654443

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.85  E-value=0.39  Score=44.85  Aligned_cols=44  Identities=20%  Similarity=0.370  Sum_probs=33.0

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ......+|.|||+||.|+.++..|...+..  ++..+|.|.-++.+
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sN  157 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIG--EIILIDNDQIENTN  157 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEEECCBCCGGG
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCC--eEEEECCCcCcccc
Confidence            345578999999999999999999987642  45567877544433

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.79  E-value=0.23  Score=47.44  Aligned_cols=97  Identities=13%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      .+++|.|||.|..|..++..|.+.   +.++++|+.|.+.++.... ...++..|.        +.++           +
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~---g~~vvvId~d~~~v~~~~~-~g~~vi~GD--------at~~-----------~   59 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSS---GVKMVVLDHDPDHIETLRK-FGMKVFYGD--------ATRM-----------D   59 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHT---TCCEEEEECCHHHHHHHHH-TTCCCEESC--------TTCH-----------H
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHh-CCCeEEEcC--------CCCH-----------H
Confidence            357899999999999999999884   6789999999887664311 122344432        1122           2


Q ss_pred             HHHHH-hcCCCEEEEEeecCCCccc-CHHHHHHHHHHHcC--CcEEEEEc
Q 044090          193 AIEEA-ISGADMIFVTAGMGGGTGT-GAAPVIAGIAKSMG--ILTVGIAT  238 (279)
Q Consensus       193 ~I~~~-Le~~D~vfIvAGLGGGTGS-G~aPvIaeiake~g--i~tvaIvt  238 (279)
                      .++++ ++.+|+|+++.      +. -....++..+|+++  +.+++-+.
T Consensus        60 ~L~~agi~~A~~viv~~------~~~~~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           60 LLESAGAAKAEVLINAI------DDPQTNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HHHHTTTTTCSEEEECC------SSHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHhcCCCccCEEEECC------CChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            33444 78999888853      33 34566678888865  35555543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.73  E-value=0.3  Score=45.73  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA  152 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~  152 (279)
                      ++.+||.|||. |+.|..++-.+...+. .-+.+.+|.|...
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~~~k   46 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPFAVG   46 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSCHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCCchh
Confidence            44689999998 9999999988888764 2367788887543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.37  E-value=0.56  Score=43.30  Aligned_cols=38  Identities=16%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      +..+||.|||.|..|..++..|...++ . +...+|.|.+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~-~-~v~l~Di~~~   40 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQL-G-DVVLFDIAQG   40 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-c-eEEEEeCChH
Confidence            456899999999999999999988765 3 8888888654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.35  E-value=0.81  Score=41.76  Aligned_cols=101  Identities=22%  Similarity=0.256  Sum_probs=60.7

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh-------cC--CCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK-------VS--PVIPENRLQIGCELTRGLGAGGNPSVGMN  185 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~-------~s--~v~a~~ri~iG~~~t~G~GaG~np~~G~e  185 (279)
                      |||.|||.|..|..++-.|...+.- -+...+|.|.+.++       ..  ..+.+.++....                 
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~-~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~-----------------   62 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDV-DEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA-----------------   62 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCC-SEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEES-----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCC-CeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeC-----------------
Confidence            7999999999999999888776531 26677787765442       10  011111222100                 


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEeecCCCcccC-------HHHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          186 AANESKVAIEEAISGADMIFVTAGMGGGTGTG-------AAPVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG-------~aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                            +  .+.++++|.|++++|..-.-|.-       -++++.+++++   +. --.+-+++-|-
T Consensus        63 ------d--~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPv  121 (294)
T 1oju_A           63 ------D--YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM  121 (294)
T ss_dssp             ------C--GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH
T ss_pred             ------C--HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcc
Confidence                  1  34678999999999887655442       24555555443   33 33455666664

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=92.26  E-value=0.75  Score=41.70  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeC--cHH
Q 044090          115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNT--DAQ  151 (279)
Q Consensus       115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNT--D~~  151 (279)
                      |||.|+| .|..|..++..|...+. ..+...+|.  |.+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~~   39 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDKED   39 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGGHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEcCCCChh
Confidence            6999999 99999999999887653 346777887  654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.20  E-value=0.63  Score=42.73  Aligned_cols=101  Identities=23%  Similarity=0.295  Sum_probs=58.9

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc-----CCC---CCCCeEEcCcccccCCCCCCCchhhHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-----SPV---IPENRLQIGCELTRGLGAGGNPSVGMN  185 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~-----s~v---~a~~ri~iG~~~t~G~GaG~np~~G~e  185 (279)
                      ++||.|||.|..|..++-.|...++ ..+.+.+|.|.+.++.     .+.   ..+-++.-+                  
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~-~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~------------------   65 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG------------------   65 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEEC------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCC-CCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEEC------------------
Confidence            4799999999999999988877654 3578889988655542     110   001111100                  


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEeecCCCccc-------CHHHHHHHHHH---HcC-CcEEEEEccCC
Q 044090          186 AANESKVAIEEAISGADMIFVTAGMGGGTGT-------GAAPVIAGIAK---SMG-ILTVGIATVPF  241 (279)
Q Consensus       186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGS-------G~aPvIaeiak---e~g-i~tvaIvtlPf  241 (279)
                              -.+++++||.|+++++....-|-       --++++.++++   ++. --.+-++|-|-
T Consensus        66 --------~~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv  124 (318)
T 1ez4_A           66 --------EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV  124 (318)
T ss_dssp             --------CGGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred             --------CHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcH
Confidence                    03458899999999987654432       11366655554   333 22344457775

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.16  E-value=0.24  Score=41.76  Aligned_cols=42  Identities=12%  Similarity=0.104  Sum_probs=29.6

Q ss_pred             CCCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          109 PNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       109 ~~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      ...+.+++|.|.|. |+.|..++.+|.+.   +.+.+++.-+...+
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~---G~~V~~~~R~~~~~   58 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNK---GHEPVAMVRNEEQG   58 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESSGGGH
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhC---CCeEEEEECChHHH
Confidence            34577899999998 99999999999985   45666666554443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.94  E-value=0.39  Score=38.33  Aligned_cols=100  Identities=13%  Similarity=0.125  Sum_probs=61.5

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc-HH---HHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD-AQ---AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAAN  188 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD-~~---~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~  188 (279)
                      .+.+|.|+|.|..|..++..|.+.   +.++.+++.| .+   .+... .+..-.+..|.        ..++        
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~---g~~V~vid~~~~~~~~~~~~~-~~~~~~~i~gd--------~~~~--------   61 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQR---GQNVTVISNLPEDDIKQLEQR-LGDNADVIPGD--------SNDS--------   61 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHT---TCCEEEEECCCHHHHHHHHHH-HCTTCEEEESC--------TTSH--------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC---CCCEEEEECCChHHHHHHHHh-hcCCCeEEEcC--------CCCH--------
Confidence            456899999999999999999884   5788889886 33   33221 00122333332        1122        


Q ss_pred             HHHHHHHHH-hcCCCEEEEEeecCCCcccC-HHHHHHHHHHHc-C-CcEEEEEccCC
Q 044090          189 ESKVAIEEA-ISGADMIFVTAGMGGGTGTG-AAPVIAGIAKSM-G-ILTVGIATVPF  241 (279)
Q Consensus       189 e~~e~I~~~-Le~~D~vfIvAGLGGGTGSG-~aPvIaeiake~-g-i~tvaIvtlPf  241 (279)
                         +.++++ ++++|.|+++.      +.- ..-.++..++++ + ..+++.+.-|.
T Consensus        62 ---~~l~~a~i~~ad~vi~~~------~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~  109 (153)
T 1id1_A           62 ---SVLKKAGIDRCRAILALS------DNDADNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             ---HHHHHHTTTTCSEEEECS------SCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             ---HHHHHcChhhCCEEEEec------CChHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence               234444 88999888853      333 345556778876 4 45666554443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=91.81  E-value=0.64  Score=42.79  Aligned_cols=95  Identities=12%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      +..+|||.|+|.|..|.-++..|.+    ..+..+++-+.+.++...-. -..+.+  +      +            .+
T Consensus        13 ~g~~mkilvlGaG~vG~~~~~~L~~----~~~v~~~~~~~~~~~~~~~~-~~~~~~--d------~------------~d   67 (365)
T 3abi_A           13 EGRHMKVLILGAGNIGRAIAWDLKD----EFDVYIGDVNNENLEKVKEF-ATPLKV--D------A------------SN   67 (365)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHTT----TSEEEEEESCHHHHHHHTTT-SEEEEC--C------T------------TC
T ss_pred             cCCccEEEEECCCHHHHHHHHHHhc----CCCeEEEEcCHHHHHHHhcc-CCcEEE--e------c------------CC
Confidence            4668999999999999999988854    24555667777777653210 111211  0      0            13


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI  236 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI  236 (279)
                      .+.+.++++++|+|+-+.  +.-    ..+.+++.+-+.++..+-+
T Consensus        68 ~~~l~~~~~~~DvVi~~~--p~~----~~~~v~~~~~~~g~~yvD~  107 (365)
T 3abi_A           68 FDKLVEVMKEFELVIGAL--PGF----LGFKSIKAAIKSKVDMVDV  107 (365)
T ss_dssp             HHHHHHHHTTCSEEEECC--CGG----GHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHHhCCCEEEEec--CCc----ccchHHHHHHhcCcceEee
Confidence            467888899999876543  322    4577888888888776654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=91.76  E-value=0.79  Score=37.57  Aligned_cols=95  Identities=13%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      |||+|+|. |+.|..++.+|.+.   +.+.+++.-+...+....  ..-.+..+. ++       +++.           
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~---g~~V~~~~R~~~~~~~~~--~~~~~~~~D-~~-------d~~~-----------   56 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNR---GHEVTAIVRNAGKITQTH--KDINILQKD-IF-------DLTL-----------   56 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCSHHHHHHC--SSSEEEECC-GG-------GCCH-----------
T ss_pred             CeEEEEcCCchhHHHHHHHHHhC---CCEEEEEEcCchhhhhcc--CCCeEEecc-cc-------Chhh-----------
Confidence            68999996 88999999999986   467777776655554321  112222221 11       1110           


Q ss_pred             HHHHhcCCCEEEEEeecCCCcccC---HHHHHHHHHHHcCCcEEE
Q 044090          194 IEEAISGADMIFVTAGMGGGTGTG---AAPVIAGIAKSMGILTVG  235 (279)
Q Consensus       194 I~~~Le~~D~vfIvAGLGGGTGSG---~aPvIaeiake~gi~tva  235 (279)
                        +.++++|.||.++|.....-..   .+-.+++.+++.+...+.
T Consensus        57 --~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v   99 (221)
T 3ew7_A           57 --SDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLL   99 (221)
T ss_dssp             --HHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEE
T ss_pred             --hhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCCceEE
Confidence              5678899999988875443221   234455666665544333

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=91.69  E-value=1.1  Score=43.58  Aligned_cols=41  Identities=12%  Similarity=0.412  Sum_probs=29.5

Q ss_pred             ceEEEEeeCcch--HHHHHHHHHcC-CC--cceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGG--SNAVNRMIESS-MT--GVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG--~NIVd~l~~~~-~~--~ve~iavNTD~~~L~~  155 (279)
                      |||.|||-|..|  -+++..+.... +.  ..+++.+|.|.+.|+.
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~   46 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNA   46 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHH
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHH
Confidence            799999988755  34666665543 32  4688999999887764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=91.65  E-value=0.74  Score=42.48  Aligned_cols=103  Identities=20%  Similarity=0.261  Sum_probs=59.8

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc-----CCCC---CCCeEEcCcccccCCCCCCCchhh
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-----SPVI---PENRLQIGCELTRGLGAGGNPSVG  183 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~-----s~v~---a~~ri~iG~~~t~G~GaG~np~~G  183 (279)
                      ...+||.|||.|..|..++-.|...++ ..+.+.+|.|.+.++.     .+..   .+-++.-+                
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~-~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~----------------   69 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGI-AQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA----------------   69 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEEC----------------
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCC-CCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEEC----------------
Confidence            455899999999999999988877654 3578888987654432     1110   01111100                


Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeecCCCccc-------CHHHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          184 MNAANESKVAIEEAISGADMIFVTAGMGGGTGT-------GAAPVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGS-------G~aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                                -.+.+++||.|+++++....-|-       --++++.++++.   +. --.+-++|-|-
T Consensus        70 ----------~~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv  128 (326)
T 2zqz_A           70 ----------EYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV  128 (326)
T ss_dssp             ----------CGGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH
T ss_pred             ----------CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence                      03457899999999988765443       113555555543   32 22344467775

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=91.42  E-value=0.78  Score=40.71  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=31.6

Q ss_pred             cCCCCCCCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          104 RQSSVPNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       104 ~~~~~~~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      ..++.+..+.+|+|+|.|. |+.|..++.+|.+.   +.+.++++-
T Consensus        10 ~~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~---g~~V~~~~r   52 (330)
T 2pzm_A           10 HSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQ---GHEILVIDN   52 (330)
T ss_dssp             ----CCSTTTCCEEEEETTTSHHHHHHHHHHGGG---TCEEEEEEC
T ss_pred             cccCCcccCCCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEEC
Confidence            3445667788999999998 88999999999885   467767654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.35  E-value=0.35  Score=38.25  Aligned_cols=95  Identities=18%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      +.+|.|+|.|..|..++..|.+.   +.++++++.|.+.++...- ..-.+..|.        ..++           +.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~---g~~v~vid~~~~~~~~~~~-~g~~~i~gd--------~~~~-----------~~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS---DIPLVVIETSRTRVDELRE-RGVRAVLGN--------AANE-----------EI   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT---TCCEEEEESCHHHHHHHHH-TTCEEEESC--------TTSH-----------HH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHH-cCCCEEECC--------CCCH-----------HH
Confidence            45899999999999999999884   6789999999887764211 112333332        1222           12


Q ss_pred             HHH-HhcCCCEEEEEeecCCCcccCH-HHHHHHHHHHc--CCcEEEEE
Q 044090          194 IEE-AISGADMIFVTAGMGGGTGTGA-APVIAGIAKSM--GILTVGIA  237 (279)
Q Consensus       194 I~~-~Le~~D~vfIvAGLGGGTGSG~-aPvIaeiake~--gi~tvaIv  237 (279)
                      +++ .++++|.++++      |+.-. ...++..++++  ...+++.+
T Consensus        64 l~~a~i~~ad~vi~~------~~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           64 MQLAHLECAKWLILT------IPNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             HHHTTGGGCSEEEEC------CSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             HHhcCcccCCEEEEE------CCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            222 36789988885      34433 34466677765  35666654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=91.30  E-value=0.82  Score=39.47  Aligned_cols=99  Identities=15%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      |||+|.|. |..|..++.+|.+.  .+.+.+++.-+...+.... ...-.+..+           |.        .+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~--~g~~V~~~~R~~~~~~~~~-~~~v~~~~~-----------D~--------~d~~~   58 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDW-RGKVSVRQL-----------DY--------FNQES   58 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHT--TCTTEEEEESSGGGSCGGG-BTTBEEEEC-----------CT--------TCHHH
T ss_pred             CEEEEEcCCchHHHHHHHHHhhC--CCCcEEEEECCHHHHHHhh-hCCCEEEEc-----------CC--------CCHHH
Confidence            68999996 89999999998774  2456666655444322110 001111111           11        12345


Q ss_pred             HHHHhcCCCEEEEEeecCCCccc--CHHHHHHHHHHHcCCcEEE
Q 044090          194 IEEAISGADMIFVTAGMGGGTGT--GAAPVIAGIAKSMGILTVG  235 (279)
Q Consensus       194 I~~~Le~~D~vfIvAGLGGGTGS--G~aPvIaeiake~gi~tva  235 (279)
                      +.++++++|.||.+++.......  -.+-.+++.+++.++..|.
T Consensus        59 l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv  102 (289)
T 3e48_A           59 MVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHII  102 (289)
T ss_dssp             HHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEE
Confidence            66677777877777654332111  1223445666666644333

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=91.23  E-value=1  Score=40.72  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeCc
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNTD  149 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~----~ve~iavNTD  149 (279)
                      .|||.|+|. |..|..++..|.+.+.-    ..+.+.+|.+
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            479999997 99999999999876531    1367778765

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=91.21  E-value=1  Score=40.28  Aligned_cols=98  Identities=14%  Similarity=0.192  Sum_probs=57.9

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH----HHHhcCC-C-CCCCeEEcCcccccCCCCCCCchhhH
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA----QAMKVSP-V-IPENRLQIGCELTRGLGAGGNPSVGM  184 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~----~~L~~s~-v-~a~~ri~iG~~~t~G~GaG~np~~G~  184 (279)
                      +.+++|+|+|. |..|..++.+|.+.+   .+.+++.-+.    ..+.... . ...-.+..+.           .    
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~D-----------l----   69 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGL-----------I----   69 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT---CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECC-----------T----
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC---CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEee-----------c----
Confidence            45679999999 999999999999864   4555554322    2221000 0 0011222221           1    


Q ss_pred             HHHHHHHHHHHHHhc--CCCEEEEEeecCCCcccCHHHHHHHHHHHcC-CcEE
Q 044090          185 NAANESKVAIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTV  234 (279)
Q Consensus       185 eaa~e~~e~I~~~Le--~~D~vfIvAGLGGGTGSG~aPvIaeiake~g-i~tv  234 (279)
                          .+.+.+.++++  ++|.||-+++..   .....-.+++.+++.+ +..|
T Consensus        70 ----~d~~~l~~~~~~~~~d~Vi~~a~~~---n~~~~~~l~~aa~~~g~v~~~  115 (346)
T 3i6i_A           70 ----NEQEAMEKILKEHEIDIVVSTVGGE---SILDQIALVKAMKAVGTIKRF  115 (346)
T ss_dssp             ----TCHHHHHHHHHHTTCCEEEECCCGG---GGGGHHHHHHHHHHHCCCSEE
T ss_pred             ----CCHHHHHHHHhhCCCCEEEECCchh---hHHHHHHHHHHHHHcCCceEE
Confidence                12455677777  999998887653   3344567778888877 5544

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.16  E-value=1.3  Score=41.00  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA  152 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~  152 (279)
                      ..+||.|||.|..|..++-.|...+.- -+...+|.|.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~-~~l~l~D~~~~k   42 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGIT-DELVVIDVNKEK   42 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCC-SEEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC-ceEEEEecchHH
Confidence            457999999999999999999886542 277788887653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=91.11  E-value=0.67  Score=42.52  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=27.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      |||.|||.|+.|..++-.|..+.+- -|...+|.+.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~-~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDV-DEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCC-SEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC-CEEEEEeCCC
Confidence            7999999999999999888876542 3667777753

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.10  E-value=0.51  Score=43.88  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=32.7

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      .+...+||.|||.|+.|..++-.|...++- -+...+|.+.+.+
T Consensus         5 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~-~el~l~D~~~~k~   47 (326)
T 3vku_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIA-QEIGIVDIFKDKT   47 (326)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHTCC-SEEEEECSCHHHH
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCC-CeEEEEeCChHHH
Confidence            356678999999999999999999887542 2777888876533

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=91.10  E-value=0.49  Score=44.39  Aligned_cols=82  Identities=15%  Similarity=0.281  Sum_probs=52.4

Q ss_pred             CCCCCceEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeCcH---------HHHhcCCCCCCCeEEcCcccccCCC
Q 044090          110 NNNNEAKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNTDA---------QAMKVSPVIPENRLQIGCELTRGLG  175 (279)
Q Consensus       110 ~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~----ve~iavNTD~---------~~L~~s~v~a~~ri~iG~~~t~G~G  175 (279)
                      ..+...||.|+|. |+.|..++-.|....+-+    ++...+|.+.         .+|.....+...++.++.+      
T Consensus        20 ~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~------   93 (345)
T 4h7p_A           20 GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTAD------   93 (345)
T ss_dssp             --CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESC------
T ss_pred             CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCC------
Confidence            3456789999997 999999987777665422    5777777642         1233333322334444321      


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCCcc
Q 044090          176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTG  215 (279)
Q Consensus       176 aG~np~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTG  215 (279)
                                        ..+.++++|.|+|++|.-=.-|
T Consensus        94 ------------------~~~a~~~advVvi~aG~prkpG  115 (345)
T 4h7p_A           94 ------------------PRVAFDGVAIAIMCGAFPRKAG  115 (345)
T ss_dssp             ------------------HHHHTTTCSEEEECCCCCCCTT
T ss_pred             ------------------hHHHhCCCCEEEECCCCCCCCC
Confidence                              2457899999999998865544

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=90.95  E-value=0.46  Score=42.68  Aligned_cols=107  Identities=16%  Similarity=0.146  Sum_probs=60.3

Q ss_pred             CCCCCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090          110 NNNNEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAAN  188 (279)
Q Consensus       110 ~~~~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~  188 (279)
                      ..+..++|+|.| -|..|..++.+|.+.  .+.+.++++-+...+........-++..+           |..       
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~r~~~~~~~~~~~~~v~~~~~-----------Dl~-------   79 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILET--TDWEVFGMDMQTDRLGDLVKHERMHFFEG-----------DIT-------   79 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHH--SSCEEEEEESCCTTTGGGGGSTTEEEEEC-----------CTT-------
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhC--CCCEEEEEeCChhhhhhhccCCCeEEEeC-----------ccC-------
Confidence            445678999999 499999999999986  25677777654333222100001122221           110       


Q ss_pred             HHHHHHHHHhcCCCEEEEEeecCCCccc------------CHHHHHHHHHHHcCCcEEEEE
Q 044090          189 ESKVAIEEAISGADMIFVTAGMGGGTGT------------GAAPVIAGIAKSMGILTVGIA  237 (279)
Q Consensus       189 e~~e~I~~~Le~~D~vfIvAGLGGGTGS------------G~aPvIaeiake~gi~tvaIv  237 (279)
                      ++.+.+.++++++|.||-+|+......+            .++-.+++.+++.+ ..+..+
T Consensus        80 ~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~  139 (372)
T 3slg_A           80 INKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFP  139 (372)
T ss_dssp             TCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEE
T ss_pred             CCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEe
Confidence            1234566667789999998887653221            11234667777766 444433

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=90.82  E-value=1  Score=44.09  Aligned_cols=42  Identities=19%  Similarity=0.442  Sum_probs=30.4

Q ss_pred             CceEEEEeeCcc--hHHHHHHHHHc-CCCcceEEEEeCcHHHHhc
Q 044090          114 EAKIKVIGVGGG--GSNAVNRMIES-SMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       114 ~~kI~VIGIGga--G~NIVd~l~~~-~~~~ve~iavNTD~~~L~~  155 (279)
                      .+||.|||.|..  |..++..|.+. .+.+.+.+.+|.|.+.++.
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~   47 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA   47 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH
Confidence            579999999984  56677777653 3346788888888765543

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=90.74  E-value=2.9  Score=34.67  Aligned_cols=78  Identities=21%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ..++|.|.|. |+.|..++.+|.+.+ .+.+.+++.-+...+....  ..-.+..+           |.        .+.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~-~g~~V~~~~r~~~~~~~~~--~~~~~~~~-----------D~--------~d~   60 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGS-DKFVAKGLVRSAQGKEKIG--GEADVFIG-----------DI--------TDA   60 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTT-TTCEEEEEESCHHHHHHTT--CCTTEEEC-----------CT--------TSH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcC-CCcEEEEEEcCCCchhhcC--CCeeEEEe-----------cC--------CCH
Confidence            4578999995 888999999999863 2577777877766554321  11112211           11        123


Q ss_pred             HHHHHHhcCCCEEEEEeecCC
Q 044090          192 VAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      +.+.++++++|.||-+++...
T Consensus        61 ~~~~~~~~~~d~vi~~a~~~~   81 (253)
T 1xq6_A           61 DSINPAFQGIDALVILTSAVP   81 (253)
T ss_dssp             HHHHHHHTTCSEEEECCCCCC
T ss_pred             HHHHHHHcCCCEEEEeccccc
Confidence            567777889999999888654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.74  E-value=0.39  Score=43.99  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      ..+||.|||.|..|..++-.+...++ ..+.+.+|.|.+
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~-~~ev~L~Di~~~   50 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGI-ADRLVLLDLSEG   50 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEcCCcc
Confidence            34799999999999999999887653 347778888764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=90.62  E-value=1.3  Score=41.30  Aligned_cols=41  Identities=22%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      .....+||.|||.|+.|..++-.|...+. ..+...+|.+.+
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~-~~el~L~Di~~~   55 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDL-ADELALVDVIED   55 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCHH
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEeCChH
Confidence            34667899999999999999999887642 236777887654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.59  E-value=0.35  Score=41.27  Aligned_cols=98  Identities=13%  Similarity=0.096  Sum_probs=60.9

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      .+++|.|+|.|..|..++..|.+.   +. +++++.|.+.+....  ....+..|.        ..+           .+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~---g~-v~vid~~~~~~~~~~--~~~~~i~gd--------~~~-----------~~   62 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGS---EV-FVLAEDENVRKKVLR--SGANFVHGD--------PTR-----------VS   62 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTS---EE-EEEESCGGGHHHHHH--TTCEEEESC--------TTC-----------HH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhC---Ce-EEEEECCHHHHHHHh--cCCeEEEcC--------CCC-----------HH
Confidence            356899999999999999998663   56 888888876654321  122333332        112           23


Q ss_pred             HHHHH-hcCCCEEEEEeecCCCcccCH-HHHHHHHHHHcCC--cEEEEEccCC
Q 044090          193 AIEEA-ISGADMIFVTAGMGGGTGTGA-APVIAGIAKSMGI--LTVGIATVPF  241 (279)
Q Consensus       193 ~I~~~-Le~~D~vfIvAGLGGGTGSG~-aPvIaeiake~gi--~tvaIvtlPf  241 (279)
                      .++++ ++++|.|+++      |+.-. ...++..+++++.  .+++.+..|.
T Consensus        63 ~l~~a~i~~ad~vi~~------~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~  109 (234)
T 2aef_A           63 DLEKANVRGARAVIVD------LESDSETIHCILGIRKIDESVRIIAEAERYE  109 (234)
T ss_dssp             HHHHTTCTTCSEEEEC------CSCHHHHHHHHHHHHHHCSSSEEEEECSSGG
T ss_pred             HHHhcCcchhcEEEEc------CCCcHHHHHHHHHHHHHCCCCeEEEEECCHh
Confidence            34444 7899988885      34433 3455678888763  5666654443

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=90.47  E-value=0.9  Score=41.50  Aligned_cols=100  Identities=20%  Similarity=0.244  Sum_probs=61.2

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc-----CCCC---CCCeEEcCcccccCCCCCCCchhhHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-----SPVI---PENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~-----s~v~---a~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      +||.|||.|..|..++-.|...++ .-+.+.+|.|.+.++.     .+..   .+-++..+                   
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~-~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~-------------------   60 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGV-AREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG-------------------   60 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEEC-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEEC-------------------
Confidence            699999999999999988887654 3478889998654442     1110   01111110                   


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcccC-------HHHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTGTG-------AAPVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG-------~aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                             -.+.+++||.|+++++....-|--       -++++.++++.   +. --.+-++|-|-
T Consensus        61 -------~~~a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv  119 (310)
T 2xxj_A           61 -------SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPV  119 (310)
T ss_dssp             -------CGGGGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred             -------CHHHhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCch
Confidence                   034578999999999877654431       15666555543   32 22344456775

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=90.39  E-value=0.79  Score=42.63  Aligned_cols=39  Identities=10%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA  152 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~  152 (279)
                      ....+|.|||+||.|+.|+..|...+..  ++..+|.|.-.
T Consensus        34 L~~~~VlivG~GGlG~~ia~~La~~Gvg--~itlvD~d~V~   72 (346)
T 1y8q_A           34 LRASRVLLVGLKGLGAEIAKNLILAGVK--GLTMLDHEQVT   72 (346)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBCC
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEECCCcc
Confidence            4567999999999999999999987542  45567776533

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=90.34  E-value=1.7  Score=39.92  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=28.0

Q ss_pred             ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      |||.||| .|+.|..++-.|..+..-..+...+|.+.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~   37 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC
Confidence            7999999 99999999988876522235777788764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.13  E-value=0.5  Score=42.81  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ..+||.|||.|..|..++..|.+.   +.+.+++|.+.+.++.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~---G~~V~~~dr~~~~~~~   69 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEA---GYALQVWNRTPARAAS   69 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhC---CCeEEEEcCCHHHHHH
Confidence            457999999999999999999885   4577788888766543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=89.89  E-value=1.5  Score=38.49  Aligned_cols=102  Identities=15%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      ...|+|+|.|. |..|..++.+|.+.   +.+.++++-+...+....- ..-.+..+           |.        .+
T Consensus        11 ~~~M~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~l~~-~~~~~~~~-----------Dl--------~d   67 (342)
T 2x4g_A           11 GAHVKYAVLGATGLLGHHAARAIRAA---GHDLVLIHRPSSQIQRLAY-LEPECRVA-----------EM--------LD   67 (342)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEECTTSCGGGGGG-GCCEEEEC-----------CT--------TC
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEecChHhhhhhcc-CCeEEEEe-----------cC--------CC
Confidence            34579999996 89999999999985   4677777654332221100 00111111           11        12


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCccc----------CHHHHHHHHHHHcCCcEEEE
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGT----------GAAPVIAGIAKSMGILTVGI  236 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGS----------G~aPvIaeiake~gi~tvaI  236 (279)
                      .+.+.++++++|.||-+++..+..-.          -++-.+++.+++.++..+..
T Consensus        68 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~  123 (342)
T 2x4g_A           68 HAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILY  123 (342)
T ss_dssp             HHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEE
T ss_pred             HHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            35677788899999998887542111          11335567777666444433

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=89.81  E-value=1.2  Score=40.82  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      +.+||.|||.|..|...+-.|...++ .-+.+.+|.|.+
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~~   43 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFKE   43 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCChH
Confidence            34799999999999999988877653 237788888754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=89.29  E-value=4.3  Score=35.13  Aligned_cols=98  Identities=13%  Similarity=0.128  Sum_probs=58.9

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc-----HHHHh---cCCCCCCCeEEcCcccccCCCCCCCchhhH
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD-----AQAMK---VSPVIPENRLQIGCELTRGLGAGGNPSVGM  184 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD-----~~~L~---~s~v~a~~ri~iG~~~t~G~GaG~np~~G~  184 (279)
                      .++|.|+|. |.-|..++++|.+.+   .+..++.-+     .+...   ... ...-.+..+           |.    
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------D~----   64 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEA-----------SL----   64 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECC-----------CS----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC---CcEEEEECCCcccchhHHHHHHHHH-hCCeEEEeC-----------CC----
Confidence            468999996 999999999999864   555565443     22111   000 001122221           11    


Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeecCCC-cccCHHHHHHHHHHHcC-CcEE
Q 044090          185 NAANESKVAIEEAISGADMIFVTAGMGGG-TGTGAAPVIAGIAKSMG-ILTV  234 (279)
Q Consensus       185 eaa~e~~e~I~~~Le~~D~vfIvAGLGGG-TGSG~aPvIaeiake~g-i~tv  234 (279)
                          .+.+.+.++++++|.||.+++.... .-.-..-.+++.+++.+ +..|
T Consensus        65 ----~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~  112 (313)
T 1qyd_A           65 ----DDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRF  112 (313)
T ss_dssp             ----SCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEE
T ss_pred             ----CCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceE
Confidence                1235677888899999988875432 12234566778888877 6544

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=88.85  E-value=0.42  Score=46.49  Aligned_cols=43  Identities=21%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             CCCceEEEEeeCcc--hHHHHHHHHHcC-CCcceEEEEeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGG--GSNAVNRMIESS-MTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGga--G~NIVd~l~~~~-~~~ve~iavNTD~~~L~~  155 (279)
                      +.++||.|||-|..  |..++..+.+.. +.+ +.+.+|.|.+.|+.
T Consensus         3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~   48 (450)
T 3fef_A            3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQK   48 (450)
T ss_dssp             CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHH
T ss_pred             CCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHH
Confidence            35689999999996  578988888754 346 88889999776643

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=88.70  E-value=2  Score=37.95  Aligned_cols=36  Identities=31%  Similarity=0.263  Sum_probs=27.7

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      ...|+|+|.|. |..|..++.+|.+.+. .++.++++.
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~~~v~~~~~   58 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYE-TYKIINFDA   58 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCT-TEEEEEEEC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCC-CcEEEEEec
Confidence            55789999998 8899999999998752 367677653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=88.67  E-value=1.6  Score=36.30  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=57.5

Q ss_pred             ce-EEEEee-CcchHHHHHHHH-HcCCCcceEEEEeCcHH-HHhcCC-CCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090          115 AK-IKVIGV-GGGGSNAVNRMI-ESSMTGVEFWIVNTDAQ-AMKVSP-VIPENRLQIGCELTRGLGAGGNPSVGMNAANE  189 (279)
Q Consensus       115 ~k-I~VIGI-GgaG~NIVd~l~-~~~~~~ve~iavNTD~~-~L~~s~-v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e  189 (279)
                      || |.|.|- |+.|..++.+|. +   .+.+.+++.-+.. .+.... ....-.+..+ +.                  .
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~------------------~   62 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTY---TDMHITLYGRQLKTRIPPEIIDHERVTVIEG-SF------------------Q   62 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHH---CCCEEEEEESSHHHHSCHHHHTSTTEEEEEC-CT------------------T
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhc---CCceEEEEecCccccchhhccCCCceEEEEC-CC------------------C
Confidence            35 999994 889999999999 5   4567777777766 543210 0011111111 11                  1


Q ss_pred             HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090          190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI  236 (279)
Q Consensus       190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI  236 (279)
                      +.+.++++++++|.||..+|..   .-- +-.+++.+++.+...|..
T Consensus        63 d~~~~~~~~~~~d~vv~~ag~~---n~~-~~~~~~~~~~~~~~~iv~  105 (221)
T 3r6d_A           63 NPGXLEQAVTNAEVVFVGAMES---GSD-MASIVKALSRXNIRRVIG  105 (221)
T ss_dssp             CHHHHHHHHTTCSEEEESCCCC---HHH-HHHHHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHHcCCCEEEEcCCCC---Chh-HHHHHHHHHhcCCCeEEE
Confidence            2456777888999998877532   111 455566677766544433

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=88.45  E-value=3.4  Score=34.77  Aligned_cols=101  Identities=12%  Similarity=0.190  Sum_probs=59.0

Q ss_pred             CCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          113 NEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       113 ~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ..++|+|.| -|+.|..++.+|.+.+  ..+.+++.-+...+....   ..++.+=.         .|.        .+.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G--~~~V~~~~R~~~~~~~~~---~~~~~~~~---------~Dl--------~d~   79 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQ--TIKQTLFARQPAKIHKPY---PTNSQIIM---------GDV--------LNH   79 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCT--TEEEEEEESSGGGSCSSC---CTTEEEEE---------CCT--------TCH
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCC--CceEEEEEcChhhhcccc---cCCcEEEE---------ecC--------CCH
Confidence            346799999 5899999999998753  167777777766554321   11221100         011        124


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCccc-CHHHHHHHHHHHcCCcEEEEEc
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGT-GAAPVIAGIAKSMGILTVGIAT  238 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGS-G~aPvIaeiake~gi~tvaIvt  238 (279)
                      +.++++++++|.||..++.   ... -.+-.+++.+++.+...|..+.
T Consensus        80 ~~~~~~~~~~D~vv~~a~~---~~~~~~~~~~~~~~~~~~~~~iV~iS  124 (236)
T 3qvo_A           80 AALKQAMQGQDIVYANLTG---EDLDIQANSVIAAMKACDVKRLIFVL  124 (236)
T ss_dssp             HHHHHHHTTCSEEEEECCS---TTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             HHHHHHhcCCCEEEEcCCC---CchhHHHHHHHHHHHHcCCCEEEEEe
Confidence            5677888899998876542   211 1234456667776654444333

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=88.34  E-value=1.8  Score=36.99  Aligned_cols=102  Identities=11%  Similarity=0.225  Sum_probs=54.1

Q ss_pred             eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      +|.|.|. |..|..++.+|.+. ..+.+.++++-+...+.... ...-.+..+           |.        .+.+.+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~-~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~-----------D~--------~d~~~~   59 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKT-VPASQIVAIVRNPAKAQALA-AQGITVRQA-----------DY--------GDEAAL   59 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTT-SCGGGEEEEESCTTTCHHHH-HTTCEEEEC-----------CT--------TCHHHH
T ss_pred             CEEEEcCCchHHHHHHHHHHhh-CCCceEEEEEcChHhhhhhh-cCCCeEEEc-----------CC--------CCHHHH
Confidence            5889997 88999999999874 12567777664432211100 001122221           11        123456


Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEc
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIAT  238 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvt  238 (279)
                      .++++++|.||-+++..-..-.-.+-.+++.+++.++..+..+.
T Consensus        60 ~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~S  103 (286)
T 2zcu_A           60 TSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTS  103 (286)
T ss_dssp             HHHTTTCSEEEECC--------CHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            77788889888877653221123455566777766654444333

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=88.16  E-value=0.38  Score=44.20  Aligned_cols=45  Identities=16%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +......++.|||+||.|+.++..|...+..  ++..+|-|.-++.+
T Consensus        31 q~kL~~~~VlVvGaGGlGs~va~~La~aGVG--~i~lvD~D~Ve~sN   75 (292)
T 3h8v_A           31 YEKIRTFAVAIVGVGGVGSVTAEMLTRCGIG--KLLLFDYDKVELAN   75 (292)
T ss_dssp             -CGGGGCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC----
T ss_pred             HHHHhCCeEEEECcCHHHHHHHHHHHHcCCC--EEEEECCCccChhh
Confidence            3445677999999999999999999987642  45567887655544

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=87.95  E-value=3.3  Score=35.75  Aligned_cols=95  Identities=15%  Similarity=0.241  Sum_probs=55.8

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc------HHHH---hcCCCCCCCeEEcCcccccCCCCCCCchhh
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD------AQAM---KVSPVIPENRLQIGCELTRGLGAGGNPSVG  183 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD------~~~L---~~s~v~a~~ri~iG~~~t~G~GaG~np~~G  183 (279)
                      .++|.|+|. |.-|..++++|.+.+   .+.+++.-+      ....   .... ...-.+..+           |.   
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~-----------D~---   65 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHG-----------SI---   65 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECC-----------CT---
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC---CCEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEe-----------cc---
Confidence            468999997 999999999999864   455555332      1111   1000 001122221           11   


Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcC-CcEE
Q 044090          184 MNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTV  234 (279)
Q Consensus       184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~g-i~tv  234 (279)
                           .+.+.+.++++++|.||.+++...   ....-.+++.+++.+ +..|
T Consensus        66 -----~d~~~l~~~~~~~d~vi~~a~~~~---~~~~~~l~~aa~~~g~v~~~  109 (308)
T 1qyc_A           66 -----DDHASLVEAVKNVDVVISTVGSLQ---IESQVNIIKAIKEVGTVKRF  109 (308)
T ss_dssp             -----TCHHHHHHHHHTCSEEEECCCGGG---SGGGHHHHHHHHHHCCCSEE
T ss_pred             -----CCHHHHHHHHcCCCEEEECCcchh---hhhHHHHHHHHHhcCCCceE
Confidence                 123456777889999988876543   223456678887776 5554

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=87.60  E-value=0.65  Score=42.01  Aligned_cols=37  Identities=27%  Similarity=0.463  Sum_probs=25.9

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      .||.|||+|-.|..++.+|.+.   +.+.++.|-+.+..+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~---G~~V~v~dr~~~~~~   42 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEA---GYELVVWNRTASKAE   42 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEEEC-------C
T ss_pred             CcEEEEecHHHHHHHHHHHHHC---CCeEEEEeCCHHHHH
Confidence            3899999999999999999985   567777787665544

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=87.51  E-value=3.3  Score=35.74  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=56.7

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH-------HHHhcC-CC-CCCCeEEcCcccccCCCCCCCchhh
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA-------QAMKVS-PV-IPENRLQIGCELTRGLGAGGNPSVG  183 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~-------~~L~~s-~v-~a~~ri~iG~~~t~G~GaG~np~~G  183 (279)
                      .++|.|+|. |+-|..++.+|.+.+   .+.+++.-+.       ..+... .. ...-.+..+           |.   
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~-----------D~---   64 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELIDNYQSLGVILLEG-----------DI---   64 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHT---CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEEC-----------CT---
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCC---CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEe-----------CC---
Confidence            368999997 999999999999864   4555554332       211100 00 001122211           11   


Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcC-CcEE
Q 044090          184 MNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTV  234 (279)
Q Consensus       184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~g-i~tv  234 (279)
                           .+.+.+.++++++|.||.+++...   .-..-.+++.+++.+ +..|
T Consensus        65 -----~d~~~l~~~~~~~d~vi~~a~~~~---~~~~~~l~~aa~~~g~v~~~  108 (307)
T 2gas_A           65 -----NDHETLVKAIKQVDIVICAAGRLL---IEDQVKIIKAIKEAGNVKKF  108 (307)
T ss_dssp             -----TCHHHHHHHHTTCSEEEECSSSSC---GGGHHHHHHHHHHHCCCSEE
T ss_pred             -----CCHHHHHHHHhCCCEEEECCcccc---cccHHHHHHHHHhcCCceEE
Confidence                 123567788889999988876543   333456678888776 5544

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=87.30  E-value=1.6  Score=39.79  Aligned_cols=43  Identities=19%  Similarity=0.148  Sum_probs=31.0

Q ss_pred             CCCCCceEEEEeeCcchH-HHHHHHHHcCCCcceEEEE-eCcHHHHh
Q 044090          110 NNNNEAKIKVIGVGGGGS-NAVNRMIESSMTGVEFWIV-NTDAQAMK  154 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~-NIVd~l~~~~~~~ve~iav-NTD~~~L~  154 (279)
                      ..+.++||.|||+|..|. ..+..+.+.  ++++.++| |.|.+..+
T Consensus        23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~   67 (350)
T 3rc1_A           23 ANANPIRVGVIGCADIAWRRALPALEAE--PLTEVTAIASRRWDRAK   67 (350)
T ss_dssp             ---CCEEEEEESCCHHHHHTHHHHHHHC--TTEEEEEEEESSHHHHH
T ss_pred             CCCCceEEEEEcCcHHHHHHHHHHHHhC--CCeEEEEEEcCCHHHHH
Confidence            446678999999999998 688888764  47887654 77766544

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=87.12  E-value=1.5  Score=37.52  Aligned_cols=102  Identities=11%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA  193 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~  193 (279)
                      ++|.|.|. |..|..++.+|.+.. .+.+.++++-+...+.... ...-.+..+           |.        .+.+.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~-~g~~V~~~~r~~~~~~~l~-~~~~~~~~~-----------D~--------~d~~~   59 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKV-PASQIIAIVRNVEKASTLA-DQGVEVRHG-----------DY--------NQPES   59 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTS-CGGGEEEEESCTTTTHHHH-HTTCEEEEC-----------CT--------TCHHH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhC-CCCeEEEEEcCHHHHhHHh-hcCCeEEEe-----------cc--------CCHHH
Confidence            47899997 899999999998741 2567667654432221100 001122221           11        12345


Q ss_pred             HHHHhcCCCEEEEEeecCCCc--ccCHHHHHHHHHHHcCCcEEEEE
Q 044090          194 IEEAISGADMIFVTAGMGGGT--GTGAAPVIAGIAKSMGILTVGIA  237 (279)
Q Consensus       194 I~~~Le~~D~vfIvAGLGGGT--GSG~aPvIaeiake~gi~tvaIv  237 (279)
                      +.++++++|.||-+++..-..  -.-.+-.+++.+++.++..+..+
T Consensus        60 l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~  105 (287)
T 2jl1_A           60 LQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYT  105 (287)
T ss_dssp             HHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            667778888888777653110  01123445566676665444433

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=86.88  E-value=0.94  Score=43.25  Aligned_cols=94  Identities=21%  Similarity=0.300  Sum_probs=54.5

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCc-hhhHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNP-SVGMNAANE  189 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np-~~G~eaa~e  189 (279)
                      ..+.|+.|||.|.+|..++..+...   +++.+++|.+...++...-. -.++ .+..   .+.|.++.. +..++....
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~l---Ga~V~v~D~~~~~l~~~~~l-Ga~~~~l~~---~~~~~~gya~~~~~~~~~~  254 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRL---GAKTTGYDVRPEVAEQVRSV-GAQWLDLGI---DAAGEGGYARELSEAERAQ  254 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHH---TCEEEEECSSGGGHHHHHHT-TCEECCCC----------------CHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHc-CCeEEeccc---cccccccchhhhhHHHHhh
Confidence            3567999999999999999988875   45788888876544431100 0011 0100   112222221 122333444


Q ss_pred             HHHHHHHHhcCCCEEEEEeecCC
Q 044090          190 SKVAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       190 ~~e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      ..+.+.+.+.++|.||-++..-|
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~iPg  277 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTALVPG  277 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTT
T ss_pred             hHHHHHHHHhcCCEEEECCCCCC
Confidence            56778899999999987765554

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=86.64  E-value=4.2  Score=35.46  Aligned_cols=95  Identities=16%  Similarity=0.087  Sum_probs=56.8

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH------HH---HhcCCCCCCCeEEcCcccccCCCCCCCchhh
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA------QA---MKVSPVIPENRLQIGCELTRGLGAGGNPSVG  183 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~------~~---L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G  183 (279)
                      .++|.|+|. |+-|..++.+|.+.+   .+..++.-+.      ..   |.... ...-.+..+           |.   
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~l~~~~-~~~v~~v~~-----------D~---   65 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS---HPTFIYARPLTPDSTPSSVQLREEFR-SMGVTIIEG-----------EM---   65 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECCCCTTCCHHHHHHHHHHH-HTTCEEEEC-----------CT---
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC---CcEEEEECCcccccChHHHHHHHHhh-cCCcEEEEe-----------cC---
Confidence            468999996 999999999999864   4555554332      11   11000 001122211           11   


Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcC-CcEE
Q 044090          184 MNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTV  234 (279)
Q Consensus       184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~g-i~tv  234 (279)
                           .+.+.+.++++++|.||.+++...   .-..-.+++.+++.+ +..|
T Consensus        66 -----~d~~~l~~a~~~~d~vi~~a~~~~---~~~~~~l~~aa~~~g~v~~~  109 (321)
T 3c1o_A           66 -----EEHEKMVSVLKQVDIVISALPFPM---ISSQIHIINAIKAAGNIKRF  109 (321)
T ss_dssp             -----TCHHHHHHHHTTCSEEEECCCGGG---SGGGHHHHHHHHHHCCCCEE
T ss_pred             -----CCHHHHHHHHcCCCEEEECCCccc---hhhHHHHHHHHHHhCCccEE
Confidence                 123567888899999998877543   233456778787776 5544

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=86.62  E-value=0.35  Score=45.14  Aligned_cols=39  Identities=13%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .+||.|||+|-.|..++..|.+.   +.+.+++|.+.+.++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~---G~~V~~~dr~~~~~~~   46 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAA---NHSVFGYNRSRSGAKS   46 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT---TCCEEEECSCHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC---CCEEEEEeCCHHHHHH
Confidence            46899999999999999999886   4677888888776653

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=86.44  E-value=1.5  Score=38.93  Aligned_cols=96  Identities=17%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             CCCceEEEEeeCcchHH-HHHHHHHcCCCcceEEE-EeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSN-AVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE  189 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~N-IVd~l~~~~~~~ve~ia-vNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e  189 (279)
                      +..+||.|||+|..|.. .+..+.+  ..+++.++ +|.|.+..+...    .+  .|        .-.           
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~--~~~~~l~av~d~~~~~~~~~a----~~--~~--------~~~-----------   56 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTK--SERFEFVGAFTPNKVKREKIC----SD--YR--------IMP-----------   56 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTS--CSSSEEEEEECSCHHHHHHHH----HH--HT--------CCB-----------
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHh--CCCeEEEEEECCCHHHHHHHH----HH--cC--------CCC-----------
Confidence            55789999999999997 7776644  35788775 577776554310    00  01        000           


Q ss_pred             HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCC
Q 044090          190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCF  243 (279)
Q Consensus       190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~  243 (279)
                       .+.++++++++|+|+|+      |-+..-..++..+-+.|+.++  +-.|...
T Consensus        57 -~~~~~~ll~~~D~V~i~------tp~~~h~~~~~~al~~gk~vl--~EKP~~~  101 (308)
T 3uuw_A           57 -FDSIESLAKKCDCIFLH------SSTETHYEIIKILLNLGVHVY--VDKPLAS  101 (308)
T ss_dssp             -CSCHHHHHTTCSEEEEC------CCGGGHHHHHHHHHHTTCEEE--ECSSSSS
T ss_pred             -cCCHHHHHhcCCEEEEe------CCcHhHHHHHHHHHHCCCcEE--EcCCCCC
Confidence             11234455589999984      445555555555555677654  4457643

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=86.38  E-value=4.3  Score=35.35  Aligned_cols=97  Identities=14%  Similarity=0.141  Sum_probs=59.0

Q ss_pred             CceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090          114 EAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       114 ~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      .++|+|.| -|..|..++.+|.+.   +.+.++++-+.....   . +.-.+..+           |..         .+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~---~-~~~~~~~~-----------Dl~---------~~   54 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKND---GNTPIILTRSIGNKA---I-NDYEYRVS-----------DYT---------LE   54 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCCC---------CCEEEEC-----------CCC---------HH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC---CCEEEEEeCCCCccc---C-CceEEEEc-----------ccc---------HH
Confidence            36899999 589999999999986   456666654411111   1 01122211           111         25


Q ss_pred             HHHHHhcCCCEEEEEeecCCCc--------ccCHHHHHHHHHHHcCCcEEEEE
Q 044090          193 AIEEAISGADMIFVTAGMGGGT--------GTGAAPVIAGIAKSMGILTVGIA  237 (279)
Q Consensus       193 ~I~~~Le~~D~vfIvAGLGGGT--------GSG~aPvIaeiake~gi~tvaIv  237 (279)
                      .+.++++++|.||-+++..+..        -.-++-.+++.+++.++..+..+
T Consensus        55 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~  107 (311)
T 3m2p_A           55 DLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYA  107 (311)
T ss_dssp             HHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            5677888999999988876543        11224566788888776544433

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=86.37  E-value=5.1  Score=35.94  Aligned_cols=38  Identities=8%  Similarity=0.068  Sum_probs=29.0

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDAQA  152 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NTD~~~  152 (279)
                      ..+||.|||+|..|...+..+.+.  .+++.++| |.|.+.
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~--~~~~~~av~d~~~~~   42 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLA--GNGEVVAVSSRTLES   42 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHH--CSEEEEEEECSCSST
T ss_pred             CceEEEEEechHHHHHHHHHHHhC--CCcEEEEEEcCCHHH
Confidence            468999999999999999988765  46777765 555443

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=86.36  E-value=1.5  Score=39.39  Aligned_cols=39  Identities=18%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEe--CcHHHHhc
Q 044090          115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVN--TDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavN--TD~~~L~~  155 (279)
                      |||+|.| -|..|..++.+|.+.+.  ++.+++|  +|.+.|..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~--~~v~~~d~~~d~~~l~~   42 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTD--HHIFEVHRQTKEEELES   42 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCC--CEEEECCTTCCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--CEEEEECCCCCHHHHHH
Confidence            6899999 68899999999998642  3666665  46666654

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=86.27  E-value=5.3  Score=36.46  Aligned_cols=46  Identities=22%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             CCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHh
Q 044090          108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMK  154 (279)
Q Consensus       108 ~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~  154 (279)
                      ....+.++||.|||+|..|...+..+.+. ..+++.++ +|.|.+..+
T Consensus        17 ~~~~m~~~rvgiIG~G~~g~~~~~~l~~~-~~~~~lvav~d~~~~~~~   63 (357)
T 3ec7_A           17 LYFQGMTLKAGIVGIGMIGSDHLRRLANT-VSGVEVVAVCDIVAGRAQ   63 (357)
T ss_dssp             -----CCEEEEEECCSHHHHHHHHHHHHT-CTTEEEEEEECSSTTHHH
T ss_pred             cccCCCeeeEEEECCcHHHHHHHHHHHhh-CCCcEEEEEEeCCHHHHH
Confidence            33446778999999999999999888732 35788775 466655443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.22  E-value=1.8  Score=35.59  Aligned_cols=38  Identities=34%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      |||+|.|. |+.|..++.+|.+.   +.+.+++.-+...+..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~---g~~V~~~~R~~~~~~~   39 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR---GHEVLAVVRDPQKAAD   39 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC---CCEEEEEEeccccccc
Confidence            68999998 99999999999985   5677777766665543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=86.01  E-value=7.8  Score=34.41  Aligned_cols=42  Identities=17%  Similarity=0.419  Sum_probs=32.6

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEE-EEeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFW-IVNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~i-avNTD~~~L~~  155 (279)
                      ..++||.|||+|..|..++..|.+.  .+++.+ ++|.|.+.++.
T Consensus         8 ~~~~~igiIG~G~~g~~~~~~l~~~--~~~~~v~v~d~~~~~~~~   50 (315)
T 3c1a_A            8 NSPVRLALIGAGRWGKNYIRTIAGL--PGAALVRLASSNPDNLAL   50 (315)
T ss_dssp             -CCEEEEEEECTTTTTTHHHHHHHC--TTEEEEEEEESCHHHHTT
T ss_pred             CCcceEEEECCcHHHHHHHHHHHhC--CCcEEEEEEeCCHHHHHH
Confidence            4568999999999999999988774  467765 46888777654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=85.66  E-value=0.87  Score=38.79  Aligned_cols=40  Identities=13%  Similarity=0.304  Sum_probs=30.4

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      ...+||.|||.|..|..++..|.+.+   .+.+++|.+.+.++
T Consensus        26 ~~~~~I~iiG~G~~G~~la~~l~~~g---~~V~~~~r~~~~~~   65 (215)
T 2vns_A           26 DEAPKVGILGSGDFARSLATRLVGSG---FKVVVGSRNPKRTA   65 (215)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTT---CCEEEEESSHHHHH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCCHHHHH
Confidence            34689999999999999999998854   46677887766554

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=85.37  E-value=4.9  Score=36.22  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcc-eEEEEeCcHHHHhcC--CCC-CCCeEEcCcccccCCCCCCCchhhHHH
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGV-EFWIVNTDAQAMKVS--PVI-PENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~v-e~iavNTD~~~L~~s--~v~-a~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      +..++|+|.|. |+.|..++.+|.+.  .+. +.++++.+...+...  ... ..-++..+. +                
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~--~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~D-l----------------   79 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDT--TNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGD-V----------------   79 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHH--CCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECC-T----------------
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhh--CCCCEEEEEECChhhHHHHHHHhcCCCEEEEECC-C----------------
Confidence            56789999995 88999999999986  144 667777765543221  000 011222221 1                


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcccC------------HHHHHHHHHHHcCCcEEEEEc
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTGTG------------AAPVIAGIAKSMGILTVGIAT  238 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG------------~aPvIaeiake~gi~tvaIvt  238 (279)
                        .+.+.+.++++++|.||-+|++.....+-            ++-.+++.+++.++..+..++
T Consensus        80 --~d~~~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~S  141 (344)
T 2gn4_A           80 --RDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALS  141 (344)
T ss_dssp             --TCHHHHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             --CCHHHHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence              12355777788999999988876421110            122456667777765555444

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=85.34  E-value=2.4  Score=40.24  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      ++.+.||.|||+|+.|-.++..|.+.   |.+....|.
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~---G~~V~~~D~   40 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKL---GAIVTVNDG   40 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHT---TCEEEEEES
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhC---CCEEEEEeC
Confidence            35677999999999999998888774   677777776

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=85.32  E-value=1.7  Score=40.61  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM  153 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L  153 (279)
                      ..+||.|||.|..|..++-.+...++- -+...+|.+.+.+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~-~ev~L~Di~~~~~   59 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLA-DEVALVDVMEDKL   59 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCC-SEEEEECSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC-CeEEEEECCHHHH
Confidence            568999999999999999998876542 2677788765433

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=85.21  E-value=4.7  Score=35.18  Aligned_cols=94  Identities=14%  Similarity=0.121  Sum_probs=56.4

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHH----HHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQ----AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE  189 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~----~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e  189 (279)
                      .+|+|+|. |+-|..++.+|.+.+   .+.+++.-+..    .+.... ...-.+..+           |.        .
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~l~-~~~v~~v~~-----------Dl--------~   68 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLG---HPTYVFTRPNSSKTTLLDEFQ-SLGAIIVKG-----------EL--------D   68 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECTTCSCHHHHHHHH-HTTCEEEEC-----------CT--------T
T ss_pred             CeEEEECCCchHHHHHHHHHHHCC---CcEEEEECCCCchhhHHHHhh-cCCCEEEEe-----------cC--------C
Confidence            38999996 999999999999864   45555543321    111000 001122221           11        1


Q ss_pred             HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcC-CcEE
Q 044090          190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTV  234 (279)
Q Consensus       190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~g-i~tv  234 (279)
                      +.+.+.++++++|.||.+++...   .-..-.+++.+++.+ +..|
T Consensus        69 d~~~l~~a~~~~d~vi~~a~~~~---~~~~~~l~~aa~~~g~v~~~  111 (318)
T 2r6j_A           69 EHEKLVELMKKVDVVISALAFPQ---ILDQFKILEAIKVAGNIKRF  111 (318)
T ss_dssp             CHHHHHHHHTTCSEEEECCCGGG---STTHHHHHHHHHHHCCCCEE
T ss_pred             CHHHHHHHHcCCCEEEECCchhh---hHHHHHHHHHHHhcCCCCEE
Confidence            23567888899999988876532   334566778888776 5544

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=85.09  E-value=1.6  Score=39.66  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=28.4

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC--cHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT--DAQ  151 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT--D~~  151 (279)
                      |||.|+|. |..|..++..|...+. ..+...+|.  +.+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~~   39 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHSIN   39 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGGHH
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCC-CCEEEEEcCCCchh
Confidence            69999999 9999999999887543 356777887  643

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=84.99  E-value=3.3  Score=39.71  Aligned_cols=39  Identities=13%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .++|.|+|.|+.|..++..|.+.   +.+..++|-+.+.+..
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~---G~~V~v~~R~~~~a~~   41 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDS---GIKVTVACRTLESAKK   41 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT---TCEEEEEESSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---cCEEEEEECCHHHHHH
Confidence            46899999999999999999864   4677777877766554

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=84.97  E-value=1.1  Score=42.27  Aligned_cols=42  Identities=14%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ..+.|+.|||+||.|+.++..|...+..  ++..+|-|.-++.+
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg--~ItlvD~D~Ve~SN   73 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVR--KITFVDNGTVSYSN   73 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECCCBCCTTS
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEecCCEecccc
Confidence            4567999999999999999999996542  34557877655443

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=84.82  E-value=3.9  Score=37.05  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=25.4

Q ss_pred             CceEEEEeeCcchHH-HHHHHHHcCCCcceEEEEeCc
Q 044090          114 EAKIKVIGVGGGGSN-AVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       114 ~~kI~VIGIGgaG~N-IVd~l~~~~~~~ve~iavNTD  149 (279)
                      .+||.|||+|+.|-. ++..|.+   .|.+....|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~---~G~~V~~~D~~   37 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKE---AGFEVSGCDAK   37 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHh---CCCEEEEEcCC
Confidence            468999999999997 5555555   46787788863

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=84.81  E-value=2.6  Score=37.94  Aligned_cols=40  Identities=10%  Similarity=0.083  Sum_probs=31.1

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcHHHHh
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDAQAMK  154 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NTD~~~L~  154 (279)
                      ..+||.|||+|..|...+..+.+.  .+++.+++ |.|.+...
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~   44 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRES--AQAEVRGIASRRLENAQ   44 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHS--SSEEEEEEBCSSSHHHH
T ss_pred             CeEEEEEECchHHHHHHHHHHHhC--CCcEEEEEEeCCHHHHH
Confidence            468999999999999999998775  56787764 66655443

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=84.74  E-value=1.9  Score=41.06  Aligned_cols=76  Identities=13%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             CCceEEEEe-eCcchHHHHHHHHHcCCCc----ceEEEEeCcH---------HHHhcCCCCCCCeEEcCcccccCCCCCC
Q 044090          113 NEAKIKVIG-VGGGGSNAVNRMIESSMTG----VEFWIVNTDA---------QAMKVSPVIPENRLQIGCELTRGLGAGG  178 (279)
Q Consensus       113 ~~~kI~VIG-IGgaG~NIVd~l~~~~~~~----ve~iavNTD~---------~~L~~s~v~a~~ri~iG~~~t~G~GaG~  178 (279)
                      ..+||.||| .|+.|..++-.|...++-+    +...-+|.|.         .+|.....+--..+.++..         
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~---------  101 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGID---------  101 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESC---------
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecC---------
Confidence            567999999 8999999999988876532    3344456543         2333322111122333210         


Q ss_pred             CchhhHHHHHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090          179 NPSVGMNAANESKVAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       179 np~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGG  212 (279)
                                     -.+.++++|.|+|++|.-=
T Consensus       102 ---------------~y~~~~daDvVVitag~pr  120 (375)
T 7mdh_A          102 ---------------PYEVFEDVDWALLIGAKPR  120 (375)
T ss_dssp             ---------------HHHHTTTCSEEEECCCCCC
T ss_pred             ---------------CHHHhCCCCEEEEcCCCCC
Confidence                           2467899999999988753

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=84.64  E-value=3.6  Score=40.00  Aligned_cols=36  Identities=11%  Similarity=0.163  Sum_probs=25.9

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      +...+|.|||+||.|-..+-+++..  .|.+....|..
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~--~G~~V~~sD~~   52 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARA--LGHTVTGSDAN   52 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHh--CCCEEEEECCC
Confidence            4567999999999999865555543  46787777763

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=84.60  E-value=0.81  Score=43.88  Aligned_cols=75  Identities=21%  Similarity=0.283  Sum_probs=45.8

Q ss_pred             CceEEEEeeCcchHH-HHHHHHH--cCCCcceEEEEeCcHHHHhcCC------CCCCCeEEcCcccccCCCCCCCchhhH
Q 044090          114 EAKIKVIGVGGGGSN-AVNRMIE--SSMTGVEFWIVNTDAQAMKVSP------VIPENRLQIGCELTRGLGAGGNPSVGM  184 (279)
Q Consensus       114 ~~kI~VIGIGgaG~N-IVd~l~~--~~~~~ve~iavNTD~~~L~~s~------v~a~~ri~iG~~~t~G~GaG~np~~G~  184 (279)
                      .+||.|||.|..=.. ++..|+.  .++..-+.+.+|.|.+.++...      ....-++...                 
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t-----------------   64 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLIS-----------------   64 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEEC-----------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEe-----------------
Confidence            479999998885222 2345566  4455678899999876544210      0000111110                 


Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090          185 NAANESKVAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       185 eaa~e~~e~I~~~Le~~D~vfIvAGLGG  212 (279)
                             ...++++++||.|+++++.|+
T Consensus        65 -------~d~~~al~~AD~Viitagvg~   85 (417)
T 1up7_A           65 -------DTFEGAVVDAKYVIFQFRPGG   85 (417)
T ss_dssp             -------SSHHHHHTTCSEEEECCCTTH
T ss_pred             -------CCHHHHhCCCCEEEEcCCCCC
Confidence                   123578899999999998765

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=84.38  E-value=1.5  Score=42.33  Aligned_cols=41  Identities=22%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .+.+|.|||+||.|+.++..|...+..  ++..+|-|.-++.+
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~aGvg--~i~ivD~D~Ve~sN   79 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLALSGFR--QIHVIDMDTIDVSN   79 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHHTTCC--CEEEEECCBCCGGG
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHcCCC--EEEEEcCCEechhc
Confidence            467999999999999999999987653  45567877655544

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=84.35  E-value=2.4  Score=37.46  Aligned_cols=104  Identities=16%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc----HHHHhcCC--CC----CCCeEEcCcccccCCCCCCCc
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD----AQAMKVSP--VI----PENRLQIGCELTRGLGAGGNP  180 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD----~~~L~~s~--v~----a~~ri~iG~~~t~G~GaG~np  180 (279)
                      +..++|+|.|. |..|..++.+|.+.   +.+.++++-+    ...+....  ..    ..-.+..+. +          
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l----------   88 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKL---NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGD-I----------   88 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECC-T----------
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEcc-C----------
Confidence            45689999995 88999999999985   4566666531    22221100  00    001112111 1          


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCCccc------------CHHHHHHHHHHHcCCcEEEEE
Q 044090          181 SVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGT------------GAAPVIAGIAKSMGILTVGIA  237 (279)
Q Consensus       181 ~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGS------------G~aPvIaeiake~gi~tvaIv  237 (279)
                              .+.+.+.++++++|.||-+|+...-..+            .++-.+++.+++.++..|..+
T Consensus        89 --------~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~  149 (351)
T 3ruf_A           89 --------RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYA  149 (351)
T ss_dssp             --------TCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEE
T ss_pred             --------CCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence                    1235677888899999998876432111            112336777777775444433

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=83.80  E-value=3.3  Score=38.34  Aligned_cols=36  Identities=11%  Similarity=0.178  Sum_probs=28.0

Q ss_pred             CceEEEEe-eCcchHHHHHHHHHcCC----CcceEEEEeCc
Q 044090          114 EAKIKVIG-VGGGGSNAVNRMIESSM----TGVEFWIVNTD  149 (279)
Q Consensus       114 ~~kI~VIG-IGgaG~NIVd~l~~~~~----~~ve~iavNTD  149 (279)
                      .+||.|+| .|+.|..++-.|...++    ..++...+|.+
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~   43 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCC
Confidence            47999999 89999999999987654    12456777775

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3

Probab=83.43  E-value=9.4  Score=30.88  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=36.4

Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEech
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPND  272 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd  272 (279)
                      ...+..-|.+|++ +..|.|  --.-.+++.+|+.|+.+++|...|.               ..|.+.+|.+|.++.+
T Consensus       105 ~~~~~~~Dvvi~i-S~sG~t--~~~~~~~~~ak~~g~~vi~iT~~~~---------------s~L~~~ad~~l~~~~~  164 (188)
T 1tk9_A          105 EALGNEKDVLIGI-STSGKS--PNVLEALKKAKELNMLCLGLSGKGG---------------GMMNKLCDHNLVVPSD  164 (188)
T ss_dssp             HHHCCTTCEEEEE-CSSSCC--HHHHHHHHHHHHTTCEEEEEEEGGG---------------TTHHHHCSEEEEESCS
T ss_pred             HHhCCCCCEEEEE-eCCCCC--HHHHHHHHHHHHCCCEEEEEeCCCC---------------cchHHcCCEEEEeCCC
Confidence            3345555655554 555554  2233446778889999999865432               1245568887777643

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=83.27  E-value=1  Score=45.47  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=32.4

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ...+.|+.|||+||.|+.++..|...+..  ++..+|-|.-++.+
T Consensus       324 kL~~~kVLIVGaGGLGs~va~~La~aGVG--~ItLvD~D~Ve~SN  366 (598)
T 3vh1_A          324 IIKNTKVLLLGAGTLGCYVSRALIAWGVR--KITFVDNGTVSYSN  366 (598)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHTTTCC--EEEEECCSBCCTTS
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCcccccc
Confidence            34578999999999999999999986542  44567877554443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=83.25  E-value=3.7  Score=37.16  Aligned_cols=40  Identities=13%  Similarity=0.172  Sum_probs=30.6

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcHHHHh
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDAQAMK  154 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NTD~~~L~  154 (279)
                      ..+||.|||+|..|...+..+.+.  ++++.+++ |.|.+...
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~--~~~~lvav~d~~~~~~~   44 (354)
T 3db2_A            4 NPVGVAAIGLGRWAYVMADAYTKS--EKLKLVTCYSRTEDKRE   44 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTC--SSEEEEEEECSSHHHHH
T ss_pred             CcceEEEEccCHHHHHHHHHHHhC--CCcEEEEEECCCHHHHH
Confidence            357999999999999988887543  57887654 77766554

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=82.91  E-value=4  Score=37.10  Aligned_cols=103  Identities=19%  Similarity=0.287  Sum_probs=57.9

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH-----HHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHH
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA-----QAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA  187 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~-----~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa  187 (279)
                      .++|.|.|. |+.|..++.+|.+.   +.+.+++.-+.     +.|...   ..-.+..+..+                 
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l-----------------   61 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAV---GHHVRAQVHSLKGLIAEELQAI---PNVTLFQGPLL-----------------   61 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHT---TCCEEEEESCSCSHHHHHHHTS---TTEEEEESCCT-----------------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC---CCEEEEEECCCChhhHHHHhhc---CCcEEEECCcc-----------------
Confidence            578999996 89999999999985   45666654332     223221   01112221101                 


Q ss_pred             HHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcC-CcEEEEEccC
Q 044090          188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTVGIATVP  240 (279)
Q Consensus       188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~g-i~tvaIvtlP  240 (279)
                       .+.+.+.++++++|.||..++.....-.-.+-.+++.+++.+ +..|..+...
T Consensus        62 -~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           62 -NNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             -TCHHHHHHHHTTCSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             -CCHHHHHHHHhcCCEEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence             123556778889999887654221110112355667777777 6555554443

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=82.74  E-value=6.4  Score=35.56  Aligned_cols=100  Identities=17%  Similarity=0.139  Sum_probs=57.2

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ..++|+|.|. |..|..++.+|.+.   +.+.++++-+........ ...-.+..+           |.        .+.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~-~~~v~~~~~-----------Dl--------~d~   84 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHE---GHYVIASDWKKNEHMTED-MFCDEFHLV-----------DL--------RVM   84 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESSCCSSSCGG-GTCSEEEEC-----------CT--------TSH
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHC---CCeEEEEECCCccchhhc-cCCceEEEC-----------CC--------CCH
Confidence            4578999998 88999999999985   457777654322111000 001111111           11        123


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCccc---C----------HHHHHHHHHHHcCCcEEE
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGT---G----------AAPVIAGIAKSMGILTVG  235 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGS---G----------~aPvIaeiake~gi~tva  235 (279)
                      +.+.++++++|.||-+|+.......   .          ++-.+++.+++.++..|.
T Consensus        85 ~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V  141 (379)
T 2c5a_A           85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFF  141 (379)
T ss_dssp             HHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            4566777899999988876543211   1          123456677776654433

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.69  E-value=13  Score=31.61  Aligned_cols=89  Identities=19%  Similarity=0.309  Sum_probs=56.5

Q ss_pred             CCCCceEEEEee-C-cchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC----CCCCCeEE-cCcccccCCCCCCCchhh
Q 044090          111 NNNEAKIKVIGV-G-GGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP----VIPENRLQ-IGCELTRGLGAGGNPSVG  183 (279)
Q Consensus       111 ~~~~~kI~VIGI-G-gaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~----v~a~~ri~-iG~~~t~G~GaG~np~~G  183 (279)
                      ...+.++.|.|- | |.|..++.+|.+.   +.+.++++-+.+.+....    .....++. +--++       .++   
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl-------~~~---   85 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLE---GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDV-------TST---   85 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCT-------TCH---
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHC---CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCC-------CCH---
Confidence            356778999998 8 8999999999985   567777777665544310    00011222 21111       122   


Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090          184 MNAANESKVAIEEAISGADMIFVTAGMGGG  213 (279)
Q Consensus       184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLGGG  213 (279)
                       +..++..+++.+.+...|.++-.||....
T Consensus        86 -~~v~~~~~~~~~~~g~id~li~~Ag~~~~  114 (266)
T 3o38_A           86 -EAVDALITQTVEKAGRLDVLVNNAGLGGQ  114 (266)
T ss_dssp             -HHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred             -HHHHHHHHHHHHHhCCCcEEEECCCcCCC
Confidence             33455566677777889999999987654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=82.55  E-value=1.2  Score=39.72  Aligned_cols=43  Identities=21%  Similarity=0.300  Sum_probs=33.4

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ..+||.|||.|..|..++..|.+.+....+.+++|-+.+.++.
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~   44 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDF   44 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHH
Confidence            3579999999999999999999876433467777876655543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=82.42  E-value=6.7  Score=35.03  Aligned_cols=42  Identities=17%  Similarity=0.420  Sum_probs=31.3

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHh
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMK  154 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~  154 (279)
                      .+.+||.|||+|..|...+..+.+. ..+++.++ +|.|.+.++
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~-~~~~~~vav~d~~~~~~~   48 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNK-IQGVKLVAACALDSNQLE   48 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHT-CSSEEEEEEECSCHHHHH
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhc-CCCcEEEEEecCCHHHHH
Confidence            3568999999999999999888622 24678665 577776654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=82.32  E-value=1.5  Score=38.46  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=33.0

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      +.+||.|||.|..|..++..|.+.+. +.+.+++|.+.+.++
T Consensus         5 ~~~~I~iIG~G~mG~~~a~~l~~~g~-~~~V~~~d~~~~~~~   45 (290)
T 3b1f_A            5 EEKTIYIAGLGLIGASLALGIKRDHP-HYKIVGYNRSDRSRD   45 (290)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSHHHHH
T ss_pred             ccceEEEEeeCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHH
Confidence            45799999999999999999988653 567788888766554

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=82.25  E-value=8.3  Score=34.83  Aligned_cols=43  Identities=16%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~~  155 (279)
                      ...+||.|||+|..|...+..+.+.. .+++.++ +|.|.+.++.
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~-~~~~lvav~d~~~~~~~~   54 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHA-DRAELIDVCDIDPAALKA   54 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTT-TTEEEEEEECSSHHHHHH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCC-CCeEEEEEEcCCHHHHHH
Confidence            35689999999999999998887753 4778765 5777665543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=82.12  E-value=3.4  Score=38.52  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=33.5

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      ...+.++.|||.|+.|..++..+...   +++.+++|.+.+.++
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~---Ga~V~~~d~~~~~l~  205 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGM---GATVTVLDINIDKLR  205 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEeCCHHHHH
Confidence            35678999999999999999988775   457888998877654

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=81.86  E-value=9.1  Score=33.94  Aligned_cols=37  Identities=14%  Similarity=0.193  Sum_probs=26.8

Q ss_pred             CCceEEEEeeCcchHH-HHHHHHHcCCCcceEEE-EeCcHH
Q 044090          113 NEAKIKVIGVGGGGSN-AVNRMIESSMTGVEFWI-VNTDAQ  151 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~N-IVd~l~~~~~~~ve~ia-vNTD~~  151 (279)
                      .++||.|||+|..|.. ++..+.+.  .+++.++ +|.|.+
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~--~~~~lvav~d~~~~   42 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAA--SDWTLQGAWSPTRA   42 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSC--SSEEEEEEECSSCT
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhC--CCeEEEEEECCCHH
Confidence            4689999999999987 88877543  4677764 565544

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=81.66  E-value=2.3  Score=39.36  Aligned_cols=101  Identities=15%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC-cHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH----
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE----  189 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT-D~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e----  189 (279)
                      +||.|+|.|..|..++..+.++  ++++..+++. +.............++..+          .+|.   +...+    
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~--p~~elvav~d~~~~~~~~~a~~~g~~~~~~----------~~~~---~~~~~~~v~   66 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQ--PDMKLVGVAKTSPNYEAFIAHRRGIRIYVP----------QQSI---KKFEESGIP   66 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC--TTEEEEEEECSSCSHHHHHHHHTTCCEECC----------GGGH---HHHHTTTCC
T ss_pred             eEEEEEecCHHHHHHHHHHHcC--CCCEEEEEEcCChHHHHHHHHhcCcceecC----------cCHH---HHhcccccc
Confidence            5899999999999999888654  5789888864 2111111000000011111          1121   11110    


Q ss_pred             HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090          190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI  236 (279)
Q Consensus       190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI  236 (279)
                      ..+.+.+.++++|.||++      ||.+.+...++...+.|..++.+
T Consensus        67 v~~~~e~l~~~vDvV~~a------Tp~~~s~~~a~~~~~aG~kvV~~  107 (340)
T 1b7g_O           67 VAGTVEDLIKTSDIVVDT------TPNGVGAQYKPIYLQLQRNAIFQ  107 (340)
T ss_dssp             CCCCHHHHHHHCSEEEEC------CSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             cccCHhHhhcCCCEEEEC------CCCchhHHHHHHHHHcCCeEEEe
Confidence            000123344679999885      78888877777777778776544

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=81.39  E-value=1.7  Score=39.03  Aligned_cols=42  Identities=12%  Similarity=0.244  Sum_probs=32.7

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      .....+||.|||.|..|..++..|.+.   +.+..++|.+.+.++
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~---G~~V~~~dr~~~~~~   58 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKN---GFKVTVWNRTLSKCD   58 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSSGGGGH
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHC---CCeEEEEeCCHHHHH
Confidence            345568999999999999999999986   457777787765543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=81.21  E-value=7  Score=34.46  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             CCCCCCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090          109 PNNNNEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNT  148 (279)
Q Consensus       109 ~~~~~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNT  148 (279)
                      ......++|+|.| -|+.|..++.+|.+.   +.+.++++-
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~---g~~V~~~~r   53 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLER---GDKVVGIDN   53 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEEC
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHC---CCEEEEEEC
Confidence            3445678999998 588999999999985   467666654

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=81.17  E-value=3.8  Score=36.94  Aligned_cols=39  Identities=15%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHh
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMK  154 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~  154 (279)
                      .+||.|||+|..|...+..+.+  ..+++.++ +|.|.+...
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~--~~~~~l~av~d~~~~~~~   41 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKM--IDDAILYAISDVREDRLR   41 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGG--STTEEEEEEECSCHHHHH
T ss_pred             eeEEEEEcCCHHHHHHHHHHHh--CCCcEEEEEECCCHHHHH
Confidence            3699999999999999988866  35788775 477766544

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=81.14  E-value=4.1  Score=36.75  Aligned_cols=81  Identities=21%  Similarity=0.265  Sum_probs=47.5

Q ss_pred             CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      ...++|+|.|. |..|..++.+|.+.+.  .+.++++-+...... ......++.+    ..     +|.        .+
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~-~l~~~~~v~~----~~-----~Dl--------~d   89 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGV--NQVHVVDNLLSAEKI-NVPDHPAVRF----SE-----TSI--------TD   89 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC--SEEEEECCCTTCCGG-GSCCCTTEEE----EC-----SCT--------TC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCC--ceEEEEECCCCCchh-hccCCCceEE----EE-----CCC--------CC
Confidence            45679999996 8899999999998531  576666543221100 0000112211    00     011        12


Q ss_pred             HHHHHHHhcCCCEEEEEeecCC
Q 044090          191 KVAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      .+.+.++++++|.||-+|+...
T Consensus        90 ~~~l~~~~~~~d~Vih~A~~~~  111 (377)
T 2q1s_A           90 DALLASLQDEYDYVFHLATYHG  111 (377)
T ss_dssp             HHHHHHCCSCCSEEEECCCCSC
T ss_pred             HHHHHHHhhCCCEEEECCCccC
Confidence            3457778889999998887654

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=81.11  E-value=2  Score=37.70  Aligned_cols=76  Identities=14%  Similarity=0.257  Sum_probs=45.9

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE--EcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL--QIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri--~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      |+|+|.|. |..|..++.+|.+.  .+.+.++++-+...+....  ...++  ..+ +++       ++          .
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~r~~~~~~~~~--~~~~~~~~~~-D~~-------~~----------~   58 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRFL--NHPHFHFVEG-DIS-------IH----------S   58 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHS--TTCEEEEEESCCGGGGGGT--TCTTEEEEEC-CTT-------TC----------S
T ss_pred             CeEEEECCCcHHHHHHHHHHHHh--CCCEEEEEeCCcchHHHhh--cCCCeEEEec-ccc-------Cc----------H
Confidence            58999998 88999999999986  2467777765544433211  11122  221 111       11          1


Q ss_pred             HHHHHHhcCCCEEEEEeecCC
Q 044090          192 VAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      +.++++++++|.||-+|+...
T Consensus        59 ~~~~~~~~~~d~vih~A~~~~   79 (345)
T 2bll_A           59 EWIEYHVKKCDVVLPLVAIAT   79 (345)
T ss_dssp             HHHHHHHHHCSEEEECBCCCC
T ss_pred             HHHHhhccCCCEEEEcccccC
Confidence            234455667899998887654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=81.04  E-value=9.7  Score=34.16  Aligned_cols=93  Identities=16%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      .+||.|||+|..|...+..|.+.  .+++.++ +|.|.+.+.....  .    +|..                    ...
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~--~----~g~~--------------------~~~   55 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAAN--PDLELVVIADPFIEGAQRLAE--A----NGAE--------------------AVA   55 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHH--T----TTCE--------------------EES
T ss_pred             ceEEEEECCcHHHHHHHHHHHhC--CCcEEEEEECCCHHHHHHHHH--H----cCCc--------------------eeC
Confidence            47999999999999999988774  5688775 5777665543110  0    0100                    012


Q ss_pred             HHHHHhc--CCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCC
Q 044090          193 AIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC  242 (279)
Q Consensus       193 ~I~~~Le--~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~  242 (279)
                      .++++++  ++|+|+|+      |-...-..++..+-+.|+.++.  -.|..
T Consensus        56 ~~~~~l~~~~~D~V~i~------tp~~~h~~~~~~al~~gk~v~~--EKP~~   99 (344)
T 3euw_A           56 SPDEVFARDDIDGIVIG------SPTSTHVDLITRAVERGIPALC--EKPID   99 (344)
T ss_dssp             SHHHHTTCSCCCEEEEC------SCGGGHHHHHHHHHHTTCCEEE--CSCSC
T ss_pred             CHHHHhcCCCCCEEEEe------CCchhhHHHHHHHHHcCCcEEE--ECCCC
Confidence            2455666  78888884      3444444444545556766543  35653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=80.82  E-value=2.1  Score=41.07  Aligned_cols=98  Identities=20%  Similarity=0.244  Sum_probs=53.4

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCc-ccccCCCCCCCch-hhHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGC-ELTRGLGAGGNPS-VGMNAAN  188 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~-~~t~G~GaG~np~-~G~eaa~  188 (279)
                      ....|+.|||.|.+|..++..+...   |++.+++|.+...++...-. ..++ .+.. +...+.|.++... ...+...
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~l---Ga~V~v~D~~~~~l~~~~~~-G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~  263 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRL---GAVVSATDVRPAAKEQVASL-GAKFIAVEDEEFKAAETAGGYAKEMSGEYQV  263 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSSTTHHHHHHHT-TCEECCCCC-----------------CHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHHHc-CCceeecccccccccccccchhhhcchhhhh
Confidence            3568999999999999999988775   56778888876544331100 0011 0100 0001112211110 1111122


Q ss_pred             HHHHHHHHHhcCCCEEEEEeecCCC
Q 044090          189 ESKVAIEEAISGADMIFVTAGMGGG  213 (279)
Q Consensus       189 e~~e~I~~~Le~~D~vfIvAGLGGG  213 (279)
                      ...+.+.+.+.++|.||-++..-|.
T Consensus       264 ~~~~~l~e~l~~aDVVI~tvlipg~  288 (405)
T 4dio_A          264 KQAALVAEHIAKQDIVITTALIPGR  288 (405)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCCSSS
T ss_pred             hhHhHHHHHhcCCCEEEECCcCCCC
Confidence            3456788999999999877666654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=80.67  E-value=3.9  Score=36.83  Aligned_cols=77  Identities=18%  Similarity=0.205  Sum_probs=48.2

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcc-eEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGV-EFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~v-e~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      ..+.++.|||.|++|..++..|.+.   ++ +..++|-+.+..+...    ..  ++..      .+ ...        .
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~---G~~~V~v~nR~~~ka~~la----~~--~~~~------~~-~~~--------~  194 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLST---AAERIDMANRTVEKAERLV----RE--GDER------RS-AYF--------S  194 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTT---TCSEEEEECSSHHHHHHHH----HH--SCSS------SC-CEE--------C
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHC---CCCEEEEEeCCHHHHHHHH----HH--hhhc------cC-cee--------e
Confidence            4567999999999999999999874   55 6677887765443210    00  1100      00 000        1


Q ss_pred             HHHHHHHhcCCCEEEEEeecCC
Q 044090          191 KVAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      .+.+.+.+.++|.|+-+.+.|-
T Consensus       195 ~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          195 LAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             HHHHHHTGGGCSEEEECSCTTC
T ss_pred             HHHHHhhhccCCEEEECCCCCC
Confidence            1345667889998888776654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=80.57  E-value=3.2  Score=38.42  Aligned_cols=40  Identities=20%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      ..+.++.|+|.|+.|..++..+...   +++.+++|.+.+.++
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~---Ga~V~~~d~~~~~~~  203 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGM---GAQVTILDVNHKRLQ  203 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEECCHHHHH
Confidence            4568999999999999999998875   567888888776654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=80.55  E-value=4.5  Score=39.13  Aligned_cols=96  Identities=18%  Similarity=0.140  Sum_probs=64.5

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      .++.|+|.|..|..++..|.+.   +.++++|+.|.+..+..     ..+..|.        +.+++        .++  
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~---g~~v~vid~d~~~~~~~-----~~~i~gD--------~t~~~--------~L~--  402 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK---PVPFILIDRQESPVCND-----HVVVYGD--------ATVGQ--------TLR--  402 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT---TCCEEEEESSCCSSCCS-----SCEEESC--------SSSST--------HHH--
T ss_pred             CCEEEECCCHHHHHHHHHHHHC---CCCEEEEECChHHHhhc-----CCEEEeC--------CCCHH--------HHH--
Confidence            7899999999999999999874   67899999997755432     1344432        12221        111  


Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHH-HHHHHHHHHcC--CcEEEEEccCCC
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAA-PVIAGIAKSMG--ILTVGIATVPFC  242 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~a-PvIaeiake~g--i~tvaIvtlPf~  242 (279)
                      +.-++++|.++++.      +.-.. -.++..+|+++  +.+++-+..|..
T Consensus       403 ~agi~~ad~vi~~~------~~d~~ni~~~~~ak~l~~~~~iiar~~~~~~  447 (565)
T 4gx0_A          403 QAGIDRASGIIVTT------NDDSTNIFLTLACRHLHSHIRIVARANGEEN  447 (565)
T ss_dssp             HHTTTSCSEEEECC------SCHHHHHHHHHHHHHHCSSSEEEEEESSTTS
T ss_pred             hcCccccCEEEEEC------CCchHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence            23478999888853      34333 44567889887  467777766653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=80.54  E-value=9.4  Score=30.57  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=27.9

Q ss_pred             CCCceEEEEee----CcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          112 NNEAKIKVIGV----GGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       112 ~~~~kI~VIGI----GgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      ++..+|.|||.    |-.|..++.+|.+.   +.+.+.+|...
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~---G~~V~~vnp~~   51 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSK---GFEVLPVNPNY   51 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHT---TCEEEEECTTC
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHC---CCEEEEeCCCC
Confidence            45668999999    99999999999885   44677777653

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=80.43  E-value=9.5  Score=34.75  Aligned_cols=41  Identities=22%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcHHHHh
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDAQAMK  154 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NTD~~~L~  154 (279)
                      +.++||.|||+|..|...+..+.+.  .+++..+| |.|.+..+
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~   44 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAA--DNLEVHGVFDILAEKRE   44 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTS--TTEEEEEEECSSHHHHH
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhC--CCcEEEEEEcCCHHHHH
Confidence            4568999999999999998877653  57888765 77776554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=80.15  E-value=3.6  Score=36.51  Aligned_cols=42  Identities=21%  Similarity=0.525  Sum_probs=32.9

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS  156 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s  156 (279)
                      ..+ ++.|||.|++|..++..|.+.+.  -+..++|-+.+..+..
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~--~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGV--KDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTC--CCEEEEESCHHHHHTC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHH
Confidence            356 99999999999999999998543  2567788887766553

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=80.06  E-value=2.6  Score=40.65  Aligned_cols=46  Identities=13%  Similarity=0.116  Sum_probs=32.8

Q ss_pred             CCCCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          106 SSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       106 ~~~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +-..+....|||.|||.|-.|..++..|.+    +.+.+.+|.|.+.++.
T Consensus        28 ~~~~r~~~~mkIaVIGlG~mG~~lA~~La~----G~~V~~~D~~~~~v~~   73 (432)
T 3pid_A           28 QQMGRGSEFMKITISGTGYVGLSNGVLIAQ----NHEVVALDIVQAKVDM   73 (432)
T ss_dssp             -------CCCEEEEECCSHHHHHHHHHHHT----TSEEEEECSCHHHHHH
T ss_pred             cccccccCCCEEEEECcCHHHHHHHHHHHc----CCeEEEEecCHHHhhH
Confidence            334455667899999999999999987754    5788889998877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1ofua1	198	c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps	6e-61
d1rq2a1	198	c.32.1.1 (A:8-205) Cell-division protein FtsZ {Myc	1e-55
d2vapa1	209	c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar	1e-54
d1w5fa1	194	c.32.1.1 (A:22-215) Cell-division protein FtsZ {Th	2e-50

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  189 bits (482), Expect = 6e-61
 Identities = 96/164 (58%), Positives = 117/164 (71%), Gaps = 2/164 (1%)

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           A IKVIGVGGGG NAVN M ++++ GVEF   NTDAQA+K         LQ+G  +T+GL
Sbjct: 2   AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLGPGVTKGL 59

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAG NP VG  AA E +  I E + GADM+F+T GMGGGTGTGAAP+IA +AK MGILTV
Sbjct: 60  GAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTV 119

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            + T PF FEGR+R   A EG+  L  +VD+LI IPN+KLLT +
Sbjct: 120 AVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 163

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  175 bits (446), Expect = 1e-55
 Identities = 98/164 (59%), Positives = 123/164 (75%), Gaps = 2/164 (1%)

Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
           A IKV+G+GGGG NAVNRMIE  + GVEF  +NTDAQA+ +S    + +L +G + TRGL
Sbjct: 2   AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGL 59

Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
           GAG +P VG  AA ++K  IEE + GADM+FVTAG GGGTGTG APV+A IA+ +G LTV
Sbjct: 60  GAGADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTV 119

Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
           G+ T PF FEG+RR+ QA+ G+A LR + DTLIVIPND+LL   
Sbjct: 120 GVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMG 163

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  173 bits (441), Expect = 1e-54
 Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCEL 170
              +AKI V+G GG G+N + R+    + G +   +NTDAQ +  +    + ++ IG +L
Sbjct: 12  QQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKA--DKKILIGKKL 69

Query: 171 TRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG 230
           TRGLGAGGNP +G  AA ES   I+ AI  +DM+F+T G+GGGTGTG+APV+A I+K +G
Sbjct: 70  TRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIG 129

Query: 231 ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
            LTV + T+PF  EG+ R   A EG+  L+ + DTL+VIPN+KL   V
Sbjct: 130 ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 177

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

 Score =  162 bits (411), Expect = 2e-50
 Identities = 94/164 (57%), Positives = 115/164 (70%), Gaps = 2/164 (1%)

Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLG 175
           KIKVIGVGG G+NA+NRMIE  + GVEF  VNTD Q ++ S    + ++QIG  +TRGLG
Sbjct: 2   KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNA--DVKIQIGENITRGLG 59

Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
           AGG P +G  AA ES+  I E +    M+F+TAG GGGTGTGA+PVIA IAK MGILTV 
Sbjct: 60  AGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVA 119

Query: 236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
           I T PF FEG  R  +A EG+  LR +VDTLI I N+KL+  + 
Sbjct: 120 IVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELP 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	100.0
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	100.0
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	100.0
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	100.0
d2btoa1	244	Tubulin alpha-subunit {Prosthecobacter dejongeii [	99.85
d1tubb1	243	Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982	99.84
d1tuba1	245	Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98	99.83
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.89
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.58
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.31
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.26
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.12
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.99
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.95
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.88
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.78
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.72
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.67
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.5
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.33
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.54
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.49
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.46
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.38
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.87
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.81
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.67
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.54
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.31
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.04
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.57
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.55
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.51
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.46
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.43
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.99
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.95
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.54
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	91.5
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.29
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	91.26
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.68
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.34
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	90.26
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.58
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	89.11
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.99
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.72
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.53
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.53
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	87.81
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	87.11
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.93
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	86.75
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	86.54
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	86.46
d1x94a_	191	Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T	86.09
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	86.04
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	85.95
d1tk9a_	188	Phosphoheptose isomerase GmhA1 {Campylobacter jeju	85.83
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	85.76
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.6
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	82.43
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	82.36
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	82.06
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	81.7
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	81.3

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.5e-49  Score=346.86  Aligned_cols=162  Identities=60%  Similarity=0.972  Sum_probs=152.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      ++|+||||||||||++|+|+++++.+++|+++|||.++|..+.  +++|+++|++.|+|+|+|+||++|+++++++.++|
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~~~--~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~~~I   79 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSD--ADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDEI   79 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHCC--CSEEEECCTTTC-----CCCHHHHHHHHHHTHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHhcCC--cchhhccccccccCCCcCcChhhhHhhHHHHHHHH
Confidence            5899999999999999999999999999999999999999876  48999999999999999999999999999999999


Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHH
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKL  274 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L  274 (279)
                      +++|+++|+|||+||||||||||++|+|++++|++++++++|||+||+|||.+|..+|.++|++|++++|++|+||||+|
T Consensus        80 ~~~l~~~d~vfi~AGlGGgTGtGaaPviA~iake~g~l~v~ivt~PF~~EG~~r~~~A~~gl~~L~~~~D~~Ivi~Nd~L  159 (198)
T d1rq2a1          80 EELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRL  159 (198)
T ss_dssp             HHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHHCSEEEEEEHHHH
T ss_pred             HHHhcCCCEEEEEEecCCCCCcchHHHHHHHHHHcCCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhhCeEEEechhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 044090          275 LTAV  278 (279)
Q Consensus       275 ~~i~  278 (279)
                      +++.
T Consensus       160 ~~~~  163 (198)
T d1rq2a1         160 LQMG  163 (198)
T ss_dssp             TTSS
T ss_pred             Hhhc
Confidence            9864

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.9e-49  Score=344.16  Aligned_cols=162  Identities=58%  Similarity=0.902  Sum_probs=157.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      +||+|||+||||||++|+|++.++.+++|+++|||.++|..++  +++|+++|++.++|+|+|++|++|+++++++.++|
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~--a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~~~I   78 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASN--ADVKIQIGENITRGLGAGGRPEIGEQAALESEEKI   78 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCC--CSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCC--cceEEecccccCCCcccccCchhhHhHHHHHHHHH
Confidence            6999999999999999999999999999999999999999876  48999999999999999999999999999999999


Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHH
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKL  274 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L  274 (279)
                      ++.++++|+|||+||||||||||++|+|++++|++++++++|+|+||.|||.+|..||.++|++|++++|++|+||||+|
T Consensus        79 ~~~l~~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv~ivtlPF~~EG~~r~~~A~~gl~~L~~~~D~~Ivi~Nd~L  158 (194)
T d1w5fa1          79 REVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKL  158 (194)
T ss_dssp             HHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHTCSEEEEEEHHHH
T ss_pred             HHHhcCCCeEEEEEecCCCcccchHHHHHHHHHHcCCceEEEEeechhhhHHHHHHHHHHHHHHHHHHhhhhheehHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 044090          275 LTAV  278 (279)
Q Consensus       275 ~~i~  278 (279)
                      ++..
T Consensus       159 ~~~~  162 (194)
T d1w5fa1         159 MEEL  162 (194)
T ss_dssp             HTTS
T ss_pred             HHhc
Confidence            8754

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=4.6e-48  Score=340.42  Aligned_cols=162  Identities=59%  Similarity=0.916  Sum_probs=157.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      ++|+|||+||||||++|+|.+.++.+++|+++|||.++|..++  +++|+++|+..++|+|+|++|++|+++++++.++|
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~--~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~~I   79 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIA--ARTVLQLGPGVTKGLGAGANPEVGRQAALEDRERI   79 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCS--CSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHHHH
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCC--ccceeccccccccCCCCCCChHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999875  58999999999999999999999999999999999


Q ss_pred             HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHH
Q 044090          195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKL  274 (279)
Q Consensus       195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L  274 (279)
                      ++.|+++|+|||+||||||||||++|+|++++|++++++++|||+||.|||.+|..+|.++|++|++++|++|+||||+|
T Consensus        80 ~~~l~~~d~vfi~AGlGGGTGtgaapviA~~ake~g~lvvaivtlPF~~EG~~r~~~A~~gl~~L~~~~d~~ivi~Nd~l  159 (198)
T d1ofua1          80 SEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKL  159 (198)
T ss_dssp             HHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHTTCSEEEEEEHHHH
T ss_pred             HHHhCCCCeEEEEecCCCCccccHHHHHHHHHHHcCCCEEEEEecchHHHHHHHHHHHHHHHHHHHHHCCEEEEEehhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 044090          275 LTAV  278 (279)
Q Consensus       275 ~~i~  278 (279)
                      ++..
T Consensus       160 ~~~~  163 (198)
T d1ofua1         160 LTIL  163 (198)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            9864

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.7e-47  Score=339.06  Aligned_cols=164  Identities=48%  Similarity=0.833  Sum_probs=159.1

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      .++||+||||||||||++|+|++.++.+++|+++|||.++|..++  +++|+++|+..++|+|+|++|++|+++++++.+
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~--~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~~   91 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTK--ADKKILIGKKLTRGLGAGGNPKIGEEAAKESAE   91 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSC--CSEEEECCTTTTTTBCCTTCHHHHHHHHHHTHH
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCC--cchhcccccccccccccccchHHHHHHHHHHHH
Confidence            458999999999999999999999999999999999999999875  489999999999999999999999999999999


Q ss_pred             HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEech
Q 044090          193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPND  272 (279)
Q Consensus       193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd  272 (279)
                      +|++.++++|+|||+||||||||||++|+|++++|++++++++++|+||.|||.+|.+||.++|++|++++|.+|+||||
T Consensus        92 ~I~~~l~~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv~ivtlPF~~EG~~r~~~A~~~l~~l~~~~d~~Ivi~Nd  171 (209)
T d2vapa1          92 EIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNE  171 (209)
T ss_dssp             HHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHTTCSEEEEEEGG
T ss_pred             HHHHhccCCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEEEEEecchhhhhHHHHHHHHHHHHHHHHhhcceEecccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 044090          273 KLLTAV  278 (279)
Q Consensus       273 ~L~~i~  278 (279)
                      +|+++.
T Consensus       172 ~L~~~~  177 (209)
T d2vapa1         172 KLFEIV  177 (209)
T ss_dssp             GHHHHS
T ss_pred             HHHHhc
Confidence            999763

>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

Probab=99.85  E-value=3.4e-21  Score=172.85  Aligned_cols=158  Identities=21%  Similarity=0.326  Sum_probs=122.8

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CCC------------------------c-------ceEEEEeCcHHHHhcC---
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SMT------------------------G-------VEFWIVNTDAQAMKVS---  156 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~~------------------------~-------ve~iavNTD~~~L~~s---  156 (279)
                      .+..|.|||||..|-+++.+.     +..                        .       ...+.||+|...+...   
T Consensus         3 ~~I~iqvGQcGnQIG~~fw~~l~~EH~i~~~~~~~~~~~~~~~~~~~ff~~~~e~~~~~~~pRavliD~Ep~vi~~~~~~   82 (244)
T d2btoa1           3 NTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVKAT   82 (244)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTTCCCSSSCCCSSSGGGTEEECSCC--CCEEECEEEEESSSHHHHHHHHH
T ss_pred             eeEEEecCChHHHHHHHHHHHHHHHhCCCCCCCcCCCcccccCCccccccccccccCCCcccceEEEcCCcchhhhhccc
Confidence            478899999999998877542     110                        0       2447789987766542   


Q ss_pred             --CCCCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHH
Q 044090          157 --PVIPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA  226 (279)
Q Consensus       157 --~v~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeia  226 (279)
                        ....++.+..++     .|+|+||+.|     .+..++.+|.|++.+|.||   +|+|+++||||||||.+..|++.+
T Consensus        83 ~~~~f~~~~~i~~~-----~gsgnNwa~Gy~~~G~~~~d~i~d~irk~~E~cD~l~gf~i~hSl~GGTGSGlgs~l~e~l  157 (244)
T d2btoa1          83 SGSLFNPANLISRT-----EGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESL  157 (244)
T ss_dssp             STTCSCGGGEEECS-----SCCTTCHHHHHTSHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred             cccccCcccccccc-----cccccchhhhcchhHHHHHHHHHHHHHHHHHhCCCccceeEeeeeccccccchhhHHHHHH
Confidence              112234444443     4899999986     4777899999999999999   999999999999999999999998


Q ss_pred             HH-cC-CcEEEEEccCC--CCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          227 KS-MG-ILTVGIATVPF--CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       227 ke-~g-i~tvaIvtlPf--~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      ++ |+ ...+.+.+.|+  ..|-...+||+.++|+.|.+++|.+++||||+|+++|
T Consensus       158 ~d~yp~~~~~~~~V~P~~~~~~~vvqpYNsiLsl~~L~e~sD~~~~~dN~al~~i~  213 (244)
T d2btoa1         158 KEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLA  213 (244)
T ss_dssp             HHHTCSSCEEEEEEECCCCSSCEESHHHHHHHHHHHHHHTCSEEEEEEHHHHHHHH
T ss_pred             HHHhcCceEEEEEEEecCCCCcccccccHHHHHHHHHHhcCceEEEeehHHHHHHH
Confidence            75 54 33344444455  3466789999999999999999999999999999987

>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.84  E-value=2.3e-21  Score=173.86  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=125.4

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCC---------------------------------cceEEEEeCcHHHHhcCCC----
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMT---------------------------------GVEFWIVNTDAQAMKVSPV----  158 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~---------------------------------~ve~iavNTD~~~L~~s~v----  158 (279)
                      .|..|-+||||..|-+++.+.-..                                 -...+.||++...++....    
T Consensus         3 EiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~   82 (243)
T d1tubb1           3 EIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFG   82 (243)
T ss_dssp             EEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSSSC
T ss_pred             cEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCccc
Confidence            588999999999999998765110                                 0234778888777665221    


Q ss_pred             --CCCCeEEcCcccccCCCCCCCchhhH-----HHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090          159 --IPENRLQIGCELTRGLGAGGNPSVGM-----NAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS  228 (279)
Q Consensus       159 --~a~~ri~iG~~~t~G~GaG~np~~G~-----eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake  228 (279)
                        ..++.+..|     -.|+|+||+.|+     +..++.+|.|++.+|.||   .|+|+++||||||||.+..|++.+++
T Consensus        83 ~~f~~~~~i~~-----~~gagNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d  157 (243)
T d1tubb1          83 QIFRPDNFVFG-----QSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE  157 (243)
T ss_dssp             CCCSSSCCCCT-----TCCCCSSTHHHHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHH
T ss_pred             cccCccceEEc-----ccCcccceeeeeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhh
Confidence              112233333     359999999974     777889999999999999   99999999999999999999999885


Q ss_pred             -cC-CcEEEEEccCC--CCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhhC
Q 044090          229 -MG-ILTVGIATVPF--CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS  279 (279)
Q Consensus       229 -~g-i~tvaIvtlPf--~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~~  279 (279)
                       |+ ...+.+.+.|.  ..|-...+||+.++|+.|.+++|.+++||||+|+++|.
T Consensus       158 ~yp~~~~~~~~V~P~~~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~i~~  212 (243)
T d1tubb1         158 EYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF  212 (243)
T ss_dssp             HCSSSCEEECCCCCCTTCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHHHTT
T ss_pred             hcccceEEEEeecCCcccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHHHHH
Confidence             55 44454455565  36677999999999999999999999999999999984

>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=6.5e-21  Score=171.28  Aligned_cols=158  Identities=15%  Similarity=0.140  Sum_probs=125.7

Q ss_pred             eEEEEeeCcchHHHHHHHHHc-----CC---------------------------C---cceEEEEeCcHHHHhcCC---
Q 044090          116 KIKVIGVGGGGSNAVNRMIES-----SM---------------------------T---GVEFWIVNTDAQAMKVSP---  157 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~-----~~---------------------------~---~ve~iavNTD~~~L~~s~---  157 (279)
                      .|..|-|||||..|-+++.+.     +.                           .   -...+.||++...++...   
T Consensus         3 EII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~~~   82 (245)
T d1tuba1           3 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT   82 (245)
T ss_dssp             CCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSGGG
T ss_pred             cEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeeccCc
Confidence            367889999999999998742     00                           0   034588999987776521   


Q ss_pred             ---CCCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHH
Q 044090          158 ---VIPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA  226 (279)
Q Consensus       158 ---v~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeia  226 (279)
                         ...++.+..|+     .|+|+||+.|     .+..++.+|.|++++|.||   .|+|+++||||||||.+..|.+++
T Consensus        83 ~~~~f~~~~~i~~~-----~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l  157 (245)
T d1tuba1          83 YRQLFHPEQLITGK-----EDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERL  157 (245)
T ss_dssp             CSCCCCSSSEEECC-----SCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHH
T ss_pred             chhccCccccccCC-----CCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHH
Confidence               12233454444     4899999985     5777889999999999999   999999999999999999999998


Q ss_pred             HH-cC-CcEEEEEccCCC--CchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090          227 KS-MG-ILTVGIATVPFC--FEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV  278 (279)
Q Consensus       227 ke-~g-i~tvaIvtlPf~--~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~  278 (279)
                      ++ |+ ...+.+++.|+.  .|-...+||+.++|+.|.+++|.+++||||+|+++|
T Consensus       158 ~d~yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~  213 (245)
T d1tuba1         158 SVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC  213 (245)
T ss_dssp             HHHTTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_pred             HHhcccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHH
Confidence            85 54 455566667763  566789999999999999999999999999999987

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0011  Score=48.53  Aligned_cols=92  Identities=22%  Similarity=0.317  Sum_probs=56.2

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      ++.+.||.|+|+|..|-.+++.|.++   +.++++.|.....-..........+.++..                    .
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~---g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~--------------------~   58 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLAR---GVTPRVMDTRMTPPGLDKLPEAVERHTGSL--------------------N   58 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHT---TCCCEEEESSSSCTTGGGSCTTSCEEESBC--------------------C
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHC---CCEEEEeeCCcCchhHHHHhhccceeeccc--------------------c
Confidence            56778999999999999999999885   678888887322111111111223333321                    0


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEE
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG  235 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tva  235 (279)
                          ...+.++|.+++.-|+-      ..--+.+.|++.++++++
T Consensus        59 ----~~~~~~~d~vi~SPGi~------~~~~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          59 ----DEWLMAADLIVASPGIA------LAHPSLSAAADAGIEIVG   93 (93)
T ss_dssp             ----HHHHHHCSEEEECTTSC------TTSHHHHHHHHTTCEEEC
T ss_pred             ----hhhhccCCEEEECCCCC------CCCHHHHHHHHcCCCeEC
Confidence                12345779999855443      222344667777888764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.0078  Score=47.36  Aligned_cols=100  Identities=23%  Similarity=0.393  Sum_probs=63.3

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc--------CCCCCCCeEEcCcccccCCCCCCCchhhHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV--------SPVIPENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~--------s~v~a~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      |||.|||.|+.|..++-.|...++ .-|...+|.|.+.+..        +......++.-           ++       
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~-----------~~-------   61 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-----------GD-------   61 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-----------CC-------
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CCEEEEEecccccccchhccccccccccccccccC-----------Cc-------
Confidence            799999999999999988888764 3477778876544332        11101111111           01       


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                              .+.++++|.|++++|..-..|..-       ++++.++++.   +. --.+-++|-|-
T Consensus        62 --------~~~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPv  119 (140)
T d1a5za1          62 --------YADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV  119 (140)
T ss_dssp             --------GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred             --------HHHhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcH
Confidence                    235789999999999887777653       4445444433   33 34566777775

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.31  E-value=0.014  Score=46.13  Aligned_cols=101  Identities=22%  Similarity=0.267  Sum_probs=63.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH-------hcC--CCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM-------KVS--PVIPENRLQIGCELTRGLGAGGNPSVGMN  185 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L-------~~s--~v~a~~ri~iG~~~t~G~GaG~np~~G~e  185 (279)
                      |||.|||.|..|..++-.+..++. --|...+|.|.+.+       ...  ..+...++....+                
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d----------------   63 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD----------------   63 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC----------------
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCc-CceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC----------------
Confidence            799999999999999988887653 23677788765442       211  1111223322111                


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                               .+.+.++|.+++++|..=..|..-       ++++.+++++   +. --.+.++|-|-
T Consensus        64 ---------~~~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPv  121 (142)
T d1ojua1          64 ---------YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM  121 (142)
T ss_dssp             ---------GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH
T ss_pred             ---------HHHhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCCh
Confidence                     136789999999999877766643       4444445443   33 34566777774

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.26  E-value=0.01  Score=45.23  Aligned_cols=95  Identities=24%  Similarity=0.311  Sum_probs=61.1

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      |||.|+|.|.-|..++..|.+.   +.++++|+.|.+.++...-.-...+..|..        .++           +-+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~---g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~--------~~~-----------~~l   58 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK---GHDIVLIDIDKDICKKASAEIDALVINGDC--------TKI-----------KTL   58 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCSSEEEESCT--------TSH-----------HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCCcceecCChhhhhhhhhhhhhhhccCcc--------cch-----------hhh
Confidence            7999999999999999999874   678999999998776421000234444421        222           223


Q ss_pred             HHH-hcCCCEEEEEeecCCCcccCHHHHH-HHHHHHcCCc-EEEEE
Q 044090          195 EEA-ISGADMIFVTAGMGGGTGTGAAPVI-AGIAKSMGIL-TVGIA  237 (279)
Q Consensus       195 ~~~-Le~~D~vfIvAGLGGGTGSG~aPvI-aeiake~gi~-tvaIv  237 (279)
                      +++ ++.+|.|+.+      |+.-...++ +.++|+++.. +++.+
T Consensus        59 ~~~~i~~a~~vv~~------t~~d~~N~~~~~~~k~~~~~~iI~~~   98 (132)
T d1lssa_          59 EDAGIEDADMYIAV------TGKEEVNLMSSLLAKSYGINKTIARI   98 (132)
T ss_dssp             HHTTTTTCSEEEEC------CSCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             hhcChhhhhhhccc------CCcHHHHHHHHHHHHHcCCceEEEEe
Confidence            333 6789977774      444444443 5677888755 44443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.2  Score=39.90  Aligned_cols=103  Identities=18%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             CCCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          112 NNEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       112 ~~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      +...||.|+| -|..|..++++|+++   +.+..++.-|...+.... ...-.+..|.           .        .+
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~---g~~V~~~~R~~~~~~~~~-~~~~~~~~gD-----------~--------~d   57 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQA---GYEVTVLVRDSSRLPSEG-PRPAHVVVGD-----------V--------LQ   57 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESCGGGSCSSS-CCCSEEEESC-----------T--------TS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC---cCEEEEEEcChhhccccc-cccccccccc-----------c--------cc
Confidence            3567999999 589999999999985   567888876666554321 1122333321           1        13


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCc-ccC----HHHHHHHHHHHcCCcEEEEE
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGT-GTG----AAPVIAGIAKSMGILTVGIA  237 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGT-GSG----~aPvIaeiake~gi~tvaIv  237 (279)
                      .+.+.++++++|.||.++|....- ...    .+..+++.+++.++..+-.+
T Consensus        58 ~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~  109 (205)
T d1hdoa_          58 AADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVAC  109 (205)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             hhhHHHHhcCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEE
Confidence            456788899999988776543221 111    23456677788776655443

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.99  E-value=0.014  Score=46.32  Aligned_cols=102  Identities=23%  Similarity=0.331  Sum_probs=59.6

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH-------HhcC-CCCCCCeEEcCcccccCCCCCCCchhhH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA-------MKVS-PVIPENRLQIGCELTRGLGAGGNPSVGM  184 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~-------L~~s-~v~a~~ri~iG~~~t~G~GaG~np~~G~  184 (279)
                      +++||.|||.|..|..++-.|...++ .-|...+|.|.+.       |... ......++..           +++    
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~-----------~d~----   67 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-----------GEY----   67 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-----------CCG----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeecccchhHHHHHHHhccccccCCceEee-----------ccH----
Confidence            46899999999999999999988764 3477888887642       2221 1111222221           122    


Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHH---HcC-CcEEEEEccCC
Q 044090          185 NAANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAK---SMG-ILTVGIATVPF  241 (279)
Q Consensus       185 eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiak---e~g-i~tvaIvtlPf  241 (279)
                                 +.+.+||.|++++|..-..|.--       ++++.++++   ++. .-++-+++-|-
T Consensus        68 -----------~~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPv  124 (146)
T d1ez4a1          68 -----------SDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV  124 (146)
T ss_dssp             -----------GGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred             -----------HHhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCcc
Confidence                       35789999999987665443221       455555543   343 44455666675

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.95  E-value=0.019  Score=45.37  Aligned_cols=106  Identities=23%  Similarity=0.344  Sum_probs=64.9

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH-------HhcCCCCCCCeEEcCcccccCCCCCCCchhh
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA-------MKVSPVIPENRLQIGCELTRGLGAGGNPSVG  183 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~-------L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G  183 (279)
                      +..+.||.|||.|+.|..++-.|...++ .-|...+|.+...       |..........+.+..         ++    
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~---------~d----   68 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH---------GD----   68 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE---------CC----
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeeccccccchhccHhhCccccCCCeEEEE---------CC----
Confidence            3456799999999999999998888764 3367778875543       4332111111222211         01    


Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeecCCCcccC---H----HHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          184 MNAANESKVAIEEAISGADMIFVTAGMGGGTGTG---A----APVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG---~----aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                                 .+.+++||.|++++|..-..|.-   .    ++++.+++++   +. --.+.++|-|-
T Consensus        69 -----------~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPv  126 (148)
T d1ldna1          69 -----------YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV  126 (148)
T ss_dssp             -----------GGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH
T ss_pred             -----------HHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcc
Confidence                       13578999999999886655542   1    4555555443   32 34566777776

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.88  E-value=0.035  Score=43.64  Aligned_cols=103  Identities=19%  Similarity=0.307  Sum_probs=57.3

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH-----HHhcCCCCC-CCeEEcCcccccCCCCCCCchhhHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ-----AMKVSPVIP-ENRLQIGCELTRGLGAGGNPSVGMNAA  187 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~-----~L~~s~v~a-~~ri~iG~~~t~G~GaG~np~~G~eaa  187 (279)
                      +.||.|||.|..|..++-.+...++ .-|...+|.+..     +++..+..+ ..+..+    +.     ++        
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~----~~-----~~--------   62 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL----YA-----GD--------   62 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC---CCHHHHHHTTSCCCTTCEEE----C-------C--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccCCccceeeeeeccCcccCCCeeE----ee-----Cc--------
Confidence            3699999999999999988888664 346777886543     233222110 011111    00     11        


Q ss_pred             HHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          188 NESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                             .+.+++||.|++++|..--.|..-       ++++.+++++   +. --++-++|-|-
T Consensus        63 -------~~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPv  120 (142)
T d1y6ja1          63 -------YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV  120 (142)
T ss_dssp             -------GGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSH
T ss_pred             -------HHHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChH
Confidence                   235889999999988765554433       4444444433   33 34566778886

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.78  E-value=0.024  Score=45.17  Aligned_cols=105  Identities=20%  Similarity=0.243  Sum_probs=62.2

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH-------HHhcCC-CCCCCeEEcCcccccCCCCCCCchhh
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ-------AMKVSP-VIPENRLQIGCELTRGLGAGGNPSVG  183 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~-------~L~~s~-v~a~~ri~iG~~~t~G~GaG~np~~G  183 (279)
                      ..+.||.|||.|..|..++-.|...++  .|.+.+|.+..       +|.... ....+....+.               
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~--~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---------------   67 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALREL--ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE---------------   67 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTC--CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE---------------
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC--ceEEEEEeccccchhHHHHHhhhccccCCeeEEecc---------------
Confidence            346899999999999998877777654  47777776432       111100 00001111110               


Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeecCCCcc------cC------HHHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          184 MNAANESKVAIEEAISGADMIFVTAGMGGGTG------TG------AAPVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTG------SG------~aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                              ...++.++++|.|++++|.+.--|      +.      -++++.+++++   ++ --++.++|-|-
T Consensus        68 --------~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPv  133 (154)
T d1pzga1          68 --------YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPL  133 (154)
T ss_dssp             --------CSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred             --------CchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcH
Confidence                    012457789999999999876544      22      14566666544   44 44566777776

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.038  Score=43.75  Aligned_cols=103  Identities=21%  Similarity=0.346  Sum_probs=59.0

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHH------HHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHH
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQ------AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA  187 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~------~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa  187 (279)
                      |||.|||. |+.|..++-.|..+....-|...+|++..      +|.........+...+..                  
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~------------------   62 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED------------------   62 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSC------------------
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCC------------------
Confidence            79999996 99999998766544333456777887432      232322111112221111                  


Q ss_pred             HHHHHHHHHHhcCCCEEEEEeecCCCcc---cCH----HHHHHHHHH---HcC-CcEEEEEccCC
Q 044090          188 NESKVAIEEAISGADMIFVTAGMGGGTG---TGA----APVIAGIAK---SMG-ILTVGIATVPF  241 (279)
Q Consensus       188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTG---SG~----aPvIaeiak---e~g-i~tvaIvtlPf  241 (279)
                            ..+.++++|.|++++|.---.|   ...    ++++.++++   ++. --++.+++-|-
T Consensus        63 ------~~~~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPv  121 (145)
T d2cmda1          63 ------ATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPV  121 (145)
T ss_dssp             ------CHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSH
T ss_pred             ------CccccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCc
Confidence                  1246789999999998654333   222    344444443   333 44577777886

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.67  E-value=0.011  Score=44.75  Aligned_cols=88  Identities=18%  Similarity=0.284  Sum_probs=57.6

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHH
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIE  195 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~  195 (279)
                      ++.|||.|..|..++..|.+.   +.++++++.|.+.++...- ......+|..        .++           +.++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~---g~~vvvid~d~~~~~~~~~-~~~~~~~gd~--------~~~-----------~~l~   58 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM---GHEVLAVDINEEKVNAYAS-YATHAVIANA--------TEE-----------NELL   58 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT---TCCCEEEESCHHHHHHTTT-TCSEEEECCT--------TCT-----------THHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC---CCeEEEecCcHHHHHHHHH-hCCcceeeec--------ccc-----------hhhh
Confidence            689999999999999999985   5789999999999887532 2334445421        222           1223


Q ss_pred             H-HhcCCCEEEEEeecCCCcccC-HHHHHHH-HHHHcCCc
Q 044090          196 E-AISGADMIFVTAGMGGGTGTG-AAPVIAG-IAKSMGIL  232 (279)
Q Consensus       196 ~-~Le~~D~vfIvAGLGGGTGSG-~aPvIae-iake~gi~  232 (279)
                      + -++++|.++++      |+.- ..-.++. .++.++..
T Consensus        59 ~a~i~~a~~vi~~------~~~~~~~~~~~~~~~~~~~~~   92 (134)
T d2hmva1          59 SLGIRNFEYVIVA------IGANIQASTLTTLLLKELDIP   92 (134)
T ss_dssp             HHTGGGCSEEEEC------CCSCHHHHHHHHHHHHHTTCS
T ss_pred             ccCCccccEEEEE------cCchHHhHHHHHHHHHHcCCC
Confidence            3 37889988874      3333 3334444 44566644

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.50  E-value=0.023  Score=44.39  Aligned_cols=101  Identities=17%  Similarity=0.273  Sum_probs=59.7

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc-----CCC----CCCCeEEcCcccccCCCCCCCchhhHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-----SPV----IPENRLQIGCELTRGLGAGGNPSVGMN  185 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~-----s~v----~a~~ri~iG~~~t~G~GaG~np~~G~e  185 (279)
                      |||.|||.|+.|..++-.|...++ .-|...+|.|.+.+..     .+.    ....++.-.          +       
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~----------~-------   62 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS----------N-------   62 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE----------S-------
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CceEEEeccccccchhhhhhhhcccchhcccceEEec----------C-------
Confidence            799999999999999988887764 2366677765432221     110    001112100          0       


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                              ..+.++++|.+++++|..-..|..-       ++++.++++.   +. --.+.++|-|-
T Consensus        63 --------~~~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPv  121 (142)
T d1guza1          63 --------DYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL  121 (142)
T ss_dssp             --------CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSH
T ss_pred             --------CHHHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCCh
Confidence                    1245789999999998755554332       4555554433   33 33466677775

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.33  E-value=0.034  Score=44.95  Aligned_cols=77  Identities=21%  Similarity=0.371  Sum_probs=48.6

Q ss_pred             CCceEEEEeeCcchH--HHHHHHHHcC-CCcceEEEEeCcHHHHhcCC---------CCCCCeEEcCcccccCCCCCCCc
Q 044090          113 NEAKIKVIGVGGGGS--NAVNRMIESS-MTGVEFWIVNTDAQAMKVSP---------VIPENRLQIGCELTRGLGAGGNP  180 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~--NIVd~l~~~~-~~~ve~iavNTD~~~L~~s~---------v~a~~ri~iG~~~t~G~GaG~np  180 (279)
                      ..|||.|||.|..|.  .++..+.... +...|.+.+|.|.+.++...         ...+-++.-.             
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------   67 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT-------------   67 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE-------------
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe-------------
Confidence            368999999998775  4555555432 34568889999987665310         0011122111             


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090          181 SVGMNAANESKVAIEEAISGADMIFVTAGMGGG  213 (279)
Q Consensus       181 ~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGG  213 (279)
                                 ...+++|++||.|+++++.||-
T Consensus        68 -----------td~~eaL~dad~Vv~~~~~g~~   89 (171)
T d1obba1          68 -----------MNLDDVIIDADFVINTAMVGGH   89 (171)
T ss_dssp             -----------SCHHHHHTTCSEEEECCCTTHH
T ss_pred             -----------CChhhcccCCCeEeeecccccc
Confidence                       1246788999999998877653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.54  E-value=0.11  Score=41.01  Aligned_cols=36  Identities=19%  Similarity=0.494  Sum_probs=29.2

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      .||.|||.|..|+.++-.|..+++ --|++.+|.|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEecccc
Confidence            599999999999999999988764 236777887655

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.49  E-value=0.058  Score=43.91  Aligned_cols=79  Identities=16%  Similarity=0.301  Sum_probs=51.6

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH---
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK---  191 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~---  191 (279)
                      |||.|||+|-.|.-++-.|.+.   +.+.+++|.|.+.++...   ..+..+-           .+...+...+...   
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~---g~~V~g~D~n~~~i~~ln---~g~~p~~-----------e~~~~~~l~~~~~~~~   63 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR---GHEVIGVDVSSTKIDLIN---QGKSPIV-----------EPGLEALLQQGRQTGR   63 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHH---TTCCSSC-----------CTTHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHhHHHHHHHHHhC---CCcEEEEeCCHHHHHHhc---ccCCccc-----------chhhhhhhhhhhcccc
Confidence            8999999999999999999874   678899999988776531   1111111           1222222221111   


Q ss_pred             ----HHHHHHhcCCCEEEEEeec
Q 044090          192 ----VAIEEAISGADMIFVTAGM  210 (279)
Q Consensus       192 ----e~I~~~Le~~D~vfIvAGL  210 (279)
                          ..+.++++++|++||+-..
T Consensus        64 ~~~~~~~~~~i~~~d~i~i~VpT   86 (202)
T d1mv8a2          64 LSGTTDFKKAVLDSDVSFICVGT   86 (202)
T ss_dssp             EEEESCHHHHHHTCSEEEECCCC
T ss_pred             cccCCCHHHHHhhCCEEEEecCc
Confidence                1256778899999997754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.46  E-value=0.19  Score=40.29  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=31.8

Q ss_pred             CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      ....+.||.|||.|.-|..++-.|..+++ --|.+.+|.+.
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~   55 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE   55 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            44566799999999999999999988764 23677888754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.38  E-value=0.18  Score=39.69  Aligned_cols=78  Identities=15%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH--H-------HHhc--CCCCCCCeEEcCcccccCCCCCCCchh
Q 044090          115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA--Q-------AMKV--SPVIPENRLQIGCELTRGLGAGGNPSV  182 (279)
Q Consensus       115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~--~-------~L~~--s~v~a~~ri~iG~~~t~G~GaG~np~~  182 (279)
                      |||.|||. |..|..++-.|..+++- -|...+|.+.  .       +|..  .......++.++..        .+   
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~-~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~--------~d---   68 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFM-KDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESD--------EN---   68 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTC-CEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEET--------TC---
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcc-cccccccchhhhHhhhcccccchhcccccccCCccccCCc--------ch---
Confidence            79999996 99999999888776532 3566677642  2       2222  11112234443321        11   


Q ss_pred             hHHHHHHHHHHHHHHhcCCCEEEEEeecCCCccc
Q 044090          183 GMNAANESKVAIEEAISGADMIFVTAGMGGGTGT  216 (279)
Q Consensus       183 G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGS  216 (279)
                                  .+.+++||.|+|+||..=..|.
T Consensus        69 ------------~~~l~~aDvVVitAG~~~~~g~   90 (145)
T d1hyea1          69 ------------LRIIDESDVVIITSGVPRKEGM   90 (145)
T ss_dssp             ------------GGGGTTCSEEEECCSCCCCTTC
T ss_pred             ------------HHHhccceEEEEecccccCCCC
Confidence                        2467899999999987655553

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.87  E-value=0.058  Score=42.88  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=28.2

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      ++.||.|||.|+-|..++-.|..+.+  .|.+.+|.+.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l--~el~L~Di~~   37 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNL--GDVVLFDIVK   37 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC--CeEEEEeccC
Confidence            46799999999999999976666655  4777788643

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.81  E-value=0.21  Score=39.07  Aligned_cols=101  Identities=21%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH-------HhcC-CCCCCCeEEcCcccccCCCCCCCchhhHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA-------MKVS-PVIPENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~-------L~~s-~v~a~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      .||.|||.|..|+.++-.|..+++ .-|.+.+|.+...       |... ......++.-+.          +       
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~----------~-------   63 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD----------D-------   63 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES----------C-------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEeccccchhHHHHHHhccccCCCceeecCC----------C-------
Confidence            489999999999999999988764 3477888886543       2221 111112221111          1       


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                              .+.+.++|.|++++|.--.-|.--       ++++.+++++   +. --++-++|-|-
T Consensus        64 --------~~~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPv  121 (143)
T d1llda1          64 --------PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  121 (143)
T ss_dssp             --------GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             --------HHHhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCch
Confidence                    235778999999998865554432       4444444433   33 33456677775

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.67  E-value=0.037  Score=44.19  Aligned_cols=74  Identities=20%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             ceEEEEeeCcchHHHH-HHHHHc--CCCcceEEEEeCcHHHHhcCC------CCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090          115 AKIKVIGVGGGGSNAV-NRMIES--SMTGVEFWIVNTDAQAMKVSP------VIPENRLQIGCELTRGLGAGGNPSVGMN  185 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIV-d~l~~~--~~~~ve~iavNTD~~~L~~s~------v~a~~ri~iG~~~t~G~GaG~np~~G~e  185 (279)
                      |||.|||.|..|...+ ..|++.  .+...+...+|.|.+.+....      .....++.+..                 
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~-----------------   63 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISD-----------------   63 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECS-----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEec-----------------
Confidence            7999999998886655 333332  234567888999887665310      00112222211                 


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090          186 AANESKVAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       186 aa~e~~e~I~~~Le~~D~vfIvAGLGG  212 (279)
                             .-.+.+++||.|+++++.+|
T Consensus        64 -------~~~~~l~~aDvVVita~~~~   83 (162)
T d1up7a1          64 -------TFEGAVVDAKYVIFQFRPGG   83 (162)
T ss_dssp             -------SHHHHHTTCSEEEECCCTTH
T ss_pred             -------CcccccCCCCEEEEecccCC
Confidence                   12467899999999998764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.54  E-value=0.37  Score=37.64  Aligned_cols=103  Identities=19%  Similarity=0.296  Sum_probs=58.6

Q ss_pred             ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHH---HHhcCCCC--CCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090          115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQ---AMKVSPVI--PENRLQIGCELTRGLGAGGNPSVGMNAAN  188 (279)
Q Consensus       115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~---~L~~s~v~--a~~ri~iG~~~t~G~GaG~np~~G~eaa~  188 (279)
                      .||.||| .|..|.+++-.|..+++ --|...+|.+..   .++..+..  ...+..+..                    
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~--------------------   59 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHTPGVAADLSHIETRATVKGYLGP--------------------   59 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESG--------------------
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCc-cceEEEEeccccchhhHHHhhhhhhcCCCeEEcC--------------------
Confidence            4899999 59999999988776654 235666787432   22222221  111222211                    


Q ss_pred             HHHHHHHHHhcCCCEEEEEeecCCCccc---CH----HHHHHHHH---HHcC-CcEEEEEccCC
Q 044090          189 ESKVAIEEAISGADMIFVTAGMGGGTGT---GA----APVIAGIA---KSMG-ILTVGIATVPF  241 (279)
Q Consensus       189 e~~e~I~~~Le~~D~vfIvAGLGGGTGS---G~----aPvIaeia---ke~g-i~tvaIvtlPf  241 (279)
                         ....+.+++||.|++++|.-=..|.   ..    +.++.+++   ++++ --.+-+++-|-
T Consensus        60 ---~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv  120 (144)
T d1mlda1          60 ---EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV  120 (144)
T ss_dssp             ---GGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred             ---CChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch
Confidence               1134678999999999985333322   11    33443333   3344 55566777776

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.078  Score=42.64  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=31.7

Q ss_pred             CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090          109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA  150 (279)
Q Consensus       109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~  150 (279)
                      ..+..+.||.|||.|.-|..++-.|...++ .-|.+.+|.+.
T Consensus        14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~   54 (159)
T d2ldxa1          14 EDKLSRCKITVVGVGDVGMACAISILLKGL-ADELALVDADT   54 (159)
T ss_dssp             CCCCCCCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            345677899999999999999987776553 34677788764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.04  E-value=0.059  Score=42.24  Aligned_cols=38  Identities=18%  Similarity=0.385  Sum_probs=32.6

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      |||.|||+|-.|..++.+|.+.   +.+.++.|.+.+.++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~---G~~V~~~d~~~~~~~~   38 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKA---GYSLVVSDRNPEAIAD   38 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHC---CCeEEEEeCCcchhHH
Confidence            7999999999999999999985   5678888888776654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.069  Score=41.98  Aligned_cols=100  Identities=20%  Similarity=0.332  Sum_probs=67.9

Q ss_pred             CCCCCceEEEEeeCc-----------chHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCC
Q 044090          110 NNNNEAKIKVIGVGG-----------GGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGG  178 (279)
Q Consensus       110 ~~~~~~kI~VIGIGg-----------aG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~  178 (279)
                      ...+..||+|||-|.           ++..++.+|.+.   +++.+.||.+.+......- ...|+.+-+- |       
T Consensus         3 ~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~---g~~~iliN~NP~TVstd~d-~aD~lYfePl-t-------   70 (127)
T d1a9xa3           3 KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREE---GYRVINVNSNPATIMTDPE-MADATYIEPI-H-------   70 (127)
T ss_dssp             CCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH---TCEEEEECSCTTCGGGCGG-GSSEEECSCC-C-------
T ss_pred             CCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc---CCeEEEecCchHhhhcChh-hcceeeeecC-C-------
Confidence            345667999999875           567788888774   6889999999887765322 3467777542 1       


Q ss_pred             CchhhHHHHHHHHHHHHHHh--cCCCEEEEEeecCCCcccCHHHHHHH--HHHHcCCcEEE
Q 044090          179 NPSVGMNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAG--IAKSMGILTVG  235 (279)
Q Consensus       179 np~~G~eaa~e~~e~I~~~L--e~~D~vfIvAGLGGGTGSG~aPvIae--iake~gi~tva  235 (279)
                                  .|.|.+.+  +..|++++  ++||-|+-..+.-+.+  +++++++..++
T Consensus        71 ------------~e~v~~Ii~~E~pd~il~--~~GGQtalnla~~L~~~giL~~~~v~iLG  117 (127)
T d1a9xa3          71 ------------WEVVRKIIEKERPDAVLP--TMGGQTALNCALELERQGVLEEFGVTMIG  117 (127)
T ss_dssp             ------------HHHHHHHHHHHCCSEEEC--SSSHHHHHHHHHHHHHTTHHHHHTCEECS
T ss_pred             ------------HHHHHHHHHHhCcCCeEE--EeeeehHhHHHHHHHHcCcHHhcCCeEEC
Confidence                        23333333  58887654  7999997777766654  46778877654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.55  E-value=0.4  Score=37.46  Aligned_cols=99  Identities=23%  Similarity=0.326  Sum_probs=59.4

Q ss_pred             eEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcH-------H--HHhc-CCCCCCCeEEcCcccccCCCCCCCchhhH
Q 044090          116 KIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDA-------Q--AMKV-SPVIPENRLQIGCELTRGLGAGGNPSVGM  184 (279)
Q Consensus       116 kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~-------~--~L~~-s~v~a~~ri~iG~~~t~G~GaG~np~~G~  184 (279)
                      ||.||| .|+.|..++-.|..+++ .-|.+.+|.+.       +  +|.. ...+...++..+           ++    
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~-----------~~----   65 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-----------GY----   65 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEEC-----------CG----
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecCCcccccceeecchhhcccccCCceEeeC-----------CH----
Confidence            899999 69999999988887754 23666677421       1  2221 112122233221           11    


Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeecCCCcccC-------HHHHHHHHHHH---cC-CcEEEEEccCC
Q 044090          185 NAANESKVAIEEAISGADMIFVTAGMGGGTGTG-------AAPVIAGIAKS---MG-ILTVGIATVPF  241 (279)
Q Consensus       185 eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG-------~aPvIaeiake---~g-i~tvaIvtlPf  241 (279)
                                 +.+.+||.|++++|..-..|--       -++++.+++++   +. --++.++|-|-
T Consensus        66 -----------~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPv  122 (142)
T d1o6za1          66 -----------EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPV  122 (142)
T ss_dssp             -----------GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSH
T ss_pred             -----------HHhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChH
Confidence                       2468999999999876554432       15555555543   33 45577777886

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.51  E-value=0.066  Score=41.68  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      |||.|||+|-.|++++..|.+.   +.+.+++|-|.+.++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~---g~~V~~~d~~~~~~~~   38 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR---GHYLIGVSRQQSTCEK   38 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC---CCEEEEEECCchHHHH
Confidence            7999999999999999999874   5677888888766553

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.46  E-value=0.056  Score=42.73  Aligned_cols=38  Identities=21%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      .|||.|||+|-.|..++.+|++.   +.+.++.|-+....+
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~---G~~V~~~dr~~~~~~   38 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEK---GFKVAVFNRTYSKSE   38 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT---TCCEEEECSSHHHHH
T ss_pred             CCEEEEEeehHHHHHHHHHHHHC---CCeEEEEECCHHHHH
Confidence            38999999999999999999985   567888888766554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.43  E-value=0.067  Score=41.60  Aligned_cols=39  Identities=13%  Similarity=0.237  Sum_probs=33.0

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ||.|||+|-.|++++..|.+.+ ...+.+++|.|.+.++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g-~~~~I~~~D~~~~~~~~   41 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISK   41 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcC-CCeEEEEEECChHHHHH
Confidence            5999999999999999998865 35678899998877664

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.99  E-value=0.36  Score=35.03  Aligned_cols=84  Identities=18%  Similarity=0.212  Sum_probs=48.6

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC----cHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT----DAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES  190 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT----D~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~  190 (279)
                      |||-+|||||+|-.-+-+++..  .+.+.-.-|.    -.+.|+...+    ++..|...                    
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~--~G~~VsGSD~~~~~~t~~L~~~Gi----~i~~gh~~--------------------   55 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFS--NGNDVYGSNIEETERTAYLRKLGI----PIFVPHSA--------------------   55 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEECSSCCHHHHHHHHTTC----CEESSCCT--------------------
T ss_pred             cEEEEEeECHHHHHHHHHHHHh--CCCeEEEEeCCCChhHHHHHHCCC----eEEeeecc--------------------
Confidence            7999999999999876555554  3444333333    2233444322    45544321                    


Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEE
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG  235 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tva  235 (279)
                           +.++++|.|++..+.--.     -|. .+.|++.+++++.
T Consensus        56 -----~~i~~~d~vV~SsAI~~~-----npe-l~~A~~~gIpv~~   89 (89)
T d1j6ua1          56 -----DNWYDPDLVIKTPAVRDD-----NPE-IVRARMERVPIEN   89 (89)
T ss_dssp             -----TSCCCCSEEEECTTCCTT-----CHH-HHHHHHTTCCEEE
T ss_pred             -----cccCCCCEEEEecCcCCC-----CHH-HHHHHHcCCCccC
Confidence                 113678888775444322     244 4667788888763

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.17  Score=39.33  Aligned_cols=94  Identities=23%  Similarity=0.280  Sum_probs=62.1

Q ss_pred             CCCceEEEEeeCc-----------chHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCc
Q 044090          112 NNEAKIKVIGVGG-----------GGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNP  180 (279)
Q Consensus       112 ~~~~kI~VIGIGg-----------aG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np  180 (279)
                      .++.||+|||-|.           ++..++.+|.+   .+++.+.||.+++......- ...|+.|-+- |         
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~---~g~~~IliN~NPeTVstd~d-~aD~lYfepl-t---------   67 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE---DGYETIMVNCNPETVSTDYD-TSDRLYFEPV-T---------   67 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH---TTCEEEEECCCTTSSTTSTT-SSSEEECCCC-S---------
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHh---cCCeEEEEecChhhhhcChh-hcCceEEccC-C---------
Confidence            3567999999874           45667777777   57899999999887765422 3467777542 1         


Q ss_pred             hhhHHHHHHHHHHHHHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEE
Q 044090          181 SVGMNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG  235 (279)
Q Consensus       181 ~~G~eaa~e~~e~I~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tva  235 (279)
                                .|.|.+.+  |..|+|++  .+||-|+    --++.-+.+.|+.+++
T Consensus        68 ----------~e~v~~Ii~~E~p~~ii~--~~GGQta----lnla~~L~~~gv~iLG  108 (121)
T d1a9xa4          68 ----------LEDVLEIVRIEKPKGVIV--QYGGQTP----LKLARALEAAGVPVIG  108 (121)
T ss_dssp             ----------HHHHHHHHHHHCCSEEEC--SSSTHHH----HTTHHHHHHTTCCBCS
T ss_pred             ----------HHHHHHHHHHhCCCEEEe--ehhhhhH----HHHHHHHHHcCCcEEC
Confidence                      23344433  57887754  7888884    3344556677866543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.54  E-value=0.07  Score=44.43  Aligned_cols=42  Identities=14%  Similarity=0.392  Sum_probs=32.5

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ..+.|+.|||+||-|+.++..|...+..  ++..+|-|.-.+.+
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~Ve~sN   69 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTVSLSN   69 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBCCGGG
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCcccchhh
Confidence            4567999999999999999999997643  34567876555544

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.50  E-value=0.15  Score=41.07  Aligned_cols=76  Identities=14%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             CceEEEEeeCcchHH-HHHHHHHcC--CCcceEEEEeCcHHHHhcCCC---------CCCCeEEcCcccccCCCCCCCch
Q 044090          114 EAKIKVIGVGGGGSN-AVNRMIESS--MTGVEFWIVNTDAQAMKVSPV---------IPENRLQIGCELTRGLGAGGNPS  181 (279)
Q Consensus       114 ~~kI~VIGIGgaG~N-IVd~l~~~~--~~~ve~iavNTD~~~L~~s~v---------~a~~ri~iG~~~t~G~GaG~np~  181 (279)
                      ..||.|||-|..|.- ++-.++.+.  +..-+.+.+|.|.+.++....         ..+.++...              
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------   68 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--------------   68 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--------------
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--------------
Confidence            569999999888764 445555442  334678889999877653100         001122211              


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090          182 VGMNAANESKVAIEEAISGADMIFVTAGMGGG  213 (279)
Q Consensus       182 ~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGG  213 (279)
                                ...+++++++|.|+++++.|+-
T Consensus        69 ----------~d~~eal~~AD~Vvitag~~~~   90 (167)
T d1u8xx1          69 ----------TDPEEAFTDVDFVMAHIRVGKY   90 (167)
T ss_dssp             ----------SCHHHHHSSCSEEEECCCTTHH
T ss_pred             ----------CChhhccCCCCEEEECCCcCCC
Confidence                      1246788999999999988664

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.29  E-value=0.6  Score=35.81  Aligned_cols=78  Identities=21%  Similarity=0.148  Sum_probs=51.0

Q ss_pred             CCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          113 NEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       113 ~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      +-++|+|.| -|..|..++++|++.+. .+..+++.-+.+.+....  ..-.+..+.-                   ...
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~-~v~v~~~~R~~~~~~~~~--~~~~~~~~d~-------------------~~~   59 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSD-KFVAKGLVRSAQGKEKIG--GEADVFIGDI-------------------TDA   59 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTT-TCEEEEEESCHHHHHHTT--CCTTEEECCT-------------------TSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-cEEEEEEcCCHHHHHhcc--CCcEEEEeee-------------------ccc
Confidence            457899999 59999999999998753 345555554555554332  1223332211                   234


Q ss_pred             HHHHHHhcCCCEEEEEeecCC
Q 044090          192 VAIEEAISGADMIFVTAGMGG  212 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGG  212 (279)
                      +.+.++++++|.|+.+++..+
T Consensus        60 ~~~~~~~~~~d~vi~~a~~~~   80 (252)
T d2q46a1          60 DSINPAFQGIDALVILTSAVP   80 (252)
T ss_dssp             HHHHHHHTTCSEEEECCCCCC
T ss_pred             cccccccccceeeEEEEeecc
Confidence            567788899999998876654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.26  E-value=0.098  Score=41.92  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=23.4

Q ss_pred             CceEEEEeeCcch--HHHHHHHHHcC-CCcceEEEEeCcH
Q 044090          114 EAKIKVIGVGGGG--SNAVNRMIESS-MTGVEFWIVNTDA  150 (279)
Q Consensus       114 ~~kI~VIGIGgaG--~NIVd~l~~~~-~~~ve~iavNTD~  150 (279)
                      ++||.|||.|..|  +.++.-+.... +...+.+.+|.|.
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e   40 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE   40 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc
Confidence            5899999998655  44544443322 2345777788754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.68  E-value=0.11  Score=43.15  Aligned_cols=110  Identities=21%  Similarity=0.292  Sum_probs=64.2

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcc-cccCCCCCCC-chhhHHHHHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE-LTRGLGAGGN-PSVGMNAANESK  191 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~-~t~G~GaG~n-p~~G~eaa~e~~  191 (279)
                      ..|+.|||.|-+|.+.+.....   -++...++|.+...|+...-.-...+.+..+ ......+++. .+...+..+...
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~---lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKR---LGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHH---cCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            4699999999999999988776   4678889998665555421101122211100 0001111111 122334445567


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHH--HHHHHcC
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIA--GIAKSMG  230 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIa--eiake~g  230 (279)
                      +.|.+.+..+|+||-++=.-|+-    +|.|+  ++.+.|.
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~----aP~lit~~mv~~Mk  142 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKP----APVLITEEMVTKMK  142 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSC----CCCCSCHHHHTTSC
T ss_pred             HHHHHHHHhhhhheeeeecCCcc----cceeehHHHHHhcC
Confidence            88999999999998888777776    78774  5677764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.34  E-value=0.079  Score=40.99  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=26.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      |||.|||+|..|..++..|.++   +.+.++.|.+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~---g~~v~~~~~~   32 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR---GVEVVTSLEG   32 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT---TCEEEECCTT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC---CCeEEEEcCc
Confidence            7999999999999999999995   4566666653

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=90.26  E-value=0.12  Score=40.91  Aligned_cols=34  Identities=9%  Similarity=0.232  Sum_probs=28.0

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEe
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVN  147 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavN  147 (279)
                      ++++||.|||.|..|...+..+.+  .++++.++|.
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~--~~~~elvav~   34 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAK--QPDMDLVGIF   34 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTT--CSSEEEEEEE
T ss_pred             CCcceEEEECChHHHHHHHHHHHh--CCCcEEEEEE
Confidence            467899999999999998888865  3578888764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.58  E-value=0.22  Score=38.84  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .||.|||+|-.|..|+.+|.+.   +.+.++.|-+.+..+.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~---g~~v~~~d~~~~~~~~   39 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKA---GYLLNVFDLVQSAVDG   39 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEEEECSSHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHC---CCeEEEEECchhhhhh
Confidence            4899999999999999999985   5688888887666443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.11  E-value=0.27  Score=37.20  Aligned_cols=38  Identities=13%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .+|.|||.|..|..++.+|.++   +.+..++|-+.+....
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~---g~~V~v~dr~~~~a~~   40 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS---GIKVTVACRTLESAKK   40 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT---TCEEEEEESCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEEEEECChHHHHH
Confidence            5899999999999999999885   5688889987776665

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.99  E-value=0.22  Score=38.41  Aligned_cols=39  Identities=15%  Similarity=0.338  Sum_probs=31.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      |||.+||.|..|..++..|++.+  ..+.++.|-+.+.++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~--~~~i~v~~r~~~~~~~   39 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQG--GYRIYIANRGAEKRER   39 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--SCEEEEECSSHHHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC--CCcEEEEeCChhHHHH
Confidence            79999999999999999999875  3566777877665543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.72  E-value=3.1  Score=32.17  Aligned_cols=38  Identities=11%  Similarity=0.101  Sum_probs=29.8

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcHHHH
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDAQAM  153 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NTD~~~L  153 (279)
                      ++||.|||+|..|.+.+..+.+.  ++++..+| +.|.+..
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~--~~~~i~ai~d~~~~~~   39 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLA--PNATISGVASRSLEKA   39 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHC--TTEEEEEEECSSHHHH
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhC--CCCEEEEEEeCCcccc
Confidence            57999999999999999888664  57887765 6666544

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.11  Score=42.39  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=32.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      .||.|||.|-.|..|+-.+..   .|.+.+.+|.|.+.|+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~---~G~~V~l~D~~~~~l~~   42 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA---TGHTVVLVDQTEDILAK   42 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHh---CCCcEEEEECChHHHHH
Confidence            489999999999999988877   46788899999887765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.53  E-value=1.3  Score=32.00  Aligned_cols=28  Identities=21%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             CCCCCceEEEEeeCcchHHH-HHHHHHcC
Q 044090          110 NNNNEAKIKVIGVGGGGSNA-VNRMIESS  137 (279)
Q Consensus       110 ~~~~~~kI~VIGIGgaG~NI-Vd~l~~~~  137 (279)
                      .-....+|-+||+||.|-.. +..|.+.+
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G   32 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEG   32 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHT
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCC
Confidence            34566799999999999665 55555543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.81  E-value=0.22  Score=39.64  Aligned_cols=36  Identities=19%  Similarity=0.460  Sum_probs=26.3

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      |||.|||.|.-|..++..|.+.+ ..+..|.-+.|.+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g-~~V~l~~r~~~~~   36 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG-NEVRIWGTEFDTE   36 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC-CEEEEECCGGGHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEecccHH
Confidence            89999999999999999998764 2344443333543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.25  Score=45.23  Aligned_cols=41  Identities=22%  Similarity=0.444  Sum_probs=31.0

Q ss_pred             CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      ...||+|||+||-|+.++..|...+..  ++..+|-|.-.+.+
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg--~i~lvD~D~Ve~sN   76 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFR--QIHVIDMDTIDVSN   76 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCC--CEEEECCCBCCGGG
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCCcchhh
Confidence            456999999999999999999986653  34567776554443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.93  E-value=1.9  Score=33.21  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             CceEEEEee-CcchHHHHHHHHHcCC
Q 044090          114 EAKIKVIGV-GGGGSNAVNRMIESSM  138 (279)
Q Consensus       114 ~~kI~VIGI-GgaG~NIVd~l~~~~~  138 (279)
                      .+||.|||. |+-|.+++-.|...++
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            469999996 9999999999887765

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=86.75  E-value=0.68  Score=38.89  Aligned_cols=99  Identities=11%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             ceEEEEeeCc-chHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEc-CcccccCCCCCCCchhhHHHHHHHHH
Q 044090          115 AKIKVIGVGG-GGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQI-GCELTRGLGAGGNPSVGMNAANESKV  192 (279)
Q Consensus       115 ~kI~VIGIGg-aG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~i-G~~~t~G~GaG~np~~G~eaa~e~~e  192 (279)
                      |||+|.|.-| .|.+++.+|++.+  ..+.+++|..........  ...++.+ -.+++       +.          .+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g--~~~V~~ld~~~~~~~~~~--~~~~~~~i~~Di~-------~~----------~~   59 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLRED--HYEVYGLDIGSDAISRFL--NHPHFHFVEGDIS-------IH----------SE   59 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHST--TCEEEEEESCCGGGGGGT--TCTTEEEEECCTT-------TC----------SH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC--CCEEEEEeCCCcchhhhc--cCCCeEEEECccC-------Ch----------HH
Confidence            7999998744 7999999999864  356777876433333221  1122321 11111       11          11


Q ss_pred             HHHHHhcCCCEEEEEeecCCCcccC------------HHHHHHHHHHHcCCcEE
Q 044090          193 AIEEAISGADMIFVTAGMGGGTGTG------------AAPVIAGIAKSMGILTV  234 (279)
Q Consensus       193 ~I~~~Le~~D~vfIvAGLGGGTGSG------------~aPvIaeiake~gi~tv  234 (279)
                      .++..++++|.||-+|+.......-            ++-.+++.+++.++..+
T Consensus        60 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~  113 (342)
T d2blla1          60 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII  113 (342)
T ss_dssp             HHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhCCCccccccccccccccccCCcccccccccccccccccccccccccc
Confidence            1233456799999998887754432            23445666666665543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.54  E-value=0.54  Score=39.96  Aligned_cols=98  Identities=17%  Similarity=0.118  Sum_probs=58.9

Q ss_pred             CCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          113 NEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       113 ~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ..|||+|.| -|-.|++++.+|++.   +.+.+++|.-...- ........++.++.           .        ...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~---g~~V~~~d~~~~~~-~~~~~~~~~~~~~D-----------~--------~~~   70 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHE---GHYVIASDWKKNEH-MTEDMFCDEFHLVD-----------L--------RVM   70 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESSCCSS-SCGGGTCSEEEECC-----------T--------TSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC---cCEEEEEeCCCccc-hhhhcccCcEEEee-----------c--------hhH
Confidence            578999998 677999999999985   56777776421110 00000112333321           1        234


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccC-------------HHHHHHHHHHHcCCcE
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTG-------------AAPVIAGIAKSMGILT  233 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG-------------~aPvIaeiake~gi~t  233 (279)
                      +.+.+.++++|.|+-+|+.......-             .+-.+++.+++.++.-
T Consensus        71 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~  125 (363)
T d2c5aa1          71 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR  125 (363)
T ss_dssp             HHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhhCccc
Confidence            56677788999998888776653321             1233556677777543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=86.46  E-value=0.3  Score=38.51  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      +.+|.|||+|..|..++.+|.+.   +.+.++.|-+.+.++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~---G~~V~v~dr~~~~~~   39 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH---GFVVCAFNRTVSKVD   39 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT---TCCEEEECSSTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC---CCeEEEEcCCHHHHH
Confidence            46899999999999999999985   567778887655443

>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Vibrio cholerae [TaxId: 666]

Probab=86.09  E-value=2.8  Score=33.60  Aligned_cols=63  Identities=21%  Similarity=0.314  Sum_probs=39.1

Q ss_pred             HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEe
Q 044090          191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIP  270 (279)
Q Consensus       191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~D  270 (279)
                      ..+++...+.=|.+|++.+ +|.|  -..-..++.||+.|+.+++|...+    +           ..|.+.+|..|.++
T Consensus       102 ~~~l~~~~~~gDvli~iS~-SG~s--~~ii~a~~~Ak~~g~~~i~it~~~----~-----------~~l~~~~D~~I~vp  163 (191)
T d1x94a_         102 SRYVEAVGAKGDVLFGLST-SGNS--GNILKAIEAAKAKGMKTIALTGKD----G-----------GKMAGLADVEIRVP  163 (191)
T ss_dssp             HHHHHHHCCTTCEEEEEES-SSCC--HHHHHHHHHHHHHTCEEEEEEETT----C-----------GGGTTTSSEEEEES
T ss_pred             HHHHHHhCCCCCEEEEEec-CCcc--ccchhhHHHHHhCCCeEEEEecCC----C-----------CcccccCCEEEEeC
Confidence            3445556677788887753 2222  222233577899999999997532    2           22346688888886


Q ss_pred             c
Q 044090          271 N  271 (279)
Q Consensus       271 N  271 (279)
                      .
T Consensus       164 s  164 (191)
T d1x94a_         164 H  164 (191)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=86.04  E-value=4.2  Score=30.80  Aligned_cols=94  Identities=12%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             CceEEEEeeCcchHH-HHHHHHHcCCCcceEEEE-eCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          114 EAKIKVIGVGGGGSN-AVNRMIESSMTGVEFWIV-NTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       114 ~~kI~VIGIGgaG~N-IVd~l~~~~~~~ve~iav-NTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      ++||.|||+|..|.. .+..+.+  .++++.++| |.+.+......    .+.  +-.                    ..
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~--~~~~~i~~v~d~~~~~~~~~~----~~~--~~~--------------------~~   52 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAA--ASDWTLQGAWSPTRAKALPIC----ESW--RIP--------------------YA   52 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHS--CSSEEEEEEECSSCTTHHHHH----HHH--TCC--------------------BC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHh--CCCcEEEEEEechhHhhhhhh----hcc--ccc--------------------cc
Confidence            589999999999987 4555544  357887765 54433221100    000  000                    01


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCC
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCF  243 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~  243 (279)
                      +.+++++++.|+|+|+      |-...-.-++..+-+.|+.++.  -.|...
T Consensus        53 ~~~~~l~~~~D~V~I~------tp~~~h~~~~~~al~~gk~V~~--EKPla~   96 (164)
T d1tlta1          53 DSLSSLAASCDAVFVH------SSTASHFDVVSTLLNAGVHVCV--DKPLAE   96 (164)
T ss_dssp             SSHHHHHTTCSEEEEC------SCTTHHHHHHHHHHHTTCEEEE--ESSSCS
T ss_pred             ccchhhhhhccccccc------ccchhccccccccccccceeec--cccccC
Confidence            1233445789998885      3345555566656567877654  466643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=85.95  E-value=1.1  Score=37.72  Aligned_cols=96  Identities=19%  Similarity=0.268  Sum_probs=59.8

Q ss_pred             CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEE--eCcHH---HHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHH
Q 044090          113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIV--NTDAQ---AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iav--NTD~~---~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      .+.+|+|+|- |.-|..++.+|++.   +.+..++  |.+..   .+...   ..-.+..|.-        .|+      
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~---G~~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~--------~d~------   61 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAV---GHHVRAQVHSLKGLIAEELQAI---PNVTLFQGPL--------LNN------   61 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHT---TCCEEEEESCSCSHHHHHHHTS---TTEEEEESCC--------TTC------
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhC---CCeEEEEECCcchhhhhhhccc---CCCEEEEeeC--------CCc------
Confidence            4678999996 99999999999985   4555555  33221   12111   1113333321        111      


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCc
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL  232 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~  232 (279)
                          .+.+..++.++|.+++.....+.+-.-.+..+++.+++.++.
T Consensus        62 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~agv~  103 (350)
T d1xgka_          62 ----VPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTI  103 (350)
T ss_dssp             ----HHHHHHHHTTCSEEEECCCSTTSCHHHHHHHHHHHHHHHSCC
T ss_pred             ----HHHHHHHhcCCceEEeecccccchhhhhhhHHHHHHHHhCCC
Confidence                234667889999998887766665555566677888877743

>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Campylobacter jejuni [TaxId: 197]

Probab=85.83  E-value=3.9  Score=32.80  Aligned_cols=116  Identities=20%  Similarity=0.286  Sum_probs=65.5

Q ss_pred             CCceEEEEeeCcchHHH---HHHHHHcC---CCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHH
Q 044090          113 NEAKIKVIGVGGGGSNA---VNRMIESS---MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNA  186 (279)
Q Consensus       113 ~~~kI~VIGIGgaG~NI---Vd~l~~~~---~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~ea  186 (279)
                      ++-||.++|.||.+...   +..+....   .+....+.+..|...+...          +.+.        +++     
T Consensus        41 ~ggkI~~~GnGgSa~~A~h~a~el~~~~~~~r~~l~~i~l~~~~a~~ta~----------~nd~--------~~e-----   97 (188)
T d1tk9a_          41 KGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAI----------GNDY--------GFE-----   97 (188)
T ss_dssp             TTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHH----------HHHT--------CGG-----
T ss_pred             cCCEEEEECCCCcchhhhHHHHhhcCCccccccccccccCCCcccccccc----------cccc--------CHH-----
Confidence            46789999999998874   33333221   1223344444454444321          0000        010     


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHH---HHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhC
Q 044090          187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVI---AGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNV  263 (279)
Q Consensus       187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvI---aeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~a  263 (279)
                       +-..++++...+.=|+++.+.+      ||-.|.|   ++.+++.++.|+++.-.+.   |.            |.+++
T Consensus        98 -~~f~~ql~~~~~~gDili~iS~------SG~S~nii~a~~~Ak~~g~~ti~ltg~~~---~~------------l~~~~  155 (188)
T d1tk9a_          98 -FVFSRQVEALGNEKDVLIGIST------SGKSPNVLEALKKAKELNMLCLGLSGKGG---GM------------MNKLC  155 (188)
T ss_dssp             -GHHHHHHHHHCCTTCEEEEECS------SSCCHHHHHHHHHHHHTTCEEEEEEEGGG---TT------------HHHHC
T ss_pred             -HHHHHHHHHhcCCCcEEEEecC------CCCCchhHHHHHHHHhhcceEEEEeCCCC---ch------------hHHhC
Confidence             1134556666677788877643      4445555   4667889999999864332   21            34567


Q ss_pred             CEEEEEechH
Q 044090          264 DTLIVIPNDK  273 (279)
Q Consensus       264 D~vIv~DNd~  273 (279)
                      |..|.++-+.
T Consensus       156 D~~i~i~s~~  165 (188)
T d1tk9a_         156 DHNLVVPSDD  165 (188)
T ss_dssp             SEEEEESCSC
T ss_pred             CEEEEECCCC
Confidence            8888887653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.76  E-value=0.32  Score=37.64  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK  154 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~  154 (279)
                      |||.|||+|-.|..++..|.+.   +.+.++.|-+.+.++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~---~~~i~v~~r~~~~~~   37 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQT---PHELIISGSSLERSK   37 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS---SCEEEEECSSHHHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhC---CCeEEEEcChHHhHH
Confidence            7999999999999999999764   456677776655544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.60  E-value=0.37  Score=39.24  Aligned_cols=92  Identities=18%  Similarity=0.337  Sum_probs=64.5

Q ss_pred             CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090          112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK  191 (279)
Q Consensus       112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~  191 (279)
                      -...|+.|||.|-+|.+.+......   +++..++|.+...|+...-      .++...              +......
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~l---GA~V~~~D~~~~~l~~l~~------~~~~~~--------------~~~~~~~   86 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGL---GAQVQIFDINVERLSYLET------LFGSRV--------------ELLYSNS   86 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHH------HHGGGS--------------EEEECCH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhC---CCEEEEEeCcHHHHHHHHH------hhcccc--------------eeehhhh
Confidence            3567999999999999999888774   6899999999888875310      011100              0011234


Q ss_pred             HHHHHHhcCCCEEEEEeecCCCcccCHHHHHH--HHHHHcC
Q 044090          192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIA--GIAKSMG  230 (279)
Q Consensus       192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIa--eiake~g  230 (279)
                      +.|.+.+..+|+||=++-.-|.-    +|.|+  ++++.|.
T Consensus        87 ~~l~~~~~~aDivI~aalipG~~----aP~lIt~~mv~~Mk  123 (168)
T d1pjca1          87 AEIETAVAEADLLIGAVLVPGRR----APILVPASLVEQMR  123 (168)
T ss_dssp             HHHHHHHHTCSEEEECCCCTTSS----CCCCBCHHHHTTSC
T ss_pred             hhHHHhhccCcEEEEeeecCCcc----cCeeecHHHHhhcC
Confidence            56788899999988777766655    78774  6677764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.43  E-value=0.54  Score=36.16  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=25.3

Q ss_pred             eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090          116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ  151 (279)
Q Consensus       116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~  151 (279)
                      ||.+||+|..|..|+.+|++.   +..++..++..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~---g~~~~~~~~~~~   34 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARR---FPTLVWNRTFEK   34 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTT---SCEEEECSSTHH
T ss_pred             eEEEEeHHHHHHHHHHHHHhC---CCEEEEeCCHHH
Confidence            799999999999999999874   445544455443

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=82.36  E-value=2.8  Score=31.29  Aligned_cols=91  Identities=19%  Similarity=0.292  Sum_probs=53.8

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI  194 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I  194 (279)
                      |||.|+=-|-+|-.++++|.+. +++.+|+.+- |...+           -.|..         .+   .+..+...+ +
T Consensus         1 mkIgifDSGiGGLtVl~~l~~~-lP~~~~iY~~-D~a~~-----------PYG~k---------s~---~~I~~~~~~-~   54 (105)
T d1b74a1           1 MKIGIFDSGVGGLTVLKAIRNR-YRKVDIVYLG-DTARV-----------PYGIR---------SK---DTIIRYSLE-C   54 (105)
T ss_dssp             CEEEEEESSSTHHHHHHHHHHH-SSSCEEEEEE-CGGGC-----------CGGGS---------CH---HHHHHHHHH-H
T ss_pred             CEEEEEeCCCCHHHHHHHHHHH-CCCCCEEEEe-cCCCC-----------CCCCC---------CH---HHHHHHHHH-H
Confidence            7899999999999999999876 4577777763 43321           12211         11   122222222 2


Q ss_pred             HHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEE
Q 044090          195 EEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA  237 (279)
Q Consensus       195 ~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIv  237 (279)
                      -+.+  +++|+++|.|    .|  -.+-.+-.+.+++++++++++
T Consensus        55 ~~~l~~~~~~~iViAC----NT--aS~~al~~lr~~~~~PiiGvi   93 (105)
T d1b74a1          55 AGFLKDKGVDIIVVAC----NT--ASAYALERLKKEINVPVFGVI   93 (105)
T ss_dssp             HHHHHTTTCSEEEECC----HH--HHHHHHHHHHHHSSSCEEESH
T ss_pred             HHHHHHcCCCEEEEec----Cc--HHHHHHHHHHHHCCCCEEEee
Confidence            2222  4999998855    33  223333344567889998864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=82.06  E-value=0.72  Score=35.24  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV  155 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~  155 (279)
                      +||.|||.|..|..++-.|.+.   +.+...++.+.+.++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~---G~~V~~~~r~~~~~~~   39 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK---GQSVLAWDIDAQRIKE   39 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHC---CCEEEEEECCHHHHHH
Confidence            5999999999999999999985   4677778887665554

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=81.70  E-value=0.66  Score=34.88  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             ceEEEEeeCcchHHHHHHHHHcC
Q 044090          115 AKIKVIGVGGGGSNAVNRMIESS  137 (279)
Q Consensus       115 ~kI~VIGIGgaG~NIVd~l~~~~  137 (279)
                      |||.|||.|..|+.++-.|.+.+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G   23 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG   23 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC
Confidence            89999999999999999998864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.30  E-value=1.1  Score=36.06  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=29.0

Q ss_pred             CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090          111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD  149 (279)
Q Consensus       111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD  149 (279)
                      ...+.+|.|||.|..|..++..+...   +++.+++|.+
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~---g~~v~~~d~~   74 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAAL---GAQVRGFSRT   74 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHT---TCEEEEECSS
T ss_pred             cccCceEEEeccccccccceeeeecc---cccccccccc
Confidence            36678999999999999999988765   4576777654